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def _store_N_samples(self, start, ipyclient, quiet=False):
"""
Find all quartets of samples and store in a large array
A chunk size is assigned for sampling from the array of quartets
based on the number of cpus available. This should be relatively
large so that we don't spend ... |
def _dump_qmc(self):
"""
Writes the inferred quartet sets from the database to a text
file to be used as input for QMC. Quartets that had no information
available (i.e., no SNPs) were written to the database as 0,0,0,0
and are excluded here from the output.
"""
... |
def _run_qmc(self, boot):
"""
Runs quartet max-cut QMC on the quartets qdump file.
"""
## build command
self._tmp = os.path.join(self.dirs, ".tmptre")
cmd = [ip.bins.qmc, "qrtt="+self.files.qdump, "otre="+self._tmp]
## run it
proc = subprocess.Popen(cmd,... |
def _compute_stats(self, start, ipyclient, quiet=False):
"""
Compute sampling stats and consens trees.
"""
## get name indices
names = self.samples
## make a consensus from bootstrap reps.
if self.checkpoint.boots:
tre = ete3.Tree(self.trees... |
def _load(self, name, workdir, quiet=False):
"""
Load a JSON serialized tetrad instance to continue from a checkpoint.
"""
## load the JSON string and try with name+.json
path = os.path.join(workdir, name)
if not path.endswith(".tet.json"):
path += ".tet.json... |
def _inference(self, start, ipyclient, quiet):
"""
Sends slices of quartet sets to parallel engines for computing,
enters results into output database, sends finished quartet sets
to QMC for tree inference, and prints progress bars.
"""
## load-balancer for single-threa... |
def _insert_to_array(self, chunk, results):
"""
Enters results arrays into the HDF5 database.
"""
## two result arrs
chunksize = self._chunksize
qrts, invs = results
## enter into db
with h5py.File(self.database.output, 'r+') as io5:
io5['qua... |
def run(self, force=False, quiet=False, ipyclient=None):
"""
Parameters
----------
force (bool):
Overwrite existing results for object with the same name
and workdir as this one.
verbose (int):
0=primt nothing; 1=print progress bars; 2=print pr... |
def start_ipcluster(data):
""" Start ipcluster """
## if MPI argument then use --ip arg to view all sockets
iparg = ""
if "MPI" in data._ipcluster["engines"]:
iparg = "--ip=*"
## make ipcluster arg call
standard = """
ipcluster start
--daemonize
... |
def register_ipcluster(data):
"""
The name is a unique id that keeps this __init__ of ipyrad distinct
from interfering with other ipcontrollers. Run statements are wrapped
so that ipcluster will be killed on exit.
"""
## check if this pid already has a running cluster
data._ipcluster["cluste... |
def get_client(cluster_id, profile, engines, timeout, cores, quiet, spacer, **kwargs):
"""
Creates a client to view ipcluster engines for a given profile and
returns it with at least one engine spun up and ready to go. If no
engines are found after nwait amount of time then an error is raised.
If... |
def memoize(func):
""" Memoization decorator for a function taking one or more arguments. """
class Memodict(dict):
""" just a dict"""
def __getitem__(self, *key):
return dict.__getitem__(self, key)
def __missing__(self, key):
""" this makes it faster """
... |
def ambigcutters(seq):
"""
Returns both resolutions of a cut site that has an ambiguous base in
it, else the single cut site
"""
resos = []
if any([i in list("RKSYWM") for i in seq]):
for base in list("RKSYWM"):
if base in seq:
resos.append(seq.replace(base, A... |
def splitalleles(consensus):
""" takes diploid consensus alleles with phase data stored as a mixture
of upper and lower case characters and splits it into 2 alleles """
## store two alleles, allele1 will start with bigbase
allele1 = list(consensus)
allele2 = list(consensus)
hidx = [i for (i, j)... |
def comp(seq):
""" returns a seq with complement. Preserves little n's for splitters."""
## makes base to its small complement then makes upper
return seq.replace("A", 't')\
.replace('T', 'a')\
.replace('C', 'g')\
.replace('G', 'c')\
.replace('n', 'Z')... |
def fullcomp(seq):
""" returns complement of sequence including ambiguity characters,
and saves lower case info for multiple hetero sequences"""
## this is surely not the most efficient...
seq = seq.replace("A", 'u')\
.replace('T', 'v')\
.replace('C', 'p')\
.replac... |
def fastq_touchup_for_vsearch_merge(read, outfile, reverse=False):
""" option to change orientation of reads and sets Qscore to B """
counts = 0
with open(outfile, 'w') as out:
## read in paired end read files 4 lines at a time
if read.endswith(".gz"):
fr1 = gzip.open(read, ... |
def merge_pairs_after_refmapping(data, two_files, merged_out):
"""
A function to merge fastq files produced by bam2fq.
