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q264500
BaseBackend.get_formatted_messages
validation
def get_formatted_messages(self, formats, label, context): """ Returns a dictionary with the format identifier as the key. The values are are fully rendered templates with the given context. """ format_templates = {} for fmt in formats: # conditionally turn off autoescaping for .txt extensions in format if fmt.endswith(".txt"): context.autoescape = False
python
{ "resource": "" }
q264501
copy_attributes
validation
def copy_attributes(source, destination, ignore_patterns=[]): """ Copy the attributes from a source object to
python
{ "resource": "" }
q264502
DataFrameColumnSet.row
validation
def row(self, idx): """ Returns DataFrameRow of the DataFrame given its index. :param idx: the index of the row in the DataFrame. :return: returns
python
{ "resource": "" }
q264503
notice_settings
validation
def notice_settings(request): """ The notice settings view. Template: :template:`notification/notice_settings.html` Context: notice_types A list of all :model:`notification.NoticeType` objects. notice_settings A dictionary containing ``column_headers`` for each ``NOTICE_MEDIA`` and ``rows`` containing a list of dictionaries: ``notice_type``, a :model:`notification.NoticeType` object and ``cells``, a list of tuples whose first value is suitable for use in forms and the second value is ``True`` or ``False`` depending on a ``request.POST`` variable called ``form_label``, whose valid value is ``on``. """ notice_types = NoticeType.objects.all() settings_table = [] for notice_type in notice_types: settings_row = []
python
{ "resource": "" }
q264504
Tungsten.query
validation
def query(self, input = '', params = {}): """Query Wolfram Alpha and return a Result object""" # Get and construct query parameters # Default parameters payload = {'input': input, 'appid': self.appid} # Additional parameters (from params), formatted for url for key, value in params.items(): # Check if value is list or tuple type (needs to be comma joined) if isinstance(value, (list, tuple)): payload[key] = ','.join(value) else: payload[key] = value # Catch any issues with connecting to Wolfram Alpha API
python
{ "resource": "" }
q264505
Result.pods
validation
def pods(self): """Return list of all Pod objects in result""" # Return empty list if xml_tree is not defined (error Result object) if not self.xml_tree: return []
python
{ "resource": "" }
q264506
SearchTree.find
validation
def find(self, *args): """ Find a node in the tree. If the node is not found it is added first and then returned.
python
{ "resource": "" }
q264507
get_notification_language
validation
def get_notification_language(user): """ Returns site-specific notification language for this user. Raises LanguageStoreNotAvailable if this site does not use translated notifications. """ if getattr(settings, "NOTIFICATION_LANGUAGE_MODULE", False): try: app_label, model_name = settings.NOTIFICATION_LANGUAGE_MODULE.split(".") model = models.get_model(app_label, model_name) # pylint: disable-msg=W0212
python
{ "resource": "" }
q264508
send_now
validation
def send_now(users, label, extra_context=None, sender=None): """ Creates a new notice. This is intended to be how other apps create new notices. notification.send(user, "friends_invite_sent", { "spam": "eggs", "foo": "bar", ) """ sent = False if extra_context is None: extra_context = {} notice_type = NoticeType.objects.get(label=label) current_language = get_language() for user in users: # get user language for user from language store defined in # NOTIFICATION_LANGUAGE_MODULE setting try: language = get_notification_language(user) except LanguageStoreNotAvailable:
python
{ "resource": "" }
q264509
send
validation
def send(*args, **kwargs): """ A basic interface around both queue and send_now. This honors a global flag NOTIFICATION_QUEUE_ALL that helps determine whether all calls should be queued or not. A per call ``queue`` or ``now`` keyword argument can be used to always override the default global behavior. """ queue_flag = kwargs.pop("queue", False) now_flag = kwargs.pop("now", False) assert not (queue_flag and now_flag), "'queue' and 'now' cannot
python
{ "resource": "" }
q264510
queue
validation
def queue(users, label, extra_context=None, sender=None): """ Queue the notification in NoticeQueueBatch. This allows for large amounts of user notifications to be deferred to a seperate process running outside the webserver. """ if extra_context is None: extra_context = {} if isinstance(users, QuerySet): users = [row["pk"] for row in users.values("pk")]
python
{ "resource": "" }
q264511
write_table_pair_potential
validation
def write_table_pair_potential(func, dfunc=None, bounds=(1.0, 10.0), samples=1000, tollerance=1e-6, keyword='PAIR'): """A helper function to write lammps pair potentials to string. Assumes that functions are vectorized. Parameters ---------- func: function A function that will be evaluated for the force at each radius. Required to be numpy vectorizable. dfunc: function Optional. A function that will be evaluated for the energy at each radius. If not supplied the centered difference method will be used. Required to be numpy vectorizable. bounds: tuple, list Optional. specifies min and max radius to evaluate the potential. Default 1 length unit, 10 length unit.
