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def main(): '''manual test loop for make_clean_visible_from_raw ''' import argparse import sys parser = argparse.ArgumentParser() parser.add_argument('path') args = parser.parse_args() html = open(args.path).read() html = html.decode('utf8') cursor = 0 for s in non_tag_...
def tryload_stage(self, moduleName, functionName, name=None): '''Try to load a stage into self, ignoring errors. If loading a module fails because of some subordinate load failure, just give a warning and move on. On success the stage is added to the stage dictionary. :param s...
def load_external_stages(self, path): '''Add external stages from the Python module in `path`. `path` must be a path to a Python module source that contains a `Stages` dictionary, which is a map from stage name to callable. :param str path: path to the module file ''' m...
def load_module_stages(self, mod): '''Add external stages from the Python module `mod`. If `mod` is a string, then it will be interpreted as the name of a module; otherwise it is an actual module object. The module should exist somewhere in :data:`sys.path`. The module must co...
def init_stage(self, name, config): '''Construct and configure a stage from known stages. `name` must be the name of one of the stages in this. `config` is the configuration dictionary of the containing object, and its `name` member will be passed into the stage constructor. ...
def read_to( idx_bytes, stop_bytes=None, run_bytes=None ): ''' iterates through idx_bytes until a byte in stop_bytes or a byte not in run_bytes. :rtype (int, string): idx of last byte and all of bytes including the terminal byte from stop_bytes or not in run_bytes ''' idx = None vals = ...
def iter_attrs( idx_bytes ): ''' called when idx_chars is just past "<a " inside an HTML anchor tag generates tuple(end_idx, attr_name, attr_value) ''' ## read to the end of the "A" tag while 1: idx, attr_name, next_b = read_to(idx_bytes, ['=', '>']) attr_vals = [] ...
def href_filter(self, href): ''' Test whether an href string meets criteria specified by configuration parameters 'require_abs_url', which means "does it look like it is probably an absolute URL?" and 'domain_substrings'. It searches for each of the domain_substrings in ...
def line_href_anchors(self): ''' simple, regex-based extractor of anchor tags, so we can compute LINE offsets for anchor texts and associate them with their href. Generates tuple(href_string, first_byte, byte_length, anchor_text) Also, this mangles the body.clea...
def byte_href_anchors(self, chars=False): ''' simple, regex-based extractor of anchor tags, so we can compute BYTE offsets for anchor texts and associate them with their href. Generates tuple(href_string, first_byte, byte_length, anchor_text) ''' input_bu...
def byte_href_anchors_state_machine(self): ''' byte-based state machine extractor of anchor tags, so we can compute byte offsets for anchor texts and associate them with their href. Generates tuple(href_string, first_byte, byte_length, anchor_text) ''' ta...
def make_labels(self, clean_html, clean_visible=None): ''' Make a list of Labels for 'author' and the filtered hrefs & anchors ''' if self.offset_type == OffsetType.BYTES: parser = self.byte_href_anchors elif self.offset_type == OffsetType.CHARS: ...
def paths(input_dir): 'yield all file paths under input_dir' for root, dirs, fnames in os.walk(input_dir): for i_fname in fnames: i_path = os.path.join(root, i_fname) yield i_path
def _create_column_family(self, family, bytes_columns=[], key_validation_class=TIME_UUID_TYPE): ''' Creates a column family of the name 'family' and sets any of the names in the bytes_column list to have the BYTES_TYPE. key_validation_class defaults to TIM...
def _create_counter_column_family(self, family, counter_columns=[], key_validation_class=UTF8Type): ''' Creates a column family of the name 'family' and sets any of the names in the bytes_column list to have the BYTES_TYPE. key_validation_class defaults to ...
def tasks(self, key_prefix=''): ''' generate the data objects for every task ''' for row in self._tasks.get_range(): logger.debug(row) if not row[0].startswith(key_prefix): continue data = json.loads(row[1]['task_data']) dat...
def get_random_available(self, max_iter=10000): ''' get a random key out of the first max_iter rows ''' c = 1 keeper = None ## note the ConsistencyLevel here. If we do not do this, and ## get all slick with things like column_count=0 and filter ## empty F...
