_id stringlengths 2 7 | title stringlengths 1 88 | partition stringclasses 3
values | text stringlengths 31 13.1k | language stringclasses 1
value | meta_information dict |
|---|---|---|---|---|---|
q263100 | get_item_creator | validation | def get_item_creator(item_type):
"""Get item creator according registered item type.
:param item_type: The type of item to be checed.
:type item_type: types.TypeType.
:returns: Creator function. None if type not found.
"""
if item_type not in Pipe.pipe_item_types:
for registered_type in Pipe.pipe_item_types:
| python | {
"resource": ""
} |
q263101 | Pipe.clone | validation | def clone(self):
"""Self-cloning. All its next Pipe objects are cloned too.
:returns: cloned object
"""
| python | {
"resource": ""
} |
q263102 | Pipe.append | validation | def append(self, next):
"""Append next object to pipe tail.
:param next: The Pipe object to be appended to tail.
:type next: Pipe object.
"""
next.chained = True
| python | {
"resource": ""
} |
q263103 | Pipe.iter | validation | def iter(self, prev=None):
"""Return an generator as iterator object.
:param prev: Previous Pipe object which used for data input.
:returns: A generator for iteration.
"""
if self.next:
| python | {
"resource": ""
} |
q263104 | PipeFunction.reduce | validation | def reduce(func):
"""Wrap a reduce function to Pipe object. Reduce function is a function
with at least two arguments. It works like built-in reduce function.
It takes first argument for accumulated result, second argument for
the new data to process. A keyword-based argument named 'init' is
optional. If init is provided, it is used for the initial value of
accumulated result. Or, the initial value is None.
The first argument is the data to be converted. The return data from
filter function should be a boolean value. If true, data can pass.
Otherwise, data is omitted.
:param func: The filter function to be wrapped.
:type func: function object
:param | python | {
"resource": ""
} |
q263105 | _list_networks | validation | def _list_networks():
"""Return a dictionary of network name to active status bools.
Sample virsh net-list output::
Name State Autostart
-----------------------------------------
default active yes
juju-test inactive no
foobar inactive no
Parsing the above would return::
{"default": True, "juju-test": False, "foobar": False}
See: http://goo.gl/kXwfC
"""
| python | {
"resource": ""
} |
q263106 | Captain.flush | validation | def flush(self, line):
"""flush the line to stdout"""
# TODO -- maybe use echo?
| python | {
"resource": ""
} |
q263107 | Captain.execute | validation | def execute(self, arg_str='', **kwargs):
"""runs the passed in arguments and returns an iterator on the output of
running command"""
cmd = "{} {} {}".format(self.cmd_prefix, self.script, arg_str)
expected_ret_code = kwargs.pop('code', 0)
# any kwargs with all capital letters should be considered environment
# variables
environ = self.environ
for k in list(kwargs.keys()):
if k.isupper():
environ[k] = kwargs.pop(k)
# we will allow overriding of these values
kwargs.setdefault("stderr", subprocess.STDOUT)
# we will not allow these to be overridden via kwargs
kwargs["shell"] = True
kwargs["stdout"] = subprocess.PIPE
kwargs["cwd"] = self.cwd
kwargs["env"] = environ
process = None
self.buf = deque(maxlen=self.bufsize)
try:
process = subprocess.Popen(
cmd,
**kwargs
)
# another round of links
# http://stackoverflow.com/a/17413045/5006 (what I used)
# http://stackoverflow.com/questions/2715847/
| python | {
"resource": ""
} |
q263108 | get_request_subfields | validation | def get_request_subfields(root):
"""Build a basic 035 subfield with basic information from the OAI-PMH request.
:param root: ElementTree root node
:return: list of subfield tuples [(..),(..)]
"""
request = root.find('request')
| python | {
"resource": ""
} |
q263109 | strip_xml_namespace | validation | def strip_xml_namespace(root):
"""Strip out namespace data from an ElementTree.
This function is recursive and will traverse all
subnodes to the root element
@param root: the root element
@return: the same root element, minus namespace
"""
try:
| python | {
"resource": ""
} |
q263110 | ConfigDict.load_dict | validation | def load_dict(self, source, namespace=''):
""" Load values from a dictionary structure. Nesting can be used to
represent namespaces.
>>> c = ConfigDict()
>>> c.load_dict({'some': {'namespace': {'key': 'value'} } })
{'some.namespace.key': 'value'}
"""
for key, value in source.items():
if isinstance(key, str):
nskey = (namespace + '.' + key).strip('.')
| python | {
"resource": ""
} |
q263111 | json | validation | def json(request, *args, **kwargs):
"""
The oembed endpoint, or the url to which requests for metadata are passed.
Third parties will want to access this view with URLs for your site's
content and be returned OEmbed metadata.
"""
# coerce to dictionary
params = dict(request.GET.items())
callback = params.pop('callback', None)
url = params.pop('url', None)
if not url:
return HttpResponseBadRequest('Required parameter missing: URL')
try:
provider = oembed.site.provider_for_url(url)
if not provider.provides:
raise OEmbedMissingEndpoint()
except OEmbedMissingEndpoint:
raise Http404('No provider found for %s' % url)
| python | {
"resource": ""
} |
q263112 | consume_json | validation | def consume_json(request):
"""
Extract and return oembed content for given urls.
Required GET params:
urls - list of urls to consume
Optional GET params:
width - maxwidth attribute for oembed content
height - maxheight attribute for oembed content
template_dir - template_dir to use when rendering oembed
Returns:
list of dictionaries with oembed metadata and renderings, json encoded
"""
client = OEmbedConsumer()
urls = request.GET.getlist('urls')
width = request.GET.get('width')
height = request.GET.get('height')
template_dir = request.GET.get('template_dir')
output = {}
ctx = RequestContext(request)
for url in urls:
try:
| python | {
"resource": ""
} |
q263113 | oembed_schema | validation | def oembed_schema(request):
"""
A site profile detailing valid endpoints for a given domain. Allows for
better auto-discovery of embeddable content.
