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rossi_2021

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chipexo
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biology
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Files changed (8) hide show
  1. scripts/ChExMix_Peak_Filter_List_190612_sgd.bed +418 -0
  2. scripts/bam_lookup.txt +1224 -0
  3. scripts/control_lookup.txt +15 -0
  4. scripts/count_tags.sh +81 -0
  5. scripts/nextflow_config.conf +30 -0
  6. scripts/nextflow_params.json +764 -0
  7. scripts/nfcore_chipseq_full_samplesheet.csv +0 -0
  8. scripts/parse_pugh_genomecov_5p.R +133 -0
scripts/ChExMix_Peak_Filter_List_190612_sgd.bed ADDED
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+ /ref/mblab/data/chipexo/raw_bam/Ctk1_REP2.mLb.mkD.sorted.bam
163
+ /ref/mblab/data/chipexo/raw_bam/Ctk2_REP1.mLb.mkD.sorted.bam
164
+ /ref/mblab/data/chipexo/raw_bam/Ctk2_REP2.mLb.mkD.sorted.bam
165
+ /ref/mblab/data/chipexo/raw_bam/Ctk3_REP1.mLb.mkD.sorted.bam
166
+ /ref/mblab/data/chipexo/raw_bam/Ctr9_REP1.mLb.mkD.sorted.bam
167
+ /ref/mblab/data/chipexo/raw_bam/Ctr9_REP2.mLb.mkD.sorted.bam
168
+ /ref/mblab/data/chipexo/raw_bam/Cts1_REP1.mLb.mkD.sorted.bam
169
+ /ref/mblab/data/chipexo/raw_bam/Cup2_REP1.mLb.mkD.sorted.bam
170
+ /ref/mblab/data/chipexo/raw_bam/Cup9_REP1.mLb.mkD.sorted.bam
171
+ /ref/mblab/data/chipexo/raw_bam/Cup9_REP2.mLb.mkD.sorted.bam
172
+ /ref/mblab/data/chipexo/raw_bam/Cyc8_REP1.mLb.mkD.sorted.bam
173
+ /ref/mblab/data/chipexo/raw_bam/Cyc8_REP2.mLb.mkD.sorted.bam
174
+ /ref/mblab/data/chipexo/raw_bam/Dal81_REP1.mLb.mkD.sorted.bam
175
+ /ref/mblab/data/chipexo/raw_bam/Dat1_REP1.mLb.mkD.sorted.bam
176
+ /ref/mblab/data/chipexo/raw_bam/Dat1_REP2.mLb.mkD.sorted.bam
177
+ /ref/mblab/data/chipexo/raw_bam/Dbf4_REP1.mLb.mkD.sorted.bam
178
+ /ref/mblab/data/chipexo/raw_bam/Dbf4_REP2.mLb.mkD.sorted.bam
179
+ /ref/mblab/data/chipexo/raw_bam/Dbp2_REP1.mLb.mkD.sorted.bam
180
+ /ref/mblab/data/chipexo/raw_bam/Dbp2_REP2.mLb.mkD.sorted.bam
181
+ /ref/mblab/data/chipexo/raw_bam/Dbp3_REP1.mLb.mkD.sorted.bam
182
+ /ref/mblab/data/chipexo/raw_bam/Dcc1_REP1.mLb.mkD.sorted.bam
183
+ /ref/mblab/data/chipexo/raw_bam/Dcp1_REP1.mLb.mkD.sorted.bam
184
+ /ref/mblab/data/chipexo/raw_bam/Dcp2_REP1.mLb.mkD.sorted.bam
185
+ /ref/mblab/data/chipexo/raw_bam/Ddp1_REP1.mLb.mkD.sorted.bam
186
+ /ref/mblab/data/chipexo/raw_bam/Dep1_REP1.mLb.mkD.sorted.bam
187
+ /ref/mblab/data/chipexo/raw_bam/Dhh1_REP1.mLb.mkD.sorted.bam
188
+ /ref/mblab/data/chipexo/raw_bam/Dig1_REP1.mLb.mkD.sorted.bam
189
+ /ref/mblab/data/chipexo/raw_bam/Dig1_REP2.mLb.mkD.sorted.bam
190
+ /ref/mblab/data/chipexo/raw_bam/Doa1_REP1.mLb.mkD.sorted.bam
191
+ /ref/mblab/data/chipexo/raw_bam/Dot1_REP1.mLb.mkD.sorted.bam
192
+ /ref/mblab/data/chipexo/raw_bam/DOT5_REP1.mLb.mkD.sorted.bam
193
+ /ref/mblab/data/chipexo/raw_bam/Dot6_REP1.mLb.mkD.sorted.bam
194
+ /ref/mblab/data/chipexo/raw_bam/Dst1_REP1.mLb.mkD.sorted.bam
195
+ /ref/mblab/data/chipexo/raw_bam/Dst1_REP2.mLb.mkD.sorted.bam
196
+ /ref/mblab/data/chipexo/raw_bam/Dus1_REP1.mLb.mkD.sorted.bam
197
+ /ref/mblab/data/chipexo/raw_bam/Eaf3_REP1.mLb.mkD.sorted.bam
198
+ /ref/mblab/data/chipexo/raw_bam/Eaf5_REP1.mLb.mkD.sorted.bam
199
+ /ref/mblab/data/chipexo/raw_bam/Eaf5_REP2.mLb.mkD.sorted.bam
200
+ /ref/mblab/data/chipexo/raw_bam/Eaf6_REP1.mLb.mkD.sorted.bam
201
+ /ref/mblab/data/chipexo/raw_bam/Eaf6_REP2.mLb.mkD.sorted.bam
202
+ /ref/mblab/data/chipexo/raw_bam/Eaf7_REP1.mLb.mkD.sorted.bam
203
+ /ref/mblab/data/chipexo/raw_bam/Ecm15_REP1.mLb.mkD.sorted.bam
204
+ /ref/mblab/data/chipexo/raw_bam/Ecm22_REP1.mLb.mkD.sorted.bam
205
+ /ref/mblab/data/chipexo/raw_bam/Ecm22_REP2.mLb.mkD.sorted.bam
206
+ /ref/mblab/data/chipexo/raw_bam/Ecm5_REP1.mLb.mkD.sorted.bam
207
+ /ref/mblab/data/chipexo/raw_bam/Ecm5_REP2.mLb.mkD.sorted.bam
208
+ /ref/mblab/data/chipexo/raw_bam/Edc3_REP1.mLb.mkD.sorted.bam
209
+ /ref/mblab/data/chipexo/raw_bam/Eds1_REP1.mLb.mkD.sorted.bam
210
+ /ref/mblab/data/chipexo/raw_bam/Ela1_REP1.mLb.mkD.sorted.bam
211
+ /ref/mblab/data/chipexo/raw_bam/Elc1_REP1.mLb.mkD.sorted.bam
212
+ /ref/mblab/data/chipexo/raw_bam/Elf1_REP1.mLb.mkD.sorted.bam
213
+ /ref/mblab/data/chipexo/raw_bam/Elf1_REP2.mLb.mkD.sorted.bam
214
+ /ref/mblab/data/chipexo/raw_bam/Elp2_REP1.mLb.mkD.sorted.bam
215
+ /ref/mblab/data/chipexo/raw_bam/Elp3_REP1.mLb.mkD.sorted.bam
216
+ /ref/mblab/data/chipexo/raw_bam/Elp4_REP1.mLb.mkD.sorted.bam
217
+ /ref/mblab/data/chipexo/raw_bam/Elp6_REP1.mLb.mkD.sorted.bam
218
+ /ref/mblab/data/chipexo/raw_bam/Emi2_REP1.mLb.mkD.sorted.bam
219
+ /ref/mblab/data/chipexo/raw_bam/Erg8_REP1.mLb.mkD.sorted.bam
220
+ /ref/mblab/data/chipexo/raw_bam/Esa1_REP1.mLb.mkD.sorted.bam
221
+ /ref/mblab/data/chipexo/raw_bam/Esa1_REP2.mLb.mkD.sorted.bam
222
+ /ref/mblab/data/chipexo/raw_bam/Esc2_REP1.mLb.mkD.sorted.bam
223
+ /ref/mblab/data/chipexo/raw_bam/Esc2_REP2.mLb.mkD.sorted.bam
224
+ /ref/mblab/data/chipexo/raw_bam/Esc8_REP1.mLb.mkD.sorted.bam
225
+ /ref/mblab/data/chipexo/raw_bam/Ess1_REP1.mLb.mkD.sorted.bam
226
+ /ref/mblab/data/chipexo/raw_bam/Ess1_REP2.mLb.mkD.sorted.bam
227
+ /ref/mblab/data/chipexo/raw_bam/Fap1_REP1.mLb.mkD.sorted.bam
228
+ /ref/mblab/data/chipexo/raw_bam/Fap7_REP1.mLb.mkD.sorted.bam
229
+ /ref/mblab/data/chipexo/raw_bam/Fcp1_REP1.mLb.mkD.sorted.bam
230
+ /ref/mblab/data/chipexo/raw_bam/Fhl1_REP1.mLb.mkD.sorted.bam
231
+ /ref/mblab/data/chipexo/raw_bam/Fhl1_REP2.mLb.mkD.sorted.bam
232
+ /ref/mblab/data/chipexo/raw_bam/Fkh1_REP1.mLb.mkD.sorted.bam
233
+ /ref/mblab/data/chipexo/raw_bam/Fkh1_REP2.mLb.mkD.sorted.bam
234
+ /ref/mblab/data/chipexo/raw_bam/Fkh2_REP1.mLb.mkD.sorted.bam
235
+ /ref/mblab/data/chipexo/raw_bam/Fkh2_REP2.mLb.mkD.sorted.bam
236
+ /ref/mblab/data/chipexo/raw_bam/Fpr3_REP1.mLb.mkD.sorted.bam
237
+ /ref/mblab/data/chipexo/raw_bam/Fpr4_REP1.mLb.mkD.sorted.bam
238
+ /ref/mblab/data/chipexo/raw_bam/Fra1_REP1.mLb.mkD.sorted.bam
239
+ /ref/mblab/data/chipexo/raw_bam/Fsh1_REP1.mLb.mkD.sorted.bam
240
+ /ref/mblab/data/chipexo/raw_bam/Fun30_REP1.mLb.mkD.sorted.bam
241
+ /ref/mblab/data/chipexo/raw_bam/Fun30_REP2.mLb.mkD.sorted.bam
242
+ /ref/mblab/data/chipexo/raw_bam/Fus3_REP1.mLb.mkD.sorted.bam
243
+ /ref/mblab/data/chipexo/raw_bam/Fzf1_REP1.mLb.mkD.sorted.bam
244
+ /ref/mblab/data/chipexo/raw_bam/Fzf1_REP2.mLb.mkD.sorted.bam
245
+ /ref/mblab/data/chipexo/raw_bam/Gal11_REP1.mLb.mkD.sorted.bam
246
+ /ref/mblab/data/chipexo/raw_bam/Gal11_REP2.mLb.mkD.sorted.bam
247
+ /ref/mblab/data/chipexo/raw_bam/Gal3_REP1.mLb.mkD.sorted.bam
248
+ /ref/mblab/data/chipexo/raw_bam/Gal4_REP1.mLb.mkD.sorted.bam
249
+ /ref/mblab/data/chipexo/raw_bam/Gal4_REP2.mLb.mkD.sorted.bam
250
+ /ref/mblab/data/chipexo/raw_bam/Gal83_REP1.mLb.mkD.sorted.bam
251
+ /ref/mblab/data/chipexo/raw_bam/Gat1_REP1.mLb.mkD.sorted.bam
252
+ /ref/mblab/data/chipexo/raw_bam/Gcn4_REP1.mLb.mkD.sorted.bam
253
+ /ref/mblab/data/chipexo/raw_bam/Gcn4_REP2.mLb.mkD.sorted.bam
254
+ /ref/mblab/data/chipexo/raw_bam/Gcn5_REP1.mLb.mkD.sorted.bam
255
+ /ref/mblab/data/chipexo/raw_bam/Gcn5_REP2.mLb.mkD.sorted.bam
256
+ /ref/mblab/data/chipexo/raw_bam/Gcn5_REP3.mLb.mkD.sorted.bam
257
+ /ref/mblab/data/chipexo/raw_bam/Gcr1_REP1.mLb.mkD.sorted.bam
258
+ /ref/mblab/data/chipexo/raw_bam/Gcr1_REP2.mLb.mkD.sorted.bam
259
+ /ref/mblab/data/chipexo/raw_bam/Gdh1_REP1.mLb.mkD.sorted.bam
260
+ /ref/mblab/data/chipexo/raw_bam/Gis1_REP1.mLb.mkD.sorted.bam
261
+ /ref/mblab/data/chipexo/raw_bam/Gis1_REP2.mLb.mkD.sorted.bam
262
+ /ref/mblab/data/chipexo/raw_bam/Gis2_REP1.mLb.mkD.sorted.bam
263
+ /ref/mblab/data/chipexo/raw_bam/Glc7_REP1.mLb.mkD.sorted.bam
264
+ /ref/mblab/data/chipexo/raw_bam/Gln3_REP1.mLb.mkD.sorted.bam
265
+ /ref/mblab/data/chipexo/raw_bam/Gln3_REP2.mLb.mkD.sorted.bam
266
+ /ref/mblab/data/chipexo/raw_bam/God1_REP1.mLb.mkD.sorted.bam
267
+ /ref/mblab/data/chipexo/raw_bam/God1_REP2.mLb.mkD.sorted.bam
268
+ /ref/mblab/data/chipexo/raw_bam/Gpb2_REP1.mLb.mkD.sorted.bam
269
+ /ref/mblab/data/chipexo/raw_bam/Gpn2_REP1.mLb.mkD.sorted.bam
270
+ /ref/mblab/data/chipexo/raw_bam/Gpx2_REP1.mLb.mkD.sorted.bam
271
+ /ref/mblab/data/chipexo/raw_bam/Gre2_REP1.mLb.mkD.sorted.bam
272
+ /ref/mblab/data/chipexo/raw_bam/Gre3_REP1.mLb.mkD.sorted.bam
273
+ /ref/mblab/data/chipexo/raw_bam/Grs1_REP1.mLb.mkD.sorted.bam
274
+ /ref/mblab/data/chipexo/raw_bam/Grx3_REP1.mLb.mkD.sorted.bam
275
+ /ref/mblab/data/chipexo/raw_bam/Grx4_REP1.mLb.mkD.sorted.bam
276
+ /ref/mblab/data/chipexo/raw_bam/Gtr1_REP1.mLb.mkD.sorted.bam
277
+ /ref/mblab/data/chipexo/raw_bam/Gtr2_REP1.mLb.mkD.sorted.bam
278
+ /ref/mblab/data/chipexo/raw_bam/Gts1_REP1.mLb.mkD.sorted.bam
279
+ /ref/mblab/data/chipexo/raw_bam/Gts1_REP2.mLb.mkD.sorted.bam
280
+ /ref/mblab/data/chipexo/raw_bam/Gzf3_REP1.mLb.mkD.sorted.bam
281
+ /ref/mblab/data/chipexo/raw_bam/Gzf3_REP2.mLb.mkD.sorted.bam
282
+ /ref/mblab/data/chipexo/raw_bam/Haa1_REP1.mLb.mkD.sorted.bam
283
+ /ref/mblab/data/chipexo/raw_bam/Hac1_REP1.mLb.mkD.sorted.bam
284
+ /ref/mblab/data/chipexo/raw_bam/Hal9_REP1.mLb.mkD.sorted.bam
285
+ /ref/mblab/data/chipexo/raw_bam/Hal9_REP2.mLb.mkD.sorted.bam
286
+ /ref/mblab/data/chipexo/raw_bam/Ham1_REP1.mLb.mkD.sorted.bam
287
+ /ref/mblab/data/chipexo/raw_bam/Hap1_REP1.mLb.mkD.sorted.bam
288
+ /ref/mblab/data/chipexo/raw_bam/Hap1_REP2.mLb.mkD.sorted.bam
289
+ /ref/mblab/data/chipexo/raw_bam/Hap2_REP1.mLb.mkD.sorted.bam
290
+ /ref/mblab/data/chipexo/raw_bam/Hap2_REP2.mLb.mkD.sorted.bam
291
+ /ref/mblab/data/chipexo/raw_bam/Hap3_REP1.mLb.mkD.sorted.bam
292
+ /ref/mblab/data/chipexo/raw_bam/Hap3_REP2.mLb.mkD.sorted.bam
293
+ /ref/mblab/data/chipexo/raw_bam/Hap5_REP1.mLb.mkD.sorted.bam
294
+ /ref/mblab/data/chipexo/raw_bam/Hap5_REP2.mLb.mkD.sorted.bam
295
+ /ref/mblab/data/chipexo/raw_bam/Hat2_REP1.mLb.mkD.sorted.bam
296
+ /ref/mblab/data/chipexo/raw_bam/Hch1_REP1.mLb.mkD.sorted.bam
297
+ /ref/mblab/data/chipexo/raw_bam/Hcm1_REP1.mLb.mkD.sorted.bam
298
+ /ref/mblab/data/chipexo/raw_bam/Hda1_REP1.mLb.mkD.sorted.bam
299
+ /ref/mblab/data/chipexo/raw_bam/Hda1_REP2.mLb.mkD.sorted.bam
300
+ /ref/mblab/data/chipexo/raw_bam/Hem2_REP1.mLb.mkD.sorted.bam
301
+ /ref/mblab/data/chipexo/raw_bam/Hem2_REP2.mLb.mkD.sorted.bam
302
+ /ref/mblab/data/chipexo/raw_bam/Hhf1_REP1.mLb.mkD.sorted.bam
303
+ /ref/mblab/data/chipexo/raw_bam/Hhf1_REP2.mLb.mkD.sorted.bam
304
+ /ref/mblab/data/chipexo/raw_bam/Hhf2_REP1.mLb.mkD.sorted.bam
305
+ /ref/mblab/data/chipexo/raw_bam/Hhf2_REP2.mLb.mkD.sorted.bam
306
+ /ref/mblab/data/chipexo/raw_bam/Hho1_REP1.mLb.mkD.sorted.bam
307
+ /ref/mblab/data/chipexo/raw_bam/Hho1_REP2.mLb.mkD.sorted.bam
308
+ /ref/mblab/data/chipexo/raw_bam/Hht1_REP1.mLb.mkD.sorted.bam
309
+ /ref/mblab/data/chipexo/raw_bam/Hht1_REP2.mLb.mkD.sorted.bam
310
+ /ref/mblab/data/chipexo/raw_bam/Hht2_REP1.mLb.mkD.sorted.bam
311
+ /ref/mblab/data/chipexo/raw_bam/Hht2_REP2.mLb.mkD.sorted.bam
312
+ /ref/mblab/data/chipexo/raw_bam/Hif1_REP1.mLb.mkD.sorted.bam
313
+ /ref/mblab/data/chipexo/raw_bam/Hir1_REP1.mLb.mkD.sorted.bam
314
+ /ref/mblab/data/chipexo/raw_bam/Hir1_REP2.mLb.mkD.sorted.bam
315
+ /ref/mblab/data/chipexo/raw_bam/Hir2_REP1.mLb.mkD.sorted.bam
316
+ /ref/mblab/data/chipexo/raw_bam/Hir2_REP2.mLb.mkD.sorted.bam
317
+ /ref/mblab/data/chipexo/raw_bam/Hir3_REP1.mLb.mkD.sorted.bam
318
+ /ref/mblab/data/chipexo/raw_bam/Hir3_REP2.mLb.mkD.sorted.bam
319
+ /ref/mblab/data/chipexo/raw_bam/Hmlalpha2_REP1.mLb.mkD.sorted.bam
320
+ /ref/mblab/data/chipexo/raw_bam/Hmo1_REP1.mLb.mkD.sorted.bam
321
+ /ref/mblab/data/chipexo/raw_bam/Hmo1_REP2.mLb.mkD.sorted.bam
322
+ /ref/mblab/data/chipexo/raw_bam/Hms1_REP1.mLb.mkD.sorted.bam
323
