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meta_information
dict
q16800
get_institute_trend_graph_url
train
def get_institute_trend_graph_url(institute, start, end): """ Institute trend graph for machine category. """ filename = get_institute_trend_graph_filename(institute, start, end) urls = { 'graph_url': urlparse.urljoin(GRAPH_URL, filename + ".png"), 'data_url': urlparse.urljoin(GRAPH_URL, fi...
python
{ "resource": "" }
q16801
get_institutes_trend_graph_urls
train
def get_institutes_trend_graph_urls(start, end): """ Get all institute trend graphs. """ graph_list = [] for institute in Institute.objects.all(): urls = get_institute_trend_graph_url(institute, start, end) urls['institute'] = institute graph_list.append(urls) return graph_list
python
{ "resource": "" }
q16802
PersonManager._create_user
train
def _create_user( self, username, email, short_name, full_name, institute, password, is_admin, **extra_fields): """Creates a new active person. """ # Create Person person = self.model( username=username, email=email, short_name=short_name, full_na...
python
{ "resource": "" }
q16803
PersonManager.create_user
train
def create_user( self, username, email, short_name, full_name, institute, password=None, **extra_fields): """ Creates a new ordinary person. """ return self._create_user( username=username, email=email, short_name=short_name, full_name=full_name, ...
python
{ "resource": "" }
q16804
PersonManager.create_superuser
train
def create_superuser( self, username, email, short_name, full_name, institute, password, **extra_fields): """ Creates a new person with super powers. """ return self._create_user( username=username, email=email, institute=institute, password=password, ...
python
{ "resource": "" }
q16805
do_application_actions_plus
train
def do_application_actions_plus(parser, token): """ Render actions available with extra text. """ nodelist = parser.parse(('end_application_actions',)) parser.delete_first_token() return ApplicationActionsPlus(nodelist)
python
{ "resource": "" }
q16806
run
train
def run(cmds, **kwargs): """ Wrapper around subprocess.run, with unicode decoding of output. Additional kwargs are passed to subprocess.run. """ proc = sp.Popen(cmds, bufsize=-1, stdout=sp.PIPE, stderr=sp.STDOUT, close_fds=sys.platform != 'win32') for line in proc.stdout: ...
python
{ "resource": "" }
q16807
symlink
train
def symlink(target, linkname): """ Create a symlink to `target` called `linkname`. Converts `target` and `linkname` to absolute paths; creates `dirname(linkname)` if needed. """ target = os.path.abspath(target) linkname = os.path.abspath(linkname) if not os.path.exists(target): ...
python
{ "resource": "" }
q16808
upload
train
def upload(host, user, local_dir, remote_dir, rsync_options=RSYNC_OPTIONS): """ Upload a file or directory via rsync. Parameters ---------- host : str or None If None, omit the host part and just transfer locally user : str or None If None, omit the user part local_dir : s...
python
{ "resource": "" }
q16809
local_link
train
def local_link(local_fn, remote_fn, staging): """ Creates a symlink to a local staging area. The link name is built from `remote_fn`, but the absolute path is put inside the staging directory. Example ------- If we have the following initial setup:: cwd="/home/user" local...
python
{ "resource": "" }
q16810
stage
train
def stage(x, staging): """ Stage an object to the `staging` directory. If the object is a Track and is one of the types that needs an index file (bam, vcfTabix), then the index file will be staged as well. Returns a list of the linknames created. """ linknames = [] # Objects that don'...
python
{ "resource": "" }
q16811
stage_hub
train
def stage_hub(hub, staging=None): """ Stage a hub by symlinking all its connected files to a local directory. """ linknames = [] if staging is None: staging = tempfile.mkdtemp() for obj, level in hub.leaves(base.HubComponent, intermediate=True): linknames.extend(stage(obj, stagin...
python
{ "resource": "" }
q16812
upload_hub
train
def upload_hub(hub, host, remote_dir, user=None, port=22, rsync_options=RSYNC_OPTIONS, staging=None): """ Renders, stages, and uploads a hub. """ hub.render() if staging is None: staging = tempfile.mkdtemp() staging, linknames = stage_hub(hub, staging=staging) local_dir = os.path.joi...