OEmbed-able content lives at a URL that maps to a provider.
"""
current_domain = Site.objects.get_current().domain
url_schemes = [] # a list of dictionaries for all the urls we can match
endpoint = reverse('oembed_json') # the public endpoint for our oembeds
providers = oembed.site.get_providers()
for provider in providers:
# first make sure this provider class is exposed at the public endpoint
if not provider.provides:
continue
match = None
if isinstance(provider, DjangoProvider):
# django providers define their regex_list by using urlreversing
url_pattern = resolver.reverse_dict.get(provider._meta.named_view)
# this regex replacement is set to be non-greedy, which results
# in things like /news/*/*/*/*/ -- this is more explicit
if url_pattern:
regex = re.sub(r'%\(.+?\)s', '*', url_pattern[0][0][0])
match = 'http://%s/%s' % (current_domain, | python | {
"resource": ""
} |
q263114 | main | validation | def main(path):
'''scan path directory and any subdirectories for valid captain scripts'''
basepath = os.path.abspath(os.path.expanduser(str(path)))
echo.h2("Available scripts in {}".format(basepath))
echo.br()
for root_dir, dirs, files in os.walk(basepath, topdown=True):
for f in fnmatch.filter(files, '*.py'):
try:
filepath = os.path.join(root_dir, f)
# super edge case, this makes sure the python script won't start
# an interactive console session which would cause the session
# to start and not allow the for loop to complete
with open(filepath, encoding="UTF-8") as fp:
body = fp.read()
is_console = "InteractiveConsole" in body
is_console = is_console or "code" in body
is_console = is_console and "interact(" in body
if is_console:
continue
s = captain.Script(filepath)
if s.can_run_from_cli():
rel_filepath = s.call_path(basepath)
p = s.parser
echo.h3(rel_filepath)
desc = p.description
if desc:
echo.indent(desc, indent=(" " * 4))
| python | {
"resource": ""
} |
q263115 | ZipTaxClient.make_request_data | validation | def make_request_data(self, zipcode, city, state):
""" Make the request params given location data """
data = {'key': self.api_key,
'postalcode': str(zipcode),
'city': city, | python | {
"resource": ""
} |
q263116 | ZipTaxClient.process_response | validation | def process_response(self, resp, multiple_rates):
""" Get the tax rate from the ZipTax response """
self._check_for_exceptions(resp, multiple_rates)
rates = {}
for result in resp['results']:
rate = ZipTaxClient._cast_tax_rate(result['taxSales'])
| python | {
"resource": ""
} |
q263117 | ZipTaxClient._check_for_exceptions | validation | def _check_for_exceptions(self, resp, multiple_rates):
""" Check if there are exceptions that should be raised """
if resp['rCode'] != 100:
raise exceptions.get_exception_for_code(resp['rCode'])(resp)
results = resp['results']
| python | {
"resource": ""
} |
q263118 | get_all_text | validation | def get_all_text(node):
"""Recursively extract all text from node."""
if node.nodeType == node.TEXT_NODE:
| python | {
"resource": ""
} |
q263119 | ProviderSite.register | validation | def register(self, provider_class):
"""
Registers a provider with the site.
"""
if not issubclass(provider_class, BaseProvider):
raise TypeError('%s is not a subclass of BaseProvider' % provider_class.__name__)
if provider_class in self._registered_providers:
raise AlreadyRegistered('%s is already registered' % provider_class.__name__)
if issubclass(provider_class, DjangoProvider):
# set up signal handler for cache invalidation
signals.post_save.connect(
self.invalidate_stored_oembeds,
sender=provider_class._meta.model
| python | {
"resource": ""
} |
q263120 | ProviderSite.unregister | validation | def unregister(self, provider_class):
"""
Unregisters a provider from the site.
"""
if not issubclass(provider_class, BaseProvider):
raise TypeError('%s must be a subclass of BaseProvider' % provider_class.__name__)
if provider_class not in self._registered_providers:
| python | {
"resource": ""
} |
q263121 | ProviderSite.populate | validation | def populate(self):
"""
Populate the internal registry's dictionary with the regexes for each
provider instance
"""
self._registry = {}
for provider_class in self._registered_providers:
instance = provider_class()
self._registry[instance] = instance.regex
| python | {
"resource": ""
} |
q263122 | ProviderSite.provider_for_url | validation | def provider_for_url(self, url):
"""
Find the right provider for a URL
"""
for provider, regex in self.get_registry().items():
| python | {
"resource": ""
} |
q263123 | ProviderSite.invalidate_stored_oembeds | validation | def invalidate_stored_oembeds(self, sender, instance, created, **kwargs):
"""
A hook for django-based oembed providers to delete any stored | python | {
"resource": ""
} |
q263124 | ProviderSite.embed | validation | def embed(self, url, **kwargs):
"""
The heart of the matter
"""
try:
# first figure out the provider
provider = self.provider_for_url(url)
except OEmbedMissingEndpoint:
raise
else:
try:
# check the database for a cached response, because of certain
# race conditions that exist with get_or_create(), do a filter
# lookup and just grab the first item
stored_match = StoredOEmbed.objects.filter(
match=url,
maxwidth=kwargs.get('maxwidth', None),
maxheight=kwargs.get('maxheight', None),
date_expires__gte=datetime.datetime.now())[0]
return OEmbedResource.create_json(stored_match.response_json)
except IndexError:
# query the endpoint and cache response in db
# prevent None from being passed in as a GET param
params = dict([(k, v) for k, v in kwargs.items() if v])
# request an oembed resource for the url
resource = provider.request_resource(url, **params)
try:
cache_age = int(resource.cache_age)
if cache_age < MIN_OEMBED_TTL:
cache_age = MIN_OEMBED_TTL
except:
cache_age = DEFAULT_OEMBED_TTL
| python | {
"resource": ""
} |
q263125 | ProviderSite.autodiscover | validation | def autodiscover(self, url):
"""
Load up StoredProviders from url if it is an oembed scheme
"""
headers, response = fetch_url(url)
| python | {
"resource": ""
} |
q263126 | ProviderSite.store_providers | validation | def store_providers(self, provider_data):
"""
Iterate over the returned json and try to sort out any new providers
"""
if not hasattr(provider_data, '__iter__'):
raise OEmbedException('Autodiscovered response not iterable')
provider_pks = []
for provider in provider_data:
if 'endpoint' not in provider or \
'matches' not in provider:
continue
resource_type = provider.get('type')
if resource_type not in RESOURCE_TYPES:
continue
stored_provider, created = StoredProvider.objects.get_or_create(
wildcard_regex=provider['matches']
)
if created:
| python | {
"resource": ""
} |
q263127 | DjangoProvider.map_attr | validation | def map_attr(self, mapping, attr, obj):
"""
A kind of cheesy method that allows for callables or attributes to
be used interchangably
"""
if attr not in mapping and hasattr(self, attr):
if not | python | {
"resource": ""
} |
q263128 | DjangoProvider.get_image | validation | def get_image(self, obj):
"""
Return an ImageFileField instance
"""
if | python | {
"resource": ""
} |
q263129 | DjangoProvider.map_to_dictionary | validation | def map_to_dictionary(self, url, obj, **kwargs):
"""
Build a dictionary of metadata for the requested object.