python
{ "resource": "" }
q264512
write_tersoff_potential
validation
def write_tersoff_potential(parameters): """Write tersoff potential file from parameters to string Parameters ---------- parameters: dict keys are tuple of elements with the values being the parameters length 14 """ lines = [] for (e1, e2, e3), params in parameters.items(): if len(params)
python
{ "resource": "" }
q264513
GroupedDataFrame.aggregate
validation
def aggregate(self, clazz, new_col, *args): """ Aggregate the rows of each group into a single value. :param clazz: name of a class that extends class Callable :type clazz: class :param new_col: name of the new column :type new_col: str :param args: list of column names of the object that function should be applied to :type args: varargs :return: returns a new dataframe object with the aggregated value :rtype: DataFrame """ if is_callable(clazz) \
python
{ "resource": "" }
q264514
is_disjoint
validation
def is_disjoint(set1, set2, warn): """ Checks if elements of set2 are in set1. :param set1: a set of values :param set2: a set of values :param warn: the error message that should be thrown when the sets are NOT
python
{ "resource": "" }
q264515
contains_all
validation
def contains_all(set1, set2, warn): """ Checks if all elements from set2 are in set1. :param set1: a set of values :param set2: a set of values :param warn: the error message that should be thrown when the sets are
python
{ "resource": "" }
q264516
MARCXMLSerializer.to_XML
validation
def to_XML(self): """ Serialize object back to XML string. Returns: str: String which should be same as original input, if everything\ works as expected. """ marcxml_template = """<record xmlns="http://www.loc.gov/MARC21/slim/" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.loc.gov/MARC21/slim http://www.loc.gov/standards/marcxml/schema/MARC21slim.xsd"> $LEADER $CONTROL_FIELDS $DATA_FIELDS </record> """ oai_template = """<record> <metadata> <oai_marc> $LEADER$CONTROL_FIELDS $DATA_FIELDS </oai_marc> </metadata> </record> """ # serialize leader, if it is present and record is marc xml leader = self.leader if self.leader is not None else "" if leader: # print only visible leaders
python
{ "resource": "" }
q264517
MARCXMLParser._parse_string
validation
def _parse_string(self, xml): """ Parse MARC XML document to dicts, which are contained in self.controlfields and self.datafields. Args: xml (str or HTMLElement): input data Also detect if this is oai marc format or not (see elf.oai_marc). """ if not isinstance(xml, HTMLElement): xml = dhtmlparser.parseString(str(xml)) # check if there are any records record = xml.find("record") if not record: raise ValueError("There is no <record> in your MARC XML document!")
python
{ "resource": "" }
q264518
MARCXMLParser._parse_control_fields
validation
def _parse_control_fields(self, fields, tag_id="tag"): """ Parse control fields. Args: fields (list): list of HTMLElements tag_id (str): parameter name, which holds the information, about field name this is normally "tag", but in case of oai_marc "id". """
python
{ "resource": "" }
q264519
MARCXMLParser._parse_data_fields
validation
def _parse_data_fields(self, fields, tag_id="tag", sub_id="code"): """ Parse data fields. Args: fields (list): of HTMLElements tag_id (str): parameter name, which holds the information, about field name this is normally "tag", but in case of oai_marc "id" sub_id (str): id of parameter, which holds informations about subfield name this is normally "code" but in case of oai_marc "label" """ for field in fields: params = field.params if tag_id not in params: continue # take care of iX/indX (indicator) parameters field_repr = OrderedDict([ [self.i1_name, params.get(self.i1_name, " ")], [self.i2_name, params.get(self.i2_name, " ")], ]) # process all subfields for subfield in field.find("subfield"): if sub_id not in subfield.params: continue
python
{ "resource": "" }
q264520
MARCXMLParser.get_i_name
validation
def get_i_name(self, num, is_oai=None): """ This method is used mainly internally, but it can be handy if you work with with raw MARC XML object and not using getters. Args: num (int): Which indicator you need (1/2). is_oai (bool/None): If None, :attr:`.oai_marc` is used. Returns: str: current name of ``i1``/``ind1`` parameter based on \ :attr:`oai_marc`
python
{ "resource": "" }
q264521
MARCXMLParser.get_subfields
validation
def get_subfields(self, datafield, subfield, i1=None, i2=None, exception=False): """ Return content of given `subfield` in `datafield`. Args: datafield (str): Section name (for example "001", "100", "700"). subfield (str): Subfield name (for example "a", "1", etc..). i1 (str, default None): Optional i1/ind1 parameter value, which will be used for search. i2 (str, default None): Optional i2/ind2 parameter value, which will be used for search. exception (bool): If ``True``, :exc:`~exceptions.KeyError` is raised when method couldn't found given `datafield` / `subfield`. If ``False``, blank array ``[]`` is returned. Returns: list: of :class:`.MARCSubrecord`. Raises: KeyError: If the subfield or datafield couldn't be found. Note: MARCSubrecord is practically same thing as string, but has defined
python
{ "resource": "" }
q264522
_get_params
validation
def _get_params(target, param, dof): '''Get the given param from each of the DOFs for
python
{ "resource": "" }
q264523
_set_params
validation