python
{ "resource": "" }
q16813
get_project_members
train
def get_project_members(machine, project_id): """ Returns list of usernames given a project id """ try: project = Project.objects.get(pid=project_id) except Project.DoesNotExist: return 'Project not found' return [x.username for x in project.group.members.all()]
python
{ "resource": "" }
q16814
get_projects
train
def get_projects(machine): """ Returns list of project ids """ query = Project.active.all() return [x.pid for x in query]
python
{ "resource": "" }
q16815
get_project
train
def get_project(username, project, machine_name=None): """ Used in the submit filter to make sure user is in project """ try: account = Account.objects.get( username=username, date_deleted__isnull=True) except Account.DoesNotExist: return "Account '%s' not fo...
python
{ "resource": "" }
q16816
get_users_projects
train
def get_users_projects(user): """ List projects a user is part of """ person = user projects = person.projects.filter(is_active=True) return 0, [x.pid for x in projects]
python
{ "resource": "" }
q16817
redirect_to
train
def redirect_to(request, url, permanent=True, query_string=False, **kwargs): r""" Redirect to a given URL. The given url may contain dict-style string formatting, which will be interpolated against the params in the URL. For example, to redirect from ``/foo/<id>/`` to ``/bar/<id>/``, you could use...
python
{ "resource": "" }
q16818
assert_strong_password
train
def assert_strong_password(username, password, old_password=None): """Raises ValueError if the password isn't strong. Returns the password otherwise.""" # test the length try: minlength = settings.MIN_PASSWORD_LENGTH except AttributeError: minlength = 12 if len(password) < minl...
python
{ "resource": "" }
q16819
_lookup
train
def _lookup(cls: str) -> LdapObjectClass: """ Lookup module.class. """ if isinstance(cls, str): module_name, _, name = cls.rpartition(".") module = importlib.import_module(module_name) try: cls = getattr(module, name) except AttributeError: raise Attribute...
python
{ "resource": "" }
q16820
DataStore.save_account
train
def save_account(self, account: Account) -> None: """ Account was saved. """ person = account.person if self._primary_group == 'institute': lgroup = self._get_group(person.institute.group.name) elif self._primary_group == 'default_project': if account.default_proj...
python
{ "resource": "" }
q16821
DataStore.delete_account
train
def delete_account(self, account): """ Account was deleted. """ try: luser = self._get_account(account.username) groups = luser['groups'].load(database=self._database) for group in groups: changes = changeset(group, {}) changes = group....
python
{ "resource": "" }
q16822
DataStore.set_account_password
train
def set_account_password(self, account, raw_password): """ Account's password was changed. """ luser = self._get_account(account.username) changes = changeset(luser, { 'password': raw_password, }) save(changes, database=self._database)
python
{ "resource": "" }
q16823
DataStore.add_account_to_group
train
def add_account_to_group(self, account, group): """ Add account to group. """ lgroup: OpenldapGroup = self._get_group(group.name) person: OpenldapAccount = self._get_account(account.username) changes = changeset(lgroup, {}) changes = lgroup.add_member(changes, person) sa...
python
{ "resource": "" }
q16824
DataStore.save_group
train
def save_group(self, group): """ Group was saved. """ # If group already exists, take over existing group rather then error. try: lgroup = self._get_group(group.name) changes = changeset(lgroup, {}) except ObjectDoesNotExist: lgroup = self._group_class...
python
{ "resource": "" }
q16825
DataStore.delete_group
train
def delete_group(self, group): """ Group was deleted. """ try: lgroup = self._get_group(group.name) delete(lgroup, database=self._database) except ObjectDoesNotExist: # it doesn't matter if it doesn't exist pass
python
{ "resource": "" }
q16826
DataStore.get_group_details
train
def get_group_details(self, group): """ Get the group details. """ result = {} try: lgroup = self._get_group(group.name) lgroup = preload(lgroup, database=self._database) except ObjectDoesNotExist: return result for i, j in lgroup.items(): ...
python
{ "resource": "" }
q16827
_rank
train
def _rank(sample): """ Assign numeric ranks to all values in the sample. The ranks begin with 1 for the smallest value. When there are groups of tied values, assign a rank equal to the midpoint of unadjusted rankings. E.g.:: >>> rank({3: 1, 5: 4, 9: 1}) {3: 1.0, 5: 3.5, 9: 6.0} ...
python
{ "resource": "" }
q16828
_tie_correct
train
def _tie_correct(sample): """ Returns the tie correction value for U. See: https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.tiecorrect.html """ tc = 0 n = sum(sample.values()) if n < 2: return 1.0 # Avoid a ``ZeroDivisionError``. for k in sorted(sample.keys()...