"""
## create temp files
nonmerged1 = tempfile.NamedTemporaryFile(
mode='wb',
dir=data.dirs.edits,
suffix="_nonmerged_R1_.fastq").name
nonmerged2 = te... |
def merge_after_pysam(data, clust):
"""
This is for pysam post-flight merging. The input is a cluster
for an individual locus. We have to split the clusters, write
R1 and R2 to files then call merge_pairs(). This is not ideal,
it's slow, but it works. This is the absolute worst way to do this,
i... |
def merge_pairs(data, two_files, merged_out, revcomp, merge):
"""
Merge PE reads. Takes in a list of unmerged files [r1, r2] and the
filehandle to write merged data to, and it returns the number of reads
that were merged (overlapping). If merge==0 then only concat pairs (nnnn),
no merging in vsearch... |
def revcomp(sequence):
"returns reverse complement of a string"
sequence = sequence[::-1].strip()\
.replace("A", "t")\
.replace("T", "a")\
.replace("C", "g")\
.replace("G", "c").upper()
return... |
def clustdealer(pairdealer, optim):
""" return optim clusters given iterators, and whether it got all or not"""
ccnt = 0
chunk = []
while ccnt < optim:
## try refreshing taker, else quit
try:
taker = itertools.takewhile(lambda x: x[0] != "//\n", pairdealer)
oneclu... |
def progressbar(njobs, finished, msg="", spacer=" "):
""" prints a progress bar """
if njobs:
progress = 100*(finished / float(njobs))
else:
progress = 100
hashes = '#'*int(progress/5.)
nohash = ' '*int(20-len(hashes))
if not ipyrad.__interactive__:
msg = msg.rs... |
def get_threaded_view(ipyclient, split=True):
""" gets optimum threaded view of ids given the host setup """
## engine ids
## e.g., [0, 1, 2, 3, 4, 5, 6, 7, 8]
eids = ipyclient.ids
## get host names
## e.g., ['a', 'a', 'b', 'b', 'a', 'c', 'c', 'c', 'c']
dview = ipyclient.direct_view()
h... |
def detect_cpus():
"""
Detects the number of CPUs on a system. This is better than asking
ipyparallel since ipp has to wait for Engines to spin up.
"""
# Linux, Unix and MacOS:
if hasattr(os, "sysconf"):
if os.sysconf_names.has_key("SC_NPROCESSORS_ONLN"):
# Linux & Unix:
... |
def _call_structure(mname, ename, sname, name, workdir, seed, ntaxa, nsites, kpop, rep):
""" make the subprocess call to structure """
## create call string
outname = os.path.join(workdir, "{}-K-{}-rep-{}".format(name, kpop, rep))
cmd = ["structure",
"-m", mname,
"-e", ename,
... |
def _get_clumpp_table(self, kpop, max_var_multiple, quiet):
""" private function to clumpp results"""
## concat results for k=x
reps, excluded = _concat_reps(self, kpop, max_var_multiple, quiet)
if reps:
ninds = reps[0].inds
nreps = len(reps)
else:
ninds = nreps = 0
if n... |
def _concat_reps(self, kpop, max_var_multiple, quiet, **kwargs):
"""
Combine structure replicates into a single indfile,
returns nreps, ninds. Excludes reps with too high of
variance (set with max_variance_multiplier) to exclude
runs that did not converge.
"""
## make an output handle... |
def _get_evanno_table(self, kpops, max_var_multiple, quiet):
"""
Calculates Evanno method K value scores for a series
of permuted clumpp results.
"""
## iterate across k-vals
kpops = sorted(kpops)
replnliks = []
for kpop in kpops:
## concat results for k=x
reps, exclud... |
def result_files(self):
""" returns a list of files that have finished structure """
reps = OPJ(self.workdir, self.name+"-K-*-rep-*_f")
repfiles = glob.glob(reps)
return repfiles |
def run(self,
kpop,
nreps,
ipyclient=None,
seed=12345,
force=False,
quiet=False,
):
"""
submits a job to run on the cluster and returns an asynchronous result
object. K is the number of populations, randomseed if not set will be
... |
def write_structure_files(self, kpop, rep=1):
"""
Prepares input files for running structure. Users typically do not need
to call this function since it is called internally by .run(). But it
is optionally available here in case users wish to generate files and
run structure se... |
def get_clumpp_table(self, kvalues, max_var_multiple=0, quiet=False):
"""
Returns a dictionary of results tables for making structure barplots.