def _set_params(target, param, values, dof): '''Set the given param for each of the DOFs for a joint.''' if not isinstance(values, (list, tuple, np.ndarray)):
python
{ "resource": "" }
q264524
make_quaternion
validation
def make_quaternion(theta, *axis): '''Given an angle and an axis, create a quaternion.''' x, y, z =
python
{ "resource": "" }
q264525
center_of_mass
validation
def center_of_mass(bodies): '''Given a set of bodies, compute their center of mass in world coordinates. ''' x = np.zeros(3.) t = 0. for b in bodies: m
python
{ "resource": "" }
q264526
Body.state
validation
def state(self, state): '''Set the state of this body. Parameters ---------- state : BodyState tuple The desired state of the body. ''' assert self.name == state.name, \ 'state name "{}" != body name "{}"'.format(state.name, self.name) self.position = state.position
python
{ "resource": "" }
q264527
Body.rotation
validation
def rotation(self, rotation): '''Set the rotation of this body using a rotation matrix. Parameters ---------- rotation : sequence of 9 floats The desired rotation matrix for this body. '''
python
{ "resource": "" }
q264528
Body.body_to_world
validation
def body_to_world(self, position): '''Convert a body-relative offset to world coordinates. Parameters ---------- position : 3-tuple of float A tuple giving body-relative offsets. Returns -------
python
{ "resource": "" }
q264529
Body.world_to_body
validation
def world_to_body(self, position): '''Convert a point in world coordinates to a body-relative offset. Parameters ---------- position : 3-tuple of float A world coordinates position. Returns -------
python
{ "resource": "" }
q264530
Body.relative_offset_to_world
validation
def relative_offset_to_world(self, offset): '''Convert a relative body offset to world coordinates. Parameters ---------- offset : 3-tuple of float The offset of the desired point, given as a relative fraction of the size of this body. For example, offset (0, 0, 0) is the center of the body, while (0.5, -0.2, 0.1) describes a point halfway from the center towards the maximum x-extent of the body, 20% of the way from the center towards the minimum y-extent, and 10% of the way from the
python
{ "resource": "" }
q264531
Body.add_force
validation
def add_force(self, force, relative=False, position=None, relative_position=None): '''Add a force to this body. Parameters ---------- force : 3-tuple of float A vector giving the forces along each world or body coordinate axis. relative : bool, optional If False, the force values are assumed to be given in the world coordinate frame. If True, they are assumed to be given in the body-relative coordinate frame. Defaults to False. position : 3-tuple of float, optional If given, apply the force at this location in world coordinates. Defaults to the current position of the body. relative_position : 3-tuple of float, optional
python
{ "resource": "" }
q264532
Body.add_torque
validation
def add_torque(self, torque, relative=False): '''Add a torque to this body. Parameters ---------- force : 3-tuple of float A vector giving the torque along each world or body coordinate axis. relative : bool, optional If False, the torque values are assumed to be given in the world
python
{ "resource": "" }
q264533
Body.join_to
validation
def join_to(self, joint, other_body=None, **kwargs): '''Connect this body to another one using a joint. This method creates a joint to fasten this body to the other one. See :func:`World.join`. Parameters
python
{ "resource": "" }
q264534
Body.connect_to
validation
def connect_to(self, joint, other_body, offset=(0, 0, 0), other_offset=(0, 0, 0), **kwargs): '''Move another body next to this one and join them together. This method will move the ``other_body`` so that the anchor points for the joint coincide. It then creates a joint to fasten the two bodies together. See :func:`World.move_next_to` and :func:`World.join`. Parameters ---------- joint : str The type of joint to use when connecting these bodies. other_body : :class:`Body` or str The other body to join with this one. offset : 3-tuple of float, optional The body-relative offset where the anchor for the joint should be
python
{ "resource": "" }
q264535
Joint.positions
validation
def positions(self): '''List of positions for linear degrees of freedom.'''
python
{ "resource": "" }
q264536
Joint.position_rates
validation
def position_rates(self): '''List of position rates for linear degrees of freedom.'''
python
{ "resource": "" }
q264537
Joint.angles
validation
def angles(self): '''List of angles for rotational degrees of freedom.'''
python
{ "resource": "" }
q264538
Joint.angle_rates
validation
def angle_rates(self): '''List of angle rates for rotational degrees of freedom.'''
python
{ "resource": "" }
q264539
Joint.axes
validation
def axes(self): '''List of axes for this object's degrees of freedom.''' return
python
{ "resource": "" }
q264540
Joint.lo_stops
validation
def lo_stops(self, lo_stops): '''Set the lo stop values for this object's degrees of freedom. Parameters ---------- lo_stops : float or sequence of float A lo stop value to set on all degrees of freedom, or a list containing one such value for each degree of freedom.
python
{ "resource": "" }
q264541
Joint.hi_stops
validation
def hi_stops(self, hi_stops): '''Set the hi stop values for this object's degrees of freedom. Parameters ---------- hi_stops : float or sequence of float A hi stop value to set on all degrees of freedom, or a list containing one such value for each degree of freedom.