+ /ref/mblab/data/chipexo/raw_bam/Hms2_REP1.mLb.mkD.sorted.bam
324
+ /ref/mblab/data/chipexo/raw_bam/Hms2_REP2.mLb.mkD.sorted.bam
325
+ /ref/mblab/data/chipexo/raw_bam/Hmt1_REP1.mLb.mkD.sorted.bam
326
+ /ref/mblab/data/chipexo/raw_bam/Hog1_REP1.mLb.mkD.sorted.bam
327
+ /ref/mblab/data/chipexo/raw_bam/Hom6_REP1.mLb.mkD.sorted.bam
328
+ /ref/mblab/data/chipexo/raw_bam/Hor2_REP1.mLb.mkD.sorted.bam
329
+ /ref/mblab/data/chipexo/raw_bam/Hos1_REP1.mLb.mkD.sorted.bam
330
+ /ref/mblab/data/chipexo/raw_bam/Hos2_REP1.mLb.mkD.sorted.bam
331
+ /ref/mblab/data/chipexo/raw_bam/Hos2_REP2.mLb.mkD.sorted.bam
332
+ /ref/mblab/data/chipexo/raw_bam/Hos3_REP1.mLb.mkD.sorted.bam
333
+ /ref/mblab/data/chipexo/raw_bam/Hos4_REP1.mLb.mkD.sorted.bam
334
+ /ref/mblab/data/chipexo/raw_bam/Hos4_REP2.mLb.mkD.sorted.bam
335
+ /ref/mblab/data/chipexo/raw_bam/Hot1_REP1.mLb.mkD.sorted.bam
336
+ /ref/mblab/data/chipexo/raw_bam/Hot1_REP2.mLb.mkD.sorted.bam
337
+ /ref/mblab/data/chipexo/raw_bam/Hpa3_REP1.mLb.mkD.sorted.bam
338
+ /ref/mblab/data/chipexo/raw_bam/Hpc2_REP1.mLb.mkD.sorted.bam
339
+ /ref/mblab/data/chipexo/raw_bam/Hpc2_REP2.mLb.mkD.sorted.bam
340
+ /ref/mblab/data/chipexo/raw_bam/Hpr1_REP1.mLb.mkD.sorted.bam
341
+ /ref/mblab/data/chipexo/raw_bam/Hpr1_REP2.mLb.mkD.sorted.bam
342
+ /ref/mblab/data/chipexo/raw_bam/Hpt1_REP1.mLb.mkD.sorted.bam
343
+ /ref/mblab/data/chipexo/raw_bam/Hrb1_REP1.mLb.mkD.sorted.bam
344
+ /ref/mblab/data/chipexo/raw_bam/Hrb1_REP2.mLb.mkD.sorted.bam
345
+ /ref/mblab/data/chipexo/raw_bam/Hrr25_REP1.mLb.mkD.sorted.bam
346
+ /ref/mblab/data/chipexo/raw_bam/Hsf1_REP1.mLb.mkD.sorted.bam
347
+ /ref/mblab/data/chipexo/raw_bam/Hsf1_REP2.mLb.mkD.sorted.bam
348
+ /ref/mblab/data/chipexo/raw_bam/Hsf1_REP3.mLb.mkD.sorted.bam
349
+ /ref/mblab/data/chipexo/raw_bam/Hsf1_REP4.mLb.mkD.sorted.bam
350
+ /ref/mblab/data/chipexo/raw_bam/Hsf1_REP5.mLb.mkD.sorted.bam
351
+ /ref/mblab/data/chipexo/raw_bam/Hsl7_REP1.mLb.mkD.sorted.bam
352
+ /ref/mblab/data/chipexo/raw_bam/Hst1_REP1.mLb.mkD.sorted.bam
353
+ /ref/mblab/data/chipexo/raw_bam/Hst1_REP2.mLb.mkD.sorted.bam
354
+ /ref/mblab/data/chipexo/raw_bam/Hst2_REP1.mLb.mkD.sorted.bam
355
+ /ref/mblab/data/chipexo/raw_bam/Hst3_REP1.mLb.mkD.sorted.bam
356
+ /ref/mblab/data/chipexo/raw_bam/Hst3_REP2.mLb.mkD.sorted.bam
357
+ /ref/mblab/data/chipexo/raw_bam/Hta2_REP1.mLb.mkD.sorted.bam
358
+ /ref/mblab/data/chipexo/raw_bam/Hta2_REP2.mLb.mkD.sorted.bam
359
+ /ref/mblab/data/chipexo/raw_bam/Htb2_REP1.mLb.mkD.sorted.bam
360
+ /ref/mblab/data/chipexo/raw_bam/Htb2_REP2.mLb.mkD.sorted.bam
361
+ /ref/mblab/data/chipexo/raw_bam/Htl1_REP1.mLb.mkD.sorted.bam
362
+ /ref/mblab/data/chipexo/raw_bam/Htl1_REP2.mLb.mkD.sorted.bam
363
+ /ref/mblab/data/chipexo/raw_bam/Htz1_REP1.mLb.mkD.sorted.bam
364
+ /ref/mblab/data/chipexo/raw_bam/Htz1_REP2.mLb.mkD.sorted.bam
365
+ /ref/mblab/data/chipexo/raw_bam/Hxk2_REP1.mLb.mkD.sorted.bam
366
+ /ref/mblab/data/chipexo/raw_bam/Idi1_REP1.mLb.mkD.sorted.bam
367
+ /ref/mblab/data/chipexo/raw_bam/Ids2_REP1.mLb.mkD.sorted.bam
368
+ /ref/mblab/data/chipexo/raw_bam/Ies1_REP1.mLb.mkD.sorted.bam
369
+ /ref/mblab/data/chipexo/raw_bam/Ies2_REP1.mLb.mkD.sorted.bam
370
+ /ref/mblab/data/chipexo/raw_bam/Ies3_REP1.mLb.mkD.sorted.bam
371
+ /ref/mblab/data/chipexo/raw_bam/Ies3_REP2.mLb.mkD.sorted.bam
372
+ /ref/mblab/data/chipexo/raw_bam/Ies4_REP1.mLb.mkD.sorted.bam
373
+ /ref/mblab/data/chipexo/raw_bam/Ies5_REP1.mLb.mkD.sorted.bam
374
+ /ref/mblab/data/chipexo/raw_bam/Ies6_REP1.mLb.mkD.sorted.bam
375
+ /ref/mblab/data/chipexo/raw_bam/Ies6_REP2.mLb.mkD.sorted.bam
376
+ /ref/mblab/data/chipexo/raw_bam/Ifh1_REP1.mLb.mkD.sorted.bam
377
+ /ref/mblab/data/chipexo/raw_bam/Ifh1_REP2.mLb.mkD.sorted.bam
378
+ /ref/mblab/data/chipexo/raw_bam/Iki1_REP1.mLb.mkD.sorted.bam
379
+ /ref/mblab/data/chipexo/raw_bam/Iki3_REP1.mLb.mkD.sorted.bam
380
+ /ref/mblab/data/chipexo/raw_bam/Ilv5_REP1.mLb.mkD.sorted.bam
381
+ /ref/mblab/data/chipexo/raw_bam/Imd2_REP1.mLb.mkD.sorted.bam
382
+ /ref/mblab/data/chipexo/raw_bam/Iml2_REP1.mLb.mkD.sorted.bam
383
+ /ref/mblab/data/chipexo/raw_bam/Ino2_REP1.mLb.mkD.sorted.bam
384
+ /ref/mblab/data/chipexo/raw_bam/Ino2_REP2.mLb.mkD.sorted.bam
385
+ /ref/mblab/data/chipexo/raw_bam/Ino4_REP1.mLb.mkD.sorted.bam
386
+ /ref/mblab/data/chipexo/raw_bam/Ino4_REP2.mLb.mkD.sorted.bam
387
+ /ref/mblab/data/chipexo/raw_bam/Ino80_REP1.mLb.mkD.sorted.bam
388
+ /ref/mblab/data/chipexo/raw_bam/Ioc2_REP1.mLb.mkD.sorted.bam
389
+ /ref/mblab/data/chipexo/raw_bam/Ioc3_REP1.mLb.mkD.sorted.bam
390
+ /ref/mblab/data/chipexo/raw_bam/Ioc4_REP1.mLb.mkD.sorted.bam
391
+ /ref/mblab/data/chipexo/raw_bam/Irc20_REP1.mLb.mkD.sorted.bam
392
+ /ref/mblab/data/chipexo/raw_bam/Irr1_REP1.mLb.mkD.sorted.bam
393
+ /ref/mblab/data/chipexo/raw_bam/Irr1_REP2.mLb.mkD.sorted.bam
394
+ /ref/mblab/data/chipexo/raw_bam/Isw1_REP1.mLb.mkD.sorted.bam
395
+ /ref/mblab/data/chipexo/raw_bam/Isw2_REP1.mLb.mkD.sorted.bam
396
+ /ref/mblab/data/chipexo/raw_bam/Itc1_REP1.mLb.mkD.sorted.bam
397
+ /ref/mblab/data/chipexo/raw_bam/Iwr1_REP1.mLb.mkD.sorted.bam
398
+ /ref/mblab/data/chipexo/raw_bam/Iws1_REP1.mLb.mkD.sorted.bam
399
+ /ref/mblab/data/chipexo/raw_bam/Iws1_REP2.mLb.mkD.sorted.bam
400
+ /ref/mblab/data/chipexo/raw_bam/Ixr1_REP1.mLb.mkD.sorted.bam
401
+ /ref/mblab/data/chipexo/raw_bam/Jhd1_REP1.mLb.mkD.sorted.bam
402
+ /ref/mblab/data/chipexo/raw_bam/Jhd2_REP1.mLb.mkD.sorted.bam
403
+ /ref/mblab/data/chipexo/raw_bam/Kae1_REP1.mLb.mkD.sorted.bam
404
+ /ref/mblab/data/chipexo/raw_bam/Kap95_REP1.mLb.mkD.sorted.bam
405
+ /ref/mblab/data/chipexo/raw_bam/Kar2_REP1.mLb.mkD.sorted.bam
406
+ /ref/mblab/data/chipexo/raw_bam/Kar4_REP1.mLb.mkD.sorted.bam
407
+ /ref/mblab/data/chipexo/raw_bam/Kar4_REP2.mLb.mkD.sorted.bam
408
+ /ref/mblab/data/chipexo/raw_bam/Kin28_REP1.mLb.mkD.sorted.bam
409
+ /ref/mblab/data/chipexo/raw_bam/Kin28_REP2.mLb.mkD.sorted.bam
410
+ /ref/mblab/data/chipexo/raw_bam/Kss1_REP1.mLb.mkD.sorted.bam
411
+ /ref/mblab/data/chipexo/raw_bam/Kti12_REP1.mLb.mkD.sorted.bam
412
+ /ref/mblab/data/chipexo/raw_bam/Lea1_REP1.mLb.mkD.sorted.bam
413
+ /ref/mblab/data/chipexo/raw_bam/Lea1_REP2.mLb.mkD.sorted.bam
414
+ /ref/mblab/data/chipexo/raw_bam/Leo1_REP1.mLb.mkD.sorted.bam
415
+ /ref/mblab/data/chipexo/raw_bam/Leo1_REP2.mLb.mkD.sorted.bam
416
+ /ref/mblab/data/chipexo/raw_bam/Leu3_REP1.mLb.mkD.sorted.bam
417
+ /ref/mblab/data/chipexo/raw_bam/Leu3_REP2.mLb.mkD.sorted.bam
418
+ /ref/mblab/data/chipexo/raw_bam/Lge1_REP1.mLb.mkD.sorted.bam
419
+ /ref/mblab/data/chipexo/raw_bam/Lot5_REP1.mLb.mkD.sorted.bam
420
+ /ref/mblab/data/chipexo/raw_bam/Lrg1_REP1.mLb.mkD.sorted.bam
421
+ /ref/mblab/data/chipexo/raw_bam/Lys14_REP1.mLb.mkD.sorted.bam
422
+ /ref/mblab/data/chipexo/raw_bam/Lys14_REP2.mLb.mkD.sorted.bam
423
+ /ref/mblab/data/chipexo/raw_bam/Lys20_REP1.mLb.mkD.sorted.bam
424
+ /ref/mblab/data/chipexo/raw_bam/Lys20_REP2.mLb.mkD.sorted.bam
425
+ /ref/mblab/data/chipexo/raw_bam/Lys21_REP1.mLb.mkD.sorted.bam
426
+ /ref/mblab/data/chipexo/raw_bam/Lys21_REP2.mLb.mkD.sorted.bam
427
+ /ref/mblab/data/chipexo/raw_bam/Mac1_REP1.mLb.mkD.sorted.bam
428
+ /ref/mblab/data/chipexo/raw_bam/Mac1_REP2.mLb.mkD.sorted.bam
429
+ /ref/mblab/data/chipexo/raw_bam/Maf1_REP1.mLb.mkD.sorted.bam
430
+ /ref/mblab/data/chipexo/raw_bam/Maf1_REP2.mLb.mkD.sorted.bam
431
+ /ref/mblab/data/chipexo/raw_bam/Mal33_REP1.mLb.mkD.sorted.bam
432
+ /ref/mblab/data/chipexo/raw_bam/Mas6_REP1.mLb.mkD.sorted.bam
433
+ /ref/mblab/data/chipexo/raw_bam/Matalpha2_REP1.mLb.mkD.sorted.bam
434
+ /ref/mblab/data/chipexo/raw_bam/Matalpha2_REP2.mLb.mkD.sorted.bam
435
+ /ref/mblab/data/chipexo/raw_bam/Mbf1_REP1.mLb.mkD.sorted.bam
436
+ /ref/mblab/data/chipexo/raw_bam/Mbp1_REP1.mLb.mkD.sorted.bam
437
+ /ref/mblab/data/chipexo/raw_bam/Mbp1_REP2.mLb.mkD.sorted.bam
438
+ /ref/mblab/data/chipexo/raw_bam/Mca1_REP1.mLb.mkD.sorted.bam
439
+ /ref/mblab/data/chipexo/raw_bam/Mcd1_REP1.mLb.mkD.sorted.bam
440
+ /ref/mblab/data/chipexo/raw_bam/Mck1_REP1.mLb.mkD.sorted.bam
441
+ /ref/mblab/data/chipexo/raw_bam/Mcm16_REP1.mLb.mkD.sorted.bam
442
+ /ref/mblab/data/chipexo/raw_bam/Mcm16_REP2.mLb.mkD.sorted.bam
443
+ /ref/mblab/data/chipexo/raw_bam/Mcm1_REP1.mLb.mkD.sorted.bam
444
+ /ref/mblab/data/chipexo/raw_bam/Mcm1_REP2.mLb.mkD.sorted.bam
445
+ /ref/mblab/data/chipexo/raw_bam/Med11_REP1.mLb.mkD.sorted.bam
446
+ /ref/mblab/data/chipexo/raw_bam/Med11_REP2.mLb.mkD.sorted.bam
447
+ /ref/mblab/data/chipexo/raw_bam/Med1_REP1.mLb.mkD.sorted.bam
448
+ /ref/mblab/data/chipexo/raw_bam/Med20_REP1.mLb.mkD.sorted.bam
449
+ /ref/mblab/data/chipexo/raw_bam/Med2_REP1.mLb.mkD.sorted.bam
450
+ /ref/mblab/data/chipexo/raw_bam/Med2_REP2.mLb.mkD.sorted.bam
451
+ /ref/mblab/data/chipexo/raw_bam/Med4_REP1.mLb.mkD.sorted.bam
452
+ /ref/mblab/data/chipexo/raw_bam/Med4_REP2.mLb.mkD.sorted.bam
453
+ /ref/mblab/data/chipexo/raw_bam/Med6_REP1.mLb.mkD.sorted.bam
454
+ /ref/mblab/data/chipexo/raw_bam/Med6_REP2.mLb.mkD.sorted.bam
455
+ /ref/mblab/data/chipexo/raw_bam/Med8_REP1.mLb.mkD.sorted.bam
456
+ /ref/mblab/data/chipexo/raw_bam/Met18_REP1.mLb.mkD.sorted.bam
457
+ /ref/mblab/data/chipexo/raw_bam/Met28_REP1.mLb.mkD.sorted.bam
458
+ /ref/mblab/data/chipexo/raw_bam/Met28_REP2.mLb.mkD.sorted.bam
459
+ /ref/mblab/data/chipexo/raw_bam/Met28_REP3.mLb.mkD.sorted.bam
460
+ /ref/mblab/data/chipexo/raw_bam/Met30_REP1.mLb.mkD.sorted.bam
461
+ /ref/mblab/data/chipexo/raw_bam/Met31_REP1.mLb.mkD.sorted.bam
462
+ /ref/mblab/data/chipexo/raw_bam/Met31_REP2.mLb.mkD.sorted.bam
463
+ /ref/mblab/data/chipexo/raw_bam/Met32_REP1.mLb.mkD.sorted.bam
464
+ /ref/mblab/data/chipexo/raw_bam/Met32_REP2.mLb.mkD.sorted.bam
465
+ /ref/mblab/data/chipexo/raw_bam/Met4_REP1.mLb.mkD.sorted.bam
466
+ /ref/mblab/data/chipexo/raw_bam/Met4_REP2.mLb.mkD.sorted.bam
467
+ /ref/mblab/data/chipexo/raw_bam/Mft1_REP1.mLb.mkD.sorted.bam
468
+ /ref/mblab/data/chipexo/raw_bam/Mft1_REP2.mLb.mkD.sorted.bam
469
+ /ref/mblab/data/chipexo/raw_bam/Mga2_REP1.mLb.mkD.sorted.bam
470
+ /ref/mblab/data/chipexo/raw_bam/Mif2_REP1.mLb.mkD.sorted.bam
471
+ /ref/mblab/data/chipexo/raw_bam/Mif2_REP2.mLb.mkD.sorted.bam
472
+ /ref/mblab/data/chipexo/raw_bam/Mig1_REP1.mLb.mkD.sorted.bam
473
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474
+ /ref/mblab/data/chipexo/raw_bam/Mig2_REP1.mLb.mkD.sorted.bam
475
+ /ref/mblab/data/chipexo/raw_bam/Mig2_REP2.mLb.mkD.sorted.bam
476
+ /ref/mblab/data/chipexo/raw_bam/Mig3_REP1.mLb.mkD.sorted.bam
477
+ /ref/mblab/data/chipexo/raw_bam/Mks1_REP1.mLb.mkD.sorted.bam
478
+ /ref/mblab/data/chipexo/raw_bam/Mlp1_REP1.mLb.mkD.sorted.bam
479
+ /ref/mblab/data/chipexo/raw_bam/Mlp1_REP2.mLb.mkD.sorted.bam
480
+ /ref/mblab/data/chipexo/raw_bam/Mor1_REP1.mLb.mkD.sorted.bam
481
+ /ref/mblab/data/chipexo/raw_bam/Mot1_REP1.mLb.mkD.sorted.bam
482
+ /ref/mblab/data/chipexo/raw_bam/Mot2_REP1.mLb.mkD.sorted.bam
483
+ /ref/mblab/data/chipexo/raw_bam/Mot3_REP1.mLb.mkD.sorted.bam
484
+ /ref/mblab/data/chipexo/raw_bam/Mot3_REP2.mLb.mkD.sorted.bam
485
+ /ref/mblab/data/chipexo/raw_bam/Mre11_REP1.mLb.mkD.sorted.bam
486
+ /ref/mblab/data/chipexo/raw_bam/Msc6_REP1.mLb.mkD.sorted.bam
487
+ /ref/mblab/data/chipexo/raw_bam/Msi1_REP1.mLb.mkD.sorted.bam
488
+ /ref/mblab/data/chipexo/raw_bam/Msn1_REP1.mLb.mkD.sorted.bam
489
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490
+ /ref/mblab/data/chipexo/raw_bam/Msn4_REP1.mLb.mkD.sorted.bam
491
+ /ref/mblab/data/chipexo/raw_bam/Mss11_REP1.mLb.mkD.sorted.bam
492
+ /ref/mblab/data/chipexo/raw_bam/Mss11_REP2.mLb.mkD.sorted.bam
493
+ /ref/mblab/data/chipexo/raw_bam/Mth1_REP1.mLb.mkD.sorted.bam
494
+ /ref/mblab/data/chipexo/raw_bam/Mud1_REP1.mLb.mkD.sorted.bam
495
+ /ref/mblab/data/chipexo/raw_bam/Mud1_REP2.mLb.mkD.sorted.bam