"""
maxwidth = kwargs.get('maxwidth', None)
maxheight = kwargs.get('maxheight', None)
provider_url, provider_name = self.provider_from_url(url)
mapping = {
'version': '1.0',
'url': url,
'provider_name': provider_name,
'provider_url': provider_url,
'type': self.resource_type
}
# a hook
self.preprocess(obj, mapping, **kwargs)
# resize image if we have a photo, otherwise use the given maximums
if self.resource_type == 'photo' and self.get_image(obj):
self.resize_photo(obj, mapping, maxwidth, maxheight)
elif self.resource_type in ('video', 'rich', 'photo'):
width, height = size_to_nearest(
maxwidth,
maxheight,
self._meta.valid_sizes,
self._meta.force_fit
)
mapping.update(width=width, height=height)
# create a thumbnail | python | {
"resource": ""
} |
q263130 | DjangoDateBasedProvider.get_object | validation | def get_object(self, url, month_format='%b', day_format='%d'):
"""
Parses the date from a url and uses it in the query. For objects which
are unique for date.
"""
params = self.get_params(url)
try:
year = params[self._meta.year_part]
month = params[self._meta.month_part]
day = params[self._meta.day_part]
except KeyError:
try:
# named lookups failed, so try to get the date using the first
# three parameters
year, month, day = params['_0'], params['_1'], params['_2']
except KeyError:
raise OEmbedException('Error extracting date from url parameters')
try:
tt = time.strptime('%s-%s-%s' % (year, month, day),
'%s-%s-%s' % ('%Y', month_format, day_format))
date = datetime.date(*tt[:3])
except ValueError:
raise OEmbedException('Error parsing date from: %s' % url)
# apply the date-specific lookups
if isinstance(self._meta.model._meta.get_field(self._meta.date_field), DateTimeField):
min_date = datetime.datetime.combine(date, datetime.time.min)
max_date = datetime.datetime.combine(date, datetime.time.max)
| python | {
"resource": ""
} |
q263131 | Inspire2CDS.get_record | validation | def get_record(self):
"""Override the base."""
self.recid = self.get_recid()
self.remove_controlfields()
self.update_system_numbers()
self.add_systemnumber("Inspire", recid=self.recid)
self.add_control_number("003", "SzGeCERN")
self.update_collections()
self.update_languages()
self.update_reportnumbers()
self.update_authors()
self.update_journals()
self.update_subject_categories("INSPIRE", "SzGeCERN", "categories_cds")
self.update_pagenumber()
self.update_notes()
self.update_experiments()
self.update_isbn()
self.update_dois()
self.update_links_and_ffts()
self.update_date()
self.update_date_year()
self.update_hidden_notes()
self.update_oai_info()
self.update_cnum()
self.update_conference_info()
self.fields_list = [
"909", "541", "961",
"970", "690", "695",
"981",
]
self.strip_fields()
if "ANNOUNCEMENT" in self.collections:
self.update_conference_111()
| python | {
"resource": ""
} |
q263132 | Inspire2CDS.update_oai_info | validation | def update_oai_info(self):
"""Add the 909 OAI info to 035."""
for field in record_get_field_instances(self.record, '909', ind1="C", ind2="O"):
new_subs = []
for tag, value in field[0]:
if tag == "o":
new_subs.append(("a", value))
else:
new_subs.append((tag, value))
| python | {
"resource": ""
} |
q263133 | Inspire2CDS.update_cnum | validation | def update_cnum(self):
"""Check if we shall add cnum in 035."""
if "ConferencePaper" not in self.collections:
cnums = record_get_field_values(self.record, '773', code="w")
for cnum in cnums:
cnum_subs = | python | {
"resource": ""
} |
q263134 | Inspire2CDS.update_hidden_notes | validation | def update_hidden_notes(self):
"""Remove hidden notes and tag a CERN if detected."""
if not self.tag_as_cern:
notes = record_get_field_instances(self.record,
tag="595")
for field in notes:
| python | {
"resource": ""
} |
q263135 | Inspire2CDS.update_notes | validation | def update_notes(self):
"""Remove INSPIRE specific notes."""
fields = record_get_field_instances(self.record, '500')
for field in fields:
subs = field_get_subfields(field)
for sub in subs.get('a', []):
sub = sub.strip() | python | {
"resource": ""
} |
q263136 | Inspire2CDS.update_title_to_proceeding | validation | def update_title_to_proceeding(self):
"""Move title info from 245 to 111 proceeding style."""