def files(text): ''' Iterate over <FILENAME> XML-like tags and tokenize with nltk ''' for f_match in filename_re.finditer(text): yield f_match.group('stream_id'), f_match.group('tagged_doc')
def sentences(self): ''' Iterate over <s> XML-like tags and tokenize with nltk ''' for sentence_id, node in enumerate(self.ner_dom.childNodes): ## increment the char index with any text before the <s> ## tag. Crucial assumption here is that the LingPipe XML ...
def _make_token(self, start, end): ''' Instantiates a Token from self._input_string[start:end] ''' ## all thfift strings must be encoded first tok_string = self._input_string[start:end].encode('utf-8') if only_whitespace.match(tok_string): ## drop any tokens w...
def tokens(self, sentence_dom): ''' Tokenize all the words and preserve NER labels from ENAMEX tags ''' ## keep track of sentence position, which is reset for each ## sentence, and used above in _make_token self.sent_pos = 0 ## keep track of mention_id, so we...
def get_sentences(self, ner_dom): '''parse the sentences and tokens out of the XML''' lp_parser = LingPipeParser(self.config) lp_parser.set(ner_dom) sentences = list( lp_parser.sentences() ) return sentences, lp_parser.relations, lp_parser.attributes
def recursive_glob_with_tree(new_base, old_base, treeroot, pattern): '''generate a list of tuples(new_base, list(paths to put there) where the files are found inside of old_base/treeroot. ''' results = [] old_cwd = os.getcwd() os.chdir(old_base) for rel_base, dirs, files in os.walk(treeroot)...
def _retry(func): ''' Decorator for methods that need many retries, because of intermittent failures, such as AWS calls via boto, which has a non-back-off retry. ''' def retry_func(self, *args, **kwargs): tries = 1 while True: # If a handler allows execution to contin...
def verify_md5(md5_expected, data, other_errors=None): "return True if okay, raise Exception if not" # O_o ? md5_recv = hashlib.md5(data).hexdigest() if md5_expected != md5_recv: if other_errors is not None: logger.critical('\n'.join(other_errors)) raise FailedVerification('orig...
def get_bucket(config, bucket_name=None): '''This function is mostly about managing configuration, and then finally returns a boto.Bucket object. AWS credentials come first from config keys aws_access_key_id_path, aws_secret_access_key_path (paths to one line files); secondly from environment varia...
def _decode(self, data): ''' Given the raw data from s3, return a generator for the items contained in that data. A generator is necessary to support chunk files, but non-chunk files can be provided by a generator that yields exactly one item. Decoding works by case anal...
def get_chunk(self, bucket_name, key_path): '''return Chunk object full of records bucket_name may be None''' bucket = get_bucket(self.config, bucket_name=bucket_name) key = bucket.get_key(key_path) if key is None: raise FailedExtraction('Key "%s" does not exist.' % k...
def stream_id_to_kvlayer_key(stream_id): '''Convert a text stream ID to a kvlayer key. The return tuple can be used directly as a key in the :data:`STREAM_ITEMS_TABLE` table. :param str stream_id: stream ID to convert :return: :mod:`kvlayer` key tuple :raise exceptions.KeyError: if `stream_id`...
def kvlayer_key_to_stream_id(k): '''Convert a kvlayer key to a text stream ID. `k` should be of the same form produced by :func:`stream_id_to_kvlayer_key`. :param k: :mod:`kvlayer` key tuple :return: converted stream ID :returntype str: ''' abs_url_hash, epoch_ticks = k return '{0...
def key_for_stream_item(si): '''Get a kvlayer key from a stream item. The return tuple can be used directly as a key in the :data:`STREAM_ITEMS_TABLE` table. Note that this recalculates the stream ID, and if the internal data on the stream item is inconsistent then this could return a different re...
def main(argv=sys.argv): args = parse(argv) """Serve up some ponies.""" hostname = args.listen port = args.port print( "Making all your dreams for a pony come true on http://{0}:{1}.\n" "Press Ctrl+C to quit.\n".format(hostname, port)) # Hush, werkzeug. logging.getLogger('we...