496
+ /ref/mblab/data/chipexo/raw_bam/Mus81_REP1.mLb.mkD.sorted.bam
497
+ /ref/mblab/data/chipexo/raw_bam/Mxr1_REP1.mLb.mkD.sorted.bam
498
+ /ref/mblab/data/chipexo/raw_bam/Nab2_REP1.mLb.mkD.sorted.bam
499
+ /ref/mblab/data/chipexo/raw_bam/Nab2_REP2.mLb.mkD.sorted.bam
500
+ /ref/mblab/data/chipexo/raw_bam/Naf1_REP1.mLb.mkD.sorted.bam
501
+ /ref/mblab/data/chipexo/raw_bam/Naf1_REP2.mLb.mkD.sorted.bam
502
+ /ref/mblab/data/chipexo/raw_bam/Nan1_REP1.mLb.mkD.sorted.bam
503
+ /ref/mblab/data/chipexo/raw_bam/Nap1_REP1.mLb.mkD.sorted.bam
504
+ /ref/mblab/data/chipexo/raw_bam/Ncb2_REP1.mLb.mkD.sorted.bam
505
+ /ref/mblab/data/chipexo/raw_bam/Ncb2_REP2.mLb.mkD.sorted.bam
506
+ /ref/mblab/data/chipexo/raw_bam/Ncl1_REP1.mLb.mkD.sorted.bam
507
+ /ref/mblab/data/chipexo/raw_bam/Ndd1_REP1.mLb.mkD.sorted.bam
508
+ /ref/mblab/data/chipexo/raw_bam/Ndd1_REP2.mLb.mkD.sorted.bam
509
+ /ref/mblab/data/chipexo/raw_bam/Net1_REP1.mLb.mkD.sorted.bam
510
+ /ref/mblab/data/chipexo/raw_bam/Nfi1_REP1.mLb.mkD.sorted.bam
511
+ /ref/mblab/data/chipexo/raw_bam/Ngg1_REP1.mLb.mkD.sorted.bam
512
+ /ref/mblab/data/chipexo/raw_bam/Ngg1_REP2.mLb.mkD.sorted.bam
513
+ /ref/mblab/data/chipexo/raw_bam/Nhp10_REP1.mLb.mkD.sorted.bam
514
+ /ref/mblab/data/chipexo/raw_bam/Nhp10_REP2.mLb.mkD.sorted.bam
515
+ /ref/mblab/data/chipexo/raw_bam/Nhp6a_REP1.mLb.mkD.sorted.bam
516
+ /ref/mblab/data/chipexo/raw_bam/Nhp6a_REP2.mLb.mkD.sorted.bam
517
+ /ref/mblab/data/chipexo/raw_bam/Nic96_REP1.mLb.mkD.sorted.bam
518
+ /ref/mblab/data/chipexo/raw_bam/Nkp1_REP1.mLb.mkD.sorted.bam
519
+ /ref/mblab/data/chipexo/raw_bam/Nkp1_REP2.mLb.mkD.sorted.bam
520
+ /ref/mblab/data/chipexo/raw_bam/Nkp2_REP1.mLb.mkD.sorted.bam
521
+ /ref/mblab/data/chipexo/raw_bam/Nkp2_REP2.mLb.mkD.sorted.bam
522
+ /ref/mblab/data/chipexo/raw_bam/Nma1_REP1.mLb.mkD.sorted.bam
523
+ /ref/mblab/data/chipexo/raw_bam/Nma2_REP1.mLb.mkD.sorted.bam
524
+ /ref/mblab/data/chipexo/raw_bam/Nmd5_REP1.mLb.mkD.sorted.bam
525
+ /ref/mblab/data/chipexo/raw_bam/Nnf2_REP1.mLb.mkD.sorted.bam
526
+ /ref/mblab/data/chipexo/raw_bam/Nog2_REP1.mLb.mkD.sorted.bam
527
+ /ref/mblab/data/chipexo/raw_bam/Nop58_REP1.mLb.mkD.sorted.bam
528
+ /ref/mblab/data/chipexo/raw_bam/Not3_REP1.mLb.mkD.sorted.bam
529
+ /ref/mblab/data/chipexo/raw_bam/Not5_REP1.mLb.mkD.sorted.bam
530
+ /ref/mblab/data/chipexo/raw_bam/Npl3_REP1.mLb.mkD.sorted.bam
531
+ /ref/mblab/data/chipexo/raw_bam/Npl3_REP2.mLb.mkD.sorted.bam
532
+ /ref/mblab/data/chipexo/raw_bam/Npl6_REP1.mLb.mkD.sorted.bam
533
+ /ref/mblab/data/chipexo/raw_bam/Nrd1_REP1.mLb.mkD.sorted.bam
534
+ /ref/mblab/data/chipexo/raw_bam/Nrd1_REP2.mLb.mkD.sorted.bam
535
+ /ref/mblab/data/chipexo/raw_bam/Nrg1_REP1.mLb.mkD.sorted.bam
536
+ /ref/mblab/data/chipexo/raw_bam/Nrg1_REP2.mLb.mkD.sorted.bam
537
+ /ref/mblab/data/chipexo/raw_bam/Nrg2_REP1.mLb.mkD.sorted.bam
538
+ /ref/mblab/data/chipexo/raw_bam/Nrg2_REP2.mLb.mkD.sorted.bam
539
+ /ref/mblab/data/chipexo/raw_bam/Nrm1_REP1.mLb.mkD.sorted.bam
540
+ /ref/mblab/data/chipexo/raw_bam/Nrm1_REP2.mLb.mkD.sorted.bam
541
+ /ref/mblab/data/chipexo/raw_bam/Nsa2_REP1.mLb.mkD.sorted.bam
542
+ /ref/mblab/data/chipexo/raw_bam/Nsp1_REP1.mLb.mkD.sorted.bam
543
+ /ref/mblab/data/chipexo/raw_bam/Nsr1_REP1.mLb.mkD.sorted.bam
544
+ /ref/mblab/data/chipexo/raw_bam/Nto1_REP1.mLb.mkD.sorted.bam
545
+ /ref/mblab/data/chipexo/raw_bam/Nup42_REP1.mLb.mkD.sorted.bam
546
+ /ref/mblab/data/chipexo/raw_bam/Nut1_REP1.mLb.mkD.sorted.bam
547
+ /ref/mblab/data/chipexo/raw_bam/Nut1_REP2.mLb.mkD.sorted.bam
548
+ /ref/mblab/data/chipexo/raw_bam/Nut2_REP1.mLb.mkD.sorted.bam
549
+ /ref/mblab/data/chipexo/raw_bam/Nut2_REP2.mLb.mkD.sorted.bam
550
+ /ref/mblab/data/chipexo/raw_bam/Oaf1_REP1.mLb.mkD.sorted.bam
551
+ /ref/mblab/data/chipexo/raw_bam/Oaf3_REP1.mLb.mkD.sorted.bam
552
+ /ref/mblab/data/chipexo/raw_bam/Oaf3_REP2.mLb.mkD.sorted.bam
553
+ /ref/mblab/data/chipexo/raw_bam/Orc1_REP1.mLb.mkD.sorted.bam
554
+ /ref/mblab/data/chipexo/raw_bam/Orc1_REP2.mLb.mkD.sorted.bam
555
+ /ref/mblab/data/chipexo/raw_bam/Orc2_REP1.mLb.mkD.sorted.bam
556
+ /ref/mblab/data/chipexo/raw_bam/Orc2_REP2.mLb.mkD.sorted.bam
557
+ /ref/mblab/data/chipexo/raw_bam/Orc4_REP1.mLb.mkD.sorted.bam
558
+ /ref/mblab/data/chipexo/raw_bam/Orc4_REP2.mLb.mkD.sorted.bam
559
+ /ref/mblab/data/chipexo/raw_bam/Orc5_REP1.mLb.mkD.sorted.bam
560
+ /ref/mblab/data/chipexo/raw_bam/Orc5_REP2.mLb.mkD.sorted.bam
561
+ /ref/mblab/data/chipexo/raw_bam/Orc6_REP1.mLb.mkD.sorted.bam
562
+ /ref/mblab/data/chipexo/raw_bam/Orc6_REP2.mLb.mkD.sorted.bam
563
+ /ref/mblab/data/chipexo/raw_bam/Otu1_REP1.mLb.mkD.sorted.bam
564
+ /ref/mblab/data/chipexo/raw_bam/Pab1_REP1.mLb.mkD.sorted.bam
565
+ /ref/mblab/data/chipexo/raw_bam/Paf1_REP1.mLb.mkD.sorted.bam
566
+ /ref/mblab/data/chipexo/raw_bam/Paf1_REP2.mLb.mkD.sorted.bam
567
+ /ref/mblab/data/chipexo/raw_bam/Pap1_REP1.mLb.mkD.sorted.bam
568
+ /ref/mblab/data/chipexo/raw_bam/Pap1_REP2.mLb.mkD.sorted.bam
569
+ /ref/mblab/data/chipexo/raw_bam/Pat1_REP1.mLb.mkD.sorted.bam
570
+ /ref/mblab/data/chipexo/raw_bam/Pcf11_REP1.mLb.mkD.sorted.bam
571
+ /ref/mblab/data/chipexo/raw_bam/Pcf11_REP2.mLb.mkD.sorted.bam
572
+ /ref/mblab/data/chipexo/raw_bam/Pcl9_REP1.mLb.mkD.sorted.bam
573
+ /ref/mblab/data/chipexo/raw_bam/Pct1_REP1.mLb.mkD.sorted.bam
574
+ /ref/mblab/data/chipexo/raw_bam/Pdc1_REP1.mLb.mkD.sorted.bam
575
+ /ref/mblab/data/chipexo/raw_bam/Pdr1_REP1.mLb.mkD.sorted.bam
576
+ /ref/mblab/data/chipexo/raw_bam/Pdr1_REP2.mLb.mkD.sorted.bam
577
+ /ref/mblab/data/chipexo/raw_bam/Pdr3_REP1.mLb.mkD.sorted.bam
578
+ /ref/mblab/data/chipexo/raw_bam/Pdr3_REP2.mLb.mkD.sorted.bam
579
+ /ref/mblab/data/chipexo/raw_bam/Pgd1_REP1.mLb.mkD.sorted.bam
580
+ /ref/mblab/data/chipexo/raw_bam/Pgd1_REP2.mLb.mkD.sorted.bam
581
+ /ref/mblab/data/chipexo/raw_bam/Phd1_REP1.mLb.mkD.sorted.bam
582
+ /ref/mblab/data/chipexo/raw_bam/Phd1_REP2.mLb.mkD.sorted.bam
583
+ /ref/mblab/data/chipexo/raw_bam/Pho23_REP1.mLb.mkD.sorted.bam
584
+ /ref/mblab/data/chipexo/raw_bam/Pho23_REP2.mLb.mkD.sorted.bam
585
+ /ref/mblab/data/chipexo/raw_bam/Pho2_REP1.mLb.mkD.sorted.bam
586
+ /ref/mblab/data/chipexo/raw_bam/Pho4_REP1.mLb.mkD.sorted.bam
587
+ /ref/mblab/data/chipexo/raw_bam/Pho80_REP1.mLb.mkD.sorted.bam
588
+ /ref/mblab/data/chipexo/raw_bam/Pho85_REP1.mLb.mkD.sorted.bam
589
+ /ref/mblab/data/chipexo/raw_bam/Pip2_REP1.mLb.mkD.sorted.bam
590
+ /ref/mblab/data/chipexo/raw_bam/Pip2_REP2.mLb.mkD.sorted.bam
591
+ /ref/mblab/data/chipexo/raw_bam/Plo1_REP1.mLb.mkD.sorted.bam
592
+ /ref/mblab/data/chipexo/raw_bam/Plo2_REP1.mLb.mkD.sorted.bam
593
+ /ref/mblab/data/chipexo/raw_bam/Plp1_REP1.mLb.mkD.sorted.bam
594
+ /ref/mblab/data/chipexo/raw_bam/Plp2_REP1.mLb.mkD.sorted.bam
595
+ /ref/mblab/data/chipexo/raw_bam/Pnc1_REP1.mLb.mkD.sorted.bam
596
+ /ref/mblab/data/chipexo/raw_bam/Png1_REP1.mLb.mkD.sorted.bam
597
+ /ref/mblab/data/chipexo/raw_bam/Pob3_REP1.mLb.mkD.sorted.bam
598
+ /ref/mblab/data/chipexo/raw_bam/Pob3_REP2.mLb.mkD.sorted.bam
599
+ /ref/mblab/data/chipexo/raw_bam/Pog1_REP1.mLb.mkD.sorted.bam
600
+ /ref/mblab/data/chipexo/raw_bam/Pol1_REP1.mLb.mkD.sorted.bam
601
+ /ref/mblab/data/chipexo/raw_bam/Pol2_REP1.mLb.mkD.sorted.bam
602
+ /ref/mblab/data/chipexo/raw_bam/Pop2_REP1.mLb.mkD.sorted.bam
603
+ /ref/mblab/data/chipexo/raw_bam/Pre2_REP1.mLb.mkD.sorted.bam
604
+ /ref/mblab/data/chipexo/raw_bam/Pre4_REP1.mLb.mkD.sorted.bam
605
+ /ref/mblab/data/chipexo/raw_bam/Pre8_REP1.mLb.mkD.sorted.bam
606
+ /ref/mblab/data/chipexo/raw_bam/Prp45_REP1.mLb.mkD.sorted.bam
607
+ /ref/mblab/data/chipexo/raw_bam/Prp45_REP2.mLb.mkD.sorted.bam
608
+ /ref/mblab/data/chipexo/raw_bam/Prp46_REP1.mLb.mkD.sorted.bam
609
+ /ref/mblab/data/chipexo/raw_bam/Prp46_REP2.mLb.mkD.sorted.bam
610
+ /ref/mblab/data/chipexo/raw_bam/Prp4_REP1.mLb.mkD.sorted.bam
611
+ /ref/mblab/data/chipexo/raw_bam/Prp4_REP2.mLb.mkD.sorted.bam
612
+ /ref/mblab/data/chipexo/raw_bam/Prr2_REP1.mLb.mkD.sorted.bam
613
+ /ref/mblab/data/chipexo/raw_bam/Psh1_REP1.mLb.mkD.sorted.bam
614
+ /ref/mblab/data/chipexo/raw_bam/Psy2_REP1.mLb.mkD.sorted.bam
615
+ /ref/mblab/data/chipexo/raw_bam/Pta1_REP2.mLb.mkD.sorted.bam
616
+ /ref/mblab/data/chipexo/raw_bam/Ptc3_REP1.mLb.mkD.sorted.bam
617
+ /ref/mblab/data/chipexo/raw_bam/Pub1_REP1.mLb.mkD.sorted.bam
618
+ /ref/mblab/data/chipexo/raw_bam/Pub1_REP2.mLb.mkD.sorted.bam
619
+ /ref/mblab/data/chipexo/raw_bam/Pup1_REP1.mLb.mkD.sorted.bam
620
+ /ref/mblab/data/chipexo/raw_bam/Pus4_REP1.mLb.mkD.sorted.bam
621
+ /ref/mblab/data/chipexo/raw_bam/Put3_REP1.mLb.mkD.sorted.bam
622
+ /ref/mblab/data/chipexo/raw_bam/Put3_REP2.mLb.mkD.sorted.bam
623
+ /ref/mblab/data/chipexo/raw_bam/Pwp1_REP1.mLb.mkD.sorted.bam
624
+ /ref/mblab/data/chipexo/raw_bam/Pzf1_REP1.mLb.mkD.sorted.bam
625
+ /ref/mblab/data/chipexo/raw_bam/Qri1_REP1.mLb.mkD.sorted.bam
626
+ /ref/mblab/data/chipexo/raw_bam/Qri8_REP1.mLb.mkD.sorted.bam
627
+ /ref/mblab/data/chipexo/raw_bam/Rad2_REP1.mLb.mkD.sorted.bam
628
+ /ref/mblab/data/chipexo/raw_bam/Rad30_REP1.mLb.mkD.sorted.bam
629
+ /ref/mblab/data/chipexo/raw_bam/Rad3_REP1.mLb.mkD.sorted.bam
630
+ /ref/mblab/data/chipexo/raw_bam/Rad3_REP2.mLb.mkD.sorted.bam
631
+ /ref/mblab/data/chipexo/raw_bam/Rad50_REP1.mLb.mkD.sorted.bam
632
+ /ref/mblab/data/chipexo/raw_bam/Rad51_REP1.mLb.mkD.sorted.bam
633
+ /ref/mblab/data/chipexo/raw_bam/Rad52_REP1.mLb.mkD.sorted.bam
634
+ /ref/mblab/data/chipexo/raw_bam/Rad54_REP1.mLb.mkD.sorted.bam
635
+ /ref/mblab/data/chipexo/raw_bam/Rad55_REP1.mLb.mkD.sorted.bam
636
+ /ref/mblab/data/chipexo/raw_bam/Rad57_REP1.mLb.mkD.sorted.bam
637
+ /ref/mblab/data/chipexo/raw_bam/Rad6_REP1.mLb.mkD.sorted.bam
638
+ /ref/mblab/data/chipexo/raw_bam/Rad6_REP2.mLb.mkD.sorted.bam
639
+ /ref/mblab/data/chipexo/raw_bam/Rad9_REP1.mLb.mkD.sorted.bam
640
+ /ref/mblab/data/chipexo/raw_bam/Rad9_REP2.mLb.mkD.sorted.bam
641
+ /ref/mblab/data/chipexo/raw_bam/Rai1_REP1.mLb.mkD.sorted.bam
642
+ /ref/mblab/data/chipexo/raw_bam/Rap1_REP1.mLb.mkD.sorted.bam
643
+ /ref/mblab/data/chipexo/raw_bam/Rap1_REP2.mLb.mkD.sorted.bam
644
+ /ref/mblab/data/chipexo/raw_bam/Rap1_REP3.mLb.mkD.sorted.bam
645
+ /ref/mblab/data/chipexo/raw_bam/Rat1_REP1.mLb.mkD.sorted.bam
646
+ /ref/mblab/data/chipexo/raw_bam/Rco1_REP1.mLb.mkD.sorted.bam
647
+ /ref/mblab/data/chipexo/raw_bam/Rcs1_REP1.mLb.mkD.sorted.bam
648
+ /ref/mblab/data/chipexo/raw_bam/Rcs1_REP2.mLb.mkD.sorted.bam
649
+ /ref/mblab/data/chipexo/raw_bam/Rdr1_REP1.mLb.mkD.sorted.bam
650
+ /ref/mblab/data/chipexo/raw_bam/Rds2_REP1.mLb.mkD.sorted.bam
651
+ /ref/mblab/data/chipexo/raw_bam/Rds2_REP2.mLb.mkD.sorted.bam
652
+ /ref/mblab/data/chipexo/raw_bam/Reb1_REP1.mLb.mkD.sorted.bam
653
+ /ref/mblab/data/chipexo/raw_bam/Reb1_REP2.mLb.mkD.sorted.bam
654
+ /ref/mblab/data/chipexo/raw_bam/Ref2_REP1.mLb.mkD.sorted.bam
655
+ /ref/mblab/data/chipexo/raw_bam/Ref2_REP2.mLb.mkD.sorted.bam
656
+ /ref/mblab/data/chipexo/raw_bam/Reg1_REP1.mLb.mkD.sorted.bam
657
+ /ref/mblab/data/chipexo/raw_bam/Reg2_REP1.mLb.mkD.sorted.bam
658
+ /ref/mblab/data/chipexo/raw_bam/Ret1_REP1.mLb.mkD.sorted.bam
659
+ /ref/mblab/data/chipexo/raw_bam/Ret1_REP2.mLb.mkD.sorted.bam
660
+ /ref/mblab/data/chipexo/raw_bam/Rfa1_REP1.mLb.mkD.sorted.bam
661
+ /ref/mblab/data/chipexo/raw_bam/Rfc1_REP1.mLb.mkD.sorted.bam
662
+ /ref/mblab/data/chipexo/raw_bam/Rfc5_REP1.mLb.mkD.sorted.bam
663
+ /ref/mblab/data/chipexo/raw_bam/Rfm1_REP1.mLb.mkD.sorted.bam
664
+ /ref/mblab/data/chipexo/raw_bam/Rfx1_REP1.mLb.mkD.sorted.bam
665
+ /ref/mblab/data/chipexo/raw_bam/Rfx1_REP2.mLb.mkD.sorted.bam
666
+ /ref/mblab/data/chipexo/raw_bam/Rgm1_REP1.mLb.mkD.sorted.bam
667
+ /ref/mblab/data/chipexo/raw_bam/Rgm1_REP2.mLb.mkD.sorted.bam