titles = record_get_field_instances(self.record,
tag="245")
for title in titles:
subs = field_get_subfields(title)
new_subs = []
if "a" in subs:
new_subs.append(("a", subs['a'][0]))
if "b" in subs:
| python | {
"resource": ""
} |
q263137 | Inspire2CDS.update_reportnumbers | validation | def update_reportnumbers(self):
"""Update reportnumbers."""
report_037_fields = record_get_field_instances(self.record, '037')
for field in report_037_fields:
subs = field_get_subfields(field)
for val in subs.get("a", []):
if "arXiv" not in val:
record_delete_field(self.record,
| python | {
"resource": ""
} |
q263138 | Inspire2CDS.update_isbn | validation | def update_isbn(self):
"""Remove dashes from ISBN."""
isbns = record_get_field_instances(self.record, '020')
for field in isbns:
for idx, (key, value) in enumerate(field[0]):
| python | {
"resource": ""
} |
q263139 | Inspire2CDS.update_dois | validation | def update_dois(self):
"""Remove duplicate BibMatch DOIs."""
dois = record_get_field_instances(self.record, '024', ind1="7")
all_dois = {}
for field in dois:
subs = field_get_subfield_instances(field)
| python | {
"resource": ""
} |
q263140 | Inspire2CDS.update_date_year | validation | def update_date_year(self):
"""260 Date normalization."""
dates = record_get_field_instances(self.record, '260')
for field in dates:
for idx, (key, value) in enumerate(field[0]):
if key == 'c':
field[0][idx] = ('c', value[:4])
elif key == 't':
del field[0][idx]
if not dates:
published_years = record_get_field_values(self.record, "773", code="y")
if published_years:
record_add_field(
| python | {
"resource": ""
} |
q263141 | Inspire2CDS.update_languages | validation | def update_languages(self):
"""041 Language."""
language_fields = record_get_field_instances(self.record, '041')
language = "eng"
record_delete_fields(self.record, "041")
for field in language_fields:
subs = field_get_subfields(field)
| python | {
"resource": ""
} |
q263142 | generate_dirlist_html | validation | def generate_dirlist_html(FS, filepath):
"""
Generate directory listing HTML
Arguments:
FS (FS): filesystem object to read files from
filepath (str): path to generate directory listings for
Keyword Arguments:
list_dir (callable: list[str]): list file names in a directory
isdir (callable: bool): os.path.isdir
Yields:
str: lines of an HTML table
"""
yield '<table class="dirlist">'
if filepath == '/':
filepath = ''
for name in FS.listdir(filepath):
| python | {
"resource": ""
} |
q263143 | check_pkgs_integrity | validation | def check_pkgs_integrity(filelist, logger, ftp_connector,
timeout=120, sleep_time=10):
"""
Checks if files are not being uploaded to server.
@timeout - time after which the script will register an error.
"""
ref_1 = []
ref_2 = []
i = 1
print >> sys.stdout, "\nChecking packages integrity."
for filename in filelist:
# ref_1.append(self.get_remote_file_size(filename))
get_remote_file_size(ftp_connector, filename, ref_1)
print >> sys.stdout, "\nGoing to sleep for %i sec." % (sleep_time,)
time.sleep(sleep_time)
while sleep_time*i < timeout:
for filename in filelist:
# ref_2.append(self.get_remote_file_size(filename))
get_remote_file_size(ftp_connector, filename, ref_2)
if ref_1 == ref_2:
print >> sys.stdout, "\nIntegrity OK:)"
logger.info("Packages integrity OK.")
break
else:
print >> sys.stdout, "\nWaiting %d time for itegrity..." % (i,)
logger.info("\nWaiting %d time | python | {
"resource": ""
} |
q263144 | fix_name_capitalization | validation | def fix_name_capitalization(lastname, givennames):
""" Converts capital letters to lower keeps first letter capital. """
lastnames = lastname.split()
if len(lastnames) == 1:
if '-' in lastname:
names = lastname.split('-')
names = map(lambda a: a[0] + a[1:].lower(), names)
lastname = '-'.join(names)
else:
lastname = lastname[0] + lastname[1:].lower()
else:
names = []
for name in lastnames:
if re.search(r'[A-Z]\.', name):
names.append(name)
| python | {
"resource": ""
} |
q263145 | OEmbedConsumer.extract_oembeds | validation | def extract_oembeds(self, text, maxwidth=None, maxheight=None, resource_type=None):
"""
Scans a block of text and extracts oembed data on any urls,
returning it in a list of dictionaries
"""
parser = | python | {
"resource": ""
} |
q263146 | OEmbedConsumer.strip | validation | def strip(self, text, *args, **kwargs):
"""
Try to maintain parity with what is extracted by extract since strip
will most likely be used in conjunction with extract
"""
if OEMBED_DEFAULT_PARSE_HTML:
extracted = self.extract_oembeds_html(text, *args, **kwargs)
else:
| python | {
"resource": ""
} |
q263147 | autodiscover | validation | def autodiscover():
"""
Automatically build the provider index.
