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def save_vocab(count=None, name='vocab.txt'): """Save the vocabulary to a file so the model can be reloaded. Parameters ---------- count : a list of tuple and list count[0] is a list : the number of rare words, count[1:] are tuples : the number of occurrence of each word, e.g. [...
def basic_tokenizer(sentence, _WORD_SPLIT=re.compile(b"([.,!?\"':;)(])")): """Very basic tokenizer: split the sentence into a list of tokens. Parameters ----------- sentence : tensorflow.python.platform.gfile.GFile Object _WORD_SPLIT : regular expression for word spliting. Examples ------...
def create_vocabulary( vocabulary_path, data_path, max_vocabulary_size, tokenizer=None, normalize_digits=True, _DIGIT_RE=re.compile(br"\d"), _START_VOCAB=None ): r"""Create vocabulary file (if it does not exist yet) from data file. Data file is assumed to contain one sentence per line. Each sen...
def initialize_vocabulary(vocabulary_path): """Initialize vocabulary from file, return the `word_to_id` (dictionary) and `id_to_word` (list). We assume the vocabulary is stored one-item-per-line, so a file will result in a vocabulary {"dog": 0, "cat": 1}, and this function will also return the reversed-voc...
def sentence_to_token_ids( sentence, vocabulary, tokenizer=None, normalize_digits=True, UNK_ID=3, _DIGIT_RE=re.compile(br"\d") ): """Convert a string to list of integers representing token-ids. For example, a sentence "I have a dog" may become tokenized into ["I", "have", "a", "dog"] and with vocab...
def data_to_token_ids( data_path, target_path, vocabulary_path, tokenizer=None, normalize_digits=True, UNK_ID=3, _DIGIT_RE=re.compile(br"\d") ): """Tokenize data file and turn into token-ids using given vocabulary file. This function loads data line-by-line from data_path, calls the above s...
def moses_multi_bleu(hypotheses, references, lowercase=False): """Calculate the bleu score for hypotheses and references using the MOSES ulti-bleu.perl script. Parameters ------------ hypotheses : numpy.array.string A numpy array of strings where each string is a single example. referen...
def word_to_id(self, word): """Returns the integer id of a word string.""" if word in self._vocab: return self._vocab[word] else: return self._unk_id
def word_to_id(self, word): """Returns the integer word id of a word string.""" if word in self.vocab: return self.vocab[word] else: return self.unk_id
def id_to_word(self, word_id): """Returns the word string of an integer word id.""" if word_id >= len(self.reverse_vocab): return self.reverse_vocab[self.unk_id] else: return self.reverse_vocab[word_id]
def basic_clean_str(string): """Tokenization/string cleaning for a datasets.""" string = re.sub(r"\n", " ", string) # '\n' --> ' ' string = re.sub(r"\'s", " \'s", string) # it's --> it 's string = re.sub(r"\’s", " \'s", string) string = re.sub(r"\'ve", " have", string) # they've --> t...
def main_restore_embedding_layer(): """How to use Embedding layer, and how to convert IDs to vector, IDs to words, etc. """ # Step 1: Build the embedding matrix and load the existing embedding matrix. vocabulary_size = 50000 embedding_size = 128 model_file_name = "model_word2vec_50k_128" ...
def main_lstm_generate_text(): """Generate text by Synced sequence input and output.""" # rnn model and update (describtion: see tutorial_ptb_lstm.py) init_scale = 0.1 learning_rate = 1.0 max_grad_norm = 5 sequence_length = 20 hidden_size = 200 max_epoch = 4 max_max_epoch = 100 ...
def createAndStartSwarm(client, clientInfo="", clientKey="", params="", minimumWorkers=None, maximumWorkers=None, alreadyRunning=False): """Create and start a swarm job. Args: client - A string identifying the calling client. There is a small limit for th...
def getSwarmModelParams(modelID): """Retrieve the Engine-level model params from a Swarm model Args: modelID - Engine-level model ID of the Swarm model Returns: JSON-encoded string containing Model Params """ # TODO: the use of nupic.frameworks.opf.helpers.loadExperimentDescriptionScriptFromDir whe...