This calls the same functions used in get_evanno_table() to call
CLUMPP to permute replicates.
Parameters:
-----------
... |
def get_evanno_table(self, kvalues, max_var_multiple=0, quiet=False):
"""
Calculates the Evanno table from results files for tests with
K-values in the input list kvalues. The values lnPK, lnPPK,
and deltaK are calculated. The max_var_multiplier arg can be used
to exclude result... |
def parse(self, psearch, dsearch):
""" parse an _f structure output file """
stable = ""
with open(self.repfile) as orep:
dat = orep.readlines()
for line in dat:
## stat lines
if "Estimated Ln Prob of Data" in line:
self... |
def _call_raxml(command_list):
""" call the command as sps """
proc = subprocess.Popen(
command_list,
stderr=subprocess.STDOUT,
stdout=subprocess.PIPE
)
comm = proc.communicate()
return comm |
def _command_list(self):
""" build the command list """
cmd = [self.params.binary,
"-f", str(self.params.f),
"-T", str(self.params.T),
"-m", str(self.params.m),
"-N", str(self.params.N),
"-x", str(self.params.x),
... |
def run(self,
ipyclient=None,
quiet=False,
force=False,
block=False,
):
"""
Submits raxml job to run. If no ipyclient object is provided then
the function will block until the raxml run is finished. If an ipyclient
is provided then the job is se... |
def _get_binary(self):
""" find binaries available"""
## check for binary
backup_binaries = ["raxmlHPC-PTHREADS", "raxmlHPC-PTHREADS-SSE3"]
## check user binary first, then backups
for binary in [self.params.binary] + backup_binaries:
proc = subprocess.Popen(["which... |
def share_matrix(locifile, tree=None, nameorder=None):
"""
returns a matrix of shared RAD-seq data
Parameters:
-----------
locifile (str):
Path to a ipyrad .loci file.
tree (str):
Path to Newick file or a Newick string representation of
a tree. If used, names will... |
def _getarray(loci, snames):
"""
parse loci list and return presence/absence matrix
ordered by the tips on the tree or list of names.
"""
## make an empty matrix
lxs = np.zeros((len(snames), len(loci)), dtype=np.uint64)
## fill the matrix
for loc in xrange(len(loci)):
for seq i... |
def batch(
baba,
ipyclient=None,
):
"""
distributes jobs to the parallel client
"""
## parse args
handle = baba.data
taxdicts = baba.tests
mindicts = baba.params.mincov
nboots = baba.params.nboots
## if ms generator make into reusable list
sims = 0
if isinstance... |
def dstat(inarr, taxdict, mindict=1, nboots=1000, name=0):
""" private function to perform a single D-stat test"""
#if isinstance(inarr, str):
# with open(inarr, 'r') as infile:
# inarr = infile.read().strip().split("|\n")
# ## get data as an array from loci file
# ## if loci-list th... |
def _loci_to_arr(loci, taxdict, mindict):
"""
return a frequency array from a loci file for all loci with taxa from
taxdict and min coverage from mindict.
"""
## make the array (4 or 5) and a mask array to remove loci without cov
nloci = len(loci)
maxlen = np.max(np.array([len(locus.split... |
def _get_boots(arr, nboots):
"""
return array of bootstrap D-stats
"""
## hold results (nboots, [dstat, ])
boots = np.zeros((nboots,))
## iterate to fill boots
for bidx in xrange(nboots):
## sample with replacement
lidx = np.random.randint(0, arr.shape[0], arr.shape[0])
... |
def _get_signif_4(arr, nboots):
"""
returns a list of stats and an array of dstat boots. Stats includes
z-score and two-sided P-value.
"""
abba, baba, dst = _prop_dstat(arr)
boots = _get_boots(arr, nboots)
estimate, stddev = (boots.mean(), boots.std())
zscore = 0.
if stddev:
... |
def _get_signif_5(arr, nboots):
"""
returns a list of stats and an array of dstat boots. Stats includes
z-score and two-sided P-value.