def build_parser(): """Build the parser that will have all available commands and options.""" description = ( 'HTTPony (pronounced aych-tee-tee-pony) is a simple HTTP ' 'server that pretty prints HTTP requests to a terminal. It ' 'is a useful aide for developing clients that send HTTP ' ...
def add_xpaths_to_stream_item(si): '''Mutably tag tokens with xpath offsets. Given some stream item, this will tag all tokens from all taggings in the document that contain character offsets. Note that some tokens may not have computable xpath offsets, so an xpath offset for those tokens will not b...
def sentences_to_char_tokens(si_sentences): '''Convert stream item sentences to character ``Offset``s.''' for sentence in si_sentences: for token in sentence.tokens: if OffsetType.CHARS in token.offsets: yield token
def char_tokens_to_char_offsets(si_tokens): '''Convert character ``Offset``s to character ranges.''' for token in si_tokens: offset = token.offsets[OffsetType.CHARS] yield offset.first, offset.first + offset.length
def char_offsets_to_xpaths(html, char_offsets): '''Converts HTML and a sequence of char offsets to xpath offsets. Returns a generator of :class:`streamcorpus.XpathRange` objects in correspondences with the sequence of ``char_offsets`` given. Namely, each ``XpathRange`` should address precisely the same...
def stream_item_roundtrip_xpaths(si, quick=False): '''Roundtrip all Xpath offsets in the given stream item. For every token that has both ``CHARS`` and ``XPATH_CHARS`` offsets, slice the ``clean_html`` with the ``XPATH_CHARS`` offset and check that it matches slicing ``clean_visible`` with the ``CH...
def add_element(self, tag): '''Record that `tag` has been seen at this depth. If `tag` is :class:`TextElement`, it records a text node. ''' # Collapse adjacent text nodes if tag is TextElement and self.last_tag is TextElement: return self.last_tag = tag ...
def xpath_piece(self): '''Get an XPath fragment for this location. It is of the form ``tag[n]`` where `tag` is the most recent element added and n is its position. ''' if self.last_tag is TextElement: return 'text()[{count}]'.format(count=self.text_index()) ...
def text_index(self): '''Returns the one-based index of the current text node.''' # This is the number of text nodes we've seen so far. # If we are currently in a text node, great; if not then add # one for the text node that's about to begin. i = self.tags.get(TextElement, 0) ...
def xpath_offset(self): '''Returns a tuple of ``(xpath, character offset)``. The ``xpath`` returned *uniquely* identifies the end of the text node most recently inserted. The character offsets indicates where the text inside the node ends. (When the text node is empty, the offse...
def descendants(elem): ''' Yields all the elements descendant of elem in document order ''' for child in elem.xml_children: if isinstance(child, element): yield child yield from descendants(child)
def select_elements(source): ''' Yields all the elements from the source source - if an element, yields all child elements in order; if any other iterator yields the elements from that iterator ''' if isinstance(source, element): source = source.xml_children return filter(lambda x: isins...
def select_name(source, name): ''' Yields all the elements with the given name source - if an element, starts with all child elements in order; can also be any other iterator name - will yield only elements with this name ''' return filter(lambda x: x.xml_name == name, select_elements(source))
def select_name_pattern(source, pat): ''' Yields elements from the source whose name matches the given regular expression pattern source - if an element, starts with all child elements in order; can also be any other iterator pat - re.pattern object ''' return filter(lambda x: pat.match(x.xml_na...
def select_value(source, val): ''' Yields elements from the source with the given value (accumulated child text) source - if an element, starts with all child elements in order; can also be any other iterator val - string value to match ''' if isinstance(source, element): source = source...
def select_attribute(source, name, val=None): ''' Yields elements from the source having the given attrivute, optionally with the given attribute value source - if an element, starts with all child elements in order; can also be any other iterator name - attribute name to check val - if None check o...
def following_siblings(elem): ''' Yields elements and text which have the same parent as elem, but come afterward in document order ''' it = itertools.dropwhile(lambda x: x != elem, elem.xml_parent.xml_children) next(it) #Skip the element itself return it
def select_pattern(node, pattern, state=None): ''' Yield descendant nodes matching the given pattern specification pattern - tuple of steps, each of which matches an element by name, with "*" acting like a wildcard, descending the tree in tuple order sort of like a subset of XPath in Python ...