python
{ "resource": "" }
q264542
Joint.velocities
validation
def velocities(self, velocities): '''Set the target velocities for this object's degrees of freedom. Parameters ---------- velocities : float or sequence of float A target velocity value to set on all degrees of freedom, or a list containing one such value for each degree of freedom. For
python
{ "resource": "" }
q264543
Joint.max_forces
validation
def max_forces(self, max_forces): '''Set the maximum forces for this object's degrees of freedom. Parameters ---------- max_forces : float or sequence of float A maximum force value to set on all degrees of freedom, or a list
python
{ "resource": "" }
q264544
Joint.erps
validation
def erps(self, erps): '''Set the ERP values for this object's degrees of freedom. Parameters ---------- erps : float or sequence of float An ERP value to set on all degrees of freedom, or a list
python
{ "resource": "" }
q264545
Joint.cfms
validation
def cfms(self, cfms): '''Set the CFM values for this object's degrees of freedom. Parameters ---------- cfms : float or sequence of float A CFM value to set on all degrees of freedom, or a list
python
{ "resource": "" }
q264546
Joint.stop_cfms
validation
def stop_cfms(self, stop_cfms): '''Set the CFM values for this object's DOF limits. Parameters ---------- stop_cfms : float or sequence of float A CFM value to set on all degrees of freedom limits, or a list
python
{ "resource": "" }
q264547
Joint.stop_erps
validation
def stop_erps(self, stop_erps): '''Set the ERP values for this object's DOF limits. Parameters ---------- stop_erps : float or sequence of float An ERP value to set on all degrees of freedom limits, or a list
python
{ "resource": "" }
q264548
Slider.axes
validation
def axes(self, axes): '''Set the linear axis of displacement for this joint. Parameters ---------- axes : list containing one 3-tuple of floats A list of the axes for this joint. For a slider joint, which has one degree of freedom, this must contain one 3-tuple specifying
python
{ "resource": "" }
q264549
Hinge.axes
validation
def axes(self, axes): '''Set the angular axis of rotation for this joint. Parameters ---------- axes : list containing one 3-tuple of floats A list of
python
{ "resource": "" }
q264550
Universal.axes
validation
def axes(self): '''A list of axes of rotation for this joint.''' return
python
{ "resource": "" }
q264551
World.create_body
validation
def create_body(self, shape, name=None, **kwargs): '''Create a new body. Parameters ---------- shape : str The "shape" of the body to be created. This should name a type of body object, e.g., "box" or "cap". name : str, optional The name to use for this body. If not given, a default name will be constructed of the form "{shape}{# of objects in the world}". Returns ------- body : :class:`Body` The created body object.
python
{ "resource": "" }
q264552
World.join
validation
def join(self, shape, body_a, body_b=None, name=None, **kwargs): '''Create a new joint that connects two bodies together. Parameters ---------- shape : str The "shape" of the joint to use for joining together two bodies. This should name a type of joint, such as "ball" or "piston". body_a : str or :class:`Body` The first body to join together with this joint. If a string is given, it will be used as the name of a body to look up in the world. body_b : str or :class:`Body`, optional
python
{ "resource": "" }
q264553
World.move_next_to
validation
def move_next_to(self, body_a, body_b, offset_a, offset_b): '''Move one body to be near another one. After moving, the location described by ``offset_a`` on ``body_a`` will be coincident with the location described by ``offset_b`` on ``body_b``. Parameters ---------- body_a : str or :class:`Body` The body to use as a reference for moving the other body. If this is a string, it is treated as the name of a body to look up in the world. body_b : str or :class:`Body` The body to move next to ``body_a``. If this is a string, it is treated as the name of a body to look up in the world. offset_a : 3-tuple of float The offset of the anchor point, given as a relative fraction of the size of ``body_a``. See :func:`Body.relative_offset_to_world`. offset_b : 3-tuple of float The offset of the anchor point, given as a relative fraction of the size of ``body_b``. Returns -------
python
{ "resource": "" }
q264554
World.set_body_states
validation
def set_body_states(self, states): '''Set the states of some bodies in the world. Parameters ---------- states : sequence of states A complete state tuple for one or more bodies in the world. See
python
{ "resource": "" }
q264555
World.step
validation
def step(self, substeps=2): '''Step the world forward by one frame. Parameters ---------- substeps : int, optional Split the step into this many sub-steps. This helps to prevent the
python
{ "resource": "" }
q264556
World.are_connected
validation
def are_connected(self, body_a, body_b): '''Determine whether the given bodies are currently connected. Parameters ---------- body_a : str or :class:`Body` One body to test for connectedness. If this is a string, it is treated as the name of a body to look up. body_b : str or :class:`Body` One body to test for connectedness. If this is a string, it is treated as the name of a body to look up.