"""
statsarr = np.zeros((3, 7), dtype=np.float64)
bootsarr = np.zeros((3, nboots))
idx = 0
for acol in [2, 3, 4]:
rows = np.array([0, 1, acol,... |
def _simulate(self, nreps, admix=None, Ns=500000, gen=20):
"""
Enter a baba.Tree object in which the 'tree' attribute (newick
derived tree) has edge lengths in units of generations. You can
use the 'gen' parameter to multiply branch lengths by a constant.
Parameters:
-----------
nreps: ... |
def taxon_table(self):
"""
Returns the .tests list of taxa as a pandas dataframe.
By auto-generating this table from tests it means that
the table itself cannot be modified unless it is returned
and saved.
"""
if self.tests:
keys = sorted(self.test... |
def run(self,
ipyclient=None,
):
"""
Run a batch of dstat tests on a list of tests, where each test is
a dictionary mapping sample names to {p1 - p4} (and sometimes p5).
Parameters modifying the behavior of the run, such as the number
of bootstrap replicates (n... |
def plot(self,
show_test_labels=True,
use_edge_lengths=True,
collapse_outgroup=False,
pct_tree_x=0.5,
pct_tree_y=0.2,
subset_tests=None,
#toytree_kwargs=None,
*args,
**kwargs):
"""
Draw a multi-panel figure with tree... |
def loci2multinex(name,
locifile,
subsamples=None,
outdir=None,
maxloci=None,
minSNPs=1,
seed=12345,
mcmc_burnin=int(1e6),
mcmc_ngen=int(2e6),
mcmc_sample_f... |
def nexmake(mdict, nlocus, dirs, mcmc_burnin, mcmc_ngen, mcmc_sample_freq):
"""
function that takes a dictionary mapping names to
sequences, and a locus number, and writes it as a NEXUS
file with a mrbayes analysis block.
"""
## create matrix as a string
max_name_len = max([len(i) for i in... |
def call_fastq_dump_on_SRRs(self, srr, outname, paired):
"""
calls fastq-dump on SRRs, relabels fastqs by their accession
names, and writes them to the workdir. Saves temp sra files
in the designated tmp folder and immediately removes them.
"""
## build command for fastq-dumping
fd_cmd = [
... |
def fields_checker(fields):
"""
returns a fields argument formatted as a list of strings.
and doesn't allow zero.
"""
## make sure fields will work
if isinstance(fields, int):
fields = str(fields)
if isinstance(fields, str):
if "," in fields:
fields = [str(i) for ... |
def run(self,
force=False,
ipyclient=None,
name_fields=30,
name_separator="_",
dry_run=False):
"""
Download the accessions into a the designated workdir.
Parameters
----------
force: (bool)
If force=True then existing fil... |
def _submit_jobs(self,
force,
ipyclient,
name_fields,
name_separator,
dry_run):
"""
Download the accessions into a the designated workdir.
If file already exists it will only be overwritten if
force=True. Temporary files are removed.
... |
def fetch_runinfo(self, fields=None, quiet=False):
"""
Call esearch to grep SRR info for a project (SRP). Use the command
sra.fetch_fields to see available fields to be fetched. This function
returns a DataFrame with runinfo for the selected fields.
Parameters:
---------... |
def Async(cls, token, session=None, **options):
"""Returns the client in async mode."""
return cls(token, session=session, is_async=True, **options) |
def get_constants(self, **params: keys):
"""Get the CR Constants
Parameters
----------
\*\*keys: Optional[list] = None
Filter which keys should be included in the
response
\*\*exclude: Optional[list] = None
Filter which keys should be excluded... |
def get_player(self, *tags: crtag, **params: keys):
"""Get a player information
Parameters
----------
\*tags: str
Valid player tags. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
\*\*keys: Optional[list] = None
Filter which keys should be... |
def get_player_verify(self, tag: crtag, apikey: str, **params: keys):
"""Check the API Key of a player.