"""
import imp
from django.conf import settings
for app in settings.INSTALLED_APPS:
try:
app_path = __import__(app, {}, {}, [app.split('.')[-1]]).__path__
except AttributeError:
continue
| python | {
"resource": ""
} |
q263148 | select | validation | def select(options=None):
""" pass in a list of options, promt the user to select one, and return the selected option or None """
if not options:
return None
width = len(str(len(options)))
for x,option in enumerate(options):
sys.stdout.write('{:{width}}) {}\n'.format(x+1,option, width=width))
sys.stdout.write('{:>{width}} '.format('#?', width=width+1))
sys.stdout.flush()
if sys.stdin.isatty():
# regular prompt
try:
response = raw_input().strip()
except (EOFError, KeyboardInterrupt):
# handle ctrl-d, ctrl-c
response = ''
else:
# try connecting to current tty, when using pipes
sys.stdin = open("/dev/tty")
try:
response = ''
while True:
response += | python | {
"resource": ""
} |
q263149 | main | validation | def main():
argparser = ArgumentParser()
subparsers = argparser.add_subparsers(dest='selected_subparser')
all_parser = subparsers.add_parser('all')
elsevier_parser = subparsers.add_parser('elsevier')
oxford_parser = subparsers.add_parser('oxford')
springer_parser = subparsers.add_parser('springer')
all_parser.add_argument('--update-credentials', action='store_true')
elsevier_parser.add_argument('--run-locally', action='store_true')
elsevier_parser.add_argument('--package-name')
elsevier_parser.add_argument('--path')
elsevier_parser.add_argument('--CONSYN', action='store_true')
elsevier_parser.add_argument('--update-credentials', action='store_true')
elsevier_parser.add_argument('--extract-nations', action='store_true')
oxford_parser.add_argument('--dont-empty-ftp', action='store_true')
oxford_parser.add_argument('--package-name')
oxford_parser.add_argument('--path')
oxford_parser.add_argument('--update-credentials', action='store_true')
oxford_parser.add_argument('--extract-nations', action='store_true') | python | {
"resource": ""
} |
q263150 | PosPackage.get_record | validation | def get_record(self, record):
""" Reads a dom xml element in oaidc format and
returns the bibrecord object """
self.document = record
rec = create_record()
language = self._get_language()
if language and language != 'en':
record_add_field(rec, '041', subfields=[('a', language)])
publisher = self._get_publisher()
date = self._get_date()
if publisher and date:
record_add_field(rec, '260', subfields=[('b', publisher),
('c', date)])
elif publisher:
record_add_field(rec, '260', subfields=[('b', publisher)])
elif date:
record_add_field(rec, '260', subfields=[('c', date)])
title = self._get_title()
if title:
record_add_field(rec, '245', subfields=[('a', title)])
record_copyright = self._get_copyright()
if record_copyright:
record_add_field(rec, '540', subfields=[('a', record_copyright)])
subject = self._get_subject()
if subject:
record_add_field(rec, '650', ind1='1', ind2='7', subfields=[('a', subject),
('2', 'PoS')])
authors = self._get_authors()
first_author = True
for author in authors:
subfields = [('a', author[0])]
for affiliation in author[1]:
subfields.append(('v', affiliation))
if first_author:
record_add_field(rec, '100', subfields=subfields)
first_author = False
else:
| python | {
"resource": ""
} |
q263151 | progress | validation | def progress(length, **kwargs):
"""display a progress that can update in place
example --
total_length = 1000
with echo.progress(total_length) as p:
for x in range(total_length):
# do something crazy
p.update(x)
length -- int -- the total size of what you will be updating progress on
"""
quiet = False
| python | {
"resource": ""
} |
q263152 | err | validation | def err(format_msg, *args, **kwargs):
'''print format_msg to stderr'''
exc_info | python | {
"resource": ""
} |
q263153 | banner | validation | def banner(*lines, **kwargs):
"""prints a banner
sep -- string -- the character that will be on the line on the top and bottom
and before any of the lines, defaults to *
count -- integer -- the | python | {
"resource": ""
} |
q263154 | table | validation | def table(*columns, **kwargs):
"""
format columned data so we can easily print it out on a console, this just takes
columns of data and it will format it into properly aligned columns, it's not
fancy, but it works for most type of strings that I need it for, like server name
lists.
other formatting options:
http://stackoverflow.com/a/8234511/5006
other packages that probably do this way better:
https://stackoverflow.com/a/26937531/5006
:Example:
>>> echo.table([(1, 2), (3, 4), (5, 6), (7, 8), (9, 0)])
1 2
3 4
5 6
7 8
9 0
>>> echo.table([1, 3, 5, 7, 9], [2, 4, 6, 8, 0])
1 2
3 4
5 6
7 8
9 0
:param *columns: can either be a list of rows or multiple lists representing each
column in the table
:param **kwargs: dict
prefix -- string -- what you want before each row (eg, a tab)
buf_count -- integer -- how many spaces between longest col value and its neighbor
headers -- list -- the headers you want, must match column count
widths -- list -- the widths of each column you want to use, this doesn't have
to match column count, so you can do something like [0, 5] to set the
width of the second column
width -- int -- similar to widths except it will set this value for all columns
"""
ret = []
prefix = kwargs.get('prefix', '')
buf_count = kwargs.get('buf_count', 2)
if len(columns) == 1:
columns = list(columns[0])
else:
# without the list the zip iterator gets spent, I'm sure I can make this
# better
columns = list(zip(*columns))
headers = kwargs.get("headers", [])
if headers:
columns.insert(0, headers)
# we have to go through all the rows and calculate the length of each
# column of each row
widths = kwargs.get("widths", [])
row_counts = Counter()
for i in range(len(widths)):
row_counts[i] = int(widths[i])
width = int(kwargs.get("width", 0))
for row in columns:
for i, c in enumerate(row):
if isinstance(c, basestring):
cl = len(c)
else:
cl = len(str(c))
| python | {
"resource": ""
} |
q263155 | prompt | validation | def prompt(question, choices=None):
"""echo a prompt to the user and wait for an answer
question -- string -- the prompt for the user
choices -- list -- if given, only exit when prompt matches one of the choices
return -- string -- the answer that was given by the user
"""
if not re.match("\s$", question):
question = "{}: ".format(question)
| python | {
"resource": ""
} |
q263156 | SpringerCrawler.get_records | validation | def get_records(self, url):
"""
Returns the records listed in the webpage given as
parameter as a xml String.