668
+ /ref/mblab/data/chipexo/raw_bam/Rgr1_REP1.mLb.mkD.sorted.bam
669
+ /ref/mblab/data/chipexo/raw_bam/Rgr1_REP2.mLb.mkD.sorted.bam
670
+ /ref/mblab/data/chipexo/raw_bam/Rgt1_REP1.mLb.mkD.sorted.bam
671
+ /ref/mblab/data/chipexo/raw_bam/Rgt1_REP2.mLb.mkD.sorted.bam
672
+ /ref/mblab/data/chipexo/raw_bam/Rhr2_REP1.mLb.mkD.sorted.bam
673
+ /ref/mblab/data/chipexo/raw_bam/Rib1_REP1.mLb.mkD.sorted.bam
674
+ /ref/mblab/data/chipexo/raw_bam/Rib4_REP1.mLb.mkD.sorted.bam
675
+ /ref/mblab/data/chipexo/raw_bam/Rif1_REP1.mLb.mkD.sorted.bam
676
+ /ref/mblab/data/chipexo/raw_bam/Rif1_REP2.mLb.mkD.sorted.bam
677
+ /ref/mblab/data/chipexo/raw_bam/Rif2_REP1.mLb.mkD.sorted.bam
678
+ /ref/mblab/data/chipexo/raw_bam/Rif2_REP2.mLb.mkD.sorted.bam
679
+ /ref/mblab/data/chipexo/raw_bam/Rim101_REP1.mLb.mkD.sorted.bam
680
+ /ref/mblab/data/chipexo/raw_bam/RIM20_REP1.mLb.mkD.sorted.bam
681
+ /ref/mblab/data/chipexo/raw_bam/Rio2_REP1.mLb.mkD.sorted.bam
682
+ /ref/mblab/data/chipexo/raw_bam/Rlf2_REP1.mLb.mkD.sorted.bam
683
+ /ref/mblab/data/chipexo/raw_bam/Rlm1_REP1.mLb.mkD.sorted.bam
684
+ /ref/mblab/data/chipexo/raw_bam/Rlm1_REP2.mLb.mkD.sorted.bam
685
+ /ref/mblab/data/chipexo/raw_bam/Rlr1_REP1.mLb.mkD.sorted.bam
686
+ /ref/mblab/data/chipexo/raw_bam/Rlr1_REP2.mLb.mkD.sorted.bam
687
+ /ref/mblab/data/chipexo/raw_bam/Rms1_REP1.mLb.mkD.sorted.bam
688
+ /ref/mblab/data/chipexo/raw_bam/Rmt2_REP1.mLb.mkD.sorted.bam
689
+ /ref/mblab/data/chipexo/raw_bam/Rna14_REP1.mLb.mkD.sorted.bam
690
+ /ref/mblab/data/chipexo/raw_bam/Rna14_REP2.mLb.mkD.sorted.bam
691
+ /ref/mblab/data/chipexo/raw_bam/Rox1_REP1.mLb.mkD.sorted.bam
692
+ /ref/mblab/data/chipexo/raw_bam/Rox1_REP2.mLb.mkD.sorted.bam
693
+ /ref/mblab/data/chipexo/raw_bam/Rox3_REP1.mLb.mkD.sorted.bam
694
+ /ref/mblab/data/chipexo/raw_bam/Rox3_REP2.mLb.mkD.sorted.bam
695
+ /ref/mblab/data/chipexo/raw_bam/Rpa12_REP1.mLb.mkD.sorted.bam
696
+ /ref/mblab/data/chipexo/raw_bam/Rpa12_REP2.mLb.mkD.sorted.bam
697
+ /ref/mblab/data/chipexo/raw_bam/Rpa135_REP1.mLb.mkD.sorted.bam
698
+ /ref/mblab/data/chipexo/raw_bam/Rpa135_REP2.mLb.mkD.sorted.bam
699
+ /ref/mblab/data/chipexo/raw_bam/Rpa14_REP1.mLb.mkD.sorted.bam
700
+ /ref/mblab/data/chipexo/raw_bam/Rpa14_REP2.mLb.mkD.sorted.bam
701
+ /ref/mblab/data/chipexo/raw_bam/Rpa190_REP1.mLb.mkD.sorted.bam
702
+ /ref/mblab/data/chipexo/raw_bam/Rpa190_REP2.mLb.mkD.sorted.bam
703
+ /ref/mblab/data/chipexo/raw_bam/Rpa34_REP1.mLb.mkD.sorted.bam
704
+ /ref/mblab/data/chipexo/raw_bam/Rpa34_REP2.mLb.mkD.sorted.bam
705
+ /ref/mblab/data/chipexo/raw_bam/Rpa43_REP1.mLb.mkD.sorted.bam
706
+ /ref/mblab/data/chipexo/raw_bam/Rpa43_REP2.mLb.mkD.sorted.bam
707
+ /ref/mblab/data/chipexo/raw_bam/Rpa49_REP1.mLb.mkD.sorted.bam
708
+ /ref/mblab/data/chipexo/raw_bam/RPB11_REP1.mLb.mkD.sorted.bam
709
+ /ref/mblab/data/chipexo/raw_bam/RPB11_REP2.mLb.mkD.sorted.bam
710
+ /ref/mblab/data/chipexo/raw_bam/Rpb2_REP1.mLb.mkD.sorted.bam
711
+ /ref/mblab/data/chipexo/raw_bam/Rpb2_REP2.mLb.mkD.sorted.bam
712
+ /ref/mblab/data/chipexo/raw_bam/Rpb3_REP1.mLb.mkD.sorted.bam
713
+ /ref/mblab/data/chipexo/raw_bam/Rpb3_REP2.mLb.mkD.sorted.bam
714
+ /ref/mblab/data/chipexo/raw_bam/Rpb3_REP3.mLb.mkD.sorted.bam
715
+ /ref/mblab/data/chipexo/raw_bam/Rpb4_REP1.mLb.mkD.sorted.bam
716
+ /ref/mblab/data/chipexo/raw_bam/Rpb4_REP2.mLb.mkD.sorted.bam
717
+ /ref/mblab/data/chipexo/raw_bam/Rpb7_REP1.mLb.mkD.sorted.bam
718
+ /ref/mblab/data/chipexo/raw_bam/Rpb7_REP2.mLb.mkD.sorted.bam
719
+ /ref/mblab/data/chipexo/raw_bam/Rpb9_REP1.mLb.mkD.sorted.bam
720
+ /ref/mblab/data/chipexo/raw_bam/Rpb9_REP2.mLb.mkD.sorted.bam
721
+ /ref/mblab/data/chipexo/raw_bam/Rpc17_REP1.mLb.mkD.sorted.bam
722
+ /ref/mblab/data/chipexo/raw_bam/Rpc17_REP2.mLb.mkD.sorted.bam
723
+ /ref/mblab/data/chipexo/raw_bam/Rpc19_REP1.mLb.mkD.sorted.bam
724
+ /ref/mblab/data/chipexo/raw_bam/Rpc19_REP2.mLb.mkD.sorted.bam
725
+ /ref/mblab/data/chipexo/raw_bam/Rpc25_REP1.mLb.mkD.sorted.bam
726
+ /ref/mblab/data/chipexo/raw_bam/Rpc25_REP2.mLb.mkD.sorted.bam
727
+ /ref/mblab/data/chipexo/raw_bam/Rpc31_REP1.mLb.mkD.sorted.bam
728
+ /ref/mblab/data/chipexo/raw_bam/Rpc34_REP1.mLb.mkD.sorted.bam
729
+ /ref/mblab/data/chipexo/raw_bam/Rpc34_REP2.mLb.mkD.sorted.bam
730
+ /ref/mblab/data/chipexo/raw_bam/Rpc37_REP1.mLb.mkD.sorted.bam
731
+ /ref/mblab/data/chipexo/raw_bam/Rpc37_REP2.mLb.mkD.sorted.bam
732
+ /ref/mblab/data/chipexo/raw_bam/RPC40_REP1.mLb.mkD.sorted.bam
733
+ /ref/mblab/data/chipexo/raw_bam/RPC40_REP2.mLb.mkD.sorted.bam
734
+ /ref/mblab/data/chipexo/raw_bam/Rpc53_REP1.mLb.mkD.sorted.bam
735
+ /ref/mblab/data/chipexo/raw_bam/Rpc53_REP2.mLb.mkD.sorted.bam
736
+ /ref/mblab/data/chipexo/raw_bam/Rpc82_REP1.mLb.mkD.sorted.bam
737
+ /ref/mblab/data/chipexo/raw_bam/Rpd3_REP1.mLb.mkD.sorted.bam
738
+ /ref/mblab/data/chipexo/raw_bam/Rpd3_REP2.mLb.mkD.sorted.bam
739
+ /ref/mblab/data/chipexo/raw_bam/Rph1_REP1.mLb.mkD.sorted.bam
740
+ /ref/mblab/data/chipexo/raw_bam/Rph1_REP2.mLb.mkD.sorted.bam
741
+ /ref/mblab/data/chipexo/raw_bam/Rpn11_REP1.mLb.mkD.sorted.bam
742
+ /ref/mblab/data/chipexo/raw_bam/Rpn14_REP1.mLb.mkD.sorted.bam
743
+ /ref/mblab/data/chipexo/raw_bam/Rpn4_REP1.mLb.mkD.sorted.bam
744
+ /ref/mblab/data/chipexo/raw_bam/Rpn4_REP2.mLb.mkD.sorted.bam
745
+ /ref/mblab/data/chipexo/raw_bam/Rpo21_REP1.mLb.mkD.sorted.bam
746
+ /ref/mblab/data/chipexo/raw_bam/Rpo21_REP2.mLb.mkD.sorted.bam
747
+ /ref/mblab/data/chipexo/raw_bam/Rpo31_REP1.mLb.mkD.sorted.bam
748
+ /ref/mblab/data/chipexo/raw_bam/Rpo31_REP2.mLb.mkD.sorted.bam
749
+ /ref/mblab/data/chipexo/raw_bam/Rrd1_REP1.mLb.mkD.sorted.bam
750
+ /ref/mblab/data/chipexo/raw_bam/Rrn10_REP1.mLb.mkD.sorted.bam
751
+ /ref/mblab/data/chipexo/raw_bam/Rrn10_REP2.mLb.mkD.sorted.bam
752
+ /ref/mblab/data/chipexo/raw_bam/Rrn11_REP1.mLb.mkD.sorted.bam
753
+ /ref/mblab/data/chipexo/raw_bam/Rrn5_REP1.mLb.mkD.sorted.bam
754
+ /ref/mblab/data/chipexo/raw_bam/Rrn5_REP2.mLb.mkD.sorted.bam
755
+ /ref/mblab/data/chipexo/raw_bam/Rrn6_REP1.mLb.mkD.sorted.bam
756
+ /ref/mblab/data/chipexo/raw_bam/Rrn6_REP2.mLb.mkD.sorted.bam
757
+ /ref/mblab/data/chipexo/raw_bam/Rrn7_REP1.mLb.mkD.sorted.bam
758
+ /ref/mblab/data/chipexo/raw_bam/Rrn9_REP1.mLb.mkD.sorted.bam
759
+ /ref/mblab/data/chipexo/raw_bam/Rrn9_REP2.mLb.mkD.sorted.bam
760
+ /ref/mblab/data/chipexo/raw_bam/Rrp42_REP1.mLb.mkD.sorted.bam
761
+ /ref/mblab/data/chipexo/raw_bam/Rrp4_REP1.mLb.mkD.sorted.bam
762
+ /ref/mblab/data/chipexo/raw_bam/Rsc1_REP1.mLb.mkD.sorted.bam
763
+ /ref/mblab/data/chipexo/raw_bam/Rsc1_REP2.mLb.mkD.sorted.bam
764
+ /ref/mblab/data/chipexo/raw_bam/Rsc1_REP3.mLb.mkD.sorted.bam
765
+ /ref/mblab/data/chipexo/raw_bam/Rsc1_REP4.mLb.mkD.sorted.bam
766
+ /ref/mblab/data/chipexo/raw_bam/Rsc2_REP1.mLb.mkD.sorted.bam
767
+ /ref/mblab/data/chipexo/raw_bam/Rsc30_REP1.mLb.mkD.sorted.bam
768
+ /ref/mblab/data/chipexo/raw_bam/Rsc3_REP1.mLb.mkD.sorted.bam
769
+ /ref/mblab/data/chipexo/raw_bam/Rsc3_REP2.mLb.mkD.sorted.bam
770
+ /ref/mblab/data/chipexo/raw_bam/Rsc3_REP3.mLb.mkD.sorted.bam
771
+ /ref/mblab/data/chipexo/raw_bam/Rsc3_REP4.mLb.mkD.sorted.bam
772
+ /ref/mblab/data/chipexo/raw_bam/RSC4_REP1.mLb.mkD.sorted.bam
773
+ /ref/mblab/data/chipexo/raw_bam/Rsc58_REP1.mLb.mkD.sorted.bam
774
+ /ref/mblab/data/chipexo/raw_bam/Rsc58_REP2.mLb.mkD.sorted.bam
775
+ /ref/mblab/data/chipexo/raw_bam/Rsc58_REP3.mLb.mkD.sorted.bam
776
+ /ref/mblab/data/chipexo/raw_bam/Rsc6_REP1.mLb.mkD.sorted.bam
777
+ /ref/mblab/data/chipexo/raw_bam/Rsc6_REP2.mLb.mkD.sorted.bam
778
+ /ref/mblab/data/chipexo/raw_bam/Rsc6_REP3.mLb.mkD.sorted.bam
779
+ /ref/mblab/data/chipexo/raw_bam/Rsc8_REP1.mLb.mkD.sorted.bam
780
+ /ref/mblab/data/chipexo/raw_bam/Rsc8_REP2.mLb.mkD.sorted.bam
781
+ /ref/mblab/data/chipexo/raw_bam/Rsc9_REP1.mLb.mkD.sorted.bam
782
+ /ref/mblab/data/chipexo/raw_bam/Rsc9_REP2.mLb.mkD.sorted.bam
783
+ /ref/mblab/data/chipexo/raw_bam/Rsc9_REP3.mLb.mkD.sorted.bam
784
+ /ref/mblab/data/chipexo/raw_bam/Rsc9_REP4.mLb.mkD.sorted.bam
785
+ /ref/mblab/data/chipexo/raw_bam/Rsp5_REP1.mLb.mkD.sorted.bam
786
+ /ref/mblab/data/chipexo/raw_bam/Rtf1_REP1.mLb.mkD.sorted.bam
787
+ /ref/mblab/data/chipexo/raw_bam/Rtf1_REP2.mLb.mkD.sorted.bam
788
+ /ref/mblab/data/chipexo/raw_bam/Rtg1_REP1.mLb.mkD.sorted.bam
789
+ /ref/mblab/data/chipexo/raw_bam/Rtg2_REP1.mLb.mkD.sorted.bam
790
+ /ref/mblab/data/chipexo/raw_bam/Rtg3_REP1.mLb.mkD.sorted.bam
791
+ /ref/mblab/data/chipexo/raw_bam/Rtg3_REP2.mLb.mkD.sorted.bam
792
+ /ref/mblab/data/chipexo/raw_bam/Rtr1_REP1.mLb.mkD.sorted.bam
793
+ /ref/mblab/data/chipexo/raw_bam/Rts2_REP1.mLb.mkD.sorted.bam
794
+ /ref/mblab/data/chipexo/raw_bam/Rts2_REP2.mLb.mkD.sorted.bam
795
+ /ref/mblab/data/chipexo/raw_bam/Rtt102_REP1.mLb.mkD.sorted.bam
796
+ /ref/mblab/data/chipexo/raw_bam/Rtt102_REP2.mLb.mkD.sorted.bam
797
+ /ref/mblab/data/chipexo/raw_bam/Rtt103_REP1.mLb.mkD.sorted.bam
798
+ /ref/mblab/data/chipexo/raw_bam/Rtt103_REP2.mLb.mkD.sorted.bam
799
+ /ref/mblab/data/chipexo/raw_bam/Rtt106_REP1.mLb.mkD.sorted.bam
800
+ /ref/mblab/data/chipexo/raw_bam/Rtt109_REP1.mLb.mkD.sorted.bam
801
+ /ref/mblab/data/chipexo/raw_bam/Rvb1_REP1.mLb.mkD.sorted.bam
802
+ /ref/mblab/data/chipexo/raw_bam/Rvb1_REP2.mLb.mkD.sorted.bam
803
+ /ref/mblab/data/chipexo/raw_bam/Rvb2_REP1.mLb.mkD.sorted.bam
804
+ /ref/mblab/data/chipexo/raw_bam/Rxt1_REP1.mLb.mkD.sorted.bam
805
+ /ref/mblab/data/chipexo/raw_bam/Rxt1_REP2.mLb.mkD.sorted.bam
806
+ /ref/mblab/data/chipexo/raw_bam/Rxt2_REP1.mLb.mkD.sorted.bam
807
+ /ref/mblab/data/chipexo/raw_bam/Rxt2_REP2.mLb.mkD.sorted.bam
808
+ /ref/mblab/data/chipexo/raw_bam/Rxt3_REP1.mLb.mkD.sorted.bam
809
+ /ref/mblab/data/chipexo/raw_bam/Rxt3_REP2.mLb.mkD.sorted.bam
810
+ /ref/mblab/data/chipexo/raw_bam/Sam4_REP1.mLb.mkD.sorted.bam
811
+ /ref/mblab/data/chipexo/raw_bam/Sap30_REP1.mLb.mkD.sorted.bam
812
+ /ref/mblab/data/chipexo/raw_bam/Sap30_REP2.mLb.mkD.sorted.bam
813
+ /ref/mblab/data/chipexo/raw_bam/Sas2_REP1.mLb.mkD.sorted.bam
814
+ /ref/mblab/data/chipexo/raw_bam/Sas3_REP1.mLb.mkD.sorted.bam
815
+ /ref/mblab/data/chipexo/raw_bam/Sas4_REP1.mLb.mkD.sorted.bam
816
+ /ref/mblab/data/chipexo/raw_bam/Sas5_REP1.mLb.mkD.sorted.bam
817
+ /ref/mblab/data/chipexo/raw_bam/Scc2_REP1.mLb.mkD.sorted.bam
818
+ /ref/mblab/data/chipexo/raw_bam/Scc2_REP2.mLb.mkD.sorted.bam
819
+ /ref/mblab/data/chipexo/raw_bam/Scc4_REP1.mLb.mkD.sorted.bam
820
+ /ref/mblab/data/chipexo/raw_bam/Sch9_REP1.mLb.mkD.sorted.bam
821
+ /ref/mblab/data/chipexo/raw_bam/Sda1_REP1.mLb.mkD.sorted.bam
822
+ /ref/mblab/data/chipexo/raw_bam/Sdc1_REP1.mLb.mkD.sorted.bam
823
+ /ref/mblab/data/chipexo/raw_bam/Sdc1_REP2.mLb.mkD.sorted.bam
824
+ /ref/mblab/data/chipexo/raw_bam/Sds3_REP1.mLb.mkD.sorted.bam
825
+ /ref/mblab/data/chipexo/raw_bam/Sen1_REP1.mLb.mkD.sorted.bam
826
+ /ref/mblab/data/chipexo/raw_bam/Sen1_REP2.mLb.mkD.sorted.bam
827
+ /ref/mblab/data/chipexo/raw_bam/Ser2_REP1.mLb.mkD.sorted.bam
828
+ /ref/mblab/data/chipexo/raw_bam/Set1_REP1.mLb.mkD.sorted.bam
829
+ /ref/mblab/data/chipexo/raw_bam/Set1_REP2.mLb.mkD.sorted.bam
830
+ /ref/mblab/data/chipexo/raw_bam/Set2_REP1.mLb.mkD.sorted.bam
831
+ /ref/mblab/data/chipexo/raw_bam/Set2_REP2.mLb.mkD.sorted.bam
832
+ /ref/mblab/data/chipexo/raw_bam/Set3_REP1.mLb.mkD.sorted.bam
833
+ /ref/mblab/data/chipexo/raw_bam/Set3_REP2.mLb.mkD.sorted.bam
834
+ /ref/mblab/data/chipexo/raw_bam/Set5_REP1.mLb.mkD.sorted.bam
835
+ /ref/mblab/data/chipexo/raw_bam/Sfh1_REP1.mLb.mkD.sorted.bam
836
+ /ref/mblab/data/chipexo/raw_bam/Sfh1_REP2.mLb.mkD.sorted.bam
837
+ /ref/mblab/data/chipexo/raw_bam/Sfl1_REP1.mLb.mkD.sorted.bam
838
+ /ref/mblab/data/chipexo/raw_bam/Sfl1_REP2.mLb.mkD.sorted.bam
839