def make_pretty(elem, depth=0, indent=' '): ''' Add text nodes as possible to all descendants of an element for spacing & indentation to make the MicroXML as printed easier for people to read. Will not modify the value of any text node which is not already entirely whitespace. Warning: even though...
def call_inkscape(args_strings, inkscape_binpath=None): """Call inkscape CLI with arguments and returns its return value. Parameters ---------- args_string: list of str inkscape_binpath: str Returns ------- return_value Inkscape command CLI call return value. """ log.d...
def inkscape_export(input_file, output_file, export_flag="-A", dpi=90, inkscape_binpath=None): """ Call Inkscape to export the input_file to output_file using the specific export argument flag for the output file type. Parameters ---------- input_file: str Path to the input file outpu...
def svg2pdf(svg_file_path, pdf_file_path, dpi=150, command_binpath=None, support_unicode=False): """ Transform SVG file to PDF file """ if support_unicode: return rsvg_export(svg_file_path, pdf_file_path, dpi=dpi, rsvg_binpath=command_binpath) return inkscape_export(svg_file_path, pdf_file_pat...
def svg2png(svg_file_path, png_file_path, dpi=150, inkscape_binpath=None): """ Transform SVG file to PNG file """ return inkscape_export(svg_file_path, png_file_path, export_flag="-e", dpi=dpi, inkscape_binpath=inkscape_binpath)
def get_environment_for(file_path): """Return a Jinja2 environment for where file_path is. Parameters ---------- file_path: str Returns ------- jinja_env: Jinja2.Environment """ work_dir = os.path.dirname(os.path.abspath(file_path)) if not os.path.exists(work_dir): ra...
def _setup_template_file(self, template_file_path): """ Setup self.template Parameters ---------- template_file_path: str Document template file path. """ try: template_file = template_file_path template_env = get_environment_for(templ...
def fill(self, doc_contents): """ Fill the content of the document with the information in doc_contents. Parameters ---------- doc_contents: dict Set of values to set the template document. Returns ------- filled_doc: str The content of t...
def save_content(self, file_path, encoding='utf-8'): """ Save the content of the .txt file in a text file. Parameters ---------- file_path: str Path to the output file. """ if self.file_content_ is None: msg = 'Template content has not been update...
def from_template_file(cls, template_file_path, command=None): """ Factory function to create a specific document of the class given by the `command` or the extension of `template_file_path`. See get_doctype_by_command and get_doctype_by_extension. Parameters ---------- ...
def fill(self, doc_contents): """ Fill the content of the document with the information in doc_contents. This is different from the TextDocument fill function, because this will check for symbools in the values of `doc_content` and replace them to good XML codes before filling the templa...
def render(self, file_path, **kwargs): """ Save the content of the .svg file in the chosen rendered format. Parameters ---------- file_path: str Path to the output file. Kwargs ------ file_type: str Choices: 'png', 'pdf', 'svg' ...
def render(self, file_path, **kwargs): """ Save the content of the .text file in the PDF. Parameters ---------- file_path: str Path to the output file. """ temp = get_tempfile(suffix='.tex') self.save_content(temp.name) try: self....
def parse(source, handler): ''' Convert XML 1.0 to MicroXML source - XML 1.0 input handler - MicroXML events handler Returns uxml, extras uxml - MicroXML element extracted from the source extras - information to be preserved but not part of MicroXML, e.g. namespaces ''' h = expat_...
def search(self): '''Start the optimisation/search using the supplied optimisation method with the supplied inputs for the supplied function''' search = self._method(inputs=self._inputs, function=self._function, state=self._state) search.run()
def parse(source, prefixes=None, model=None, encoding=None, use_xhtml_ns=False): ''' Parse an input source with HTML text into an Amara 3 tree >>> from amara3.uxml import html5 >>> import urllib.request >>> with urllib.request.urlopen('http://uche.ogbuji.net/') as response: ... html5.parse(...
