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data: |
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format: "segmamba_npz" |
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root_dir: "/data/your/brats/fullres/train" |
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npz_dir: "/data/your/brats/fullres/train" |
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modalities: ["t1n", "t1c", "t2f", "t2w"] |
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seg_name: "seg" |
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predictions: |
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ours: |
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name: "GliomaSAM3-MoE" |
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dir: "/path/to/ours/predictions" |
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type: "label" |
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baselines: |
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- name: "Baseline-A" |
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dir: "/path/to/baseline_a/pred" |
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type: "label" |
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- name: "Baseline-B" |
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dir: "/path/to/baseline_b/pred" |
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type: "label" |
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- name: "Baseline-C" |
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dir: "/path/to/baseline_c/pred" |
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type: "label" |
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aux_dir: "/path/to/aux_cache" |
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visualization: |
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output_dir: "/path/to/vis_outputs" |
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overlay_modality: "t1c" |
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alpha: 0.45 |
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colors: |
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WT: [1.0, 0.85, 0.0] |
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TC: [0.0, 1.0, 0.25] |
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ET: [1.0, 0.0, 0.0] |
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boundary_region: "ET" |
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frag_bins: [1, 3, 5] |
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scale_bins: [50, 200, 500] |
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cases: |
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qualitative: ["BraTS-GLI-00001", "BraTS-GLI-00002"] |
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et_absent: ["BraTS-GLI-00010"] |
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boundary: ["BraTS-GLI-00003"] |
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tiny_et: ["BraTS-GLI-00004", "BraTS-GLI-00005"] |
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moe: ["BraTS-GLI-00001", "BraTS-GLI-00002"] |
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concept_tokens: ["BraTS-GLI-00001"] |
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dual_domain: ["BraTS-GLI-00001"] |
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ampmix: |
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- base: "BraTS-GLI-00001" |
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mix: "BraTS-GLI-00002" |
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lam: 0.5 |
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cross_year: |
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2021_to_2023: |
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method: |
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name: "Ours-2021" |
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dir: "/path/to/ours_2021/pred" |
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type: "label" |
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cases: ["BraTS-GLI-2023-00001"] |
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2023_to_2021: |
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method: |
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|
name: "Ours-2023" |
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dir: "/path/to/ours_2023/pred" |
|
|
type: "label" |
|
|
cases: ["BraTS-GLI-2021-00001"] |
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failure: ["BraTS-GLI-00006", "BraTS-GLI-00007"] |
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failure_notes: |
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"BraTS-GLI-00006": "low contrast" |
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"BraTS-GLI-00007": "motion artifacts / missing modality" |
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|
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efficiency: |
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case_id: "BraTS-GLI-00001" |
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roi_size: [128, 128, 128] |
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overlap: 0.5 |
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|
