Update README.md

README.md

@@ -156,6 +156,51 @@ configs:
       - name: padj
         dtype: float64
         description: Adjusted p-value for multiple testing for the gene
+- config_name: binding_peaks
+  description: Transcription factor binding peaks identified through Calling Cards analysis with enrichment statistics
+  dataset_type: annotated_features
+  default: true
+  data_files:
+    - split: train
+      path: calling_cards_results.parquet
+  dataset_info:
+    features:
+      - name: regulator_locus_tag
+        dtype: string
+        description: Systematic gene name (ORF identifier) of the transcription factor
+        role: regulator_identifier
+      - name: target_locus_tag
+        dtype: string
+        description: Systematic gene name (ORF identifier) of the target gene
+        role: target_identifier
+      - name: rank
+        dtype: int64
+        description: Rank (ties method min rank) of the peak based on pvalue with ties broken by enrichment. Largest rank is most significant.
+      - name: control_count
+        dtype: int64
+        description: Number of tags in the control condition
+      - name: experimental_count
+        dtype: int64
+        description: Number of tags in the experimental condition
+      - name: mu
+        dtype: float64
+        description: Expected count under the null hypothesis (control_count + 1) * (experimental_total_tags / control_total_tags)
+      - name: enrichment
+        dtype: float64
+        description: Enrichment ratio of experimental over control. (experimental_counts / experimental_total) / (control_counts + pseudocount) / control_total
+        role: quantitative_measure
+      - name: log2_enrichment
+        dtype: float64
+        description: Log2-transformed enrichment ratio
+        role: quantitative_measure
+      - name: neg_log10_pvalue
+        dtype: float64
+        description: Negative log10 of the p-value for binding significance
+        role: quantitative_measure
+      - name: neg_log10_qvalue
+        dtype: float64
+        description: Negative log10 of the FDR-adjusted q-value
+        role: quantitative_measure
 ---
 # Rossi 2021