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q175400
FysatHeader.readPIB
test
boolean readPIB(RandomAccessFile raf) throws IOException { this.firstHeader = new AwxFileFirstHeader(); int pos = 0; raf.seek(pos); // gini header process byte[] buf = new byte[FY_AWX_PIB_LEN]; int count = raf.read(buf); EndianByteBuffer byteBuffer; if (count == FY_AWX_PIB_LEN) { byteBuffer = new EndianByteBuffer(buf, this.firstHeader.byteOrder); this.firstHeader.fillHeader(byteBuffer); } else { return false; } if (!((this.firstHeader.fileName.endsWith(".AWX") || this.firstHeader.fileName.endsWith(".awx")) && this.firstHeader.firstHeaderLength == FY_AWX_PIB_LEN)) { return false; } // skip the fills of the first record // raf.seek(FY_AWX_PIB_LEN + this.firstHeader.fillSectionLength); buf = new byte[this.firstHeader.secondHeaderLength]; raf.readFully(buf); byteBuffer = new EndianByteBuffer(buf, this.firstHeader.byteOrder); switch (this.firstHeader.typeOfProduct) { case AwxFileFirstHeader.AWX_PRODUCT_TYPE_UNDEFINED: throw new UnsupportedDatasetException(); case AwxFileFirstHeader.AWX_PRODUCT_TYPE_GEOSAT_IMAGE: secondHeader = new AwxFileGeoSatelliteSecondHeader(); secondHeader.fillHeader(byteBuffer); break; case AwxFileFirstHeader.AWX_PRODUCT_TYPE_POLARSAT_IMAGE: throw new UnsupportedDatasetException(); case AwxFileFirstHeader.AWX_PRODUCT_TYPE_GRID: secondHeader = new AwxFileGridProductSecondHeader(); secondHeader.fillHeader(byteBuffer); break; case AwxFileFirstHeader.AWX_PRODUCT_TYPE_DISCREET: throw new UnsupportedDatasetException(); case AwxFileFirstHeader.AWX_PRODUCT_TYPE_GRAPH_ANALIYSIS: throw new UnsupportedDatasetException(); } return true; }
java
{ "resource": "" }
q175401
InvDatasetImpl.finish
test
public boolean finish() { boolean ok = true; java.util.Iterator iter; logger.debug("Now finish " + getName() + " id= " + getID()); authorityName = null; dataType = null; dataFormatType = null; defaultService = null; gc = null; tc = null; docs = new ArrayList<>(); metadata = new ArrayList<>(); properties = new ArrayList<>(); creators = new ArrayList<>(); contributors = new ArrayList<>(); dates = new ArrayList<>(); keywords = new ArrayList<>(); projects = new ArrayList<>(); publishers = new ArrayList<>(); variables = new ArrayList<>(); canonicalize(); // canonicalize thredds metadata transfer2PublicMetadata(tm, true); // add local metadata transfer2PublicMetadata(tmi, true); // add local inherited metadata transferInheritable2PublicMetadata((InvDatasetImpl) getParent()); // add inheritable metadata from parents // build the expanded access list access = new ArrayList<>(); // add access element if urlPath is specified if ((urlPath != null) && (getServiceDefault() != null)) { InvAccessImpl a = new InvAccessImpl(this, urlPath, getServiceDefault()); a.setSize(size); a.finish(); addExpandedAccess(a); } // add local access elements iter = accessLocal.iterator(); while (iter.hasNext()) { InvAccessImpl a = (InvAccessImpl) iter.next(); a.finish(); addExpandedAccess(a); } // recurse into child datasets. if (!(this instanceof InvCatalogRef)) { for (InvDataset invDataset : this.getDatasets()) { InvDatasetImpl curDs = (InvDatasetImpl) invDataset; ok &= curDs.finish(); } } return ok; }
java
{ "resource": "" }
q175402
InvDatasetImpl.transferInheritable2PublicMetadata
test
private void transferInheritable2PublicMetadata(InvDatasetImpl parent) { if (parent == null) return; logger.debug(" inheritFromParent= " + parent.getID()); transfer2PublicMetadata(parent.getLocalMetadataInheritable(), true); //transfer2PublicMetadata(parent.getCat6Metadata(), true); /* look through local metadata, find inherited InvMetadata elements ThreddsMetadata tmd = parent.getLocalMetadata(); Iterator iter = tmd.getMetadata().iterator(); while (iter.hasNext()) { InvMetadata meta = (InvMetadata) iter.next(); if (meta.isInherited()) { if (!meta.isThreddsMetadata()) { metadata.add(meta); } else { if (debugInherit) System.out.println(" inheritMetadata Element " + tmd.isInherited() + " " + meta.isInherited()); meta.finish(); // make sure XLink is read in. transfer2PublicMetadata(meta.getThreddsMetadata(), false); } } } */ // recurse transferInheritable2PublicMetadata((InvDatasetImpl) parent.getParent()); }
java
{ "resource": "" }
q175403
InvDatasetImpl.transferMetadata
test
public void transferMetadata(InvDatasetImpl fromDs, boolean copyInheritedMetadataFromParents) { if (fromDs == null) return; logger.debug(" transferMetadata= " + fromDs.getName()); if (this != fromDs) getLocalMetadata().add(fromDs.getLocalMetadata(), false); transferInheritableMetadata(fromDs, getLocalMetadataInheritable(), copyInheritedMetadataFromParents); setResourceControl(fromDs.getRestrictAccess()); }
java
{ "resource": "" }
q175404
InvDatasetImpl.transferInheritableMetadata
test
private void transferInheritableMetadata(InvDatasetImpl fromDs, ThreddsMetadata target, boolean copyInheritedMetadataFromParents) { if (fromDs == null) return; logger.debug(" transferInheritedMetadata= " + fromDs.getName()); target.add(fromDs.getLocalMetadataInheritable(), true); /* look through local metadata, find inherited InvMetadata elements ThreddsMetadata tmd = fromDs.getLocalMetadata(); Iterator iter = tmd.getMetadata().iterator(); while (iter.hasNext()) { InvMetadata meta = (InvMetadata) iter.next(); if (meta.isInherited()) { if (!meta.isThreddsMetadata()) { tmc.addMetadata( meta); } else { logger.debug(" transferInheritedMetadata "+meta.hashCode()+" = "+meta); meta.finish(); // LOOK ?? make sure XLink is read in. tmc.add( meta.getThreddsMetadata(), true); } } } */ // now do the same for the parents if (copyInheritedMetadataFromParents) transferInheritableMetadata((InvDatasetImpl) fromDs.getParent(), target, true); }
java
{ "resource": "" }
q175405
InvDatasetImpl.setContributors
test
public void setContributors(List<ThreddsMetadata.Contributor> a) { List<ThreddsMetadata.Contributor> dest = tm.getContributors(); for (ThreddsMetadata.Contributor item : a) { if (!dest.contains(item)) dest.add(item); } hashCode = 0; }
java
{ "resource": "" }
q175406
InvDatasetImpl.addDataset
test
public void addDataset(int index, InvDatasetImpl ds) { if (ds == null) return; ds.setParent(this); datasets.add(index, ds); hashCode = 0; }
java
{ "resource": "" }
q175407
InvDatasetImpl.removeDataset
test
public boolean removeDataset(InvDatasetImpl ds) { if (this.datasets.remove(ds)) { ds.setParent(null); InvCatalogImpl cat = (InvCatalogImpl) getParentCatalog(); if (cat != null) cat.removeDatasetByID(ds); return (true); } return (false); }
java
{ "resource": "" }
q175408
InvDatasetImpl.replaceDataset
test
public boolean replaceDataset(InvDatasetImpl remove, InvDatasetImpl add) { for (int i = 0; i < datasets.size(); i++) { InvDataset dataset = datasets.get(i); if (dataset.equals(remove)) { datasets.set(i, add); InvCatalogImpl cat = (InvCatalogImpl) getParentCatalog(); if (cat != null) { cat.removeDatasetByID(remove); cat.addDatasetByID(add); } return true; } } return false; }
java
{ "resource": "" }
q175409
InvDatasetImpl.addService
test
public void addService(InvService service) { // System.out.println("--add dataset service= "+service.getName()); servicesLocal.add(service); services.add(service); // add nested servers for (InvService nested : service.getServices()) { services.add(nested); // System.out.println("--add expanded service= "+nested.getName()); } hashCode = 0; }
java
{ "resource": "" }
q175410
InvDatasetImpl.removeService
test
public void removeService(InvService service) { servicesLocal.remove(service); services.remove(service); // remove nested servers for (InvService nested : service.getServices()) { services.remove(nested); } }