python
{ "resource": "" }
q264557
parse_amc
validation
def parse_amc(source): '''Parse an AMC motion capture data file. Parameters ---------- source : file A file-like object that contains AMC motion capture text. Yields ------ frame : dict Yields a series of motion capture frames. Each frame is a dictionary that maps a bone name to a list of the DOF configurations for that bone. ''' lines = 0 frames = 1 frame = {} degrees = False for line in source:
python
{ "resource": "" }
q264558
AsfVisitor.create_bodies
validation
def create_bodies(self, translate=(0, 1, 0), size=0.1): '''Traverse the bone hierarchy and create physics bodies.''' stack = [('root', 0, self.root['position'] + translate)] while stack: name, depth, end = stack.pop() for child in self.hierarchy.get(name, ()): stack.append((child, depth + 1, end + self.bones[child].end)) if name not in self.bones: continue bone = self.bones[name] body = self.world.create_body( 'box', name=bone.name, density=self.density, lengths=(size, size, bone.length)) body.color = self.color # move the center of the body to the halfway point between # the parent (joint) and child (joint). x, y, z = end - bone.direction * bone.length / 2 # swizzle y and z -- asf uses y as up, but we use z as up. body.position = x,
python
{ "resource": "" }
q264559
AsfVisitor.create_joints
validation
def create_joints(self): '''Traverse the bone hierarchy and create physics joints.''' stack = ['root'] while stack: parent = stack.pop() for child in self.hierarchy.get(parent, ()): stack.append(child) if parent not in self.bones: continue bone = self.bones[parent] body = [b for b in self.bodies if b.name == parent][0] for child in self.hierarchy.get(parent, ()):
python
{ "resource": "" }
q264560
MARCXMLQuery._parse_corporations
validation
def _parse_corporations(self, datafield, subfield, roles=["any"]): """ Parse informations about corporations from given field identified by `datafield` parameter. Args: datafield (str): MARC field ID ("``110``", "``610``", etc..) subfield (str): MARC subfield ID with name, which is typically stored in "``a``" subfield. roles (str): specify which roles you need. Set to ``["any"]`` for any role, ``["dst"]`` for distributors, etc.. For details, see http://www.loc.gov/marc/relators/relaterm.html Returns: list: :class:`Corporation` objects. """ if len(datafield) != 3: raise ValueError( "datafield parameter have to be exactly 3 chars long!" ) if len(subfield) != 1: raise ValueError( "Bad subfield specification - subield have to be 3 chars long!" ) parsed_corporations = [] for corporation in self.get_subfields(datafield, subfield): other_subfields = corporation.other_subfields # check
python
{ "resource": "" }
q264561
MARCXMLQuery._parse_persons
validation
def _parse_persons(self, datafield, subfield, roles=["aut"]): """ Parse persons from given datafield. Args: datafield (str): code of datafield ("010", "730", etc..) subfield (char): code of subfield ("a", "z", "4", etc..) role (list of str): set to ["any"] for any role, ["aut"] for authors, etc.. For details see http://www.loc.gov/marc/relators/relaterm.html Main records for persons are: "100", "600" and "700", subrecords "c". Returns: list: Person objects. """ # parse authors parsed_persons = [] raw_persons = self.get_subfields(datafield, subfield) for person in raw_persons: # check if person have at least one of the roles specified in # 'roles' parameter of function other_subfields = person.other_subfields if "4" in other_subfields and roles != ["any"]: person_roles = other_subfields["4"] # list of role parameters relevant = any(map(lambda role: role in roles, person_roles)) # skip non-relevant persons if not relevant: continue # result of .strip() is string, so ind1/2 in MARCSubrecord are lost ind1 = person.i1 ind2 = person.i2 person = person.strip() name = "" second_name = "" surname = "" title = "" # here it gets nasty - there is lot of options in ind1/ind2 # parameters if ind1 == "1" and ind2 == " ": if "," in person:
python
{ "resource": "" }
q264562
MARCXMLQuery.get_ISBNs
validation
def get_ISBNs(self): """ Get list of VALID ISBN. Returns: list: List with *valid* ISBN strings. """ invalid_isbns = set(self.get_invalid_ISBNs()) valid_isbns = [
python
{ "resource": "" }
q264563
MARCXMLQuery.get_urls
validation
def get_urls(self): """ Content of field ``856u42``. Typically URL pointing to producers homepage. Returns: list: List of URLs defined by producer. """
python
{ "resource": "" }
q264564
MARCXMLQuery.get_internal_urls
validation
def get_internal_urls(self): """ URL's, which may point to edeposit, aleph, kramerius and so on. Fields ``856u40``, ``998a`` and ``URLu``. Returns: list: List of internal URLs. """ internal_urls = self.get_subfields("856", "u", i1="4", i2="0")
python
{ "resource": "" }
q264565
pid
validation
def pid(kp=0., ki=0., kd=0., smooth=0.1): r'''Create a callable that implements a PID controller. A PID controller returns a control signal :math:`u(t)` given a history of error measurements :math:`e(0) \dots e(t)`, using proportional (P), integral (I), and derivative (D) terms, according to: .. math:: u(t) = kp * e(t) + ki * \int_{s=0}^t e(s) ds + kd * \frac{de(s)}{ds}(t) The proportional term is just the current error, the integral term is the sum of all error measurements, and the derivative term is the instantaneous derivative of the error measurement. Parameters ---------- kp : float The weight associated with the proportional term of the PID controller. ki : float The weight associated with the integral term of the PID controller. kd : float The weight associated with the derivative term of the PID controller. smooth : float in [0, 1] Derivative values will be smoothed with this exponential average. A value of 1 never incorporates new derivative information, a value of 0.5 uses the mean of the historic and new information, and a value of 0 discards historic information (i.e., the derivative in this case will be
python
{ "resource": "" }
q264566
as_flat_array
validation
def as_flat_array(iterables): '''Given a sequence of sequences, return a flat numpy array. Parameters ---------- iterables : sequence of sequence of number A sequence of tuples or lists containing numbers. Typically these come from something that represents each joint in a skeleton, like angle. Returns -------
python
{ "resource": "" }
q264567
Skeleton.load
validation
def load(self, source, **kwargs): '''Load a skeleton definition from a file. Parameters ---------- source : str or file A filename or file-like object that contains text information describing a skeleton. See :class:`pagoda.parser.Parser` for more information about the format of
python
{ "resource": "" }
q264568
Skeleton.load_skel
validation
def load_skel(self, source, **kwargs): '''Load a skeleton definition from a text file. Parameters ---------- source : str or file A filename or file-like object that contains text information describing a skeleton. See :class:`pagoda.parser.BodyParser` for more information about the format
python
{ "resource": "" }
q264569
Skeleton.load_asf
validation
def load_asf(self, source, **kwargs): '''Load a skeleton definition from an ASF text file. Parameters ---------- source : str or file A filename or file-like object that contains text information describing a skeleton, in ASF format.