@param url: the url of the Journal, Book, Protocol or Reference work
"""
page = urllib2.urlopen(url)
pages = [BeautifulSoup(page)]
#content spread over several pages?
numpag = pages[0].body.findAll('span', attrs={'class': 'number-of-pages'})
if len(numpag) > 0:
if re.search('^\d+$', numpag[0].string):
for i in range(int(numpag[0].string)-1):
page = urllib2.urlopen('%s/page/%i' % (url, i+2))
pages.append(BeautifulSoup(page))
| python | {
"resource": ""
} |
q263157 | OxfordPackage.connect | validation | def connect(self):
"""Logs into the specified ftp server and returns connector."""
for tried_connection_count in range(CFG_FTP_CONNECTION_ATTEMPTS):
try:
self.ftp = FtpHandler(self.config.OXFORD.URL,
self.config.OXFORD.LOGIN,
self.config.OXFORD.PASSWORD)
self.logger.debug(("Successful connection to the "
"Oxford University Press server"))
return
except socket_timeout_exception as err:
self.logger.error(('Failed to connect %d of %d times. '
'Will sleep for %d seconds and try again.')
% (tried_connection_count+1,
| python | {
"resource": ""
} |
q263158 | NuHeatThermostat.schedule_mode | validation | def schedule_mode(self, mode):
"""
Set the thermostat mode
:param mode: The desired mode integer value.
Auto = 1
Temporary hold = 2
Permanent hold = 3
"""
| python | {
"resource": ""
} |
q263159 | NuHeatThermostat.set_target_fahrenheit | validation | def set_target_fahrenheit(self, fahrenheit, mode=config.SCHEDULE_HOLD):
"""
Set the target temperature to the desired fahrenheit, with more granular control of the
hold mode
:param fahrenheit: The desired temperature in F
| python | {
"resource": ""
} |
q263160 | NuHeatThermostat.set_target_celsius | validation | def set_target_celsius(self, celsius, mode=config.SCHEDULE_HOLD):
"""
Set the target temperature to the desired celsius, with more granular control of the hold
mode
:param celsius: The desired temperature in C
:param | python | {
"resource": ""
} |
q263161 | NuHeatThermostat.set_target_temperature | validation | def set_target_temperature(self, temperature, mode=config.SCHEDULE_HOLD):
"""
Updates the target temperature on the NuHeat API
:param temperature: The desired temperature in NuHeat format
:param permanent: Permanently hold the temperature. If set to False, the schedule will
resume at the next programmed event
"""
if temperature < self.min_temperature:
temperature = self.min_temperature
if temperature > self.max_temperature:
temperature = self.max_temperature
| python | {
"resource": ""
} |
q263162 | load_config | validation | def load_config(filename=None, section_option_dict={}):
"""
This function returns a Bunch object from the stated config file.
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
NOTE:
The values are not evaluated by default.
!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
filename:
The desired config file to read.
The config file must be written in a syntax readable to the
ConfigParser module -> INI syntax
[sectionA]
optionA1 = ...
optionA2 = ...
section_option_dict:
A dictionary that contains | python | {
"resource": ""
} |
q263163 | NuHeat.authenticate | validation | def authenticate(self):
"""
Authenticate against the NuHeat API
"""
if self._session_id:
_LOGGER.debug("Using existing NuHeat session")
return
_LOGGER.debug("Creating NuHeat session")
| python | {
"resource": ""
} |
q263164 | NuHeat.request | validation | def request(self, url, method="GET", data=None, params=None, retry=True):
"""
Make a request to the NuHeat API
:param url: The URL to request
:param method: The type of request to make (GET, POST)
:param data: Data to be sent along with POST requests
:param params: Querystring parameters
:param retry: Attempt to re-authenticate and retry request if necessary
"""
headers = config.REQUEST_HEADERS
if params and self._session_id:
params['sessionid'] = self._session_id
if method == "GET":
response = requests.get(url, headers=headers, params=params)
elif method == "POST":
response = requests.post(url, headers=headers, params=params, data=data) | python | {
"resource": ""
} |
q263165 | MathMLParser.handle_starttag | validation | def handle_starttag(self, tag, attrs):
"""Return representation of html start tag and attributes."""
if tag in self.mathml_elements:
final_attr = ""
for key, value in attrs:
| python | {
"resource": ""
} |
q263166 | MathMLParser.handle_endtag | validation | def handle_endtag(self, tag):
"""Return representation of html end tag."""
| python | {
"resource": ""
} |
q263167 | MathMLParser.html_to_text | validation | def html_to_text(cls, html):
"""Return stripped HTML, keeping only MathML."""
s = cls()
s.feed(html)
unescaped_data | python | {
"resource": ""
} |
q263168 | CallbackInspect.is_instance | validation | def is_instance(self):
"""return True if callback is an instance of a class"""
ret = False
val = self.callback
if self.is_class(): return False
ret = not inspect.isfunction(val) and not inspect.ismethod(val)
# if is_py2:
# ret = isinstance(val, types.InstanceType) or hasattr(val, '__dict__') \
# | python | {
"resource": ""
} |
q263169 | CallbackInspect.is_function | validation | def is_function(self):
"""return True if callback is a vanilla plain jane function"""
if | python | {
"resource": ""
} |
q263170 | ScriptKwarg.merge_kwargs | validation | def merge_kwargs(self, kwargs):
"""these kwargs come from the @arg decorator, they are then merged into any
keyword arguments that were automatically generated from the main function
introspection"""
if kwargs:
self.parser_kwargs.update(kwargs)
#self.parser_kwargs['dest'] = self.name
self.parser_kwargs.setdefault('dest', self.name)
# special handling of any passed in values
if 'default' in kwargs:
# NOTE -- this doesn't use .set_default() because that is meant to
# parse from the function definition so it actually has different syntax
# than what the .set_default() method does. eg, @arg("--foo", default=[1, 2]) means
# that the default value should be an array with | python | {
"resource": ""
} |
q263171 | ScriptKwarg.merge_from_list | validation | def merge_from_list(self, list_args):
"""find any matching parser_args from list_args and merge them into this
instance
list_args -- list -- an array of (args, kwargs) tuples
"""
def xs(name, parser_args, list_args):
"""build the generator of matching list_args"""
for args, kwargs in list_args:
if len(set(args) & parser_args) > 0:
yield args, kwargs
| python | {
"resource": ""
} |
q263172 | HelpFormatter._fill_text | validation | def _fill_text(self, text, width, indent):
"""Overridden to not get rid of newlines
https://github.com/python/cpython/blob/2.7/Lib/argparse.py#L620"""
lines = []
for line in text.splitlines(False):
if line:
# https://docs.python.org/2/library/textwrap.html
lines.extend(textwrap.wrap(
line.strip(),
| python | {
"resource": ""
} |
q263173 | make_user_agent | validation | def make_user_agent(component=None):
""" create string suitable for HTTP User-Agent header """
packageinfo = pkg_resources.require("harvestingkit")[0] | python | {
"resource": ""
} |
q263174 | record_add_field | validation | def record_add_field(rec, tag, ind1='', ind2='', subfields=[],
controlfield_value=''):
"""Add a MARCXML datafield as a new child to a XML document."""