+ /ref/mblab/data/chipexo/raw_bam/Sfp1_REP1.mLb.mkD.sorted.bam
840
+ /ref/mblab/data/chipexo/raw_bam/Sfp1_REP2.mLb.mkD.sorted.bam
841
+ /ref/mblab/data/chipexo/raw_bam/Sgf11_REP1.mLb.mkD.sorted.bam
842
+ /ref/mblab/data/chipexo/raw_bam/Sgf11_REP2.mLb.mkD.sorted.bam
843
+ /ref/mblab/data/chipexo/raw_bam/Sgf11_REP3.mLb.mkD.sorted.bam
844
+ /ref/mblab/data/chipexo/raw_bam/Sgf11_REP4.mLb.mkD.sorted.bam
845
+ /ref/mblab/data/chipexo/raw_bam/Sgf29_REP1.mLb.mkD.sorted.bam
846
+ /ref/mblab/data/chipexo/raw_bam/Sgf29_REP2.mLb.mkD.sorted.bam
847
+ /ref/mblab/data/chipexo/raw_bam/Sgf29_REP3.mLb.mkD.sorted.bam
848
+ /ref/mblab/data/chipexo/raw_bam/Sgf73_REP1.mLb.mkD.sorted.bam
849
+ /ref/mblab/data/chipexo/raw_bam/Sgf73_REP2.mLb.mkD.sorted.bam
850
+ /ref/mblab/data/chipexo/raw_bam/Sgf73_REP3.mLb.mkD.sorted.bam
851
+ /ref/mblab/data/chipexo/raw_bam/Sgi1_REP1.mLb.mkD.sorted.bam
852
+ /ref/mblab/data/chipexo/raw_bam/Sgv1_REP1.mLb.mkD.sorted.bam
853
+ /ref/mblab/data/chipexo/raw_bam/Sgv1_REP2.mLb.mkD.sorted.bam
854
+ /ref/mblab/data/chipexo/raw_bam/Shg1_REP1.mLb.mkD.sorted.bam
855
+ /ref/mblab/data/chipexo/raw_bam/Shg1_REP2.mLb.mkD.sorted.bam
856
+ /ref/mblab/data/chipexo/raw_bam/Sif2_REP1.mLb.mkD.sorted.bam
857
+ /ref/mblab/data/chipexo/raw_bam/Sif2_REP2.mLb.mkD.sorted.bam
858
+ /ref/mblab/data/chipexo/raw_bam/Sin3_REP1.mLb.mkD.sorted.bam
859
+ /ref/mblab/data/chipexo/raw_bam/Sin3_REP2.mLb.mkD.sorted.bam
860
+ /ref/mblab/data/chipexo/raw_bam/Sin4_REP1.mLb.mkD.sorted.bam
861
+ /ref/mblab/data/chipexo/raw_bam/Sin4_REP2.mLb.mkD.sorted.bam
862
+ /ref/mblab/data/chipexo/raw_bam/Sip3_REP1.mLb.mkD.sorted.bam
863
+ /ref/mblab/data/chipexo/raw_bam/Sip4_REP1.mLb.mkD.sorted.bam
864
+ /ref/mblab/data/chipexo/raw_bam/Sir2_REP1.mLb.mkD.sorted.bam
865
+ /ref/mblab/data/chipexo/raw_bam/Sir2_REP2.mLb.mkD.sorted.bam
866
+ /ref/mblab/data/chipexo/raw_bam/Sir3_REP1.mLb.mkD.sorted.bam
867
+ /ref/mblab/data/chipexo/raw_bam/Sir3_REP2.mLb.mkD.sorted.bam
868
+ /ref/mblab/data/chipexo/raw_bam/Sir4_REP1.mLb.mkD.sorted.bam
869
+ /ref/mblab/data/chipexo/raw_bam/Sir4_REP2.mLb.mkD.sorted.bam
870
+ /ref/mblab/data/chipexo/raw_bam/Ski6_REP1.mLb.mkD.sorted.bam
871
+ /ref/mblab/data/chipexo/raw_bam/Skn7_REP1.mLb.mkD.sorted.bam
872
+ /ref/mblab/data/chipexo/raw_bam/Skn7_REP2.mLb.mkD.sorted.bam
873
+ /ref/mblab/data/chipexo/raw_bam/Sko1_REP1.mLb.mkD.sorted.bam
874
+ /ref/mblab/data/chipexo/raw_bam/Sko1_REP2.mLb.mkD.sorted.bam
875
+ /ref/mblab/data/chipexo/raw_bam/Skp1_REP1.mLb.mkD.sorted.bam
876
+ /ref/mblab/data/chipexo/raw_bam/Sks1_REP1.mLb.mkD.sorted.bam
877
+ /ref/mblab/data/chipexo/raw_bam/Slt2_REP1.mLb.mkD.sorted.bam
878
+ /ref/mblab/data/chipexo/raw_bam/Smc1_REP1.mLb.mkD.sorted.bam
879
+ /ref/mblab/data/chipexo/raw_bam/Smc1_REP2.mLb.mkD.sorted.bam
880
+ /ref/mblab/data/chipexo/raw_bam/Smc3_REP1.mLb.mkD.sorted.bam
881
+ /ref/mblab/data/chipexo/raw_bam/Smc3_REP2.mLb.mkD.sorted.bam
882
+ /ref/mblab/data/chipexo/raw_bam/Smc4_REP1.mLb.mkD.sorted.bam
883
+ /ref/mblab/data/chipexo/raw_bam/Smc4_REP2.mLb.mkD.sorted.bam
884
+ /ref/mblab/data/chipexo/raw_bam/Smd1_REP1.mLb.mkD.sorted.bam
885
+ /ref/mblab/data/chipexo/raw_bam/Smd1_REP2.mLb.mkD.sorted.bam
886
+ /ref/mblab/data/chipexo/raw_bam/Sml1_REP1.mLb.mkD.sorted.bam
887
+ /ref/mblab/data/chipexo/raw_bam/Smp1_REP1.mLb.mkD.sorted.bam
888
+ /ref/mblab/data/chipexo/raw_bam/Smt3_REP1.mLb.mkD.sorted.bam
889
+ /ref/mblab/data/chipexo/raw_bam/Snf11_REP1.mLb.mkD.sorted.bam
890
+ /ref/mblab/data/chipexo/raw_bam/Snf11_REP2.mLb.mkD.sorted.bam
891
+ /ref/mblab/data/chipexo/raw_bam/Snf1_REP1.mLb.mkD.sorted.bam
892
+ /ref/mblab/data/chipexo/raw_bam/Snf2_REP1.mLb.mkD.sorted.bam
893
+ /ref/mblab/data/chipexo/raw_bam/Snf2_REP2.mLb.mkD.sorted.bam
894
+ /ref/mblab/data/chipexo/raw_bam/Snf4_REP1.mLb.mkD.sorted.bam
895
+ /ref/mblab/data/chipexo/raw_bam/Snf5_REP1.mLb.mkD.sorted.bam
896
+ /ref/mblab/data/chipexo/raw_bam/Snf6_REP1.mLb.mkD.sorted.bam
897
+ /ref/mblab/data/chipexo/raw_bam/Snf6_REP2.mLb.mkD.sorted.bam
898
+ /ref/mblab/data/chipexo/raw_bam/Snf7_REP1.mLb.mkD.sorted.bam
899
+ /ref/mblab/data/chipexo/raw_bam/Snf8_REP1.mLb.mkD.sorted.bam
900
+ /ref/mblab/data/chipexo/raw_bam/Snt1_REP1.mLb.mkD.sorted.bam
901
+ /ref/mblab/data/chipexo/raw_bam/Snt2_REP1.mLb.mkD.sorted.bam
902
+ /ref/mblab/data/chipexo/raw_bam/Snt2_REP2.mLb.mkD.sorted.bam
903
+ /ref/mblab/data/chipexo/raw_bam/Sod1_REP1.mLb.mkD.sorted.bam
904
+ /ref/mblab/data/chipexo/raw_bam/Soh1_REP1.mLb.mkD.sorted.bam
905
+ /ref/mblab/data/chipexo/raw_bam/Soh1_REP2.mLb.mkD.sorted.bam
906
+ /ref/mblab/data/chipexo/raw_bam/Sok2_REP1.mLb.mkD.sorted.bam
907
+ /ref/mblab/data/chipexo/raw_bam/Sok2_REP2.mLb.mkD.sorted.bam
908
+ /ref/mblab/data/chipexo/raw_bam/Spe2_REP1.mLb.mkD.sorted.bam
909
+ /ref/mblab/data/chipexo/raw_bam/Spp1_REP1.mLb.mkD.sorted.bam
910
+ /ref/mblab/data/chipexo/raw_bam/Spp1_REP2.mLb.mkD.sorted.bam
911
+ /ref/mblab/data/chipexo/raw_bam/Spt10_REP1.mLb.mkD.sorted.bam
912
+ /ref/mblab/data/chipexo/raw_bam/Spt10_REP2.mLb.mkD.sorted.bam
913
+ /ref/mblab/data/chipexo/raw_bam/Spt15_REP1.mLb.mkD.sorted.bam
914
+ /ref/mblab/data/chipexo/raw_bam/Spt15_REP2.mLb.mkD.sorted.bam
915
+ /ref/mblab/data/chipexo/raw_bam/Spt15_REP3.mLb.mkD.sorted.bam
916
+ /ref/mblab/data/chipexo/raw_bam/Spt15_REP4.mLb.mkD.sorted.bam
917
+ /ref/mblab/data/chipexo/raw_bam/Spt16_REP1.mLb.mkD.sorted.bam
918
+ /ref/mblab/data/chipexo/raw_bam/Spt16_REP2.mLb.mkD.sorted.bam
919
+ /ref/mblab/data/chipexo/raw_bam/Spt16_REP3.mLb.mkD.sorted.bam
920
+ /ref/mblab/data/chipexo/raw_bam/Spt20_REP1.mLb.mkD.sorted.bam
921
+ /ref/mblab/data/chipexo/raw_bam/Spt20_REP2.mLb.mkD.sorted.bam
922
+ /ref/mblab/data/chipexo/raw_bam/Spt21_REP1.mLb.mkD.sorted.bam
923
+ /ref/mblab/data/chipexo/raw_bam/Spt21_REP2.mLb.mkD.sorted.bam
924
+ /ref/mblab/data/chipexo/raw_bam/Spt23_REP1.mLb.mkD.sorted.bam
925
+ /ref/mblab/data/chipexo/raw_bam/Spt2_REP1.mLb.mkD.sorted.bam
926
+ /ref/mblab/data/chipexo/raw_bam/Spt2_REP2.mLb.mkD.sorted.bam
927
+ /ref/mblab/data/chipexo/raw_bam/Spt3_REP1.mLb.mkD.sorted.bam
928
+ /ref/mblab/data/chipexo/raw_bam/Spt3_REP2.mLb.mkD.sorted.bam
929
+ /ref/mblab/data/chipexo/raw_bam/Spt3_REP3.mLb.mkD.sorted.bam
930
+ /ref/mblab/data/chipexo/raw_bam/Spt4_REP1.mLb.mkD.sorted.bam
931
+ /ref/mblab/data/chipexo/raw_bam/Spt4_REP2.mLb.mkD.sorted.bam
932
+ /ref/mblab/data/chipexo/raw_bam/Spt5_REP1.mLb.mkD.sorted.bam
933
+ /ref/mblab/data/chipexo/raw_bam/Spt5_REP2.mLb.mkD.sorted.bam
934
+ /ref/mblab/data/chipexo/raw_bam/Spt6_REP1.mLb.mkD.sorted.bam
935
+ /ref/mblab/data/chipexo/raw_bam/Spt6_REP2.mLb.mkD.sorted.bam
936
+ /ref/mblab/data/chipexo/raw_bam/Spt7_REP1.mLb.mkD.sorted.bam
937
+ /ref/mblab/data/chipexo/raw_bam/Spt7_REP2.mLb.mkD.sorted.bam
938
+ /ref/mblab/data/chipexo/raw_bam/Spt7_REP3.mLb.mkD.sorted.bam
939
+ /ref/mblab/data/chipexo/raw_bam/Spt7_REP4.mLb.mkD.sorted.bam
940
+ /ref/mblab/data/chipexo/raw_bam/Spt7_REP5.mLb.mkD.sorted.bam
941
+ /ref/mblab/data/chipexo/raw_bam/Spt7_REP6.mLb.mkD.sorted.bam
942
+ /ref/mblab/data/chipexo/raw_bam/Spt8_REP1.mLb.mkD.sorted.bam
943
+ /ref/mblab/data/chipexo/raw_bam/Spt8_REP2.mLb.mkD.sorted.bam
944
+ /ref/mblab/data/chipexo/raw_bam/Srb2_REP1.mLb.mkD.sorted.bam
945
+ /ref/mblab/data/chipexo/raw_bam/Srb4_REP1.mLb.mkD.sorted.bam
946
+ /ref/mblab/data/chipexo/raw_bam/Srb4_REP2.mLb.mkD.sorted.bam
947
+ /ref/mblab/data/chipexo/raw_bam/Srb5_REP1.mLb.mkD.sorted.bam
948
+ /ref/mblab/data/chipexo/raw_bam/Srb5_REP2.mLb.mkD.sorted.bam
949
+ /ref/mblab/data/chipexo/raw_bam/Srb6_REP1.mLb.mkD.sorted.bam
950
+ /ref/mblab/data/chipexo/raw_bam/Srb6_REP2.mLb.mkD.sorted.bam
951
+ /ref/mblab/data/chipexo/raw_bam/Srb8_REP1.mLb.mkD.sorted.bam
952
+ /ref/mblab/data/chipexo/raw_bam/Srd1_REP1.mLb.mkD.sorted.bam
953
+ /ref/mblab/data/chipexo/raw_bam/Srm1_REP1.mLb.mkD.sorted.bam
954
+ /ref/mblab/data/chipexo/raw_bam/Ssa1_REP1.mLb.mkD.sorted.bam
955
+ /ref/mblab/data/chipexo/raw_bam/Ssl1_REP1.mLb.mkD.sorted.bam
956
+ /ref/mblab/data/chipexo/raw_bam/Ssl1_REP2.mLb.mkD.sorted.bam
957
+ /ref/mblab/data/chipexo/raw_bam/Ssl2_REP1.mLb.mkD.sorted.bam
958
+ /ref/mblab/data/chipexo/raw_bam/Ssl2_REP2.mLb.mkD.sorted.bam
959
+ /ref/mblab/data/chipexo/raw_bam/Ssn2_REP1.mLb.mkD.sorted.bam
960
+ /ref/mblab/data/chipexo/raw_bam/Ssn2_REP2.mLb.mkD.sorted.bam
961
+ /ref/mblab/data/chipexo/raw_bam/Ssn3_REP1.mLb.mkD.sorted.bam
962
+ /ref/mblab/data/chipexo/raw_bam/Ssn8_REP1.mLb.mkD.sorted.bam
963
+ /ref/mblab/data/chipexo/raw_bam/Ssn8_REP2.mLb.mkD.sorted.bam
964
+ /ref/mblab/data/chipexo/raw_bam/Stb1_REP1.mLb.mkD.sorted.bam
965
+ /ref/mblab/data/chipexo/raw_bam/Stb2_REP1.mLb.mkD.sorted.bam
966
+ /ref/mblab/data/chipexo/raw_bam/Stb3_REP1.mLb.mkD.sorted.bam
967
+ /ref/mblab/data/chipexo/raw_bam/Stb3_REP2.mLb.mkD.sorted.bam
968
+ /ref/mblab/data/chipexo/raw_bam/Stb4_REP1.mLb.mkD.sorted.bam
969
+ /ref/mblab/data/chipexo/raw_bam/Stb4_REP2.mLb.mkD.sorted.bam
970
+ /ref/mblab/data/chipexo/raw_bam/Stb5_REP1.mLb.mkD.sorted.bam
971
+ /ref/mblab/data/chipexo/raw_bam/Stb5_REP2.mLb.mkD.sorted.bam
972
+ /ref/mblab/data/chipexo/raw_bam/Stb6_REP1.mLb.mkD.sorted.bam
973
+ /ref/mblab/data/chipexo/raw_bam/Std1_REP1.mLb.mkD.sorted.bam
974
+ /ref/mblab/data/chipexo/raw_bam/Ste12_REP1.mLb.mkD.sorted.bam
975
+ /ref/mblab/data/chipexo/raw_bam/Ste12_REP2.mLb.mkD.sorted.bam
976
+ /ref/mblab/data/chipexo/raw_bam/Sth1_REP1.mLb.mkD.sorted.bam
977
+ /ref/mblab/data/chipexo/raw_bam/Sth1_REP2.mLb.mkD.sorted.bam
978
+ /ref/mblab/data/chipexo/raw_bam/Sth1_REP3.mLb.mkD.sorted.bam
979
+ /ref/mblab/data/chipexo/raw_bam/Stm1_REP1.mLb.mkD.sorted.bam
980
+ /ref/mblab/data/chipexo/raw_bam/Stp1_REP1.mLb.mkD.sorted.bam
981
+ /ref/mblab/data/chipexo/raw_bam/Stp1_REP2.mLb.mkD.sorted.bam
982
+ /ref/mblab/data/chipexo/raw_bam/Stp2_REP1.mLb.mkD.sorted.bam
983
+ /ref/mblab/data/chipexo/raw_bam/Stp2_REP2.mLb.mkD.sorted.bam
984
+ /ref/mblab/data/chipexo/raw_bam/Stp4_REP1.mLb.mkD.sorted.bam
985
+ /ref/mblab/data/chipexo/raw_bam/Stp4_REP2.mLb.mkD.sorted.bam
986
+ /ref/mblab/data/chipexo/raw_bam/Sua7_REP1.mLb.mkD.sorted.bam
987
+ /ref/mblab/data/chipexo/raw_bam/Sua7_REP2.mLb.mkD.sorted.bam
988
+ /ref/mblab/data/chipexo/raw_bam/Sua7_REP3.mLb.mkD.sorted.bam
989
+ /ref/mblab/data/chipexo/raw_bam/Sub1_REP1.mLb.mkD.sorted.bam
990
+ /ref/mblab/data/chipexo/raw_bam/Sub1_REP2.mLb.mkD.sorted.bam
991
+ /ref/mblab/data/chipexo/raw_bam/Sub1_REP3.mLb.mkD.sorted.bam
992
+ /ref/mblab/data/chipexo/raw_bam/Sum1_REP1.mLb.mkD.sorted.bam
993
+ /ref/mblab/data/chipexo/raw_bam/Sum1_REP2.mLb.mkD.sorted.bam
994
+ /ref/mblab/data/chipexo/raw_bam/Sut1_REP1.mLb.mkD.sorted.bam
995
+ /ref/mblab/data/chipexo/raw_bam/Sut1_REP2.mLb.mkD.sorted.bam
996
+ /ref/mblab/data/chipexo/raw_bam/Suv3_REP1.mLb.mkD.sorted.bam
997
+ /ref/mblab/data/chipexo/raw_bam/Swc7_REP1.mLb.mkD.sorted.bam
998
+ /ref/mblab/data/chipexo/raw_bam/Swc7_REP2.mLb.mkD.sorted.bam
999
+ /ref/mblab/data/chipexo/raw_bam/Swd1_REP1.mLb.mkD.sorted.bam
1000
+ /ref/mblab/data/chipexo/raw_bam/Swd1_REP2.mLb.mkD.sorted.bam
1001
+ /ref/mblab/data/chipexo/raw_bam/Swd2_REP1.mLb.mkD.sorted.bam
1002
+ /ref/mblab/data/chipexo/raw_bam/Swd2_REP2.mLb.mkD.sorted.bam
1003
+ /ref/mblab/data/chipexo/raw_bam/Swd3_REP1.mLb.mkD.sorted.bam
1004
+ /ref/mblab/data/chipexo/raw_bam/Swd3_REP2.mLb.mkD.sorted.bam
1005
+ /ref/mblab/data/chipexo/raw_bam/Swi1_REP1.mLb.mkD.sorted.bam
1006
+ /ref/mblab/data/chipexo/raw_bam/Swi1_REP2.mLb.mkD.sorted.bam
1007
+ /ref/mblab/data/chipexo/raw_bam/Swi3_REP1.mLb.mkD.sorted.bam
1008
+ /ref/mblab/data/chipexo/raw_bam/Swi3_REP2.mLb.mkD.sorted.bam
1009
+ /ref/mblab/data/chipexo/raw_bam/Swi4_REP1.mLb.mkD.sorted.bam
1010
+ /ref/mblab/data/chipexo/raw_bam/Swi4_REP2.mLb.mkD.sorted.bam