python
{ "resource": "" }
q264570
Skeleton.set_pid_params
validation
def set_pid_params(self, *args, **kwargs): '''Set PID parameters for all joints in the skeleton. Parameters for this method are passed directly to the `pid` constructor. ''' for joint in self.joints:
python
{ "resource": "" }
q264571
Skeleton.joint_torques
validation
def joint_torques(self): '''Get a list of all current joint torques in the skeleton.''' return
python
{ "resource": "" }
q264572
Skeleton.indices_for_joint
validation
def indices_for_joint(self, name): '''Get a list of the indices for a specific joint. Parameters ---------- name : str The name of the joint to look up. Returns ------- list of int :
python
{ "resource": "" }
q264573
Skeleton.indices_for_body
validation
def indices_for_body(self, name, step=3): '''Get a list of the indices for a specific body. Parameters ---------- name : str The name of the body to look up. step : int, optional The number of numbers for each body. Defaults to 3, should be set to 4 for body rotation (since quaternions have 4 values). Returns ------- list of int : A
python
{ "resource": "" }
q264574
Skeleton.joint_distances
validation
def joint_distances(self): '''Get the current joint separations for the skeleton. Returns ------- distances : list of float A list expressing the distance between the two joint anchor points, for each joint in the skeleton. These quantities describe how "exploded"
python
{ "resource": "" }
q264575
Skeleton.enable_motors
validation
def enable_motors(self, max_force): '''Enable the joint motors in this skeleton. This method sets the maximum force that can be applied by each joint to attain the desired target velocities. It also enables torque feedback for all joint motors. Parameters ---------- max_force : float The maximum force that each joint is allowed to apply to attain its target velocity. '''
python
{ "resource": "" }
q264576
Skeleton.set_target_angles
validation
def set_target_angles(self, angles): '''Move each joint toward a target angle. This method uses a PID controller to set a target angular velocity for each degree of freedom in the skeleton, based on the difference between the current and the target angle for the respective DOF. PID parameters are by default set to achieve a tiny bit less than complete convergence in one time step, using only the P term (i.e., the P coefficient is set to 1 - \delta, while I and D coefficients are set to 0). PID parameters can be updated by calling the `set_pid_params` method. Parameters
python
{ "resource": "" }
q264577
Skeleton.add_torques
validation
def add_torques(self, torques): '''Add torques for each degree of freedom in the skeleton. Parameters ---------- torques : list of float A list of the torques to add to each degree of freedom in the skeleton. '''
python
{ "resource": "" }
q264578
Markers.labels
validation
def labels(self): '''Return the names of our marker labels in canonical order.'''