python
{ "resource": "" }
q16829
ndtr
train
def ndtr(a): """ Returns the area under the Gaussian probability density function, integrated from minus infinity to x. See: https://docs.scipy.org/doc/scipy/reference/generated/scipy.special.ndtr.html#scipy.special.ndtr """ sqrth = math.sqrt(2) / 2 x = float(a) * sqrth z = abs(x) ...
python
{ "resource": "" }
q16830
mann_whitney_u
train
def mann_whitney_u(sample1, sample2, use_continuity=True): """ Computes the Mann-Whitney rank test on both samples. Each sample is expected to be of the form:: {1: 5, 2: 20, 3: 12, ...} Returns a named tuple with: ``u`` equal to min(U for sample1, U for sample2), and ``p`` equ...
python
{ "resource": "" }
q16831
get_pings
train
def get_pings(sc, app=None, build_id=None, channel=None, doc_type='saved_session', fraction=1.0, schema=None, source_name='telemetry', source_version='4', submission_date=None, version=None): """ Returns a RDD of Telemetry submissions for a given filtering criteria. :param sc: an in...
python
{ "resource": "" }
q16832
get_pings_properties
train
def get_pings_properties(pings, paths, only_median=False, with_processes=False, histograms_url=None, additional_histograms=None): """ Returns a RDD of a subset of properties of pings. Child histograms are automatically merged with the parent histogram. If one of the paths point...
python
{ "resource": "" }
q16833
get_one_ping_per_client
train
def get_one_ping_per_client(pings): """ Returns a single ping for each client in the RDD. THIS METHOD IS NOT RECOMMENDED: The ping to be returned is essentially selected at random. It is also expensive as it requires data to be shuffled around. It should be run only after extracting a subset with ...
python
{ "resource": "" }
q16834
admin_required
train
def admin_required(function=None): """ Decorator for views that checks that the user is an administrator, redirecting to the log-in page if necessary. """ def check_perms(user): # if user not logged in, show login form if not user.is_authenticated: return False # ...
python
{ "resource": "" }
q16835
SlurmDataStore._read_output
train
def _read_output(self, command): """ Read CSV delimited input from Slurm. """ cmd = [] cmd.extend(self._prefix) cmd.extend([self._path, "-iP"]) cmd.extend(command) command = cmd logger.debug("Cmd %s" % command) null = open('/dev/null', 'w') proces...
python
{ "resource": "" }
q16836
SlurmDataStore.get_project
train
def get_project(self, projectname): """ Get the project details from Slurm. """ cmd = ["list", "accounts", "where", "name=%s" % projectname] results = self._read_output(cmd) if len(results) == 0: return None elif len(results) > 1: logger.error( ...
python
{ "resource": "" }
q16837
SlurmDataStore.get_users_in_project
train
def get_users_in_project(self, projectname): """ Get list of users in project from Slurm. """ cmd = ["list", "assoc", "where", "account=%s" % projectname] results = self._read_output(cmd) user_list = [] for result in results: if result["User"] != "": ...
python
{ "resource": "" }
q16838
SlurmDataStore.get_projects_in_user
train
def get_projects_in_user(self, username): """ Get list of projects in user from Slurm. """ cmd = ["list", "assoc", "where", "user=%s" % username] results = self._read_output(cmd) project_list = [] for result in results: project_list.append(result["Account"]) ...
python
{ "resource": "" }
q16839
TrackDb.add_tracks
train
def add_tracks(self, track): """ Add a track or iterable of tracks. Parameters ---------- track : iterable or Track Iterable of :class:`Track` objects, or a single :class:`Track` object. """ from trackhub import BaseTrack if isins...
python
{ "resource": "" }
q16840
loggable
train
def loggable(obj): """Return "True" if the obj implements the minimum Logger API required by the 'trace' decorator. """ if isinstance(obj, logging.Logger): return True else: return (inspect.isclass(obj) and inspect.ismethod(getattr(obj, 'debug', None)) ...
python
{ "resource": "" }
q16841
_formatter_self
train
def _formatter_self(name, value): """Format the "self" variable and value on instance methods. """ __mname = value.__module__ if __mname != '__main__': return '%s = <%s.%s object at 0x%x>' \ % (name, __mname, value.__class__.__name__, id(value)) else: return '%s = <%s obj...