def enableConcurrencyChecks(maxConcurrency, raiseException=True): """ Enable the diagnostic feature for debugging unexpected concurrency in acquiring ConnectionWrapper instances. NOTE: This MUST be done early in your application's execution, BEFORE any accesses to ConnectionFactory or connection policies from ...
def _getCommonSteadyDBArgsDict(): """ Returns a dictionary of arguments for DBUtils.SteadyDB.SteadyDBConnection constructor. """ return dict( creator = pymysql, host = Configuration.get('nupic.cluster.database.host'), port = int(Configuration.get('nupic.cluster.database.port')), user = ...
def _getLogger(cls, logLevel=None): """ Gets a logger for the given class in this module """ logger = logging.getLogger( ".".join(['com.numenta', _MODULE_NAME, cls.__name__])) if logLevel is not None: logger.setLevel(logLevel) return logger
def get(cls): """ Acquire a ConnectionWrapper instance that represents a connection to the SQL server per nupic.cluster.database.* configuration settings. NOTE: caller is responsible for calling the ConnectionWrapper instance's release() method after using the connection in order to release resources. ...
def _createDefaultPolicy(cls): """ [private] Create the default database connection policy instance Parameters: ---------------------------------------------------------------- retval: The default database connection policy instance """ logger = _getLogger(cls) logger.debug( ...
def release(self): """ Release the database connection and cursor The receiver of the Connection instance MUST call this method in order to reclaim resources """ self._logger.debug("Releasing: %r", self) # Discard self from set of outstanding instances if self._addedToInstanceSet: t...
def _trackInstanceAndCheckForConcurrencyViolation(self): """ Check for concurrency violation and add self to _clsOutstandingInstances. ASSUMPTION: Called from constructor BEFORE _clsNumOutstanding is incremented """ global g_max_concurrency, g_max_concurrency_raise_exception assert g_max_c...
def close(self): """ Close the policy instance and its shared database connection. """ self._logger.info("Closing") if self._conn is not None: self._conn.close() self._conn = None else: self._logger.warning( "close() called, but connection policy was alredy closed") return
def acquireConnection(self): """ Get a Connection instance. Parameters: ---------------------------------------------------------------- retval: A ConnectionWrapper instance. NOTE: Caller is responsible for calling the ConnectionWrapper instance's release(...
def close(self): """ Close the policy instance and its database connection pool. """ self._logger.info("Closing") if self._pool is not None: self._pool.close() self._pool = None else: self._logger.warning( "close() called, but connection policy was alredy closed") return
def acquireConnection(self): """ Get a connection from the pool. Parameters: ---------------------------------------------------------------- retval: A ConnectionWrapper instance. NOTE: Caller is responsible for calling the ConnectionWrapper instance's rel...
def close(self): """ Close the policy instance. """ self._logger.info("Closing") if self._opened: self._opened = False else: self._logger.warning( "close() called, but connection policy was alredy closed") return
def acquireConnection(self): """ Create a Connection instance. Parameters: ---------------------------------------------------------------- retval: A ConnectionWrapper instance. NOTE: Caller is responsible for calling the ConnectionWrapper instance's relea...
def _releaseConnection(self, dbConn, cursor): """ Release database connection and cursor; passed as a callback to ConnectionWrapper """ self._logger.debug("Releasing connection") # Close the cursor cursor.close() # ... then close the database connection dbConn.close() return
def getSpec(cls): """ Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getSpec`. """ ns = dict( description=KNNAnomalyClassifierRegion.__doc__, singleNodeOnly=True, inputs=dict( spBottomUpOut=dict( description="""The output signal generated from the...
def getParameter(self, name, index=-1): """ Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getParameter`. """ if name == "trainRecords": return self.trainRecords elif name == "anomalyThreshold": return self.anomalyThreshold elif name == "activeColumnCount": return se...
def setParameter(self, name, index, value): """ Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.setParameter`. """ if name == "trainRecords": # Ensure that the trainRecords can only be set to minimum of the ROWID in # the saved states if not (isinstance(value, float) or isins...
def compute(self, inputs, outputs): """ Process one input sample. This method is called by the runtime engine. """ record = self._constructClassificationRecord(inputs) #Classify this point after waiting the classification delay if record.ROWID >= self.getParameter('trainRecords'): sel...