java
{ "resource": "" }
q175411
InvDatasetImpl.setServicesLocal
test
public void setServicesLocal(java.util.List<InvService> s) { this.services = new ArrayList<>(); this.servicesLocal = new ArrayList<>(); for (InvService elem : s) { addService(elem); } hashCode = 0; }
java
{ "resource": "" }
q175412
InvDatasetImpl.removeLocalMetadata
test
public boolean removeLocalMetadata(InvMetadata metadata) { InvDatasetImpl parentDataset = ((InvDatasetImpl) metadata.getParentDataset()); List localMdata = parentDataset.getLocalMetadata().getMetadata(); if (localMdata.contains(metadata)) { if (localMdata.remove(metadata)) { hashCode = 0; // Need to recalculate the hash code. return (true); } } return (false); }
java
{ "resource": "" }
q175413
InvDatasetImpl.getUserProperty
test
public Object getUserProperty(Object key) { if (userMap == null) return null; return userMap.get(key); }
java
{ "resource": "" }
q175414
DatasetNamer.validate
test
boolean validate(StringBuilder out) { this.isValid = true; // If log from construction has content, append to validation output msg. if (this.msgLog.length() > 0) { out.append(this.msgLog); } // Check that name is not null (it can be an empty string). if (this.getName() == null) { this.isValid = false; out.append(" ** DatasetNamer (1): null value for name is not valid."); } // Check that addLevel is not null. // boolean can't be null //if ( this.getAddLevel() == null) //{ // this.isValid = false; // out.append(" ** DatasetNamer (2): null value for addLevel is not valid."); //} // Check that type is not null. if (this.getType() == null) { this.isValid = false; out.append(" ** DatasetNamer (3): null value for type is not valid (set with bad string?)."); } if ( this.getType() == DatasetNamerType.REGULAR_EXPRESSION && ( this.getMatchPattern() == null || this.getSubstitutePattern() == null )) { this.isValid = false; out.append(" ** DatasetNamer (4): invalid datasetNamer <" + this.getName() + ">;" + " type is " + this.getType().toString() + ": matchPattern(" + this.getMatchPattern() + ") and substitutionPattern(" + this.getSubstitutePattern() + ") " + "must not be null."); } if ( this.getType() == DatasetNamerType.DODS_ATTRIBUTE && ( this.getAttribContainer() == null || this.getAttribName() == null ) ) { this.isValid = false; out.append(" ** DatasetNamer (5): invalid datasetNamer <" + this.getName() + ">;" + " type is " + this.getType().toString() + ": attriuteContainer(" + this.getAttribContainer() + ") and attributeName(" + this.getAttribName() + ") must not be null."); } return (this.isValid); }
java
{ "resource": "" }
q175415
BufrDataDescriptionSection.getDescriptors
test
public final List<String> getDescriptors() { List<String> desc = new ArrayList<String>(); for (short fxy : descriptors) desc.add(Descriptor.makeString(fxy)); return desc; }
java
{ "resource": "" }
q175416
WFSController.constructServerPath
test
public static String constructServerPath(HttpServletRequest hsreq) { return hsreq.getScheme() + "://" + hsreq.getServerName() + ":" + hsreq.getServerPort() + "/thredds/wfs/"; }
java
{ "resource": "" }
q175417
WFSController.getCapabilities
test
private void getCapabilities(PrintWriter out, HttpServletRequest hsreq, SimpleGeometryCSBuilder sgcs) { WFSGetCapabilitiesWriter gcdw = new WFSGetCapabilitiesWriter(out, WFSController.constructServerPath(hsreq)); gcdw.startXML(); gcdw.addOperation(WFSRequestType.GetCapabilities); gcdw.addOperation(WFSRequestType.DescribeFeatureType); gcdw.addOperation(WFSRequestType.GetFeature); gcdw.writeOperations(); List<String> seriesNames = sgcs.getGeometrySeriesNames(); for(String name : seriesNames) { gcdw.addFeature(new WFSFeature(TDSNAMESPACE + ":" + name, name)); } gcdw.writeFeatureTypes(); gcdw.finishXML(); }
java
{ "resource": "" }
q175418
WFSController.getFeature
test
private WFSExceptionWriter getFeature(PrintWriter out, HttpServletRequest hsreq, SimpleGeometryCSBuilder sgcs, String ftName, String fullFtName) { List<SimpleGeometry> geometryList = new ArrayList<SimpleGeometry>(); GeometryType geoT = sgcs.getGeometryType(ftName); if(geoT == null){ return new WFSExceptionWriter("Feature Type of " + fullFtName + " not found.", "GetFeature" , "OperationProcessingFailed"); } try { switch(geoT) { case POINT: Point pt = sgcs.getPoint(ftName, 0); int j = 0; while(pt != null) { geometryList.add(pt); j++; pt = sgcs.getPoint(ftName, j); } break; case LINE: Line line = sgcs.getLine(ftName, 0); int k = 0; while(line != null) { geometryList.add(line); k++; line = sgcs.getLine(ftName, k); } break; case POLYGON: Polygon poly = sgcs.getPolygon(ftName, 0); int i = 0; while(poly != null) { geometryList.add(poly); i++; poly = sgcs.getPolygon(ftName, i); } break; } } // Perhaps will change this to be implemented in the CFPolygon class catch(ArrayIndexOutOfBoundsException aout){ } WFSGetFeatureWriter gfdw = new WFSGetFeatureWriter(out, WFSController.constructServerPath(hsreq), WFSController.getXMLNamespaceXMLNSValue(hsreq), geometryList, ftName); gfdw.startXML(); gfdw.writeMembers(); gfdw.finishXML(); return null; }
java
{ "resource": "" }
q175419
WFSController.checkParametersForError
test
private WFSExceptionWriter checkParametersForError(String request, String version, String service, String typeName) { // The SERVICE parameter is required. If not specified, is an error (throw exception through XML). if(service != null) { // For the WFS servlet it must be WFS if not, write out an InvalidParameterValue exception. if(!service.equalsIgnoreCase("WFS")) { return new WFSExceptionWriter("WFS Server error. SERVICE parameter must be of value WFS.", "service", "InvalidParameterValue"); } } else { return new WFSExceptionWriter("WFS server error. SERVICE parameter is required.", "request", "MissingParameterValue"); } // The REQUEST Parameter is required. If not specified, is an error (throw exception through XML). if(request != null) { // Only go through version checks if NOT a Get Capabilities request, the VERSION parameter is required for all operations EXCEPT GetCapabilities section 7.6.25 of WFS 2.0 Interface Standard if(!request.equalsIgnoreCase(WFSRequestType.GetCapabilities.toString())) { if(version != null ) { // If the version is not failed report exception VersionNegotiationFailed, from OGC Web Services Common Standard section 7.4.1 // Get each part String[] versionParts = version.split("\\."); for(int ind = 0; ind < versionParts.length; ind++) { // Check if number will throw NumberFormatException if not. try { Integer.valueOf(versionParts[ind]); } /* Version parameters are only allowed to consist of numbers and periods. If this is not the case then * It qualifies for InvalidParameterException */ catch (NumberFormatException excep){ return new WFSExceptionWriter("WFS server error. VERSION parameter consists of invalid characters.", "version", "InvalidParameterValue"); } } /* Now the version parts are all constructed from the parameter * Analyze for correctness. */ boolean validVersion = false; // If just number 2 is specified, assume 2.0.0, pass the check if(versionParts.length == 1) if(versionParts[0].equals("2")) validVersion = true; // Two or more version parts specified, make sure it's 2.0.#.#... if(versionParts.length >= 2) if(versionParts[0].equals("2") && versionParts[1].equals("0")) validVersion = true; /* Another exception VersionNegotiationFailed is specified by OGC Web Services Common * for version mismatches. If the version check failed print this exception */ if(!validVersion){ return new WFSExceptionWriter("WFS Server error. Version requested is not supported.", null, "VersionNegotiationFailed"); } } else { return new WFSExceptionWriter("WFS server error. VERSION parameter is required.", "request", "MissingParameterValue"); } // Last check to see if typenames is specified, must be for GetFeature, DescribeFeatureType if(typeName == null) { return new WFSExceptionWriter("WFS server error. For the specifed request, parameter typename or typenames must be specified.", request, "MissingParameterValue"); } } WFSRequestType reqToProc = WFSRequestType.getWFSRequestType(request); if(reqToProc == null) return new WFSExceptionWriter("WFS server error. REQUEST parameter is not valid. Possible values: GetCapabilities, " + "DescribeFeatureType, GetFeature", "request", "InvalidParameterValue"); } else{ return new WFSExceptionWriter("WFS server error. REQUEST parameter is required.", "request", "MissingParameterValue"); } return null; }