if controlfield_value:
doc = etree.Element("controlfield",
attrib={
"tag": tag,
})
doc.text = unicode(controlfield_value)
else:
doc = etree.Element("datafield",
attrib={
"tag": tag,
"ind1": ind1,
| python | {
"resource": ""
} |
q263175 | record_xml_output | validation | def record_xml_output(rec, pretty=True):
"""Given a document, return XML prettified."""
from .html_utils import MathMLParser
ret = etree.tostring(rec, xml_declaration=False)
# Special MathML handling
ret = re.sub("(<)(([\/]?{0}))".format("|[\/]?".join(MathMLParser.mathml_elements)), '<\g<2>', ret)
ret = re.sub(">", '>', ret)
if pretty:
# We are doing our own prettyfication as etree pretty_print is | python | {
"resource": ""
} |
q263176 | escape_for_xml | validation | def escape_for_xml(data, tags_to_keep=None):
"""Transform & and < to XML valid & and <.
Pass a list of tags as string to enable replacement of
'<' globally but keep any XML tags in the list.
"""
data = re.sub("&", "&", data)
if tags_to_keep:
| python | {
"resource": ""
} |
q263177 | format_arxiv_id | validation | def format_arxiv_id(arxiv_id):
"""Properly format arXiv IDs."""
if arxiv_id and "/" not in arxiv_id and "arXiv" not in arxiv_id:
return "arXiv:%s" | python | {
"resource": ""
} |
q263178 | fix_journal_name | validation | def fix_journal_name(journal, knowledge_base):
"""Convert journal name to Inspire's short form."""
if not journal:
return '', ''
if not knowledge_base:
return journal, ''
if len(journal) < 2:
return journal, ''
volume = ''
if (journal[-1] <= 'Z' and journal[-1] >= 'A') \
and (journal[-2] == '.' or journal[-2] == ' '):
volume += journal[-1]
| python | {
"resource": ""
} |
q263179 | add_nations_field | validation | def add_nations_field(authors_subfields):
"""Add correct nations field according to mapping in NATIONS_DEFAULT_MAP."""
from .config import NATIONS_DEFAULT_MAP
result = []
for field in authors_subfields:
if field[0] == 'v':
values = [x.replace('.', '') for x in field[1].split(', ')]
possible_affs = filter(lambda x: x is not None,
map(NATIONS_DEFAULT_MAP.get, values))
if 'CERN' in possible_affs and 'Switzerland' in possible_affs:
| python | {
"resource": ""
} |
q263180 | fix_dashes | validation | def fix_dashes(string):
"""Fix bad Unicode special dashes in string."""
string = string.replace(u'\u05BE', '-')
string = | python | {
"resource": ""
} |
q263181 | fix_title_capitalization | validation | def fix_title_capitalization(title):
"""Try to capitalize properly a title string."""
if re.search("[A-Z]", title) and re.search("[a-z]", title):
return title
word_list = re.split(' +', title)
final = [word_list[0].capitalize()]
for word in word_list[1:]:
if word.upper() in COMMON_ACRONYMS:
| python | {
"resource": ""
} |
q263182 | convert_html_subscripts_to_latex | validation | def convert_html_subscripts_to_latex(text):
"""Convert some HTML tags to latex equivalents."""
text = re.sub("<sub>(.*?)</sub>", r"$_{\1}$", text) | python | {
"resource": ""
} |
q263183 | download_file | validation | def download_file(from_url, to_filename=None,
chunk_size=1024 * 8, retry_count=3):
"""Download URL to a file."""
if not to_filename:
to_filename = get_temporary_file()
session = requests.Session()
adapter = requests.adapters.HTTPAdapter(max_retries=retry_count)
session.mount(from_url, adapter)
| python | {
"resource": ""
} |
q263184 | run_shell_command | validation | def run_shell_command(commands, **kwargs):
"""Run a shell command."""
p = subprocess.Popen(commands,
stdout=subprocess.PIPE,
stderr=subprocess.PIPE,
| python | {
"resource": ""
} |
q263185 | create_logger | validation | def create_logger(name,
filename=None,
logging_level=logging.DEBUG):
"""Create a logger object."""
logger = logging.getLogger(name)
formatter = logging.Formatter(('%(asctime)s - %(name)s - '
| python | {
"resource": ""
} |
q263186 | _do_unzip | validation | def _do_unzip(zipped_file, output_directory):
"""Perform the actual uncompression."""
z = zipfile.ZipFile(zipped_file)
for path in z.namelist():
relative_path = os.path.join(output_directory, path)
dirname, dummy = os.path.split(relative_path)
try:
if relative_path.endswith(os.sep) and not os.path.exists(dirname):
os.makedirs(relative_path)
elif not os.path.exists(relative_path):
dirname = os.path.join(output_directory, os.path.dirname(path))
if os.path.dirname(path) and not | python | {
"resource": ""
} |
q263187 | locate | validation | def locate(pattern, root=os.curdir):
"""Locate all files matching supplied filename pattern recursively."""
for path, dummy, files in os.walk(os.path.abspath(root)):
| python | {
"resource": ""
} |
q263188 | punctuate_authorname | validation | def punctuate_authorname(an):
"""Punctuate author names properly.