def _classifyState(self, state): """ Reclassifies given state. """ # Record is before wait period do not classifiy if state.ROWID < self.getParameter('trainRecords'): if not state.setByUser: state.anomalyLabel = [] self._deleteRecordsFromKNN([state]) return label = K...
def _constructClassificationRecord(self, inputs): """ Construct a _HTMClassificationRecord based on the state of the model passed in through the inputs. Types for self.classificationVectorType: 1 - TM active cells in learn state 2 - SP columns concatenated with error from TM column predicti...
def _addRecordToKNN(self, record): """ Adds the record to the KNN classifier. """ knn = self._knnclassifier._knn prototype_idx = self._knnclassifier.getParameter('categoryRecencyList') category = self._labelListToCategoryNumber(record.anomalyLabel) # If record is already in the classifier,...
def _deleteRecordsFromKNN(self, recordsToDelete): """ Removes the given records from the classifier. parameters ------------ recordsToDelete - list of records to delete from the classififier """ prototype_idx = self._knnclassifier.getParameter('categoryRecencyList') idsToDelete = ([r.R...
def _deleteRangeFromKNN(self, start=0, end=None): """ Removes any stored records within the range from start to end. Noninclusive of end. parameters ------------ start - integer representing the ROWID of the start of the deletion range, end - integer representing the ROWID of the end of the...
def _recomputeRecordFromKNN(self, record): """ returns the classified labeling of record """ inputs = { "categoryIn": [None], "bottomUpIn": self._getStateAnomalyVector(record), } outputs = {"categoriesOut": numpy.zeros((1,)), "bestPrototypeIndices":numpy.zeros((1,)), ...
def _labelToCategoryNumber(self, label): """ Since the KNN Classifier stores categories as numbers, we must store each label as a number. This method converts from a label to a unique number. Each label is assigned a unique bit so multiple labels may be assigned to a single record. """ if la...
def _labelListToCategoryNumber(self, labelList): """ This method takes a list of labels and returns a unique category number. This enables this class to store a list of categories for each point since the KNN classifier only stores a single number category for each record. """ categoryNumber = 0...
def _categoryToLabelList(self, category): """ Converts a category number into a list of labels """ if category is None: return [] labelList = [] labelNum = 0 while category > 0: if category % 2 == 1: labelList.append(self.saved_categories[labelNum]) labelNum += 1 ...
def _getStateAnomalyVector(self, state): """ Returns a state's anomaly vertor converting it from spare to dense """ vector = numpy.zeros(self._anomalyVectorLength) vector[state.anomalyVector] = 1 return vector
def getLabels(self, start=None, end=None): """ Get the labels on classified points within range start to end. Not inclusive of end. :returns: (dict) with format: :: { 'isProcessing': boolean, 'recordLabels': list of results } ``isProcessing`` - current...
def addLabel(self, start, end, labelName): """ Add the label labelName to each record with record ROWID in range from ``start`` to ``end``, noninclusive of end. This will recalculate all points from end to the last record stored in the internal cache of this classifier. :param start: (int) sta...
def removeLabels(self, start=None, end=None, labelFilter=None): """ Remove labels from each record with record ROWID in range from ``start`` to ``end``, noninclusive of end. Removes all records if ``labelFilter`` is None, otherwise only removes the labels equal to ``labelFilter``. This will r...
def match(self, record): ''' Returns True if the record matches any of the provided filters ''' for field, meta in self.filterDict.iteritems(): index = meta['index'] categories = meta['categories'] for category in categories: # Record might be blank, handle this if not...
def replace(self, columnIndex, bitmap): """ Wraps replaceSparseRow()""" return super(_SparseMatrixCorticalColumnAdapter, self).replaceSparseRow( columnIndex, bitmap )
def update(self, columnIndex, vector): """ Wraps setRowFromDense()""" return super(_SparseMatrixCorticalColumnAdapter, self).setRowFromDense( columnIndex, vector )
def setLocalAreaDensity(self, localAreaDensity): """ Sets the local area density. Invalidates the 'numActiveColumnsPerInhArea' parameter :param localAreaDensity: (float) value to set """ assert(localAreaDensity > 0 and localAreaDensity <= 1) self._localAreaDensity = localAreaDensity ...