python
{ "resource": "" }
q264579
Markers.load_csv
validation
def load_csv(self, filename, start_frame=10, max_frames=int(1e300)): '''Load marker data from a CSV file. The file will be imported using Pandas, which must be installed to use this method. (``pip install pandas``) The first line of the CSV file will be used for header information. The "time" column will be used as the index for the data frame. There must be columns named 'markerAB-foo-x','markerAB-foo-y','markerAB-foo-z', and 'markerAB-foo-c' for marker 'foo' to be included in the model. Parameters ---------- filename : str Name of the CSV file to load. ''' import pandas as pd compression = None if filename.endswith('.gz'): compression = 'gzip' df = pd.read_csv(filename, compression=compression).set_index('time').fillna(-1) # make sure the data frame's time index matches our world. assert self.world.dt == pd.Series(df.index).diff().mean() markers = [] for c in df.columns: m = re.match(r'^marker\d\d-(.*)-c$', c)
python
{ "resource": "" }
q264580
Markers.load_c3d
validation
def load_c3d(self, filename, start_frame=0, max_frames=int(1e300)): '''Load marker data from a C3D file. The file will be imported using the c3d module, which must be installed to use this method. (``pip install c3d``) Parameters ---------- filename : str Name of the C3D file to load. start_frame : int, optional Discard the first N frames. Defaults to 0. max_frames : int, optional Maximum number of frames to load. Defaults to loading all frames. ''' import c3d with open(filename, 'rb') as handle: reader = c3d.Reader(handle) logging.info('world frame rate %s, marker frame rate %s', 1 / self.world.dt, reader.point_rate) # set up a map from marker label to index in the data stream. self.channels = self._map_labels_to_channels([ s.strip() for s in reader.point_labels]) # read the actual c3d data into a numpy array. data = []
python
{ "resource": "" }
q264581
Markers.process_data
validation
def process_data(self): '''Process data to produce velocity and dropout information.''' self.visibility = self.data[:, :, 3] self.positions = self.data[:, :, :3] self.velocities = np.zeros_like(self.positions) + 1000 for frame_no in range(1, len(self.data) - 1): prev = self.data[frame_no - 1] next = self.data[frame_no + 1] for c in range(self.num_markers): if -1 < prev[c,
python
{ "resource": "" }
q264582
Markers.create_bodies
validation
def create_bodies(self): '''Create physics bodies corresponding to each marker in our data.''' self.bodies = {} for label in self.channels:
python
{ "resource": "" }
q264583
Markers.load_attachments
validation
def load_attachments(self, source, skeleton): '''Load attachment configuration from the given text source. The attachment configuration file has a simple format. After discarding Unix-style comments (any part of a line that starts with the pound (#) character), each line in the file is then expected to have the following format:: marker-name body-name X Y Z The marker name must correspond to an existing "channel" in our marker data. The body name must correspond to a rigid body in the skeleton. The X, Y, and Z coordinates specify the body-relative offsets where the marker should be attached: 0 corresponds to the center of the body along the given axis, while -1 and 1 correspond to the minimal (maximal, respectively) extent of the body's bounding box along the corresponding dimension. Parameters ---------- source : str or file-like
python
{ "resource": "" }
q264584
Markers.attach
validation
def attach(self, frame_no): '''Attach marker bodies to the corresponding skeleton bodies. Attachments are only made for markers that are not in a dropout state in the given frame. Parameters ---------- frame_no : int The frame of data we will use for attaching marker bodies. ''' assert not self.joints for label, j in self.channels.items(): target = self.targets.get(label)
python
{ "resource": "" }
q264585
Markers.reposition
validation
def reposition(self, frame_no): '''Reposition markers to a specific frame of data. Parameters ---------- frame_no : int The frame of data where we should reposition marker bodies. Markers will be positioned in the appropriate places in world coordinates. In addition, linear velocities of the markers will be set according
python
{ "resource": "" }
q264586
Markers.distances
validation
def distances(self): '''Get a list of the distances between markers and their attachments. Returns ------- distances : ndarray of shape (num-markers, 3) Array of distances for each marker joint in our attachment setup. If a marker does not currently have an associated joint (e.g. because it is not currently visible) this will contain NaN for that row. ''' distances = [] for label in self.labels:
python
{ "resource": "" }
q264587
Markers.forces
validation
def forces(self, dx_tm1=None): '''Return an array of the forces exerted by marker springs. Notes ----- The forces exerted by the marker springs can be approximated by:: F = kp * dx where ``dx`` is the current array of marker distances. An even more accurate value is computed by approximating the velocity of the spring displacement:: F = kp * dx + kd * (dx - dx_tm1) / dt where ``dx_tm1`` is an array of distances from the previous time
python
{ "resource": "" }
q264588
World.load_skeleton
validation
def load_skeleton(self, filename, pid_params=None): '''Create and configure a skeleton in our model. Parameters ---------- filename : str The name of a file containing skeleton configuration data. pid_params : dict, optional If given, use this dictionary
python
{ "resource": "" }
q264589
World.load_markers
validation
def load_markers(self, filename, attachments, max_frames=1e100): '''Load marker data and attachment preferences into the model. Parameters ---------- filename : str The name of a file containing marker data. This currently needs to be either a .C3D or a .CSV file. CSV files must adhere to a fairly strict column naming convention; see :func:`Markers.load_csv` for more information. attachments : str The name of a text file specifying how markers are attached to skeleton bodies. max_frames : number, optional Only read in this many frames of marker data. By default, the entire data file is read into memory. Returns ------- markers : :class:`Markers` Returns a markers object containing loaded marker data as well as skeleton attachment configuration. '''
python
{ "resource": "" }
q264590
World.step
validation