1011
+ /ref/mblab/data/chipexo/raw_bam/Swi5_REP1.mLb.mkD.sorted.bam
1012
+ /ref/mblab/data/chipexo/raw_bam/Swi5_REP2.mLb.mkD.sorted.bam
1013
+ /ref/mblab/data/chipexo/raw_bam/Swi6_REP1.mLb.mkD.sorted.bam
1014
+ /ref/mblab/data/chipexo/raw_bam/Swi6_REP2.mLb.mkD.sorted.bam
1015
+ /ref/mblab/data/chipexo/raw_bam/Swr1_REP1.mLb.mkD.sorted.bam
1016
+ /ref/mblab/data/chipexo/raw_bam/Swr1_REP2.mLb.mkD.sorted.bam
1017
+ /ref/mblab/data/chipexo/raw_bam/Taf10_REP1.mLb.mkD.sorted.bam
1018
+ /ref/mblab/data/chipexo/raw_bam/Taf10_REP2.mLb.mkD.sorted.bam
1019
+ /ref/mblab/data/chipexo/raw_bam/Taf10_REP3.mLb.mkD.sorted.bam
1020
+ /ref/mblab/data/chipexo/raw_bam/Taf11_REP1.mLb.mkD.sorted.bam
1021
+ /ref/mblab/data/chipexo/raw_bam/Taf11_REP2.mLb.mkD.sorted.bam
1022
+ /ref/mblab/data/chipexo/raw_bam/Taf12_REP1.mLb.mkD.sorted.bam
1023
+ /ref/mblab/data/chipexo/raw_bam/Taf12_REP2.mLb.mkD.sorted.bam
1024
+ /ref/mblab/data/chipexo/raw_bam/Taf13_REP1.mLb.mkD.sorted.bam
1025
+ /ref/mblab/data/chipexo/raw_bam/Taf13_REP2.mLb.mkD.sorted.bam
1026
+ /ref/mblab/data/chipexo/raw_bam/Taf14_REP1.mLb.mkD.sorted.bam
1027
+ /ref/mblab/data/chipexo/raw_bam/Taf14_REP2.mLb.mkD.sorted.bam
1028
+ /ref/mblab/data/chipexo/raw_bam/Taf14_REP3.mLb.mkD.sorted.bam
1029
+ /ref/mblab/data/chipexo/raw_bam/Taf1_REP1.mLb.mkD.sorted.bam
1030
+ /ref/mblab/data/chipexo/raw_bam/Taf1_REP2.mLb.mkD.sorted.bam
1031
+ /ref/mblab/data/chipexo/raw_bam/Taf1_REP3.mLb.mkD.sorted.bam
1032
+ /ref/mblab/data/chipexo/raw_bam/Taf2_REP1.mLb.mkD.sorted.bam
1033
+ /ref/mblab/data/chipexo/raw_bam/Taf2_REP2.mLb.mkD.sorted.bam
1034
+ /ref/mblab/data/chipexo/raw_bam/Taf2_REP3.mLb.mkD.sorted.bam
1035
+ /ref/mblab/data/chipexo/raw_bam/Taf3_REP1.mLb.mkD.sorted.bam
1036
+ /ref/mblab/data/chipexo/raw_bam/Taf3_REP2.mLb.mkD.sorted.bam
1037
+ /ref/mblab/data/chipexo/raw_bam/Taf4_REP1.mLb.mkD.sorted.bam
1038
+ /ref/mblab/data/chipexo/raw_bam/Taf4_REP2.mLb.mkD.sorted.bam
1039
+ /ref/mblab/data/chipexo/raw_bam/Taf4_REP3.mLb.mkD.sorted.bam
1040
+ /ref/mblab/data/chipexo/raw_bam/Taf5_REP1.mLb.mkD.sorted.bam
1041
+ /ref/mblab/data/chipexo/raw_bam/Taf5_REP2.mLb.mkD.sorted.bam
1042
+ /ref/mblab/data/chipexo/raw_bam/Taf5_REP3.mLb.mkD.sorted.bam
1043
+ /ref/mblab/data/chipexo/raw_bam/Taf6_REP1.mLb.mkD.sorted.bam
1044
+ /ref/mblab/data/chipexo/raw_bam/Taf6_REP2.mLb.mkD.sorted.bam
1045
+ /ref/mblab/data/chipexo/raw_bam/Taf6_REP3.mLb.mkD.sorted.bam
1046
+ /ref/mblab/data/chipexo/raw_bam/TAF7_REP1.mLb.mkD.sorted.bam
1047
+ /ref/mblab/data/chipexo/raw_bam/TAF7_REP2.mLb.mkD.sorted.bam
1048
+ /ref/mblab/data/chipexo/raw_bam/TAF7_REP3.mLb.mkD.sorted.bam
1049
+ /ref/mblab/data/chipexo/raw_bam/Taf8_REP1.mLb.mkD.sorted.bam
1050
+ /ref/mblab/data/chipexo/raw_bam/Taf8_REP2.mLb.mkD.sorted.bam
1051
+ /ref/mblab/data/chipexo/raw_bam/Taf9_REP1.mLb.mkD.sorted.bam
1052
+ /ref/mblab/data/chipexo/raw_bam/Taf9_REP2.mLb.mkD.sorted.bam
1053
+ /ref/mblab/data/chipexo/raw_bam/Tap42_REP1.mLb.mkD.sorted.bam
1054
+ /ref/mblab/data/chipexo/raw_bam/Tbf1_REP1.mLb.mkD.sorted.bam
1055
+ /ref/mblab/data/chipexo/raw_bam/Tbf1_REP2.mLb.mkD.sorted.bam
1056
+ /ref/mblab/data/chipexo/raw_bam/Tbs1_REP1.mLb.mkD.sorted.bam
1057
+ /ref/mblab/data/chipexo/raw_bam/Tbs1_REP2.mLb.mkD.sorted.bam
1058
+ /ref/mblab/data/chipexo/raw_bam/Tda9_REP1.mLb.mkD.sorted.bam
1059
+ /ref/mblab/data/chipexo/raw_bam/Tda9_REP2.mLb.mkD.sorted.bam
1060
+ /ref/mblab/data/chipexo/raw_bam/Tea1_REP1.mLb.mkD.sorted.bam
1061
+ /ref/mblab/data/chipexo/raw_bam/Tea1_REP2.mLb.mkD.sorted.bam
1062
+ /ref/mblab/data/chipexo/raw_bam/Tec1_REP1.mLb.mkD.sorted.bam
1063
+ /ref/mblab/data/chipexo/raw_bam/Tel2_REP1.mLb.mkD.sorted.bam
1064
+ /ref/mblab/data/chipexo/raw_bam/TFA1_REP1.mLb.mkD.sorted.bam
1065
+ /ref/mblab/data/chipexo/raw_bam/TFA1_REP2.mLb.mkD.sorted.bam
1066
+ /ref/mblab/data/chipexo/raw_bam/TFA1_REP3.mLb.mkD.sorted.bam
1067
+ /ref/mblab/data/chipexo/raw_bam/Tfa2_REP1.mLb.mkD.sorted.bam
1068
+ /ref/mblab/data/chipexo/raw_bam/Tfa2_REP2.mLb.mkD.sorted.bam
1069
+ /ref/mblab/data/chipexo/raw_bam/Tfb1_REP1.mLb.mkD.sorted.bam
1070
+ /ref/mblab/data/chipexo/raw_bam/Tfb1_REP2.mLb.mkD.sorted.bam
1071
+ /ref/mblab/data/chipexo/raw_bam/Tfb2_REP1.mLb.mkD.sorted.bam
1072
+ /ref/mblab/data/chipexo/raw_bam/Tfb2_REP2.mLb.mkD.sorted.bam
1073
+ /ref/mblab/data/chipexo/raw_bam/Tfb3_REP1.mLb.mkD.sorted.bam
1074
+ /ref/mblab/data/chipexo/raw_bam/Tfb3_REP2.mLb.mkD.sorted.bam
1075
+ /ref/mblab/data/chipexo/raw_bam/Tfb4_REP1.mLb.mkD.sorted.bam
1076
+ /ref/mblab/data/chipexo/raw_bam/Tfb4_REP2.mLb.mkD.sorted.bam
1077
+ /ref/mblab/data/chipexo/raw_bam/Tfb6_REP1.mLb.mkD.sorted.bam
1078
+ /ref/mblab/data/chipexo/raw_bam/TFC1_REP1.mLb.mkD.sorted.bam
1079
+ /ref/mblab/data/chipexo/raw_bam/TFC1_REP2.mLb.mkD.sorted.bam
1080
+ /ref/mblab/data/chipexo/raw_bam/Tfc3_REP1.mLb.mkD.sorted.bam
1081
+ /ref/mblab/data/chipexo/raw_bam/Tfc3_REP2.mLb.mkD.sorted.bam
1082
+ /ref/mblab/data/chipexo/raw_bam/Tfc4_REP1.mLb.mkD.sorted.bam
1083
+ /ref/mblab/data/chipexo/raw_bam/Tfc4_REP2.mLb.mkD.sorted.bam
1084
+ /ref/mblab/data/chipexo/raw_bam/TFC6_REP1.mLb.mkD.sorted.bam
1085
+ /ref/mblab/data/chipexo/raw_bam/TFC6_REP2.mLb.mkD.sorted.bam
1086
+ /ref/mblab/data/chipexo/raw_bam/Tfc7_REP1.mLb.mkD.sorted.bam
1087
+ /ref/mblab/data/chipexo/raw_bam/Tfc7_REP2.mLb.mkD.sorted.bam
1088
+ /ref/mblab/data/chipexo/raw_bam/Tfc8_REP1.mLb.mkD.sorted.bam
1089
+ /ref/mblab/data/chipexo/raw_bam/Tfc8_REP2.mLb.mkD.sorted.bam
1090
+ /ref/mblab/data/chipexo/raw_bam/Tfg1_REP1.mLb.mkD.sorted.bam
1091
+ /ref/mblab/data/chipexo/raw_bam/Tfg1_REP2.mLb.mkD.sorted.bam
1092
+ /ref/mblab/data/chipexo/raw_bam/Tfg2_REP1.mLb.mkD.sorted.bam
1093
+ /ref/mblab/data/chipexo/raw_bam/Thi3_REP1.mLb.mkD.sorted.bam
1094
+ /ref/mblab/data/chipexo/raw_bam/Tho1_REP1.mLb.mkD.sorted.bam
1095
+ /ref/mblab/data/chipexo/raw_bam/Tho1_REP2.mLb.mkD.sorted.bam
1096
+ /ref/mblab/data/chipexo/raw_bam/Thp1_REP1.mLb.mkD.sorted.bam
1097
+ /ref/mblab/data/chipexo/raw_bam/Thp2_REP1.mLb.mkD.sorted.bam
1098
+ /ref/mblab/data/chipexo/raw_bam/Thp2_REP2.mLb.mkD.sorted.bam
1099
+ /ref/mblab/data/chipexo/raw_bam/Tif1_REP1.mLb.mkD.sorted.bam
1100
+ /ref/mblab/data/chipexo/raw_bam/Tip41_REP1.mLb.mkD.sorted.bam
1101
+ /ref/mblab/data/chipexo/raw_bam/Tma46_REP1.mLb.mkD.sorted.bam
1102
+ /ref/mblab/data/chipexo/raw_bam/TOA1_REP1.mLb.mkD.sorted.bam
1103
+ /ref/mblab/data/chipexo/raw_bam/TOA1_REP2.mLb.mkD.sorted.bam
1104
+ /ref/mblab/data/chipexo/raw_bam/TOA1_REP3.mLb.mkD.sorted.bam
1105
+ /ref/mblab/data/chipexo/raw_bam/Tod6_REP1.mLb.mkD.sorted.bam
1106
+ /ref/mblab/data/chipexo/raw_bam/Tom1_REP1.mLb.mkD.sorted.bam
1107
+ /ref/mblab/data/chipexo/raw_bam/TOP1_REP1.mLb.mkD.sorted.bam
1108
+ /ref/mblab/data/chipexo/raw_bam/TOP1_REP2.mLb.mkD.sorted.bam
1109
+ /ref/mblab/data/chipexo/raw_bam/Top2_REP1.mLb.mkD.sorted.bam
1110
+ /ref/mblab/data/chipexo/raw_bam/Top3_REP1.mLb.mkD.sorted.bam
1111
+ /ref/mblab/data/chipexo/raw_bam/Tor1_REP1.mLb.mkD.sorted.bam
1112
+ /ref/mblab/data/chipexo/raw_bam/Tos4_REP1.mLb.mkD.sorted.bam
1113
+ /ref/mblab/data/chipexo/raw_bam/Tpd3_REP1.mLb.mkD.sorted.bam
1114
+ /ref/mblab/data/chipexo/raw_bam/Tpk1_REP1.mLb.mkD.sorted.bam
1115
+ /ref/mblab/data/chipexo/raw_bam/Tpk1_REP2.mLb.mkD.sorted.bam
1116
+ /ref/mblab/data/chipexo/raw_bam/Tpk2_REP1.mLb.mkD.sorted.bam
1117
+ /ref/mblab/data/chipexo/raw_bam/Tpk2_REP2.mLb.mkD.sorted.bam
1118
+ /ref/mblab/data/chipexo/raw_bam/Tpk3_REP1.mLb.mkD.sorted.bam
1119
+ /ref/mblab/data/chipexo/raw_bam/Tra1_REP1.mLb.mkD.sorted.bam
1120
+ /ref/mblab/data/chipexo/raw_bam/Trm1_REP1.mLb.mkD.sorted.bam
1121
+ /ref/mblab/data/chipexo/raw_bam/Trp5_REP1.mLb.mkD.sorted.bam
1122
+ /ref/mblab/data/chipexo/raw_bam/Tup1_REP1.mLb.mkD.sorted.bam
1123
+ /ref/mblab/data/chipexo/raw_bam/Tup1_REP2.mLb.mkD.sorted.bam
1124
+ /ref/mblab/data/chipexo/raw_bam/Uaf30_REP1.mLb.mkD.sorted.bam
1125
+ /ref/mblab/data/chipexo/raw_bam/Uaf30_REP2.mLb.mkD.sorted.bam
1126
+ /ref/mblab/data/chipexo/raw_bam/Uba2_REP1.mLb.mkD.sorted.bam
1127
+ /ref/mblab/data/chipexo/raw_bam/Ubc13_REP1.mLb.mkD.sorted.bam
1128
+ /ref/mblab/data/chipexo/raw_bam/Ubp12_REP1.mLb.mkD.sorted.bam
1129
+ /ref/mblab/data/chipexo/raw_bam/Ubp8_REP1.mLb.mkD.sorted.bam
1130
+ /ref/mblab/data/chipexo/raw_bam/Ubp8_REP2.mLb.mkD.sorted.bam
1131
+ /ref/mblab/data/chipexo/raw_bam/Ubp8_REP3.mLb.mkD.sorted.bam
1132
+ /ref/mblab/data/chipexo/raw_bam/Ubp8_REP4.mLb.mkD.sorted.bam
1133
+ /ref/mblab/data/chipexo/raw_bam/Ubp8_REP5.mLb.mkD.sorted.bam
1134
+ /ref/mblab/data/chipexo/raw_bam/Uga3_REP1.mLb.mkD.sorted.bam
1135
+ /ref/mblab/data/chipexo/raw_bam/Ume1_REP1.mLb.mkD.sorted.bam
1136
+ /ref/mblab/data/chipexo/raw_bam/Ume1_REP2.mLb.mkD.sorted.bam
1137
+ /ref/mblab/data/chipexo/raw_bam/Ume6_REP1.mLb.mkD.sorted.bam
1138
+ /ref/mblab/data/chipexo/raw_bam/Ume6_REP2.mLb.mkD.sorted.bam
1139
+ /ref/mblab/data/chipexo/raw_bam/Ung1_REP1.mLb.mkD.sorted.bam
1140
+ /ref/mblab/data/chipexo/raw_bam/Upc2_REP1.mLb.mkD.sorted.bam
1141
+ /ref/mblab/data/chipexo/raw_bam/Ura4_REP1.mLb.mkD.sorted.bam
1142
+ /ref/mblab/data/chipexo/raw_bam/Ura6_REP1.mLb.mkD.sorted.bam
1143
+ /ref/mblab/data/chipexo/raw_bam/Urc2_REP1.mLb.mkD.sorted.bam
1144
+ /ref/mblab/data/chipexo/raw_bam/Urc2_REP2.mLb.mkD.sorted.bam
1145
+ /ref/mblab/data/chipexo/raw_bam/Ure2_REP1.mLb.mkD.sorted.bam
1146
+ /ref/mblab/data/chipexo/raw_bam/Uth1_REP1.mLb.mkD.sorted.bam
1147
+ /ref/mblab/data/chipexo/raw_bam/Utp10_REP1.mLb.mkD.sorted.bam
1148
+ /ref/mblab/data/chipexo/raw_bam/Utp15_REP1.mLb.mkD.sorted.bam
1149
+ /ref/mblab/data/chipexo/raw_bam/Utp4_REP1.mLb.mkD.sorted.bam
1150
+ /ref/mblab/data/chipexo/raw_bam/Utp5_REP1.mLb.mkD.sorted.bam
1151
+ /ref/mblab/data/chipexo/raw_bam/Utp8_REP1.mLb.mkD.sorted.bam
1152
+ /ref/mblab/data/chipexo/raw_bam/Utp9_REP1.mLb.mkD.sorted.bam
1153
+ /ref/mblab/data/chipexo/raw_bam/Vid21_REP1.mLb.mkD.sorted.bam
1154
+ /ref/mblab/data/chipexo/raw_bam/Vid21_REP2.mLb.mkD.sorted.bam
1155
+ /ref/mblab/data/chipexo/raw_bam/Vid22_REP1.mLb.mkD.sorted.bam
1156
+ /ref/mblab/data/chipexo/raw_bam/Vid22_REP2.mLb.mkD.sorted.bam
1157
+ /ref/mblab/data/chipexo/raw_bam/Vid27_REP1.mLb.mkD.sorted.bam
1158
+ /ref/mblab/data/chipexo/raw_bam/Vps36_REP1.mLb.mkD.sorted.bam
1159
+ /ref/mblab/data/chipexo/raw_bam/Vps71_REP1.mLb.mkD.sorted.bam
1160
+ /ref/mblab/data/chipexo/raw_bam/Vps71_REP2.mLb.mkD.sorted.bam
1161
+ /ref/mblab/data/chipexo/raw_bam/Vps72_REP1.mLb.mkD.sorted.bam
1162
+ /ref/mblab/data/chipexo/raw_bam/Vps72_REP2.mLb.mkD.sorted.bam
1163
+ /ref/mblab/data/chipexo/raw_bam/Vps75_REP1.mLb.mkD.sorted.bam
1164
+ /ref/mblab/data/chipexo/raw_bam/War1_REP1.mLb.mkD.sorted.bam
1165
+ /ref/mblab/data/chipexo/raw_bam/War1_REP2.mLb.mkD.sorted.bam
1166
+ /ref/mblab/data/chipexo/raw_bam/Whi5_REP1.mLb.mkD.sorted.bam
1167
+ /ref/mblab/data/chipexo/raw_bam/Whi5_REP2.mLb.mkD.sorted.bam
1168
+ /ref/mblab/data/chipexo/raw_bam/Wtm1_REP1.mLb.mkD.sorted.bam
1169
+ /ref/mblab/data/chipexo/raw_bam/Wtm2_REP1.mLb.mkD.sorted.bam
1170
+ /ref/mblab/data/chipexo/raw_bam/Xbp1_REP1.mLb.mkD.sorted.bam
1171
+ /ref/mblab/data/chipexo/raw_bam/Yaf9_REP1.mLb.mkD.sorted.bam
1172
+ /ref/mblab/data/chipexo/raw_bam/Yap1_REP1.mLb.mkD.sorted.bam
1173
+ /ref/mblab/data/chipexo/raw_bam/Yap1_REP2.mLb.mkD.sorted.bam
1174
+ /ref/mblab/data/chipexo/raw_bam/Yap3_REP1.mLb.mkD.sorted.bam
1175
+ /ref/mblab/data/chipexo/raw_bam/Yap5_REP1.mLb.mkD.sorted.bam
1176
+ /ref/mblab/data/chipexo/raw_bam/Yap5_REP2.mLb.mkD.sorted.bam
1177
+ /ref/mblab/data/chipexo/raw_bam/Yap7_REP1.mLb.mkD.sorted.bam
1178
+ /ref/mblab/data/chipexo/raw_bam/Yap7_REP2.mLb.mkD.sorted.bam
1179
+ /ref/mblab/data/chipexo/raw_bam/Ycg1_REP1.mLb.mkD.sorted.bam
1180