def markup_fragment(source, encoding=None): ''' Parse a fragment if markup in HTML mode, and return a bindery node Warning: if you pass a string, you must make sure it's a byte string, not a Unicode object. You might also want to wrap it with amara.lib.inputsource.text if it's not obviously XML or HTML (f...
def insertText(self, data, insertBefore=None): """Insert data as text in the current node, positioned before the start of node insertBefore or to the end of the node's text. """ if insertBefore: self.insertBefore(tree.text(data), insertBefore) else: self.x...
def insertBefore(self, node, refNode): """Insert node as a child of the current node, before refNode in the list of child nodes. Raises ValueError if refNode is not a child of the current node""" offset = self.xml_children.index(refNode) self.xml_insert(node, offset)
def cloneNode(self): """Return a shallow copy of the current node i.e. a node with the same name and attributes but with no parent or child nodes """ attrs = self.xml_attributes.copy() return element(self.xml_name, attrs=attrs)
def execute(option): '''A script that melody calls with each valid set of options. This script runs the required code and returns the results.''' namelist_option = [] makefile_option = [] flags = "" for entry in option: key = entry.keys()[0] if key == "Problem Size": ...
def create_vcard3_str(name, surname, displayname, email='', org='', title='', url='', note=''): """ Create a vCard3.0 string with the given parameters. Reference: http://www.evenx.com/vcard-3-0-format-specification """ vcard = [] vcard += ['BEGIN:VCARD'] vcard += ['VERSION:3.0'] if name and...
def strval(node, outermost=True): ''' XPath-like string value of node ''' if not isinstance(node, element): return node.xml_value if outermost else [node.xml_value] accumulator = [] for child in node.xml_children: if isinstance(child, text): accumulator.append(child.x...
def xml_insert(self, child, index=-1): ''' Append a node as the last child child - the child to append. If a string, convert to a text node, for convenience ''' if isinstance(child, str): child = text(child, parent=self) else: child._xml_parent = ...
def parse_options(): """ Commandline options arguments parsing. """ # build options and help version = "%%prog {version}".format(version=__version__) parser = OptionParser(version=version) parser.add_option( "-u", "--username", action="store", dest="username", type="string",...
def parse_config(options): """ Get settings from config file. """ if os.path.exists(options.config): config = ConfigParser.ConfigParser() try: config.read(options.config) except Exception, err: if not options.quiet: sys.stderr.write("ERROR...
def get_google_credentials(options, config): """ Get google API credentials for user. """ try: if options.get_google_credentials: flow = flow_from_clientsecrets(config["secrets"], scope=SCOPE, redirect_uri="oob") sys.stdout.write("Follow this URL: {url} and grant access ...
def create_event_datetimes(options, config): """ Create event start and end datetimes. """ now = datetime.datetime.now() return { "start": { "dateTime": (now + datetime.timedelta(minutes=int(config["start"]))).strftime(DT_FORMAT), "timeZone": options.timezone, ...
def create_event(options, config, credentials): """ Create event in calendar with sms reminder. """ try: http = credentials.authorize(httplib2.Http()) service = build("calendar", "v3", http=http) event = { "summary": options.message, "location": "", ...
def main(): """ Processing notification call main function. """ # getting info for creating event options = parse_options() config = parse_config(options) credentials = get_google_credentials(options, config) if not options.get_google_credentials: create_event(options, config, ...
def create(input, template, field, outdir, prefix, otype, command, index, dpi, verbose, unicode_support): """Use docstamp to create documents from the content of a CSV file or a Google Spreadsheet. Examples: \n docstamp create -i badge.csv -t badge_template.svg -o badges docstamp create ...
def get_extension(filepath, check_if_exists=False): """Return the extension of fpath. Parameters ---------- fpath: string File name or path check_if_exists: bool Returns ------- str The extension of the file name or path """ if check_if_exists: if not os.path.e...
def add_extension_if_needed(filepath, ext, check_if_exists=False): """Add the extension ext to fpath if it doesn't have it. Parameters ---------- filepath: str File name or path ext: str File extension check_if_exists: bool Returns ------- File name or path with extension...