java
{ "resource": "" }
q175420
WFSController.httpHandler
test
@RequestMapping("**") public void httpHandler(HttpServletRequest hsreq, HttpServletResponse hsres) { try { PrintWriter wr = hsres.getWriter(); List<String> paramNames = new LinkedList<String>(); Enumeration<String> paramNamesE = hsreq.getParameterNames(); while(paramNamesE.hasMoreElements()) paramNames.add(paramNamesE.nextElement()); // Prepare parameters String request = null; String version = null; String service = null; String typeNames = null; String datasetReqPath = null; String actualPath = null; String actualFTName = null; NetcdfDataset dataset = null; if(hsreq.getServletPath().length() > 4) { datasetReqPath = hsreq.getServletPath().substring(4, hsreq.getServletPath().length()); } actualPath = TdsRequestedDataset.getLocationFromRequestPath(datasetReqPath); if(actualPath != null) dataset = NetcdfDataset.openDataset(actualPath); else return; List<CoordinateSystem> csList = dataset.getCoordinateSystems(); SimpleGeometryCSBuilder cs = new SimpleGeometryCSBuilder(dataset, csList.get(0), null); /* Look for parameter names to assign values * in order to avoid casing issues with parameter names (such as a mismatch between reQUEST and request and REQUEST). */ for(String paramName : paramNames) { if(paramName.equalsIgnoreCase("REQUEST")) { request = hsreq.getParameter(paramName); } if(paramName.equalsIgnoreCase("VERSION")) { version = hsreq.getParameter(paramName); } if(paramName.equalsIgnoreCase("SERVICE")) { service = hsreq.getParameter(paramName); } if(paramName.equalsIgnoreCase("TYPENAMES") || paramName.equalsIgnoreCase("TYPENAME")) { typeNames = hsreq.getParameter(paramName); // Remove namespace header for getFeature if(typeNames != null) if(typeNames.length() > TDSNAMESPACE.length()) { actualFTName = typeNames.substring(TDSNAMESPACE.length() + 1, typeNames.length()); } } } WFSExceptionWriter paramError = checkParametersForError(request, version, service, typeNames); WFSExceptionWriter requestProcessingError = null; // If parameter checks all pass launch the request if(paramError == null) { WFSRequestType reqToProc = WFSRequestType.getWFSRequestType(request); switch(reqToProc) { case GetCapabilities: getCapabilities(wr, hsreq, cs); break; case DescribeFeatureType: describeFeatureType(wr, hsreq, actualFTName); break; case GetFeature: requestProcessingError = getFeature(wr, hsreq, cs, actualFTName, typeNames); break; } } // Parameter checks did not all pass, print the error and return else { paramError.write(hsres); return; } /* Specifically writes out exceptions that were incurred * while processing requests. */ if(requestProcessingError != null){ requestProcessingError.write(hsres); return; } } catch(IOException io) { throw new RuntimeException("The writer may not have been able to been have retrieved" + " or the requested dataset was not found", io); } }
java
{ "resource": "" }
q175421
HttpDSP.getCapabilities
test
public String getCapabilities(String url) throws IOException { // Save the original url String saveurl = this.xuri.getOriginal(); parseURL(url); String fdsurl = buildURL(this.xuri.assemble(XURI.URLALL), DSRSUFFIX, null, null); try { // Make the request and return an input stream for accessing the databuffer // Should fill in context bigendian and stream fields InputStream stream = callServer(fdsurl); // read the result, convert to string and return. byte[] bytes = DapUtil.readbinaryfile(stream); String document = new String(bytes, DapUtil.UTF8); return document; } finally { parseURL(saveurl); } }
java
{ "resource": "" }
q175422
CrawlableDatasetAmazonS3.length
test
@Override public long length() { // If the summary is already in the cache, return it. // It'll have been added by a listDatasets() call on the parent directory. S3ObjectSummary objectSummary = objectSummaryCache.getIfPresent(s3uri); if (objectSummary != null) { return objectSummary.getSize(); } /* Get the metadata directly from S3. This will be expensive. * We get punished hard if length() and/or lastModified() is called on a bunch of datasets without * listDatasets() first being called on their parent directory. * * So, is the right thing to do here "getParentDataset().listDatasets()" and then query the cache again? * Perhaps, but listDatasets() throws an IOException, and length() and lastModified() do not. * We would have to change their signatures and the upstream client code to make it work. */ ObjectMetadata metadata = threddsS3Client.getObjectMetadata(s3uri); if (metadata != null) { return metadata.getContentLength(); } else { // "this" may be a collection or non-existent. In both cases, we return 0. return 0; } }
java
{ "resource": "" }
q175423
CrawlableDatasetAmazonS3.lastModified
test
@Override public Date lastModified() { S3ObjectSummary objectSummary = objectSummaryCache.getIfPresent(s3uri); if (objectSummary != null) { return objectSummary.getLastModified(); } ObjectMetadata metadata = threddsS3Client.getObjectMetadata(s3uri); if (metadata != null) { return metadata.getLastModified(); } else { // "this" may be a collection or non-existent. In both cases, we return null. return null; } }
java
{ "resource": "" }
q175424
Generator.dataset
test
public void dataset(DapDataset dmr) throws DapException { // Iterate over the variables in order for(DapVariable var : this.dmr.getTopVariables()) { if(!this.ce.references(var)) continue; variable(var); } }
java
{ "resource": "" }
q175425
ServletUtil.returnFile
test
public static void returnFile(HttpServlet servlet, String contentPath, String path, HttpServletRequest req, HttpServletResponse res, String contentType) throws IOException { String filename = ServletUtil.formFilename(contentPath, path); log.debug("returnFile(): returning file <" + filename + ">."); // No file, nothing to view if (filename == null) { res.sendError(HttpServletResponse.SC_NOT_FOUND); return; } // dontallow .. if (filename.contains("..")) { res.sendError(HttpServletResponse.SC_FORBIDDEN); return; } // dont allow access to WEB-INF or META-INF String upper = filename.toUpperCase(); if (upper.contains("WEB-INF") || upper.contains("META-INF")) { res.sendError(HttpServletResponse.SC_FORBIDDEN); return; } returnFile(servlet, req, res, new File(filename), contentType); }
java
{ "resource": "" }
q175426
ServletUtil.returnString
test
public static void returnString(String contents, HttpServletResponse res) throws IOException { try { ServletOutputStream out = res.getOutputStream(); IO.copy(new ByteArrayInputStream(contents.getBytes(CDM.utf8Charset)), out); } catch (IOException e) { log.error(" IOException sending string: ", e); res.sendError(HttpServletResponse.SC_NOT_FOUND, "Problem sending string: " + e.getMessage()); } }
java
{ "resource": "" }
q175427
ServletUtil.setResponseContentLength