python
{ "resource": "" }
q16842
_formatter_class
train
def _formatter_class(name, value): """Format the "klass" variable and value on class methods. """ __mname = value.__module__ if __mname != '__main__': return "%s = <type '%s.%s'>" % (name, __mname, value.__name__) else: return "%s = <type '%s'>" % (name, value.__name__)
python
{ "resource": "" }
q16843
get_formatter
train
def get_formatter(name): """Return the named formatter function. See the function "set_formatter" for details. """ if name in ('self', 'instance', 'this'): return af_self elif name == 'class': return af_class elif name in ('named', 'param', 'parameter'): return af_named ...
python
{ "resource": "" }
q16844
__lookup_builtin
train
def __lookup_builtin(name): """Lookup the parameter name and default parameter values for builtin functions. """ global __builtin_functions if __builtin_functions is None: builtins = dict() for proto in __builtins: pos = proto.find('(') name, params, defaults ...
python
{ "resource": "" }
q16845
application_list
train
def application_list(request): """ a user wants to see all applications possible. """ if util.is_admin(request): queryset = Application.objects.all() else: queryset = Application.objects.get_for_applicant(request.user) q_filter = ApplicationFilter(request.GET, queryset=queryset) t...
python
{ "resource": "" }
q16846
profile_application_list
train
def profile_application_list(request): """ a logged in user wants to see all his pending applications. """ config = tables.RequestConfig(request, paginate={"per_page": 5}) person = request.user my_applications = Application.objects.get_for_applicant(person) my_applications = ApplicationTable(my_app...
python
{ "resource": "" }
q16847
application_detail
train
def application_detail(request, application_id, state=None, label=None): """ A authenticated used is trying to access an application. """ application = base.get_application(pk=application_id) state_machine = base.get_state_machine(application) return state_machine.process(request, application, state, la...
python
{ "resource": "" }
q16848
application_unauthenticated
train
def application_unauthenticated(request, token, state=None, label=None): """ An somebody is trying to access an application. """ application = base.get_application(secret_token=token) if application.expires < datetime.datetime.now(): return render( template_name='kgapplications/common_ex...
python
{ "resource": "" }
q16849
get_institute_usage
train
def get_institute_usage(institute, start, end): """Return a tuple of cpu hours and number of jobs for an institute for a given period Keyword arguments: institute -- start -- start date end -- end date """ try: cache = InstituteCache.objects.get( institute=institute,...
python
{ "resource": "" }
q16850
get_project_usage
train
def get_project_usage(project, start, end): """Return a tuple of cpu hours and number of jobs for a project for a given period Keyword arguments: project -- start -- start date end -- end date """ try: cache = ProjectCache.objects.get( project=project, date=datetime...
python
{ "resource": "" }
q16851
get_person_usage
train
def get_person_usage(person, project, start, end): """Return a tuple of cpu hours and number of jobs for a person in a specific project Keyword arguments: person -- project -- The project the usage is from start -- start date end -- end date """ try: cache = PersonCache.obje...
python
{ "resource": "" }
q16852
get_machine_usage
train
def get_machine_usage(machine, start, end): """Return a tuple of cpu hours and number of jobs for a machine for a given period Keyword arguments: machine -- start -- start date end -- end date """ try: cache = MachineCache.objects.get( machine=machine, date=datetim...
python
{ "resource": "" }
q16853
get_machine_category_usage
train
def get_machine_category_usage(start, end): """Return a tuple of cpu hours and number of jobs for a given period Keyword arguments: start -- start date end -- end date """ cache = MachineCategoryCache.objects.get( date=datetime.date.today(), start=start, end=end) retur...
python
{ "resource": "" }
q16854
get_applicant_from_email
train
def get_applicant_from_email(email): """ Get applicant from email address. If the person exists, return (person, True) If multiple matches, return (None, True) Otherwise create applicant and return (applicant, False) """ try: applicant = Person.active.get(email=email) exis...
python
{ "resource": "" }
q16855
_send_invitation
train
def _send_invitation(request, project): """ The logged in project leader OR administrator wants to invite somebody. """ form = forms.InviteUserApplicationForm(request.POST or None) if request.method == 'POST': if form.is_valid(): email = form.cleaned_data['email'] applic...
python
{ "resource": "" }
q16856
send_invitation
train
def send_invitation(request, project_id=None): """ The logged in project leader wants to invite somebody to their project. """ project = None if project_id is not None: project = get_object_or_404(Project, id=project_id) if project is None: if not is_admin(request): re...