def getPotential(self, columnIndex, potential): """ :param columnIndex: (int) column index to get potential for. :param potential: (list) will be overwritten with column potentials. Must match the number of inputs. """ assert(columnIndex < self._numColumns) potential[:] = self._poten...
def setPotential(self, columnIndex, potential): """ Sets the potential mapping for a given column. ``potential`` size must match the number of inputs, and must be greater than ``stimulusThreshold``. :param columnIndex: (int) column index to set potential for. :param potential: (list) value to ...
def getPermanence(self, columnIndex, permanence): """ Returns the permanence values for a given column. ``permanence`` size must match the number of inputs. :param columnIndex: (int) column index to get permanence for. :param permanence: (list) will be overwritten with permanences. """ ...
def setPermanence(self, columnIndex, permanence): """ Sets the permanence values for a given column. ``permanence`` size must match the number of inputs. :param columnIndex: (int) column index to set permanence for. :param permanence: (list) value to set. """ assert(columnIndex < self...
def getConnectedSynapses(self, columnIndex, connectedSynapses): """ :param connectedSynapses: (list) will be overwritten :returns: (iter) the connected synapses for a given column. ``connectedSynapses`` size must match the number of inputs""" assert(columnIndex < self._numColumns) conn...
def stripUnlearnedColumns(self, activeArray): """ Removes the set of columns who have never been active from the set of active columns selected in the inhibition round. Such columns cannot represent learned pattern and are therefore meaningless if only inference is required. This should not be done ...
def _updateMinDutyCycles(self): """ Updates the minimum duty cycles defining normal activity for a column. A column with activity duty cycle below this minimum threshold is boosted. """ if self._globalInhibition or self._inhibitionRadius > self._numInputs: self._updateMinDutyCyclesGlobal() ...
def _updateMinDutyCyclesGlobal(self): """ Updates the minimum duty cycles in a global fashion. Sets the minimum duty cycles for the overlap all columns to be a percent of the maximum in the region, specified by minPctOverlapDutyCycle. Functionality it is equivalent to _updateMinDutyCyclesLocal, but ...
def _updateMinDutyCyclesLocal(self): """ Updates the minimum duty cycles. The minimum duty cycles are determined locally. Each column's minimum duty cycles are set to be a percent of the maximum duty cycles in the column's neighborhood. Unlike _updateMinDutyCyclesGlobal, here the values can be quite...
def _updateDutyCycles(self, overlaps, activeColumns): """ Updates the duty cycles for each column. The OVERLAP duty cycle is a moving average of the number of inputs which overlapped with the each column. The ACTIVITY duty cycles is a moving average of the frequency of activation for each column. ...
def _updateInhibitionRadius(self): """ Update the inhibition radius. The inhibition radius is a measure of the square (or hypersquare) of columns that each a column is "connected to" on average. Since columns are are not connected to each other directly, we determine this quantity by first figuring ...
def _avgColumnsPerInput(self): """ The average number of columns per input, taking into account the topology of the inputs and columns. This value is used to calculate the inhibition radius. This function supports an arbitrary number of dimensions. If the number of column dimensions does not match t...
def _avgConnectedSpanForColumn1D(self, columnIndex): """ The range of connected synapses for column. This is used to calculate the inhibition radius. This variation of the function only supports a 1 dimensional column topology. Parameters: ---------------------------- :param columnIndex: ...
def _avgConnectedSpanForColumn2D(self, columnIndex): """ The range of connectedSynapses per column, averaged for each dimension. This value is used to calculate the inhibition radius. This variation of the function only supports a 2 dimensional column topology. Parameters: --------------------...
def _bumpUpWeakColumns(self): """ This method increases the permanence values of synapses of columns whose activity level has been too low. Such columns are identified by having an overlap duty cycle that drops too much below those of their peers. The permanence values for such columns are increased...
def _raisePermanenceToThreshold(self, perm, mask): """ This method ensures that each column has enough connections to input bits to allow it to become active. Since a column must have at least 'self._stimulusThreshold' overlaps in order to be considered during the inhibition phase, columns without s...