test
public static int setResponseContentLength(HttpServletResponse response, String s) throws UnsupportedEncodingException { int length = s.getBytes(response.getCharacterEncoding()).length; response.setContentLength(length); return length; }
java
{ "resource": "" }
q175428
ServletUtil.getRequestURI
test
public static URI getRequestURI(HttpServletRequest req) { try { return new URI(getRequestBase(req)); } catch (URISyntaxException e) { e.printStackTrace(); return null; } }
java
{ "resource": "" }
q175429
ServletUtil.getRequestPath
test
public static String getRequestPath(HttpServletRequest req) { StringBuilder buff = new StringBuilder(); if (req.getServletPath() != null) buff.append(req.getServletPath()); if (req.getPathInfo() != null) buff.append(req.getPathInfo()); return buff.toString(); }
java
{ "resource": "" }
q175430
ServletUtil.getRequest
test
public static String getRequest(HttpServletRequest req) { String query = req.getQueryString(); return getRequestBase(req) + (query == null ? "" : "?" + query); }
java
{ "resource": "" }
q175431
ServletUtil.getParameterIgnoreCase
test
public static String getParameterIgnoreCase(HttpServletRequest req, String paramName) { Enumeration e = req.getParameterNames(); while (e.hasMoreElements()) { String s = (String) e.nextElement(); if (s.equalsIgnoreCase(paramName)) return req.getParameter(s); } return null; }
java
{ "resource": "" }
q175432
CatalogChooser.save
test
public void save() { if (catListBox != null) catListBox.save(); if (prefs != null) { if (fileChooser != null) fileChooser.save(); if (catgenFileChooser != null) catgenFileChooser.save(); prefs.putInt(HDIVIDER, split.getDividerLocation()); } }
java
{ "resource": "" }
q175433
HtmlWriting.writeDirectory
test
public int writeDirectory(HttpServletResponse res, File dir, String path) throws IOException { // error checking if (dir == null) { res.sendError(HttpServletResponse.SC_NOT_FOUND); return 0; } if (!dir.exists() || !dir.isDirectory()) { res.sendError(HttpServletResponse.SC_NOT_FOUND); return 0; } // Get directory as HTML String dirHtmlString = getDirectory(path, dir); thredds.servlet.ServletUtil.setResponseContentLength(res, dirHtmlString); res.setContentType(ContentType.html.getContentHeader()); PrintWriter writer = res.getWriter(); writer.write(dirHtmlString); writer.flush(); return dirHtmlString.length(); }
java
{ "resource": "" }
q175434
BitCounterUncompressed.setBitOffset
test
public void setBitOffset(DataDescriptor dkey) { if (bitPosition == null) bitPosition = new HashMap<DataDescriptor, Integer>(2 * parent.getSubKeys().size()); bitPosition.put(dkey, bitOffset); bitOffset += dkey.getBitWidth(); }
java
{ "resource": "" }
q175435
BitCounterUncompressed.makeNested
test
public BitCounterUncompressed makeNested(DataDescriptor subKey, int n, int row, int replicationCountSize) { if (subCounters == null) subCounters = new HashMap<DataDescriptor, BitCounterUncompressed[]>(5); // assumes DataDescriptor.equals is == BitCounterUncompressed[] subCounter = subCounters.get(subKey); if (subCounter == null) { subCounter = new BitCounterUncompressed[nrows]; // one for each row in this table subCounters.put(subKey, subCounter); } BitCounterUncompressed rc = new BitCounterUncompressed(subKey, n, replicationCountSize); subCounter[row] = rc; return rc; }
java
{ "resource": "" }
q175436
BitCounterUncompressed.countBits
test
int countBits(int startBit) { countBits = replicationCountSize; this.startBit = new int[nrows]; for (int i=0; i<nrows; i++) { this.startBit[i] = startBit + countBits; if (debug) System.out.println(" BitCounterUncompressed row "+i+" startBit="+ this.startBit[i]); for (DataDescriptor nd : parent.subKeys) { BitCounterUncompressed[] bitCounter = (subCounters == null) ? null : subCounters.get(nd); if (bitCounter == null) // a regular field countBits += nd.getBitWidth(); else { if (debug) System.out.println(" ---------> nested "+nd.getFxyName()+" starts at ="+ (startBit + countBits)); countBits += bitCounter[i].countBits(startBit + countBits); if (debug) System.out.println(" <--------- nested "+nd.getFxyName()+" ends at ="+ (startBit + countBits)); } } } return countBits; }
java
{ "resource": "" }
q175437
TextHistoryPane.appendLine
test
public void appendLine( String line) { if (count >= nlines) { try { int remove = Math.max(removeIncr, count - nlines); // nlines may have changed int offset = ta.getLineEndOffset( remove); ta.replaceRange( "", 0, offset); } catch (Exception e) { log.error("Problem in TextHistoryPane", e); } count = nlines - removeIncr; } ta.append(line); ta.append("\n"); count++; // scroll to end ta.setCaretPosition(ta.getText().length()); }
java
{ "resource": "" }
q175438
FeatureDatasetCapabilitiesWriter.makeStationCollectionDocument
test
public Document makeStationCollectionDocument(LatLonRect bb, String[] names) throws IOException { List<DsgFeatureCollection> list = fdp.getPointFeatureCollectionList(); DsgFeatureCollection fc = list.get(0); // LOOK maybe should pass in the dsg? if (!(fc instanceof StationTimeSeriesFeatureCollection)) { throw new UnsupportedOperationException(fc.getClass().getName() + " not a StationTimeSeriesFeatureCollection"); } StationTimeSeriesFeatureCollection sobs = (StationTimeSeriesFeatureCollection) fc; Element rootElem = new Element("stationCollection"); Document doc = new Document(rootElem); List<StationFeature> stations; if (bb != null) stations = sobs.getStationFeatures(bb); else if (names != null) stations = sobs.getStationFeatures(Arrays.asList(names)); else stations = sobs.getStationFeatures(); for (Station s : stations) { Element sElem = new Element("station"); sElem.setAttribute("name", s.getName()); if (s.getWmoId() != null) sElem.setAttribute("wmo_id", s.getWmoId()); if ((s.getDescription() != null) && (s.getDescription().length() > 0)) sElem.addContent(new Element("description").addContent(s.getDescription())); sElem.addContent(new Element("longitude").addContent(Double.toString(s.getLongitude()))); sElem.addContent(new Element("latitide").addContent(Double.toString(s.getLatitude()))); if (!Double.isNaN(s.getAltitude())) sElem.addContent(new Element("altitude").addContent(Double.toString(s.getAltitude()))); rootElem.addContent(sElem); } return doc; }
java
{ "resource": "" }
q175439
FeatureDatasetCapabilitiesWriter.getCapabilitiesDocument
test
public Document getCapabilitiesDocument() { Element rootElem = new Element("capabilities"); Document doc = new Document(rootElem); if (null != path) { rootElem.setAttribute("location", path); Element elem = new Element("featureDataset"); FeatureType ft = fdp.getFeatureType(); elem.setAttribute("type", ft.toString().toLowerCase()); String url = path.replace("dataset.xml", ft.toString().toLowerCase() + ".xml"); elem.setAttribute("url", url); rootElem.addContent(elem); } List<DsgFeatureCollection> list = fdp.getPointFeatureCollectionList(); DsgFeatureCollection fc = list.get(0); // LOOK maybe should pass in the dsg? rootElem.addContent(writeTimeUnit(fc.getTimeUnit())); rootElem.addContent(new Element("AltitudeUnits").addContent(fc.getAltUnits())); // data variables List<? extends VariableSimpleIF> vars = fdp.getDataVariables(); Collections.sort(vars); for (VariableSimpleIF v : vars) { rootElem.addContent(writeVariable(v)); } /* CollectionInfo info; try { info = new DsgCollectionHelper(fc).calcBounds(); } catch (IOException e) { throw new RuntimeException(e); } */ LatLonRect bb = fc.getBoundingBox(); if (bb != null) rootElem.addContent(writeBoundingBox(bb)); // add date range CalendarDateRange dateRange = fc.getCalendarDateRange(); if (dateRange != null) { Element drElem = new