python
{ "resource": "" }
q16857
new_application
train
def new_application(request): """ A new application by a user to start a new project. """ # Note default kgapplications/index.html will display error if user logged # in. if not settings.ALLOW_REGISTRATIONS: return render( template_name='kgapplications/project_common_disabled.html', ...
python
{ "resource": "" }
q16858
_get_ldflags
train
def _get_ldflags(): """Determine the correct link flags. This attempts dummy compiles similar to how autotools does feature detection. """ # windows gcc does not support linking with unresolved symbols if sys.platform == 'win32': # pragma: no cover (windows) prefix = getattr(sys, 'real_pre...
python
{ "resource": "" }
q16859
get_penalty_model
train
def get_penalty_model(specification): """Factory function for penaltymodel_maxgap. Args: specification (penaltymodel.Specification): The specification for the desired penalty model. Returns: :class:`penaltymodel.PenaltyModel`: Penalty model with the given specification. Ra...
python
{ "resource": "" }
q16860
insert_feasible_configurations
train
def insert_feasible_configurations(cur, feasible_configurations, encoded_data=None): """Insert a group of feasible configurations into the cache. Args: cur (:class:`sqlite3.Cursor`): An sqlite3 cursor. This function is meant to be run within a :obj:`with` statement. feasible_configu...
python
{ "resource": "" }
q16861
_decode_config
train
def _decode_config(c, num_variables): """inverse of _serialize_config, always converts to spin.""" def bits(c): n = 1 << (num_variables - 1) for __ in range(num_variables): yield 1 if c & n else -1 n >>= 1 return tuple(bits(c))
python
{ "resource": "" }
q16862
insert_ising_model
train
def insert_ising_model(cur, nodelist, edgelist, linear, quadratic, offset, encoded_data=None): """Insert an Ising model into the cache. Args: cur (:class:`sqlite3.Cursor`): An sqlite3 cursor. This function is meant to be run within a :obj:`with` statement. nodelist (list): The nodes...
python
{ "resource": "" }
q16863
_serialize_linear_biases
train
def _serialize_linear_biases(linear, nodelist): """Serializes the linear biases. Args: linear: a interable object where linear[v] is the bias associated with v. nodelist (list): an ordered iterable containing the nodes. Returns: str: base 64 encoded string of little end...
python
{ "resource": "" }
q16864
_serialize_quadratic_biases
train
def _serialize_quadratic_biases(quadratic, edgelist): """Serializes the quadratic biases. Args: quadratic (dict): a dict of the form {edge1: bias1, ...} where each edge is of the form (node1, node2). edgelist (list): a list of the form [(node1, node2), ...]. Returns: st...
python
{ "resource": "" }
q16865
iter_ising_model
train
def iter_ising_model(cur): """Iterate over all of the Ising models in the cache. Args: cur (:class:`sqlite3.Cursor`): An sqlite3 cursor. This function is meant to be run within a :obj:`with` statement. Yields: tuple: A 5-tuple consisting of: list: The nodelist for ...
python
{ "resource": "" }
q16866
_decode_linear_biases
train
def _decode_linear_biases(linear_string, nodelist): """Inverse of _serialize_linear_biases. Args: linear_string (str): base 64 encoded string of little endian 8 byte floats, one for each of the nodes in nodelist. nodelist (list): list of the form [node1, node2, ...]. Returns: ...
python
{ "resource": "" }
q16867
_decode_quadratic_biases
train
def _decode_quadratic_biases(quadratic_string, edgelist): """Inverse of _serialize_quadratic_biases Args: quadratic_string (str) : base 64 encoded string of little endian 8 byte floats, one for each of the edges. edgelist (list): a list of edges of the form [(node1, node2), ...]. ...
python
{ "resource": "" }
q16868
insert_penalty_model
train
def insert_penalty_model(cur, penalty_model): """Insert a penalty model into the database. Args: cur (:class:`sqlite3.Cursor`): An sqlite3 cursor. This function is meant to be run within a :obj:`with` statement. penalty_model (:class:`penaltymodel.PenaltyModel`): A penalty ...
python
{ "resource": "" }
q16869
PenaltyModel.from_specification
train
def from_specification(cls, specification, model, classical_gap, ground_energy): """Construct a PenaltyModel from a Specification. Args: specification (:class:`.Specification`): A specification that was used to generate the model. model (:class:`dimod.BinaryQuadr...