def _updatePermanencesForColumn(self, perm, columnIndex, raisePerm=True): """ This method updates the permanence matrix with a column's new permanence values. The column is identified by its index, which reflects the row in the matrix, and the permanence is given in 'dense' form, i.e. a full array c...
def _initPermConnected(self): """ Returns a randomly generated permanence value for a synapses that is initialized in a connected state. The basic idea here is to initialize permanence values very close to synPermConnected so that a small number of learning steps could make it disconnected or connec...
def _initPermNonConnected(self): """ Returns a randomly generated permanence value for a synapses that is to be initialized in a non-connected state. """ p = self._synPermConnected * self._random.getReal64() # Ensure we don't have too much unnecessary precision. A full 64 bits of # precisio...
def _initPermanence(self, potential, connectedPct): """ Initializes the permanences of a column. The method returns a 1-D array the size of the input, where each entry in the array represents the initial permanence value between the input bit at the particular index in the array, and the column repr...
def _mapColumn(self, index): """ Maps a column to its respective input index, keeping to the topology of the region. It takes the index of the column as an argument and determines what is the index of the flattened input vector that is to be the center of the column's potential pool. It distributes ...
def _mapPotential(self, index): """ Maps a column to its input bits. This method encapsulates the topology of the region. It takes the index of the column as an argument and determines what are the indices of the input vector that are located within the column's potential pool. The return value is a...
def _updateBoostFactorsGlobal(self): """ Update boost factors when global inhibition is used """ # When global inhibition is enabled, the target activation level is # the sparsity of the spatial pooler if (self._localAreaDensity > 0): targetDensity = self._localAreaDensity else: ...
def _updateBoostFactorsLocal(self): """ Update boost factors when local inhibition is used """ # Determine the target activation level for each column # The targetDensity is the average activeDutyCycles of the neighboring # columns of each column. targetDensity = numpy.zeros(self._numColumns...
def _calculateOverlap(self, inputVector): """ This function determines each column's overlap with the current input vector. The overlap of a column is the number of synapses for that column that are connected (permanence value is greater than '_synPermConnected') to input bits which are turned on. T...
def _inhibitColumns(self, overlaps): """ Performs inhibition. This method calculates the necessary values needed to actually perform inhibition and then delegates the task of picking the active columns to helper functions. Parameters: ---------------------------- :param overlaps: an array c...
def _inhibitColumnsGlobal(self, overlaps, density): """ Perform global inhibition. Performing global inhibition entails picking the top 'numActive' columns with the highest overlap score in the entire region. At most half of the columns in a local neighborhood are allowed to be active. Columns with ...
def _inhibitColumnsLocal(self, overlaps, density): """ Performs local inhibition. Local inhibition is performed on a column by column basis. Each column observes the overlaps of its neighbors and is selected if its overlap score is within the top 'numActive' in its local neighborhood. At most half o...
def _getColumnNeighborhood(self, centerColumn): """ Gets a neighborhood of columns. Simply calls topology.neighborhood or topology.wrappingNeighborhood A subclass can insert different topology behavior by overriding this method. :param centerColumn (int) The center of the neighborhood. @...
def _getInputNeighborhood(self, centerInput): """ Gets a neighborhood of inputs. Simply calls topology.wrappingNeighborhood or topology.neighborhood. A subclass can insert different topology behavior by overriding this method. :param centerInput (int) The center of the neighborhood. @ret...
def _seed(self, seed=-1): """ Initialize the random seed """ if seed != -1: self._random = NupicRandom(seed) else: self._random = NupicRandom()
def handleGetValue(self, topContainer): """ This method overrides ValueGetterBase's "pure virtual" method. It returns the referenced value. The derived class is NOT responsible for fully resolving the reference'd value in the event the value resolves to another ValueGetterBase-based instance -- this i...
def Array(dtype, size=None, ref=False): """Factory function that creates typed Array or ArrayRef objects dtype - the data type of the array (as string). Supported types are: Byte, Int16, UInt16, Int32, UInt32, Int64, UInt64, Real32, Real64 size - the size of the array. Must be positive integer. """ def...