Element("TimeSpan"); // from KML drElem.addContent(new Element("begin").addContent(dateRange.getStart().toString())); drElem.addContent(new Element("end").addContent(dateRange.getEnd().toString())); if (dateRange.getResolution() != null) drElem.addContent(new Element("resolution").addContent(dateRange.getResolution().toString())); rootElem.addContent(drElem); } /* add accept list Element elem = new Element("AcceptList"); //elem.addContent(new Element("accept").addContent("raw")); elem.addContent(new Element("accept").addContent("csv").setAttribute("displayName", "csv")); elem.addContent(new Element("accept").addContent("text/csv").setAttribute("displayName", "csv (file)")); elem.addContent(new Element("accept").addContent("xml").setAttribute("displayName", "xml")); elem.addContent(new Element("accept").addContent("text/xml").setAttribute("displayName", "xml (file)")); elem.addContent(new Element("accept").addContent("waterml2").setAttribute("displayName", "WaterML 2.0")); elem.addContent(new Element("accept").addContent("netcdf").setAttribute("displayName", "CF/NetCDF-3")); //elem.addContent(new Element("accept").addContent("ncstream")); rootElem.addContent(elem); */ return doc; }
java
{ "resource": "" }
q175440
VariableIndex.getRecordAt
test
@Nullable synchronized Record getRecordAt(SubsetParams coords) { int[] want = new int[getRank()]; int count = 0; int runIdx = -1; for (Coordinate coord : getCoordinates()) { int idx = -1; switch (coord.getType()) { case runtime: CalendarDate runtimeCooord = coords.getRunTime(); idx = coord.getIndex(runtimeCooord); runIdx = idx; break; case timeIntv: double[] timeIntv = coords.getTimeOffsetIntv(); idx = coord.getIndex(new TimeCoordIntvValue((int) timeIntv[0], (int) timeIntv[1])); break; case time: Double timeOffset = coords.getTimeOffset(); // Double int coordInt = timeOffset.intValue(); idx = coord.getIndex(coordInt); break; case time2D: timeIntv = coords.getTimeOffsetIntv(); if (timeIntv != null) { TimeCoordIntvValue coordTinv = new TimeCoordIntvValue((int) timeIntv[0], (int) timeIntv[1]); idx = ((CoordinateTime2D) coord).findTimeIndexFromVal(runIdx, coordTinv); // LOOK can only use if orthogonal break; } Double timeCoord = coords.getTimeOffset(); if (timeCoord != null) { coordInt = timeCoord.intValue(); idx = ((CoordinateTime2D) coord).findTimeIndexFromVal(runIdx, coordInt); break; } // the OneTime case CoordinateTime2D coord2D = (CoordinateTime2D) coord; if (coord2D.getNtimes() == 1) { idx = 0; break; } throw new IllegalStateException("time2D must have timeOffset ot timeOffsetIntv coordinare"); case vert: double[] vertIntv = coords.getVertCoordIntv(); if (vertIntv != null) { VertCoordValue coordVert = new VertCoordValue(vertIntv[0], vertIntv[1]); idx = coord.getIndex(coordVert); break; } Double vertCoord = coords.getVertCoord(); if (vertCoord != null) { VertCoordValue coordVert = new VertCoordValue(vertCoord); idx = coord.getIndex(coordVert); } break; case ens: Double ensVal = coords.getEnsCoord(); idx = ((CoordinateEns) coord).getIndexByMember(ensVal); break; default: logger.warn("GribCollectionImmutable: missing CoordVal for {}%n", coord.getName()); } if (idx < 0) { logger.debug("Cant find index for value in axis {} in variable {}", coord.getName(), name); return null; } want[count++] = idx; } return sa.getContent(want); }
java
{ "resource": "" }
q175441
VariableIndex.getCoordinate
test
public Coordinate getCoordinate(int index) { int grpIndex = coordIndex.get(index); return group.coords.get(grpIndex); }
java
{ "resource": "" }
q175442
ComboBox.addItem
test
public void addItem( Object item) { if (item == null) return; for (int i=0; i<getItemCount(); i++) { if (item.equals( getItemAt(i))) { if (i == 0) { setSelectedIndex(0); return; // already there } removeItemAt(i); } } // add as first in the list insertItemAt( item, 0); setSelectedIndex(0); }
java
{ "resource": "" }
q175443
TdsErrorHandling.handle
test
@ExceptionHandler(Throwable.class) public ResponseEntity<String> handle(Throwable ex) throws Throwable { // If the exception is annotated with @ResponseStatus rethrow it and let // the framework handle it - like the OrderNotFoundException example // at the start of this post. // AnnotationUtils is a Spring Framework utility class. // see https://spring.io/blog/2013/11/01/exception-handling-in-spring-mvc if (AnnotationUtils.findAnnotation(ex.getClass(), ResponseStatus.class) != null) throw ex; logger.error("uncaught exception", ex); // ex.printStackTrace(); // temporary - remove in production HttpHeaders responseHeaders = new HttpHeaders(); responseHeaders.setContentType(MediaType.TEXT_PLAIN); String msg = ex.getMessage(); StringWriter sw = new StringWriter(); PrintWriter p = new PrintWriter(sw); ex.printStackTrace(p); p.close(); sw.close(); msg = sw.toString(); return new ResponseEntity<>("Throwable exception handled : " + htmlEscape(msg), responseHeaders, HttpStatus.INTERNAL_SERVER_ERROR); }
java
{ "resource": "" }
q175444
Odometer.slice
test
public Slice slice(int i) { if(i < 0 || i >= this.rank) throw new IllegalArgumentException(); return this.slices.get(i); }
java
{ "resource": "" }
q175445
Odometer.step
test
public int step(int firstpos, int lastpos) { for(int i = lastpos - 1; i >= firstpos; i--) { // walk backwards if(this.index.indices[i] > this.endpoint[i]) this.index.indices[i] = this.slices.get(i).getFirst(); // reset this position else { this.index.indices[i] += this.slices.get(i).getStride(); // move to next indices return i; } } return -1; }
java
{ "resource": "" }
q175446
NcepTables.getNcepGenProcess
test
@Nullable public static Map<Integer, String> getNcepGenProcess() { if (genProcessMap != null) return genProcessMap; String path = "resources/grib1/ncep/ncepTableA.xml"; try (InputStream is = GribResourceReader.getInputStream(path)) { SAXBuilder builder = new SAXBuilder(); org.jdom2.Document doc = builder.build(is); Element root = doc.getRootElement(); HashMap<Integer, String> result = new HashMap<>(200); List<Element> params = root.getChildren("parameter"); for (Element elem1 : params) { int code = Integer.parseInt(elem1.getAttributeValue("code")); String desc = elem1.getChildText("description"); result.put(code, desc); } return Collections.unmodifiableMap(result); // all at once - thread safe } catch (IOException | JDOMException ioe) { logger.error("Cant read NCEP Table 1 = " + path, ioe); return null; } }
java
{ "resource": "" }
q175447
CdmrFeatureDataset.isCdmrfEndpoint
test
public static FeatureType isCdmrfEndpoint(String endpoint) throws IOException { HTTPSession httpClient = HTTPFactory.newSession(endpoint); String url = endpoint + "?req=featureType"; // get the header try (HTTPMethod method = HTTPFactory.Get(httpClient, url)) { method.setFollowRedirects(true); int statusCode = method.execute(); if (statusCode != 200) return null; String content = method.getResponseAsString(); return FeatureType.getType(content); } catch (Throwable t) { t.printStackTrace(); return null; } }
java
{ "resource": "" }
q175448
OptSwitch.SetHasValue
test
public void SetHasValue(int type) { this.type = type; if (debug) { System.out.println("sw = " + (char) sw + "; type = " + type + "; set = " + set + "; val = " + val); } }
java
{ "resource": "" }
q175449
Grib1GdsPredefined.factory
test
public static Grib1Gds factory(int center, int gridNumber) { if (center == 7) { return factoryNCEP(gridNumber); } else throw new IllegalArgumentException("Dont have predefined GDS " + gridNumber + " from " + center); }
java
{ "resource": "" }
q175450
IO.copyB
test