def get_tempfile(suffix='.txt', dirpath=None): """ Return a temporary file with the given suffix within dirpath. If dirpath is None, will look for a temporary folder in your system. Parameters ---------- suffix: str Temporary file name suffix dirpath: str Folder path where crea...
def cleanup(workdir, extension): """ Remove the files in workdir that have the given extension. Parameters ---------- workdir: Folder path from where to clean the files. extension: str File extension without the dot, e.g., 'txt' """ [os.remove(f) for f in glob(os.path.join(...
def csv_to_json(csv_filepath, json_filepath, fieldnames, ignore_first_line=True): """ Convert a CSV file in `csv_filepath` into a JSON file in `json_filepath`. Parameters ---------- csv_filepath: str Path to the input CSV file. json_filepath: str Path to the output JSON file. Will ...
def write_to_file(file_path, content, encoding=None): """ Write `content` inside the file in `file_path` with the given encoding. Parameters ---------- file_path: str Path to the output file. Will be overwritten if exists. content: str The content you want in the file. encoding...
def replace_file_content(filepath, old, new, max=1): """ Modify the content of `filepath`, replacing `old` for `new`. Parameters ---------- filepath: str Path to the file to be modified. It will be overwritten. old: str This is old substring to be replaced. new: str Th...
def cleanup_docstamp_output(output_dir=''): """ Remove the 'tmp*.aux', 'tmp*.out' and 'tmp*.log' files in `output_dir`. :param output_dir: """ suffixes = ['aux', 'out', 'log'] files = [f for suf in suffixes for f in glob(os.path.join(output_dir, 'tmp*.{}'.format(suf)))] [os.remove(file) for file...
def parse(self): """ Run all parsing functions. """ for tag in self.soup.findAll('span'): self.create_italic(tag) self.create_strong(tag) self.create_underline(tag) self.unwrap_span(tag) for tag in self.soup.findAll('a'): ...
def check_next(self, tag): """ If next tag is link with same href, combine them. """ if (type(tag.next_sibling) == element.Tag and tag.next_sibling.name == 'a'): next_tag = tag.next_sibling if tag.get('href') and next_tag.get('href'): ...
def create_italic(self, tag): """ See if span tag has italic style and wrap with em tag. """ style = tag.get('style') if style and 'font-style:italic' in style: tag.wrap(self.soup.new_tag('em'))
def create_strong(self, tag): """ See if span tag has bold style and wrap with strong tag. """ style = tag.get('style') if (style and ('font-weight:bold' in style or 'font-weight:700' in style)): tag.wrap(self.soup.new_tag('strong'))
def create_underline(self, tag): """ See if span tag has underline style and wrap with u tag. """ style = tag.get('style') if style and 'text-decoration:underline' in style: tag.wrap(self.soup.new_tag('u'))
def parse_attrs(self, tag): """ Reject attributes not defined in ATTR_WHITELIST. """ if tag.name in ATTR_WHITELIST.keys(): attrs = copy(tag.attrs) for attr, value in attrs.items(): if attr in ATTR_WHITELIST[tag.name]: tag.attrs[...
def remove_empty(self, tag): """ Remove non-self-closing tags with no children *and* no content. """ has_children = len(tag.contents) has_text = len(list(tag.stripped_strings)) if not has_children and not has_text and not tag.is_empty_element: tag.extract()
def clean_linebreaks(self, tag): """ get unicode string without any other content transformation. and clean extra spaces """ stripped = tag.decode(formatter=None) stripped = re.sub('\s+', ' ', stripped) stripped = re.sub('\n', '', stripped) return stripped
def _parse_href(self, href): """ Extract "real" URL from Google redirected url by getting `q` querystring parameter. """ params = parse_qs(urlsplit(href).query) return params.get('q')
def _parse_attr(self, tagname, attr, value): """ Parse attribute. Delegate to href parser for hrefs, otherwise return value. """ if tagname == 'a' and attr == 'href': return self._parse_href(value) else: return value
def translate_key_values(adict, translations, default=''): """Modify the keys in adict to the ones in translations. Be careful, this will modify your input dictionary. The keys not present in translations will be left intact. Parameters ---------- adict: a dictionary translations: iterable...