def getInputNames(self): """ Returns list of input names in spec. """ inputs = self.getSpec().inputs return [inputs.getByIndex(i)[0] for i in xrange(inputs.getCount())]
def getOutputNames(self): """ Returns list of output names in spec. """ outputs = self.getSpec().outputs return [outputs.getByIndex(i)[0] for i in xrange(outputs.getCount())]
def _getParameterMethods(self, paramName): """Returns functions to set/get the parameter. These are the strongly typed functions get/setParameterUInt32, etc. The return value is a pair: setfunc, getfunc If the parameter is not available on this region, setfunc/getfunc are None. """ if pa...
def getParameter(self, paramName): """Get parameter value""" (setter, getter) = self._getParameterMethods(paramName) if getter is None: import exceptions raise exceptions.Exception( "getParameter -- parameter name '%s' does not exist in region %s of type %s" % (paramName, sel...
def setParameter(self, paramName, value): """Set parameter value""" (setter, getter) = self._getParameterMethods(paramName) if setter is None: import exceptions raise exceptions.Exception( "setParameter -- parameter name '%s' does not exist in region %s of type %s" % (paramNa...
def _getRegions(self): """Get the collection of regions in a network This is a tricky one. The collection of regions returned from from the internal network is a collection of internal regions. The desired collection is a collelcion of net.Region objects that also points to this network (net.networ...
def getRegionsByType(self, regionClass): """ Gets all region instances of a given class (for example, nupic.regions.sp_region.SPRegion). """ regions = [] for region in self.regions.values(): if type(region.getSelf()) is regionClass: regions.append(region) return regions
def getSpec(cls): """ Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getSpec`. """ ns = dict( description=SDRClassifierRegion.__doc__, singleNodeOnly=True, inputs=dict( actValueIn=dict( description="Actual value of the field to predict. Only taken " ...
def initialize(self): """ Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.initialize`. Is called once by NuPIC before the first call to compute(). Initializes self._sdrClassifier if it is not already initialized. """ if self._sdrClassifier is None: self._sdrClassifier = SDRClass...
def setParameter(self, name, index, value): """ Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.setParameter`. """ if name == "learningMode": self.learningMode = bool(int(value)) elif name == "inferenceMode": self.inferenceMode = bool(int(value)) else: return PyRegion...
def writeToProto(self, proto): """ Write state to proto object. :param proto: SDRClassifierRegionProto capnproto object """ proto.implementation = self.implementation proto.steps = self.steps proto.alpha = self.alpha proto.verbosity = self.verbosity proto.maxCategoryCount = self.max...
def readFromProto(cls, proto): """ Read state from proto object. :param proto: SDRClassifierRegionProto capnproto object """ instance = cls() instance.implementation = proto.implementation instance.steps = proto.steps instance.stepsList = [int(i) for i in proto.steps.split(",")] in...
def compute(self, inputs, outputs): """ Process one input sample. This method is called by the runtime engine. :param inputs: (dict) mapping region input names to numpy.array values :param outputs: (dict) mapping region output names to numpy.arrays that should be populated with output v...
def customCompute(self, recordNum, patternNZ, classification): """ Just return the inference value from one input sample. The actual learning happens in compute() -- if, and only if learning is enabled -- which is called when you run the network. .. warning:: This method is deprecated and exists on...
def getOutputElementCount(self, outputName): """ Overrides :meth:`nupic.bindings.regions.PyRegion.PyRegion.getOutputElementCount`. """ if outputName == "categoriesOut": return len(self.stepsList) elif outputName == "probabilities": return len(self.stepsList) * self.maxCategoryCount e...
def run(self): """ Runs the OPF Model Parameters: ------------------------------------------------------------------------- retval: (completionReason, completionMsg) where completionReason is one of the ClientJobsDAO.CMPL_REASON_XXX equates. """ # ----------------...
def __runTaskMainLoop(self, numIters, learningOffAt=None): """ Main loop of the OPF Model Runner. Parameters: ----------------------------------------------------------------------- recordIterator: Iterator for counting number of records (see _runTask) learningOffAt: If not None, learning i...