static public long copyB(InputStream in, OutputStream out, int bufferSize) throws IOException { long totalBytesRead = 0; int done = 0, next = 1; byte[] buffer = new byte[bufferSize]; while (true) { int n = in.read(buffer); if (n == -1) break; out.write(buffer, 0, n); totalBytesRead += n; if (showCopy) { done += n; if (done > 1000 * 1000 * next) { System.out.println(next + " Mb"); next++; } } } out.flush(); return totalBytesRead; }
java
{ "resource": "" }
q175451
IO.readContents
test
static public String readContents(InputStream is, String charset) throws IOException { ByteArrayOutputStream bout = new ByteArrayOutputStream(10 * default_file_buffersize); IO.copy(is, bout); return bout.toString(charset); }
java
{ "resource": "" }
q175452
IO.readContentsToByteArray
test
static public byte[] readContentsToByteArray(InputStream is) throws IOException { ByteArrayOutputStream bout = new ByteArrayOutputStream(10 * default_file_buffersize); IO.copy(is, bout); return bout.toByteArray(); }
java
{ "resource": "" }
q175453
IO.writeContents
test
static public void writeContents(String contents, OutputStream os) throws IOException { ByteArrayInputStream bin = new ByteArrayInputStream(contents.getBytes(CDM.utf8Charset)); IO.copy(bin, os); }
java
{ "resource": "" }
q175454
IO.copyFileB
test
static public void copyFileB(File fileIn, OutputStream out, int bufferSize) throws IOException { try (FileInputStream fin = new FileInputStream(fileIn)) { InputStream in = new BufferedInputStream(fin); IO.copyB(in, out, bufferSize); } }
java
{ "resource": "" }
q175455
IO.copyRafB
test
static public long copyRafB(ucar.unidata.io.RandomAccessFile raf, long offset, long length, OutputStream out, byte[] buffer) throws IOException { int bufferSize = buffer.length; long want = length; raf.seek(offset); while (want > 0) { int len = (int) Math.min(want, bufferSize); int bytesRead = raf.read(buffer, 0, len); if (bytesRead <= 0) break; out.write(buffer, 0, bytesRead); want -= bytesRead; } out.flush(); return length - want; }
java
{ "resource": "" }
q175456
IO.copyDirTree
test
static public void copyDirTree(String fromDirName, String toDirName) throws IOException { File fromDir = new File(fromDirName); File toDir = new File(toDirName); if (!fromDir.exists()) return; if (!toDir.exists()) { if (!toDir.mkdirs()) { throw new IOException("Could not create directory: " + toDir); } } File[] files = fromDir.listFiles(); if (files != null) for (File f : files) { if (f.isDirectory()) copyDirTree(f.getAbsolutePath(), toDir.getAbsolutePath() + "/" + f.getName()); else copyFile(f.getAbsolutePath(), toDir.getAbsolutePath() + "/" + f.getName()); } }
java
{ "resource": "" }
q175457
IO.readFileToByteArray
test
static public byte[] readFileToByteArray(String filename) throws IOException { try (FileInputStream fin = new FileInputStream(filename)) { InputStream in = new BufferedInputStream(fin); return readContentsToByteArray(in); } }
java
{ "resource": "" }
q175458
IO.readFile
test
static public String readFile(String filename) throws IOException { try (FileInputStream fin = new FileInputStream(filename)) { InputStreamReader reader = new InputStreamReader(fin, CDM.utf8Charset); StringWriter swriter = new StringWriter(50000); UnsynchronizedBufferedWriter writer = new UnsynchronizedBufferedWriter(swriter); writer.write(reader); return swriter.toString(); } }
java
{ "resource": "" }
q175459
IO.writeToFile
test
static public void writeToFile(String contents, File file) throws IOException { try (FileOutputStream fout = new FileOutputStream(file)) { OutputStreamWriter fw = new OutputStreamWriter(fout, CDM.utf8Charset); UnsynchronizedBufferedWriter writer = new UnsynchronizedBufferedWriter(fw); writer.write(contents); writer.flush(); } }
java
{ "resource": "" }
q175460
IO.writeToFile
test
static public void writeToFile(String contents, String fileOutName) throws IOException { writeToFile(contents, new File(fileOutName)); }
java
{ "resource": "" }
q175461
IO.writeToFile
test
static public long writeToFile(InputStream in, String fileOutName) throws IOException { try (FileOutputStream fout = new FileOutputStream( fileOutName)) { OutputStream out = new BufferedOutputStream(fout); return IO.copy(in, out); } finally { if (null != in) in.close(); } }
java
{ "resource": "" }
q175462
DTSServlet.parseExceptionHandler
test
public void parseExceptionHandler(ParseException pe, HttpServletResponse response) { //log.error("DODSServlet.parseExceptionHandler", pe); if(Debug.isSet("showException")) { log.error(pe.toString()); printThrowable(pe); } try { BufferedOutputStream eOut = new BufferedOutputStream(response.getOutputStream()); response.setHeader("Content-Description", "dods-error"); // This should probably be set to "plain" but this works, the // C++ slients don't barf as they would if I sent "plain" AND // the C++ don't expect compressed data if I do this... response.setHeader("Content-Encoding", ""); // response.setContentType("text/plain"); // Strip any double quotes out of the parser error message. // These get stuck in auto-magically by the javacc generated parser // code and they break our error parser (bummer!) String msg = pe.getMessage().replace('\"', '\''); DAP2Exception de2 = new DAP2Exception(opendap.dap.DAP2Exception.CANNOT_READ_FILE, msg); de2.print(eOut); } catch (IOException ioe) { log.error("Cannot respond to client! IO Error: " + ioe.getMessage()); } }
java
{ "resource": "" }
q175463
DTSServlet.dap2ExceptionHandler
test
public void dap2ExceptionHandler(DAP2Exception de, HttpServletResponse response) { //log.info("DODSServlet.dodsExceptionHandler (" + de.getErrorCode() + ") " + de.getErrorMessage()); if(Debug.isSet("showException")) { log.error(de.toString()); de.printStackTrace(); printDODSException(de); } // Convert Dap2Excaption code to an HttpCode switch (de.getErrorCode()) { case DAP2Exception.NO_SUCH_FILE: case DAP2Exception.CANNOT_READ_FILE: response.setStatus(HttpStatus.SC_NOT_FOUND); break; case DAP2Exception.NO_AUTHORIZATION: response.setStatus(HttpStatus.SC_UNAUTHORIZED); break; case DAP2Exception.NO_SUCH_VARIABLE: case DAP2Exception.MALFORMED_EXPR: case DAP2Exception.UNKNOWN_ERROR: // fall thru default: response.setStatus(HttpStatus.SC_BAD_REQUEST); break; } try { BufferedOutputStream eOut = new BufferedOutputStream(response.getOutputStream()); response.setHeader("Content-Description", "dods-error"); // This should probably be set to "plain" but this works, the // C++ slients don't barf as they would if I sent "plain" AND // the C++ don't expect compressed data if I do this... response.setHeader("Content-Encoding", ""); de.print(eOut); } catch (IOException ioe) { log.error("Cannot respond to client! IO Error: " + ioe.getMessage()); } }
java
{ "resource": "" }
q175464
DTSServlet.badURL
test
public void badURL(HttpServletRequest request, HttpServletResponse response) throws Exception { if(Debug.isSet("showResponse")) { log.debug("Sending Bad URL Page."); } //log.info("DODSServlet.badURL " + rs.getRequest().getRequestURI()); response.setContentType("text/html"); response.setHeader("XDODS-Server", getServerVersion()); response.setHeader("Content-Description", "dods-error"); // Commented because of a bug in the OPeNDAP C++ stuff... //rs.getResponse().setHeader("Content-Encoding", "plain"); PrintWriter pw = new PrintWriter(new OutputStreamWriter(response.getOutputStream(), Util.UTF8)); printBadURLPage(pw); printHelpPage(pw); pw.flush(); response.setStatus(HttpServletResponse.SC_OK); }
java
{ "resource": "" }
q175465
DTSServlet.doGetCatalog
test