+ /ref/mblab/data/chipexo/raw_bam/Ycs4_REP1.mLb.mkD.sorted.bam
1181
+ /ref/mblab/data/chipexo/raw_bam/Ycs4_REP2.mLb.mkD.sorted.bam
1182
+ /ref/mblab/data/chipexo/raw_bam/Ydr1_REP1.mLb.mkD.sorted.bam
1183
+ /ref/mblab/data/chipexo/raw_bam/Yen1_REP1.mLb.mkD.sorted.bam
1184
+ /ref/mblab/data/chipexo/raw_bam/Yhm2_REP1.mLb.mkD.sorted.bam
1185
+ /ref/mblab/data/chipexo/raw_bam/Yhp1_REP1.mLb.mkD.sorted.bam
1186
+ /ref/mblab/data/chipexo/raw_bam/Yku70_REP1.mLb.mkD.sorted.bam
1187
+ /ref/mblab/data/chipexo/raw_bam/Yku80_REP1.mLb.mkD.sorted.bam
1188
+ /ref/mblab/data/chipexo/raw_bam/Yku80_REP2.mLb.mkD.sorted.bam
1189
+ /ref/mblab/data/chipexo/raw_bam/YLL032C_REP1.mLb.mkD.sorted.bam
1190
+ /ref/mblab/data/chipexo/raw_bam/YLR278C_REP1.mLb.mkD.sorted.bam
1191
+ /ref/mblab/data/chipexo/raw_bam/Yng1_REP1.mLb.mkD.sorted.bam
1192
+ /ref/mblab/data/chipexo/raw_bam/Yng2_REP1.mLb.mkD.sorted.bam
1193
+ /ref/mblab/data/chipexo/raw_bam/Yng2_REP2.mLb.mkD.sorted.bam
1194
+ /ref/mblab/data/chipexo/raw_bam/Yox1_REP1.mLb.mkD.sorted.bam
1195
+ /ref/mblab/data/chipexo/raw_bam/Yox1_REP2.mLb.mkD.sorted.bam
1196
+ /ref/mblab/data/chipexo/raw_bam/Yox1_REP3.mLb.mkD.sorted.bam
1197
+ /ref/mblab/data/chipexo/raw_bam/Ypr1_REP1.mLb.mkD.sorted.bam
1198
+ /ref/mblab/data/chipexo/raw_bam/Yra1_REP1.mLb.mkD.sorted.bam
1199
+ /ref/mblab/data/chipexo/raw_bam/Yrm1_REP1.mLb.mkD.sorted.bam
1200
+ /ref/mblab/data/chipexo/raw_bam/Yrr1_REP1.mLb.mkD.sorted.bam
1201
+ /ref/mblab/data/chipexo/raw_bam/Yrr1_REP2.mLb.mkD.sorted.bam
1202
+ /ref/mblab/data/chipexo/raw_bam/Ysa1_REP1.mLb.mkD.sorted.bam
1203
+ /ref/mblab/data/chipexo/raw_bam/Ysh1_REP1.mLb.mkD.sorted.bam
1204
+ /ref/mblab/data/chipexo/raw_bam/Ysh1_REP2.mLb.mkD.sorted.bam
1205
+ /ref/mblab/data/chipexo/raw_bam/Yta7_REP1.mLb.mkD.sorted.bam
1206
+ /ref/mblab/data/chipexo/raw_bam/Yta7_REP2.mLb.mkD.sorted.bam
1207
+ /ref/mblab/data/chipexo/raw_bam/Zap1_REP1.mLb.mkD.sorted.bam
1208
+ /ref/mblab/data/chipexo/raw_bam/Zap1_REP2.mLb.mkD.sorted.bam
1209
+ /ref/mblab/data/chipexo/raw_bam/Zms1_REP1.mLb.mkD.sorted.bam
1210
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T10.mLb.mkD.sorted.bam
1211
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T11.mLb.mkD.sorted.bam
1212
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T12.mLb.mkD.sorted.bam
1213
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T13.mLb.mkD.sorted.bam
1214
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T14.mLb.mkD.sorted.bam
1215
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T15.mLb.mkD.sorted.bam
1216
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T1.mLb.mkD.sorted.bam
1217
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T2.mLb.mkD.sorted.bam
1218
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T3.mLb.mkD.sorted.bam
1219
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T4.mLb.mkD.sorted.bam
1220
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T5.mLb.mkD.sorted.bam
1221
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T6.mLb.mkD.sorted.bam
1222
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T7.mLb.mkD.sorted.bam
1223
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T8.mLb.mkD.sorted.bam
1224
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T9.mLb.mkD.sorted.bam
scripts/control_lookup.txt ADDED
@@ -0,0 +1,15 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T10.mLb.mkD.sorted.bam
2
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T11.mLb.mkD.sorted.bam
3
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T12.mLb.mkD.sorted.bam
4
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T13.mLb.mkD.sorted.bam
5
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T14.mLb.mkD.sorted.bam
6
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T15.mLb.mkD.sorted.bam
7
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T1.mLb.mkD.sorted.bam
8
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T2.mLb.mkD.sorted.bam
9
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T3.mLb.mkD.sorted.bam
10
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T4.mLb.mkD.sorted.bam
11
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T5.mLb.mkD.sorted.bam
12
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T6.mLb.mkD.sorted.bam
13
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T7.mLb.mkD.sorted.bam
14
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T8.mLb.mkD.sorted.bam
15
+ /ref/mblab/data/chipexo/raw_bam/control_REP1_T9.mLb.mkD.sorted.bam
scripts/count_tags.sh ADDED
@@ -0,0 +1,81 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ #!/bin/bash
2
+
3
+ #SBATCH --time=0-00:30:00 #days-hh:mm:ss
4
+ #SBATCH --mem=1GB
5
+ #SBATCH --cpus-per-task=1
6
+ #SBATCH --output=count_tags.out
7
+ #SBATCH --error=count_tags.err
8
+
9
+ # Enable safe script execution
10
+ set -euo pipefail
11
+
12
+ # Usage:
13
+ # sbatch --array=1-1229 count_tags.sh lookup.txt output_dirname
14
+
15
+ # Load necessary modules
16
+ eval $(spack load --sh samtools)
17
+ eval $(spack load --sh bedtools2)
18
+
19
+ INCLUDE_REGIONS=/scratch/mblab/chasem/recount_chexmix/all_analysis/exclude_regions/keep_regions.bed
20
+
21
+ # Ensure TMPDIR exists
22
+ TMPDIR=${TMPDIR:-/tmp} # Use system-defined TMPDIR or default to /tmp
23
+
24
+ # Read BAM file from lookup.txt based on the array task ID
25
+ if ! read -r bam_file < <(sed -n ${SLURM_ARRAY_TASK_ID}p "$1"); then
26
+ echo "Error: Unable to read BAM file from lookup.txt at line ${SLURM_ARRAY_TASK_ID}" >&2
27
+ exit 1
28
+ fi
29
+
30
+ if [[ -z "${bam_file// }" ]]; then
31
+ echo "Error: BAM file path is empty or whitespace for task ID $SLURM_ARRAY_TASK_ID" >&2
32
+ exit 1
33
+ fi
34
+
35
+ if [[ ! -f "$bam_file" ]]; then
36
+ echo "Error: BAM file does not exist at: $bam_file" >&2
37
+ exit 1
38
+ fi
39
+
40
+ OUTPUT_DIR=$2
41
+
42
+ # Create output directory if it doesn't exist
43
+ mkdir -p $OUTPUT_DIR
44
+
45
+ # Define output filename
46
+ OUTPUT="$(basename "$bam_file" .bam)_r1_5p_cov.txt"
47
+
48
+ # Create a temporary BAM file inside TMPDIR
49
+ tmpbam=$(mktemp -p "$TMPDIR" --suffix=.bam)
50
+
51
+ # Ensure temporary file is deleted on exit (success or failure)
52
+ cleanup() {
53
+ rm -f "$tmpbam"
54
+ }
55
+ trap cleanup EXIT
56
+
57
+ # Run samtools to filter reads and write to tmpbam
58
+ ## flags in order of appearance
59
+ # Properly paired reads
60
+ # Read 1 only
61
+ # Exclude unmapped reads
62
+ # Exclude mate-unmapped reads
63
+ # Exclude secondary alignments
64
+ # Exclude supplementary alignments
65
+ # Exclude PCR/optical duplicates
66
+ # Exclude multi-mappers (MAPQ = 0)
67
+ # Only include reads overlapping these regions (complement of excluded regions from Rossi et al)
68
+ # -L "$INCLUDE_REGIONS" \
69
+ samtools view -h -b \
70
+ -f 0x2 \
71
+ -f 0x40 \
72
+ -F 0x4 \
73
+ -F 0x8 \
74
+ -F 0x100 \
75
+ -F 0x800 \
76
+ -F 0x400 \
77
+ -q 1 \
78
+ "$bam_file" > "$tmpbam"
79
+
80
+ # Run bedtools genomecov on the temporary BAM file
81
+ bedtools genomecov -ibam "$tmpbam" -5 -dz > "$OUTPUT_DIR/$OUTPUT"
scripts/nextflow_config.conf ADDED
@@ -0,0 +1,30 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ process {
2
+ withName: 'DEEPTOOLS_COMPUTEMATRIX' {
3
+ ext.args = [
4
+ 'reference-point',
5
+ '--referencePoint TSS',
6
+ '-b 1000',
7
+ '-a 500',
8
+ '--binSize 10',
9
+ '--missingDataAsZero',
10
+ '--skipZeros',
11
+ '--smartLabels'
12
+ ].join(' ').trim()
13
+ }
14
+
15
+ withName: 'MACS3_CALLPEAK' {
16
+ ext.args = [
17
+ '--keep-dup 1',
18
+ '--format BAM',
19
+ '--nomodel',
20
+ '--shift -15',
21
+ '--extsize 30',
22
+ '--call-summits',
23
+ '--cutoff-analysis',
24
+ params.narrow_peak ? '' : "--broad --broad-cutoff ${params.broad_cutoff}",
25
+ params.save_macs_pileup ? '--bdg --SPMR' : '',
26
+ params.macs_fdr ? "--qvalue ${params.macs_fdr}" : '',
27
+ params.aligner == "chromap" ? "--format BAM" : ''
28
+ ].join(' ').trim()
29
+ }
30
+ }
scripts/nextflow_params.json ADDED
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+ "bed12": "s3://ngi-igenomes/igenomes//Bos_taurus/UCSC/bosTau8/Annotation/Genes/genes.bed",
573
+ "mito_name": "chrM",
574
+ "macs_gsize": {
575
+ "50": 2370644326,
576
+ "75": 2480511357,
577
+ "100": 2567220492,
578
+ "150": 2594494201,
579
+ "200": 2648740387
580
+ }
581
+ },
582
+ "ce10": {
583
+ "fasta": "s3://ngi-igenomes/igenomes//Caenorhabditis_elegans/UCSC/ce10/Sequence/WholeGenomeFasta/genome.fa",
584
+ "bwa": "s3://ngi-igenomes/igenomes//Caenorhabditis_elegans/UCSC/ce10/Sequence/BWAIndex/version0.6.0/",
585
+ "bowtie2": "s3://ngi-igenomes/igenomes//Caenorhabditis_elegans/UCSC/ce10/Sequence/Bowtie2Index/",
586
+ "star": "s3://ngi-igenomes/igenomes//Caenorhabditis_elegans/UCSC/ce10/Sequence/STARIndex/",
587
+ "bismark": "s3://ngi-igenomes/igenomes//Caenorhabditis_elegans/UCSC/ce10/Sequence/BismarkIndex/",
588
+ "gtf": "s3://ngi-igenomes/igenomes//Caenorhabditis_elegans/UCSC/ce10/Annotation/Genes/genes.gtf",
589
+ "bed12": "s3://ngi-igenomes/igenomes//Caenorhabditis_elegans/UCSC/ce10/Annotation/Genes/genes.bed",
590
+ "readme": "s3://ngi-igenomes/igenomes//Caenorhabditis_elegans/UCSC/ce10/Annotation/README.txt",
591
+ "mito_name": "chrM",
592
+ "macs_gsize": {
593
+ "50": 95156190,
594
+ "75": 96995949,
595
+ "100": 98287299,
596
+ "150": 98879728,
597
+ "200": 98769409
598
+ }
599
+ },
600
+ "canFam3": {
601
+ "fasta": "s3://ngi-igenomes/igenomes//Canis_familiaris/UCSC/canFam3/Sequence/WholeGenomeFasta/genome.fa",
602
+ "bwa": "s3://ngi-igenomes/igenomes//Canis_familiaris/UCSC/canFam3/Sequence/BWAIndex/version0.6.0/",
603
+ "bowtie2": "s3://ngi-igenomes/igenomes//Canis_familiaris/UCSC/canFam3/Sequence/Bowtie2Index/",
604
+ "star": "s3://ngi-igenomes/igenomes//Canis_familiaris/UCSC/canFam3/Sequence/STARIndex/",
605
+ "bismark": "s3://ngi-igenomes/igenomes//Canis_familiaris/UCSC/canFam3/Sequence/BismarkIndex/",
606
+ "gtf": "s3://ngi-igenomes/igenomes//Canis_familiaris/UCSC/canFam3/Annotation/Genes/genes.gtf",
607
+ "bed12": "s3://ngi-igenomes/igenomes//Canis_familiaris/UCSC/canFam3/Annotation/Genes/genes.bed",
608
+ "readme": "s3://ngi-igenomes/igenomes//Canis_familiaris/UCSC/canFam3/Annotation/README.txt",
609
+ "mito_name": "chrM",
610
+ "macs_gsize": {
611
+ "50": 2237684358,
612
+ "75": 2279860111,
613
+ "100": 2293979635,
614
+ "150": 2300527794,
615
+ "200": 2313332891
616
+ }
617
+ },
618
+ "danRer10": {
619
+ "fasta": "s3://ngi-igenomes/igenomes//Danio_rerio/UCSC/danRer10/Sequence/WholeGenomeFasta/genome.fa",
620
+ "bwa": "s3://ngi-igenomes/igenomes//Danio_rerio/UCSC/danRer10/Sequence/BWAIndex/version0.6.0/",
621
+ "bowtie2": "s3://ngi-igenomes/igenomes//Danio_rerio/UCSC/danRer10/Sequence/Bowtie2Index/",
622
+ "star": "s3://ngi-igenomes/igenomes//Danio_rerio/UCSC/danRer10/Sequence/STARIndex/",
623
+ "bismark": "s3://ngi-igenomes/igenomes//Danio_rerio/UCSC/danRer10/Sequence/BismarkIndex/",
624
+ "gtf": "s3://ngi-igenomes/igenomes//Danio_rerio/UCSC/danRer10/Annotation/Genes/genes.gtf",
625
+ "bed12": "s3://ngi-igenomes/igenomes//Danio_rerio/UCSC/danRer10/Annotation/Genes/genes.bed",
626
+ "mito_name": "chrM",
627
+ "macs_gsize": {
628
+ "50": 1172895610,
629
+ "75": 1229400206,
630
+ "100": 1253908756,
631
+ "150": 1285330773,
632
+ "200": 1292538906
633
+ }
634
+ },
635
+ "dm6": {
636
+ "fasta": "s3://ngi-igenomes/igenomes//Drosophila_melanogaster/UCSC/dm6/Sequence/WholeGenomeFasta/genome.fa",
637
+ "bwa": "s3://ngi-igenomes/igenomes//Drosophila_melanogaster/UCSC/dm6/Sequence/BWAIndex/version0.6.0/",
638
+ "bowtie2": "s3://ngi-igenomes/igenomes//Drosophila_melanogaster/UCSC/dm6/Sequence/Bowtie2Index/",
639