This endpoint has been **restricted** to
certain members of the community
Parameters
----------
tag: str
A valid tournament tag. Minimum length: 3
... |
def get_player_battles(self, *tags: crtag, **params: keys):
"""Get a player's battle log
Parameters
----------
\*tags: str
Valid player tags. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
\*\*keys: Optional[list] = None
Filter which keys ... |
def get_clan(self, *tags: crtag, **params: keys):
"""Get a clan information
Parameters
----------
\*tags: str
Valid clan tags. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
\*\*keys: Optional[list] = None
Filter which keys should be inclu... |
def get_tracking_clans(self, **params: keys):
"""Get a list of clans that are being
tracked by having either cr-api.com or
royaleapi.com in the description
Parameters
----------
\*\*keys: Optional[list] = None
Filter which keys should be included in the
... |
def get_clan_tracking(self, *tags: crtag, **params: keys):
"""Returns if the clan is currently being tracked
by the API by having either cr-api.com or royaleapi.com
in the clan description
Parameters
----------
\*tags: str
Valid clan tags. Minimum length: 3
... |
def get_clan_war(self, tag: crtag, **params: keys):
"""Get inforamtion about a clan's current clan war
Parameters
----------
*tag: str
A valid clan tag. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
\*\*keys: Optional[list] = None
Filter ... |
def get_tournament(self, tag: crtag, **params: keys):
"""Get a tournament information
Parameters
----------
tag: str
A valid tournament tag. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
\*\*keys: Optional[list] = None
Filter which keys s... |
def search_tournaments(self, **params: keys):
"""Search for a tournament
Parameters
----------
name: str
The name of the tournament
\*\*keys: Optional[list] = None
Filter which keys should be included in the
response
\*\*exclude: Optio... |
def get_top_war_clans(self, country_key='', **params: keys):
"""Get a list of top clans by war
location_id: Optional[str] = ''
A location ID or '' (global)
See https://github.com/RoyaleAPI/cr-api-data/blob/master/json/regions.json
for a list of acceptable location ID... |
def get_top_players(self, country_key='', **params: keys):
"""Get a list of top players
location_id: Optional[str] = ''
A location ID or '' (global)
See https://github.com/RoyaleAPI/cr-api-data/blob/master/json/regions.json
for a list of acceptable location IDs
... |
def get_popular_clans(self, **params: keys):
"""Get a list of most queried clans
\*\*keys: Optional[list] = None
Filter which keys should be included in the
response
\*\*exclude: Optional[list] = None
Filter which keys should be excluded from the
... |
def get_popular_players(self, **params: keys):
"""Get a list of most queried players
\*\*keys: Optional[list] = None
Filter which keys should be included in the
response
\*\*exclude: Optional[list] = None
Filter which keys should be excluded from the
... |
def get_popular_tournaments(self, **params: keys):
"""Get a list of most queried tournaments
\*\*keys: Optional[list] = None
Filter which keys should be included in the
response
\*\*exclude: Optional[list] = None
Filter which keys should be excluded from the
... |
def get_popular_decks(self, **params: keys):
"""Get a list of most queried decks
\*\*keys: Optional[list] = None
Filter which keys should be included in the
response
\*\*exclude: Optional[list] = None
Filter which keys should be excluded from the
... |
def get_known_tournaments(self, **params: tournamentfilter):
"""Get a list of queried tournaments
\*\*keys: Optional[list] = None
Filter which keys should be included in the
response
\*\*exclude: Optional[list] = None
Filter which keys should be excluded from... |
def get_player(self, tag: crtag, timeout=None):
"""Get information about a player
Parameters
----------
tag: str
A valid tournament tag. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
timeout: Optional[int] = None
Custom timeout that overw... |
def get_player_verify(self, tag: crtag, apikey: str, timeout=None):
"""Check the API Key of a player.