public void doGetCatalog(ReqState rs) throws Exception { rs.getResponse().setHeader("XDODS-Server", getServerVersion()); rs.getResponse().setContentType("text/xml"); rs.getResponse().setHeader("Content-Description", "dods-catalog"); PrintWriter pw = new PrintWriter(new OutputStreamWriter(rs.getResponse().getOutputStream(), Util.UTF8)); printCatalog(rs, pw); pw.flush(); rs.getResponse().setStatus(HttpServletResponse.SC_OK); }
java
{ "resource": "" }
q175466
DTSServlet.printCatalog
test
protected void printCatalog(ReqState rs, PrintWriter os) throws IOException { os.println("Catalog not available for this server"); os.println("Server version = " + getServerVersion()); }
java
{ "resource": "" }
q175467
DTSServlet.printStatus
test
protected void printStatus(PrintWriter os) { os.println("<h2>Server version = " + getServerVersion() + "</h2>"); os.println("<h2>Number of Requests Received = " + HitCounter + "</h2>"); if(track) { int n = prArr.size(); int pending = 0; StringBuilder preqs = new StringBuilder(); for(int i = 0; i < n; i++) { ReqState rs = (ReqState) prArr.get(i); RequestDebug reqD = (RequestDebug) rs.getUserObject(); if(!reqD.done) { preqs.append("<pre>-----------------------\n"); preqs.append("Request["); preqs.append(reqD.reqno); preqs.append("]("); preqs.append(reqD.threadDesc); preqs.append(") is pending.\n"); preqs.append(rs.toString()); preqs.append("</pre>"); pending++; } } os.println("<h2>" + pending + " Pending Request(s)</h2>"); os.println(preqs.toString()); } }
java
{ "resource": "" }
q175468
DTSServlet.printBadURLPage
test
private void printBadURLPage(PrintWriter pw) { pw.println("<h3>Error in URL</h3>"); pw.println("The URL extension did not match any that are known by this"); pw.println("server. Below is a list of the five extensions that are be recognized by"); pw.println("all OPeNDAP servers. If you think that the server is broken (that the URL you"); pw.println("submitted should have worked), then please contact the"); pw.println("OPeNDAP user support coordinator at: "); pw.println("<a href=\"mailto:support@unidata.ucar.edu\">support@unidata.ucar.edu</a><p>"); }
java
{ "resource": "" }
q175469
Grib2SectionIdentification.getReferenceDate
test
public CalendarDate getReferenceDate() { return CalendarDate.of(null, year, month, day, hour, minute, second); }
java
{ "resource": "" }
q175470
NcStreamIosp.readVlenData
test
private Array readVlenData(Variable v, Section section, DataStorage dataStorage) throws IOException, InvalidRangeException { raf.seek(dataStorage.filePos); int nelems = readVInt(raf); Array[] result = new Array[nelems]; for (int elem = 0; elem < nelems; elem++) { int dsize = readVInt(raf); byte[] data = new byte[dsize]; raf.readFully(data); Array dataArray = Array.factory(v.getDataType(), (int[]) null, ByteBuffer.wrap(data)); result[elem] = dataArray; } // return Array.makeObjectArray(v.getDataType(), result[0].getClass(), new int[]{nelems}, result); return Array.makeVlenArray(new int[]{nelems}, result); //return dataArray.section(section.getRanges()); }
java
{ "resource": "" }
q175471
NcmlCollectionReader.readNcML
test
static public NcmlCollectionReader readNcML(String ncmlString, Formatter errlog) throws IOException { StringReader reader = new StringReader(ncmlString); org.jdom2.Document doc; try { SAXBuilder builder = new SAXBuilder(); if (debugURL) System.out.println(" NetcdfDataset NcML String = <" + ncmlString + ">"); doc = builder.build(new StringReader(ncmlString)); } catch (JDOMException e) { throw new IOException(e.getMessage()); } if (debugXML) System.out.println(" SAXBuilder done"); return readXML(doc, errlog, null); }
java
{ "resource": "" }
q175472
NcmlCollectionReader.open
test
static public NcmlCollectionReader open(String ncmlLocation, Formatter errlog) throws IOException { if (!ncmlLocation.startsWith("http:") && !ncmlLocation.startsWith("file:")) ncmlLocation = "file:" + ncmlLocation; URL url = new URL(ncmlLocation); org.jdom2.Document doc; try { SAXBuilder builder = new SAXBuilder(); if (debugURL) System.out.println(" NetcdfDataset URL = <" + url + ">"); doc = builder.build(url); } catch (JDOMException e) { throw new IOException(e.getMessage()); } if (debugXML) System.out.println(" SAXBuilder done"); return readXML(doc, errlog, ncmlLocation); }
java
{ "resource": "" }
q175473
StringUtil2.allow
test
static public String allow(String x, String allowChars, char replaceChar) { boolean ok = true; for (int pos = 0; pos < x.length(); pos++) { char c = x.charAt(pos); if (!(Character.isLetterOrDigit(c) || (0 <= allowChars.indexOf(c)))) { ok = false; break; } } if (ok) return x; // gotta do it StringBuilder sb = new StringBuilder(x); for (int pos = 0; pos < sb.length(); pos++) { char c = sb.charAt(pos); if (Character.isLetterOrDigit(c) || (0 <= allowChars.indexOf(c))) { continue; } sb.setCharAt(pos, replaceChar); } return sb.toString(); }
java
{ "resource": "" }
q175474
StringUtil2.cleanup
test
public static String cleanup(byte[] h) { byte[] bb = new byte[h.length]; int count = 0; for (byte b : h) { if (b >= 32 && b < 127) bb[count++] = b; } return new String(bb, 0, count, CDM.utf8Charset); }
java
{ "resource": "" }
q175475
StringUtil2.filter
test
static public String filter(String x, String okChars) { boolean ok = true; for (int pos = 0; pos < x.length(); pos++) { char c = x.charAt(pos); if (!(Character.isLetterOrDigit(c) || (0 <= okChars.indexOf(c)))) { ok = false; break; } } if (ok) { return x; } // gotta do it StringBuilder sb = new StringBuilder(x.length()); for (int pos = 0; pos < x.length(); pos++) { char c = x.charAt(pos); if (Character.isLetterOrDigit(c) || (0 <= okChars.indexOf(c))) { sb.append(c); } } return sb.toString(); }
java
{ "resource": "" }
q175476
StringUtil2.filter7bits
test
static public String filter7bits(String s) { if (s == null) return null; char[] bo = new char[s.length()]; int count = 0; for (int i = 0; i < s.length(); i++) { char c = s.charAt(i); if ((c < 128) && (c > 31) || ((c == '\n') || (c == '\t'))) { bo[count++] = c; } } return new String(bo, 0, count); }
java
{ "resource": "" }
q175477
StringUtil2.makeValidCdmObjectName
test
static public String makeValidCdmObjectName(String name) { name = name.trim(); // common case no change boolean ok = true; for (int i = 0; i < name.length(); i++) { int c = name.charAt(i); if (c < 0x20) ok = false; if (c == '/') ok = false; if (c == ' ') ok = false; if (!ok) break; } if (ok) return name; StringBuilder sbuff = new StringBuilder(name.length()); for (int i = 0, len = name.length(); i < len; i++) { int c = name.charAt(i); if ((c == '/') || (c == ' ')) sbuff.append('_'); else if (c >= 0x20) sbuff.append((char) c); } return sbuff.toString(); }
java
{ "resource": "" }
q175478
StringUtil2.match
test
static public int match(String s1, String s2) { int i = 0; while ((i < s1.length()) && (i < s2.length())) { if (s1.charAt(i) != s2.charAt(i)) { break; } i++; } return i; }
java
{ "resource": "" }
q175479
StringUtil2.padLeft
test
public static String padLeft(String s, int desiredLength, String padString) { while (s.length() < desiredLength) { s = padString + s; } return s; }
java
{ "resource": "" }
q175480
StringUtil2.padRight
test
public static String padRight(String s, int desiredLength, String padString) { StringBuilder ret = new StringBuilder(s); while (ret.length() < desiredLength) { ret.append(padString); } return ret.toString(); }
java
{ "resource": "" }
q175481
StringUtil2.remove
test
static public String remove(String s, String sub) { int len = sub.length(); int pos; while (0 <= (pos = s.indexOf(sub))) { s = s.substring(0, pos) + s.substring(pos + len); } return s; }
java
{ "resource": "" }
q175482
StringUtil2.remove
test