+ "star": "s3://ngi-igenomes/igenomes//Drosophila_melanogaster/UCSC/dm6/Sequence/STARIndex/",
640
+ "bismark": "s3://ngi-igenomes/igenomes//Drosophila_melanogaster/UCSC/dm6/Sequence/BismarkIndex/",
641
+ "gtf": "s3://ngi-igenomes/igenomes//Drosophila_melanogaster/UCSC/dm6/Annotation/Genes/genes.gtf",
642
+ "bed12": "s3://ngi-igenomes/igenomes//Drosophila_melanogaster/UCSC/dm6/Annotation/Genes/genes.bed",
643
+ "mito_name": "chrM",
644
+ "macs_gsize": {
645
+ "50": 123548253,
646
+ "75": 124886264,
647
+ "100": 126807034,
648
+ "150": 126908682,
649
+ "200": 128599061
650
+ }
651
+ },
652
+ "equCab2": {
653
+ "fasta": "s3://ngi-igenomes/igenomes//Equus_caballus/UCSC/equCab2/Sequence/WholeGenomeFasta/genome.fa",
654
+ "bwa": "s3://ngi-igenomes/igenomes//Equus_caballus/UCSC/equCab2/Sequence/BWAIndex/version0.6.0/",
655
+ "bowtie2": "s3://ngi-igenomes/igenomes//Equus_caballus/UCSC/equCab2/Sequence/Bowtie2Index/",
656
+ "star": "s3://ngi-igenomes/igenomes//Equus_caballus/UCSC/equCab2/Sequence/STARIndex/",
657
+ "bismark": "s3://ngi-igenomes/igenomes//Equus_caballus/UCSC/equCab2/Sequence/BismarkIndex/",
658
+ "gtf": "s3://ngi-igenomes/igenomes//Equus_caballus/UCSC/equCab2/Annotation/Genes/genes.gtf",
659
+ "bed12": "s3://ngi-igenomes/igenomes//Equus_caballus/UCSC/equCab2/Annotation/Genes/genes.bed",
660
+ "readme": "s3://ngi-igenomes/igenomes//Equus_caballus/UCSC/equCab2/Annotation/README.txt",
661
+ "mito_name": "chrM",
662
+ "macs_gsize": {
663
+ "50": 2294980416,
664
+ "75": 2289244826,
665
+ "100": 2334155865,
666
+ "150": 2343297042,
667
+ "200": 2350515523
668
+ }
669
+ },
670
+ "galGal4": {
671
+ "fasta": "s3://ngi-igenomes/igenomes//Gallus_gallus/UCSC/galGal4/Sequence/WholeGenomeFasta/genome.fa",
672
+ "bwa": "s3://ngi-igenomes/igenomes//Gallus_gallus/UCSC/galGal4/Sequence/BWAIndex/version0.6.0/",
673
+ "bowtie2": "s3://ngi-igenomes/igenomes//Gallus_gallus/UCSC/galGal4/Sequence/Bowtie2Index/",
674
+ "star": "s3://ngi-igenomes/igenomes//Gallus_gallus/UCSC/galGal4/Sequence/STARIndex/",
675
+ "bismark": "s3://ngi-igenomes/igenomes//Gallus_gallus/UCSC/galGal4/Sequence/BismarkIndex/",
676
+ "gtf": "s3://ngi-igenomes/igenomes//Gallus_gallus/UCSC/galGal4/Annotation/Genes/genes.gtf",
677
+ "bed12": "s3://ngi-igenomes/igenomes//Gallus_gallus/UCSC/galGal4/Annotation/Genes/genes.bed",
678
+ "readme": "s3://ngi-igenomes/igenomes//Gallus_gallus/UCSC/galGal4/Annotation/README.txt",
679
+ "mito_name": "chrM",
680
+ "macs_gsize": {
681
+ "50": 974987959,
682
+ "75": 978772437,
683
+ "100": 984935167,
684
+ "150": 979442039,
685
+ "200": 991678648
686
+ }
687
+ },
688
+ "panTro4": {
689
+ "fasta": "s3://ngi-igenomes/igenomes//Pan_troglodytes/UCSC/panTro4/Sequence/WholeGenomeFasta/genome.fa",
690
+ "bwa": "s3://ngi-igenomes/igenomes//Pan_troglodytes/UCSC/panTro4/Sequence/BWAIndex/version0.6.0/",
691
+ "bowtie2": "s3://ngi-igenomes/igenomes//Pan_troglodytes/UCSC/panTro4/Sequence/Bowtie2Index/",
692
+ "star": "s3://ngi-igenomes/igenomes//Pan_troglodytes/UCSC/panTro4/Sequence/STARIndex/",
693
+ "bismark": "s3://ngi-igenomes/igenomes//Pan_troglodytes/UCSC/panTro4/Sequence/BismarkIndex/",
694
+ "gtf": "s3://ngi-igenomes/igenomes//Pan_troglodytes/UCSC/panTro4/Annotation/Genes/genes.gtf",
695
+ "bed12": "s3://ngi-igenomes/igenomes//Pan_troglodytes/UCSC/panTro4/Annotation/Genes/genes.bed",
696
+ "readme": "s3://ngi-igenomes/igenomes//Pan_troglodytes/UCSC/panTro4/Annotation/README.txt",
697
+ "mito_name": "chrM",
698
+ "macs_gsize": {
699
+ "50": 2576111695,
700
+ "75": 2702821987,
701
+ "100": 2733435831,
702
+ "150": 2735167196,
703
+ "200": 2738912507
704
+ }
705
+ },
706
+ "rn6": {
707
+ "fasta": "s3://ngi-igenomes/igenomes//Rattus_norvegicus/UCSC/rn6/Sequence/WholeGenomeFasta/genome.fa",
708
+ "bwa": "s3://ngi-igenomes/igenomes//Rattus_norvegicus/UCSC/rn6/Sequence/BWAIndex/version0.6.0/",
709
+ "bowtie2": "s3://ngi-igenomes/igenomes//Rattus_norvegicus/UCSC/rn6/Sequence/Bowtie2Index/",
710
+ "star": "s3://ngi-igenomes/igenomes//Rattus_norvegicus/UCSC/rn6/Sequence/STARIndex/",
711
+ "bismark": "s3://ngi-igenomes/igenomes//Rattus_norvegicus/UCSC/rn6/Sequence/BismarkIndex/",
712
+ "gtf": "s3://ngi-igenomes/igenomes//Rattus_norvegicus/UCSC/rn6/Annotation/Genes/genes.gtf",
713
+ "bed12": "s3://ngi-igenomes/igenomes//Rattus_norvegicus/UCSC/rn6/Annotation/Genes/genes.bed",
714
+ "mito_name": "chrM",
715
+ "macs_gsize": {
716
+ "50": 2375372135,
717
+ "75": 2440746491,
718
+ "100": 2480029900,
719
+ "150": 2477334634,
720
+ "200": 2478552171
721
+ }
722
+ },
723
+ "sacCer3": {
724
+ "fasta": "s3://ngi-igenomes/igenomes//Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/WholeGenomeFasta/genome.fa",
725
+ "bwa": "s3://ngi-igenomes/igenomes//Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/BWAIndex/version0.6.0/",
726
+ "bowtie2": "s3://ngi-igenomes/igenomes//Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/Bowtie2Index/",
727
+ "star": "s3://ngi-igenomes/igenomes//Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/STARIndex/",
728
+ "bismark": "s3://ngi-igenomes/igenomes//Saccharomyces_cerevisiae/UCSC/sacCer3/Sequence/BismarkIndex/",
729
+ "readme": "s3://ngi-igenomes/igenomes//Saccharomyces_cerevisiae/UCSC/sacCer3/Annotation/README.txt",
730
+ "mito_name": "chrM",
731
+ "macs_gsize": {
732
+ "50": 11624332,
733
+ "75": 11693438,
734
+ "100": 11777680,
735
+ "150": 11783749,
736
+ "200": 11825681
737
+ }
738
+ },
739
+ "susScr3": {
740
+ "fasta": "s3://ngi-igenomes/igenomes//Sus_scrofa/UCSC/susScr3/Sequence/WholeGenomeFasta/genome.fa",
741
+ "bwa": "s3://ngi-igenomes/igenomes//Sus_scrofa/UCSC/susScr3/Sequence/BWAIndex/version0.6.0/",
742
+ "bowtie2": "s3://ngi-igenomes/igenomes//Sus_scrofa/UCSC/susScr3/Sequence/Bowtie2Index/",
743
+ "star": "s3://ngi-igenomes/igenomes//Sus_scrofa/UCSC/susScr3/Sequence/STARIndex/",
744
+ "bismark": "s3://ngi-igenomes/igenomes//Sus_scrofa/UCSC/susScr3/Sequence/BismarkIndex/",
745
+ "gtf": "s3://ngi-igenomes/igenomes//Sus_scrofa/UCSC/susScr3/Annotation/Genes/genes.gtf",
746
+ "bed12": "s3://ngi-igenomes/igenomes//Sus_scrofa/UCSC/susScr3/Annotation/Genes/genes.bed",
747
+ "readme": "s3://ngi-igenomes/igenomes//Sus_scrofa/UCSC/susScr3/Annotation/README.txt",
748
+ "mito_name": "chrM",
749
+ "macs_gsize": {
750
+ "50": 2105185708,
751
+ "75": 2131615607,
752
+ "100": 2149244400,
753
+ "150": 2189757848,
754
+ "200": 2203893315
755
+ }
756
+ }
757
+ },
758
+ "bwa_index": null,
759
+ "bowtie2_index": null,
760
+ "chromap_index": null,
761
+ "star_index": null,
762
+ "gff": null,
763
+ "gene_bed": null
764
+ }
scripts/nfcore_chipseq_full_samplesheet.csv ADDED
The diff for this file is too large to render. See raw diff
 
scripts/parse_pugh_genomecov_5p.R ADDED
@@ -0,0 +1,133 @@
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
1
+ ## NOTE: The data is currently on /lts/mblab/downloaded_data/barkai_checseq
2
+ ## and the parquet dataset is on the brentlab-strides aws at s3://yeast-binding-perturbation-data/barkai_checkseq
3
+
4
+ library(tidyverse)
5
+ library(here)
6
+ library(arrow)
7
+
8
+ # genomic feature harmonization table ----
9
+ # see https://huggingface.co/datasets/BrentLab/yeast_genome_resources
10
+ genomefeatures = arrow::open_dataset(here("data/genome_files/hf/features")) %>%
11
+ as_tibble() %>%
12
+ mutate(rownum = row_number())
13
+
14
+ chrmap = read_csv("~/projects/parsing_yeast_database_data/data/genome_files/chrmap.csv.gz")
15
+
16
+ # scp -r chasem@login.htcf.wustl.edu:/lts/mblab/downloaded_data/chipexo/paper_mimic_tag_count_20250718 .
17
+ genomecov_files = list.files(here("data/chip_exo/paper_mimic_tag_count_20250718"), full.names = TRUE)
18
+
19
+ genomecov_df = tibble(
20
+ path = genomecov_files,
21
+ tmp = str_remove(basename(genomecov_files), ".mLb.mkD.sorted_r1_5p_cov.txt")) %>%
22
+ separate(tmp,c('sample', 'replicate'), extra = "merge", remove = FALSE) %>%
23
+ mutate(replicate = ifelse(sample != "control",
24
+ as.integer(str_extract(str_extract(replicate, "REP\\d"), "\\d")),
25
+ as.integer(str_extract(str_extract(replicate, "T\\d+"), "\\d+"))))
26
+
27
+ nf_core_meta = read_csv(here("data/chip_exo/nfcore_chipseq_full_samplesheet.csv")) %>%
28
+ group_by(sample) %>%
29
+ mutate(tmp = row_number()) %>%
30
+ ungroup() %>%
31
+ mutate(replicate = ifelse(sample == "control", tmp, replicate)) %>%
32
+ select(-tmp)
33
+
34
+ genomecov_df_meta = genomecov_df %>%
35
+ left_join(nf_core_meta)
36
+
37
+ pugh_genomecov_tmp <- genomecov_df_meta %>%
38
+ select(sample, replicate, run_accession, yeastepigenome_id, path) %>%
39
+ mutate(sample = tolower(sample)) %>%
40
+ left_join(
41
+ genomefeatures %>%
42
+ select(symbol, locus_tag) %>%
43
+ distinct() %>%
44
+ mutate(sample = tolower(symbol)),
45
+ by = "sample"
46
+ )
47
+
48
+ filled_missing_locus_tag = pugh_genomecov_tmp %>%
49
+ filter(!complete.cases(.)) %>%
50
+ mutate(
51
+ alias_rownum = map_int(sample, function(s) {
52
+ idx <- which(str_detect(genomefeatures$alias, fixed(toupper(s))))
53
+ if (length(idx) > 0) idx[1] else NA_integer_
54
+ }),
55
+ alias_rownum = ifelse(
56
+ is.na(alias_rownum) & str_starts(sample, "y"),
57
+ map_int(sample, function(s) {
58
+ idx <- which(str_detect(genomefeatures$locus_tag, fixed(toupper(s))))
59
+ if (length(idx) > 0) idx[1] else NA_integer_
60
+ }),
61
+ alias_rownum
62
+ )
63
+ ) %>%
64
+ select(-c(symbol, locus_tag)) %>%
65
+ left_join(genomefeatures %>%
66
+ select(rownum, symbol, locus_tag) %>%
67
+ dplyr::rename(alias_rownum=rownum)) %>%
68
+ select(-alias_rownum)
69
+
70
+ pugh_genomecov_meta = pugh_genomecov_tmp %>%
71
+ filter(!is.na(locus_tag)) %>%
72
+ bind_rows(
73
+ filled_missing_locus_tag) %>%
74
+ mutate(regulator_symbol = symbol, regulator_locus_tag = locus_tag)
75
+
76
+ pugh_genomecov_meta %>%
77
+ select(regulator_locus_tag, regulator_symbol,
78
+ run_accession, yeastepigenome_id) %>%
79
+ write_parquet("~/code/hf/rossi_2021/rossi_2021_metadata.parquet",
80
+ compression = "zstd",
81
+ write_statistics = TRUE,
82
+ use_dictionary = c(
83
+ regulator_locus_tag = TRUE,
84
+ regulator_symbol = TRUE
85
+ )
86
+ )
87
+
88
+ process_chipexo_genomecov_file = function(covpath, accession_str){
89
+
90
+ data.table::fread(covpath, sep = "\t", col.names=c('chr', 'pos', 'pileup')) %>%
91
+ left_join(chrmap %>% select(refseq, ucsc) %>%
92
+ dplyr::rename(chr=refseq)) %>%
93
+ mutate(chr = ucsc,
94
+ accession = accession_str) %>%
95
+ select(chr, pos, pileup, accession)
96
+
97
+ }
98
+
99
+
100
+ # Output base directory for partitioned dataset
101
+ output_parquet_dir = file.path(here("data/chip_exo/"), "genome_map")
102
+ dir.create(output_parquet_dir)
103
+
104
+ # Write incrementally
105
+ # for (accession_str in pugh_genomecov_meta$run_accession) {
106
+ #
107
+ # sample = pugh_genomecov_meta %>% filter(run_accession == accession_str) %>% pull(sample)
108
+ # replicate_str = pugh_genomecov_meta %>% filter(run_accession == accession_str) %>% pull(replicate)
109
+ # path = pugh_genomecov_meta %>% filter(run_accession == accession_str) %>% pull(path)
110
+ #
111
+ #
112
+ # message(glue::glue("Processing {sample} ({replicate_str})"))
113
+ #
114
+ # df <- process_chipexo_genomecov_file(
115
+ # path,
116
+ # accession_str
117
+ # )
118
+ #
119
+ # # Write just this sample's data to the appropriate partition
120
+ # arrow::write_dataset(
121
+ # df,
122
+ # path = output_parquet_dir,
123
+ # format = "parquet",
124
+ # partitioning = c("accession"),
125
+ # existing_data_behavior = "overwrite",
126
+ # compression = "zstd",
127
+ # write_statistics = TRUE,
128
+ # use_dictionary = c(
129
+ # chr = TRUE
130
+ # )
131
+ # )
132
+ # }
133
+