This endpoint has been **restricted** to
certain members of the community
Raises BadRequest if the apikey is invalid
Parameters
----------
tag: str
... |
def get_player_battles(self, tag: crtag, **params: keys):
"""Get a player's battle log
Parameters
----------
tag: str
A valid tournament tag. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
\*\*limit: Optional[int] = None
Limit the number o... |
def get_player_chests(self, tag: crtag, timeout: int=None):
"""Get information about a player's chest cycle
Parameters
----------
tag: str
A valid tournament tag. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
timeout: Optional[int] = None
... |
def get_clan(self, tag: crtag, timeout: int=None):
"""Get inforamtion about a clan
Parameters
----------
tag: str
A valid tournament tag. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
timeout: Optional[int] = None
Custom timeout that over... |
def search_clans(self, **params: clansearch):
"""Search for a clan. At least one
of the filters must be present
Parameters
----------
name: Optional[str]
The name of a clan
(has to be at least 3 characters long)
locationId: Optional[int]
... |
def get_clan_war(self, tag: crtag, timeout: int=None):
"""Get inforamtion about a clan's current clan war
Parameters
----------
tag: str
A valid tournament tag. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
timeout: Optional[int] = None
C... |
def get_tournament(self, tag: crtag, timeout=0):
"""Get a tournament information
Parameters
----------
tag: str
A valid tournament tag. Minimum length: 3
Valid characters: 0289PYLQGRJCUV
\*\*timeout: Optional[int] = None
Custom timeout that ov... |
def search_tournaments(self, name: str, **params: keys):
"""Search for a tournament by its name
Parameters
----------
name: str
The name of a tournament
\*\*limit: Optional[int] = None
Limit the number of items returned in the response
\*\*timeout... |
def get_all_cards(self, timeout: int=None):
"""Get a list of all the cards in the game
Parameters
----------
timeout: Optional[int] = None
Custom timeout that overwrites Client.timeout
"""
url = self.api.CARDS
return self._get_model(url, timeout=timeo... |
def get_all_locations(self, timeout: int=None):
"""Get a list of all locations
Parameters
----------
timeout: Optional[int] = None
Custom timeout that overwrites Client.timeout
"""
url = self.api.LOCATIONS
return self._get_model(url, timeout=timeout) |
def get_location(self, location_id: int, timeout: int=None):
"""Get a location information
Parameters
----------
location_id: int
A location ID
See https://github.com/RoyaleAPI/cr-api-data/blob/master/json/regions.json
for a list of acceptable locatio... |
def get_top_clans(self, location_id='global', **params: keys):
"""Get a list of top clans by trophy
Parameters
----------
location_id: Optional[str] = 'global'
A location ID or global
See https://github.com/RoyaleAPI/cr-api-data/blob/master/json/regions.json
... |
def get_top_players(self, location_id='global', **params: keys):
"""Get a list of top players
Parameters
----------
location_id: Optional[str] = 'global'
A location ID or global
See https://github.com/RoyaleAPI/cr-api-data/blob/master/json/regions.json
... |
def get_clan_image(self, obj: BaseAttrDict):
"""Get the clan badge image URL
Parameters
---------
obj: official_api.models.BaseAttrDict
An object that has the clan badge ID either in ``.clan.badge_id`` or ``.badge_id``
Can be a clan or a profile for example.
... |
def get_arena_image(self, obj: BaseAttrDict):
"""Get the arena image URL
Parameters
---------
obj: official_api.models.BaseAttrDict
An object that has the arena ID in ``.arena.id``
Can be ``Profile`` for example.
Returns None or str
"""
b... |
def get_card_info(self, card_name: str):
"""Returns card info from constants
Parameters
---------
card_name: str
A card name
Returns None or Constants
"""
for c in self.constants.cards:
if c.name == card_name:
return c |
def get_rarity_info(self, rarity: str):
"""Returns card info from constants
Parameters
---------
rarity: str
A rarity name
Returns None or Constants
"""
for c in self.constants.rarities:
if c.name == rarity:
return c |
def get_deck_link(self, deck: BaseAttrDict):
"""Form a deck link
Parameters
---------
deck: official_api.models.BaseAttrDict
An object is a deck. Can be retrieved from ``Player.current_deck``
Returns str
"""
deck_link = 'https://link.clashroyale.com/... |
def get_datetime(self, timestamp: str, unix=True):
"""Converts a %Y%m%dT%H%M%S.%fZ to a UNIX timestamp
or a datetime.datetime object
Parameters
---------
timestamp: str
A timstamp in the %Y%m%dT%H%M%S.%fZ format, usually returned by the API
in the ``creat... |
def get_clan(self):
"""(a)sync function to return clan."""
try:
return self.client.get_clan(self.clan.tag)
except AttributeError:
try:
return self.client.get_clan(self.tag)
except AttributeError:
raise ValueError('This player do... |
def refresh(self):
"""(a)sync refresh the data."""
if self.client.is_async:
return self._arefresh()
data, cached, ts, response = self.client._request(self.response.url, timeout=None, refresh=True)
return self.from_data(data, cached, ts, response) |
def typecasted(func):
"""Decorator that converts arguments via annotations."""
signature = inspect.signature(func).parameters.items()
@wraps(func)
def wrapper(*args, **kwargs):
args = list(args)
new_args = []
new_kwargs = {}
for _, param in signature:
convert... |
def coerce_annotation(ann, namespace):
'''Validate that the annotation has the correct namespace,
and is well-formed.
If the annotation is not of the correct namespace, automatic conversion
is attempted.
Parameters
----------
ann : jams.Annotation
The annotation object in question
... |
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