static public String remove(String s, int c) { if (0 > s.indexOf(c)) { // none return s; } StringBuilder buff = new StringBuilder(s); int i = 0; while (i < buff.length()) { if (buff.charAt(i) == c) { buff.deleteCharAt(i); } else { i++; } } return buff.toString(); }
java
{ "resource": "" }
q175483
StringUtil2.removeFromEnd
test
static public String removeFromEnd(String s, int c) { if (0 > s.indexOf(c)) // none return s; int len = s.length(); while ((s.charAt(len - 1) == c) && (len > 0)) len--; if (len == s.length()) return s; return s.substring(0, len); }
java
{ "resource": "" }
q175484
StringUtil2.collapseWhitespace
test
static public String collapseWhitespace(String s) { int len = s.length(); StringBuilder b = new StringBuilder(len); for (int i = 0; i < len; i++) { char c = s.charAt(i); if (!Character.isWhitespace(c)) { b.append(c); } else { b.append(' '); while ((i + 1 < len) && Character.isWhitespace(s.charAt(i + 1))) { i++; /// skip further whitespace } } } return b.toString(); }
java
{ "resource": "" }
q175485
StringUtil2.replace
test
static public String replace(String s, char out, String in) { if (s.indexOf(out) < 0) { return s; } // gotta do it StringBuilder sb = new StringBuilder(s); replace(sb, out, in); return sb.toString(); }
java
{ "resource": "" }
q175486
StringUtil2.replace
test
static public String replace(String x, char[] replaceChar, String[] replaceWith) { // common case no replacement boolean ok = true; for (char aReplaceChar : replaceChar) { int pos = x.indexOf(aReplaceChar); ok = (pos < 0); if (!ok) break; } if (ok) return x; // gotta do it StringBuilder sb = new StringBuilder(x); for (int i = 0; i < replaceChar.length; i++) { int pos = x.indexOf(replaceChar[i]); if (pos >= 0) { replace(sb, replaceChar[i], replaceWith[i]); } } return sb.toString(); }
java
{ "resource": "" }
q175487
StringUtil2.replace
test
public static String replace(String string, String pattern, String value) { if (pattern.length() == 0) return string; if (!string.contains(pattern)) return string; // ok gotta do it StringBuilder returnValue = new StringBuilder(); int patternLength = pattern.length(); while (true) { int idx = string.indexOf(pattern); if (idx < 0) break; returnValue.append(string.substring(0, idx)); if (value != null) returnValue.append(value); string = string.substring(idx + patternLength); } returnValue.append(string); return returnValue.toString(); }
java
{ "resource": "" }
q175488
StringUtil2.substitute
test
static public String substitute(String original, String match, String subst) { String s = original; int pos; while (0 <= (pos = s.indexOf(match))) { StringBuilder sb = new StringBuilder(s); s = sb.replace(pos, pos + match.length(), subst).toString(); } return s; }
java
{ "resource": "" }
q175489
StringUtil2.substitute
test
static public String substitute(String original, String[] match, String[] subst) { boolean ok = true; for (String aMatch : match) { if (original.contains(aMatch)) { ok = false; break; } } if (ok) { return original; } // gotta do it; StringBuilder sb = new StringBuilder(original); for (int i = 0; i < match.length; i++) { substitute(sb, match[i], subst[i]); } return sb.toString(); }
java
{ "resource": "" }
q175490
StringUtil2.remove
test
static public void remove(StringBuilder sb, String out) { int i = 0; while (i < sb.length()) { int c = sb.charAt(i); boolean ok = true; for (int j = 0; j < out.length(); j++) { if (out.charAt(j) == c) { sb.delete(i, i + 1); ok = false; break; } } if (ok) i++; } }
java
{ "resource": "" }
q175491
StringUtil2.unreplace
test
static public void unreplace(StringBuilder sb, String out, char in) { int pos; while (0 <= (pos = sb.indexOf(out))) { sb.setCharAt(pos, in); sb.delete(pos + 1, pos + out.length()); } }
java
{ "resource": "" }
q175492
StringUtil2.replace
test
static public void replace(StringBuilder sb, String out, String in) { for (int i = 0; i < sb.length(); i++) { int c = sb.charAt(i); for (int j = 0; j < out.length(); j++) { if (out.charAt(j) == c) sb.setCharAt(i, in.charAt(j)); } } }
java
{ "resource": "" }
q175493
StringUtil2.substitute
test
static public void substitute(StringBuilder sbuff, String match, String subst) { int pos, fromIndex = 0; int substLen = subst.length(); int matchLen = match.length(); while (0 <= (pos = sbuff.indexOf(match, fromIndex))) { sbuff.replace(pos, pos + matchLen, subst); fromIndex = pos + substLen; // make sure dont get into an infinite loop } }
java
{ "resource": "" }
q175494
StringUtil2.trim
test
static public String trim(String s, int bad) { int len = s.length(); int st = 0; while ((st < len) && (s.charAt(st) == bad)) { st++; } while ((st < len) && (s.charAt(len - 1) == bad)) { len--; } return ((st > 0) || (len < s.length())) ? s.substring(st, len) : s; }
java
{ "resource": "" }
q175495
InvDatasetFeatureCollection.processEvent
test
@Subscribe public void processEvent(CollectionUpdateEvent event) { if (!config.collectionName.equals(event.getCollectionName())) return; // not for me try { update(event.getType()); } catch (IOException e) { logger.error("Error processing event", e); } }
java
{ "resource": "" }
q175496
InvDatasetFeatureCollection.checkState
test
protected State checkState() throws IOException { State localState; synchronized (lock) { if (first) { firstInit(); updateCollection(state, config.updateConfig.updateType); // makeDatasetTop(state); first = false; } localState = state.copy(); } return localState; }
java
{ "resource": "" }
q175497
InvDatasetFeatureCollection.update
test
protected void update(CollectionUpdateType force) throws IOException { // this may be called from a background thread, or from checkState() request thread State localState; synchronized (lock) { if (first) { state = checkState(); state.lastInvChange = System.currentTimeMillis(); return; } // do the update in a local object localState = state.copy(); } updateCollection(localState, force); // makeDatasetTop(localState); localState.lastInvChange = System.currentTimeMillis(); // switch to live synchronized (lock) { state = localState; } }
java
{ "resource": "" }
q175498
Grib2ReportPanel.doUniqueTemplates
test
private void doUniqueTemplates(Formatter f, MCollection dcm, boolean useIndex) throws IOException { f.format("Show Unique GDS and PDS templates%n"); Map<Integer, FileList> gdsSet = new HashMap<>(); Map<Integer, FileList> pdsSet = new HashMap<>(); Map<Integer, FileList> drsSet = new HashMap<>(); for (MFile mfile : dcm.getFilesSorted()) { f.format(" %s%n", mfile.getPath()); doUniqueTemplates(mfile, gdsSet, pdsSet, drsSet, f); } List<FileList> sorted = new ArrayList<>(gdsSet.values()); Collections.sort(sorted); for (FileList gdsl : sorted) { f.format("%nGDS %s template= %d %n", gdsl.name, gdsl.template); for (FileCount fc : gdsl.fileList) { f.format(" %5d %s %n", fc.countRecords, fc.f.getPath()); } } List<FileList> sortedPds = new ArrayList<>(pdsSet.values()); Collections.sort(sortedPds); for (FileList pdsl : sortedPds) { f.format("%n===================================================%n"); f.format("%nPDS %s template= %d %n", pdsl.name, pdsl.template); for (FileCount fc : pdsl.fileList) { f.format(" %5d %s %n", fc.countRecords, fc.f.getPath()); } } List<FileList> sortedDrs = new ArrayList<>(drsSet.values()); Collections.sort(sortedDrs); for (FileList pdsl : sortedDrs) { f.format("%n===================================================%n"); f.format("%nDRS %s template= %d %n", pdsl.name, pdsl.template); for (FileCount fc : pdsl.fileList) { f.format(" %5d %s %n", fc.countRecords, fc.f.getPath()); } } }
java
{ "resource": "" }
q175499
InvCatalogRef.getDatasets
test
@Override public java.util.List<InvDataset> getDatasets() { read(); return useProxy ? proxy.getDatasets() : super.getDatasets(); }
java
{ "resource": "" }