Expects input in the form 'Bloggs, J K' and will return 'Bloggs, J. K.'.
"""
name = an.strip()
parts = [x for x in name.split(',') if x != '']
ret_str = ''
for idx, part in enumerate(parts): | python | {
"resource": ""
} |
q263189 | convert_date_to_iso | validation | def convert_date_to_iso(value):
"""Convert a date-value to the ISO date standard."""
date_formats = ["%d %b %Y", "%Y/%m/%d"]
| python | {
"resource": ""
} |
q263190 | convert_date_from_iso_to_human | validation | def convert_date_from_iso_to_human(value):
"""Convert a date-value to the ISO date standard for humans."""
try:
year, month, day = value.split("-")
except ValueError:
# Not separated by "-". Space?
| python | {
"resource": ""
} |
q263191 | convert_images | validation | def convert_images(image_list):
"""Convert list of images to PNG format.
@param: image_list ([string, string, ...]): the list of image files
extracted from the tarball in step 1
@return: image_list ([str, str, ...]): The list of image files when all
have been converted to PNG format.
"""
png_output_contains = 'PNG image'
ret_list = []
for image_file in image_list:
if os.path.isdir(image_file):
continue
dummy1, cmd_out, dummy2 = run_shell_command('file %s', (image_file,))
if cmd_out.find(png_output_contains) > -1:
ret_list.append(image_file)
else:
# we're just going to assume that ImageMagick can convert all
| python | {
"resource": ""
} |
q263192 | get_temporary_file | validation | def get_temporary_file(prefix="tmp_",
suffix="",
directory=None):
"""Generate a safe and closed filepath."""
try:
file_fd, filepath = mkstemp(prefix=prefix,
suffix=suffix,
| python | {
"resource": ""
} |
q263193 | return_letters_from_string | validation | def return_letters_from_string(text):
"""Get letters from string only."""
out = ""
for letter in text:
| python | {
"resource": ""
} |
q263194 | license_is_oa | validation | def license_is_oa(license):
"""Return True if license is compatible with Open Access"""
for oal in OA_LICENSES:
if | python | {
"resource": ""
} |
q263195 | ElsevierPackage._crawl_elsevier_and_find_issue_xml | validation | def _crawl_elsevier_and_find_issue_xml(self):
"""
Information about the current volume, issue, etc. is available
in a file called issue.xml that is available in a higher directory.
"""
self._found_issues = []
if not self.path and not self.package_name:
for issue in self.conn._get_issues():
dirname = issue.rstrip('/issue.xml')
try:
self._normalize_issue_dir_with_dtd(dirname)
self._found_issues.append(dirname)
except Exception as err:
register_exception()
print("ERROR: can't normalize %s: %s" % (dirname, err))
else:
def visit(dummy, dirname, names):
if "issue.xml" in names:
| python | {
"resource": ""
} |
q263196 | ElsevierPackage._normalize_issue_dir_with_dtd | validation | def _normalize_issue_dir_with_dtd(self, path):
"""
issue.xml from Elsevier assume the existence of a local DTD.
This procedure install the DTDs next to the issue.xml file
and normalize it using xmllint in order to resolve all namespaces
and references.
"""
if exists(join(path, 'resolved_issue.xml')):
return
issue_xml_content = open(join(path, 'issue.xml')).read()
sis = ['si510.dtd', 'si520.dtd', 'si540.dtd']
tmp_extracted = 0
for si in sis:
if si in issue_xml_content:
self._extract_correct_dtd_package(si.split('.')[0], path)
tmp_extracted = 1
if not tmp_extracted:
message = "It looks like the path " + path
message += " does not contain an si510, si520 or si540 in issue.xml file"
self.logger.error(message)
raise ValueError(message)
| python | {
"resource": ""
} |
q263197 | ElsevierPackage._normalize_article_dir_with_dtd | validation | def _normalize_article_dir_with_dtd(self, path):
"""
main.xml from Elsevier assume the existence of a local DTD.
This procedure install the DTDs next to the main.xml file
and normalize it using xmllint in order to resolve all namespaces
and references.
"""
if exists(join(path, 'resolved_main.xml')):
return
main_xml_content = open(join(path, 'main.xml')).read()
arts = ['art501.dtd','art510.dtd','art520.dtd','art540.dtd']
tmp_extracted = 0
for art in arts:
| python | {
"resource": ""
} |
q263198 | ElsevierPackage.get_publication_date | validation | def get_publication_date(self, xml_doc):
"""Return the best effort start_date."""
start_date = get_value_in_tag(xml_doc, "prism:coverDate")
if not start_date:
start_date = get_value_in_tag(xml_doc, "prism:coverDisplayDate")
if not start_date:
start_date = get_value_in_tag(xml_doc, 'oa:openAccessEffective')
if start_date:
start_date = datetime.datetime.strptime(
start_date, "%Y-%m-%dT%H:%M:%SZ"
)
return start_date.strftime("%Y-%m-%d")
import dateutil.parser
#dateutil.parser.parse cant process dates like April-June 2016
start_date = re.sub('([A-Z][a-z]+)[\s\-][A-Z][a-z]+ (\d{4})',
r'\1 \2', start_date)
try:
date = dateutil.parser.parse(start_date)
except ValueError:
return ''
# Special case where we | python | {
"resource": ""
} |
q263199 | extract_oembeds | validation | def extract_oembeds(text, args=None):
"""
Extract oembed resources from a block of text. Returns a list
of dictionaries.
Max width & height can be specified:
{% for embed in block_of_text|extract_oembeds:"400x300" %}
Resource type can be specified:
{% for photo_embed in block_of_text|extract_oembeds:"photo" %}
Or both:
{% for embed in block_of_text|extract_oembeds:"400x300xphoto" %}
"""
resource_type = width = height = None
| python | {
"resource": ""
} |
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