def step(self, substeps=2): '''Advance the physics world by one step. Typically this is called as part of a :class:`pagoda.viewer.Viewer`, but it can also be called manually (or some other stepping mechanism entirely can be used). ''' # by
python
{ "resource": "" }
q264591
World.settle_to_markers
validation
def settle_to_markers(self, frame_no=0, max_distance=0.05, max_iters=300, states=None): '''Settle the skeleton to our marker data at a specific frame. Parameters ---------- frame_no : int, optional Settle the skeleton to marker data at this frame. Defaults to 0. max_distance : float, optional The settling process will stop when the mean marker distance falls below this threshold. Defaults to 0.1m (10cm). Setting this too small prevents the settling process from finishing (it will loop indefinitely), and setting it too large prevents the skeleton from settling to a stable state near the markers. max_iters : int, optional Attempt to settle markers for at most this many iterations. Defaults to 1000. states : list of body states, optional If given, set the bodies in our skeleton to these kinematic states before starting the settling process. ''' if states
python
{ "resource": "" }
q264592
World.follow_markers
validation
def follow_markers(self, start=0, end=1e100, states=None): '''Iterate over a set of marker data, dragging its skeleton along. Parameters ---------- start : int, optional Start following marker data after this frame. Defaults to 0. end : int, optional Stop following marker data after this frame. Defaults to the end of the marker data. states : list of body states, optional If given, set the states of the skeleton bodies to these values before starting to follow the marker
python
{ "resource": "" }
q264593
World._step_to_marker_frame
validation
def _step_to_marker_frame(self, frame_no, dt=None): '''Update the simulator to a specific frame of marker data. This method returns a generator of body states for the skeleton! This generator must be exhausted (e.g., by consuming this call in a for loop) for the simulator to work properly. This process involves the following steps: - Move the markers to their new location: - Detach from the skeleton - Update marker locations - Reattach to the skeleton - Detect ODE collisions - Yield the states of the bodies in the skeleton - Advance the ODE world one step Parameters ---------- frame_no : int Step to this frame of marker data. dt : float, optional Step with this time duration. Defaults to ``self.dt``. Returns ------- states : sequence of state tuples A generator of a sequence of one body state for the skeleton. This generator must be exhausted for the simulation to work properly. '''
python
{ "resource": "" }
q264594
World.inverse_kinematics
validation
def inverse_kinematics(self, start=0, end=1e100, states=None, max_force=20): '''Follow a set of marker data, yielding kinematic joint angles. Parameters ---------- start : int, optional Start following marker data after this frame. Defaults to 0. end : int, optional Stop following marker data after this frame. Defaults to the end of the marker data. states : list of body states, optional If given, set the states of the skeleton bodies to these values before starting to follow the marker data. max_force : float, optional Allow each degree of freedom in the skeleton to exert at most this force when attempting to maintain its equilibrium position. This defaults to 20N. Set this value higher to simulate a stiff skeleton while following marker data. Returns ------- angles : sequence of angle frames Returns a generator of joint angle data for the skeleton. One set
python
{ "resource": "" }
q264595
World.inverse_dynamics
validation
def inverse_dynamics(self, angles, start=0, end=1e100, states=None, max_force=100): '''Follow a set of angle data, yielding dynamic joint torques. Parameters ---------- angles : ndarray (num-frames x num-dofs) Follow angle data provided by this array of angle values. start : int, optional Start following angle data after this frame. Defaults to the start of the angle data. end : int, optional Stop following angle data after this frame. Defaults to the end of the angle data. states : list of body states, optional If given, set the states of the skeleton bodies to these values before starting to follow the marker data. max_force : float, optional Allow each degree of freedom in the skeleton to exert at most this force when attempting to follow the given joint angles. Defaults to 100N. Setting this value to be large results in more accurate following but can cause oscillations in the PID controllers, resulting in noisy torques. Returns ------- torques : sequence of torque frames Returns a generator of joint torque data for the skeleton. One set of joint torques will be generated for each frame of angle data between `start` and `end`. ''' if states is not None: self.skeleton.set_body_states(states) for frame_no, frame in enumerate(angles): if frame_no < start: continue if frame_no >= end: break self.ode_space.collide(None, self.on_collision) states = self.skeleton.get_body_states() self.skeleton.set_body_states(states) # joseph's
python
{ "resource": "" }
q264596
World.forward_dynamics
validation
def forward_dynamics(self, torques, start=0, states=None): '''Move the body according to a set of torque data.''' if states is not None: self.skeleton.set_body_states(states) for frame_no, torque in enumerate(torques): if frame_no < start: continue if frame_no >= end: break
python
{ "resource": "" }
q264597
resorted
validation
def resorted(values): """ Sort values, but put numbers after alphabetically sorted words. This function is here to make outputs diff-compatible with Aleph. Example:: >>> sorted(["b", "1", "a"]) ['1', 'a', 'b'] >>> resorted(["b", "1", "a"]) ['a', 'b', '1'] Args: values (iterable): any iterable object/list/tuple/whatever. Returns: list of sorted values, but with numbers after words """ if not values: return values values = sorted(values) # look for first word first_word = next(
python
{ "resource": "" }
q264598
Viewer.render
validation
def render(self, dt): '''Draw all bodies in the world.''' for frame in self._frozen: for body in frame: self.draw_body(body) for body in self.world.bodies: self.draw_body(body) if hasattr(self.world, 'markers'):
python
{ "resource": "" }
q264599
Room.get_stream
validation
def get_stream(self, error_callback=None, live=True): """ Get room stream to listen for messages. Kwargs: error_callback (func): Callback to call when an error occurred (parameters: exception) live (bool): If True, issue a live stream, otherwise an offline stream
python
{ "resource": "" }