python
{ "resource": "" }
q16870
get_penalty_model
train
def get_penalty_model(specification, database=None): """Factory function for penaltymodel_cache. Args: specification (penaltymodel.Specification): The specification for the desired penalty model. database (str, optional): The path to the desired sqlite database file. If ...
python
{ "resource": "" }
q16871
cache_penalty_model
train
def cache_penalty_model(penalty_model, database=None): """Caching function for penaltymodel_cache. Args: penalty_model (:class:`penaltymodel.PenaltyModel`): Penalty model to be cached. database (str, optional): The path to the desired sqlite database file. If None, will ...
python
{ "resource": "" }
q16872
get_penalty_model
train
def get_penalty_model(specification): """Retrieve a PenaltyModel from one of the available factories. Args: specification (:class:`.Specification`): The specification for the desired PenaltyModel. Returns: :class:`.PenaltyModel`/None: A PenaltyModel as returned by the h...
python
{ "resource": "" }
q16873
iter_factories
train
def iter_factories(): """Iterate through all factories identified by the factory entrypoint. Yields: function: A function that accepts a :class:`.Specification` and returns a :class:`.PenaltyModel`. """ # retrieve all of the factories with factories = (entry.load() for entry in ite...
python
{ "resource": "" }
q16874
generate_bqm
train
def generate_bqm(graph, table, decision, linear_energy_ranges=None, quadratic_energy_ranges=None, min_classical_gap=2, precision=7, max_decision=8, max_variables=10, return_auxiliary=False): """Get a binary quadratic model with specific ground states. Args: ...
python
{ "resource": "" }
q16875
get_penalty_model
train
def get_penalty_model(specification): """Factory function for penaltymodel-lp. Args: specification (penaltymodel.Specification): The specification for the desired penalty model. Returns: :class:`penaltymodel.PenaltyModel`: Penalty model with the given specification. Raises...
python
{ "resource": "" }
q16876
get_item
train
def get_item(dictionary, tuple_key, default_value): """Grab values from a dictionary using an unordered tuple as a key. Dictionary should not contain None, 0, or False as dictionary values. Args: dictionary: Dictionary that uses two-element tuple as keys tuple_key: Unordered tuple of two e...
python
{ "resource": "" }
q16877
limitReal
train
def limitReal(x, max_denominator=1000000): """Creates an pysmt Real constant from x. Args: x (number): A number to be cast to a pysmt constant. max_denominator (int, optional): The maximum size of the denominator. Default 1000000. Returns: A Real constant with the given...
python
{ "resource": "" }
q16878
Theta.from_graph
train
def from_graph(cls, graph, linear_energy_ranges, quadratic_energy_ranges): """Create Theta from a graph and energy ranges. Args: graph (:obj:`networkx.Graph`): Provides the structure for Theta. linear_energy_ranges (dict): A dict of the form {v: ...
python
{ "resource": "" }
q16879
Theta.to_bqm
train
def to_bqm(self, model): """Given a pysmt model, return a bqm. Adds the values of the biases as determined by the SMT solver to a bqm. Args: model: A pysmt model. Returns: :obj:`dimod.BinaryQuadraticModel` """ linear = ((v, float(model.get_py_v...
python
{ "resource": "" }
q16880
SpinTimes
train
def SpinTimes(spin, bias): """Define our own multiplication for bias times spins. This allows for cleaner log code as well as value checking. Args: spin (int): -1 or 1 bias (:class:`pysmt.shortcuts.Symbol`): The bias Returns: spins * bias """ if not isinstance(spin, in...
python
{ "resource": "" }
q16881
_elimination_trees
train
def _elimination_trees(theta, decision_variables): """From Theta and the decision variables, determine the elimination order and the induced trees. """ # auxiliary variables are any variables that are not decision auxiliary_variables = set(n for n in theta.linear if n not in decision_variables) ...
python
{ "resource": "" }
q16882
Table.energy_upperbound
train
def energy_upperbound(self, spins): """A formula for an upper bound on the energy of Theta with spins fixed. Args: spins (dict): Spin values for a subset of the variables in Theta. Returns: Formula that upper bounds the energy with spins fixed. """ subt...
python
{ "resource": "" }
q16883
Table.energy
train
def energy(self, spins, break_aux_symmetry=True): """A formula for the exact energy of Theta with spins fixed. Args: spins (dict): Spin values for a subset of the variables in Theta. break_aux_symmetry (bool, optional): Default True. If True, break the aux variab...
python
{ "resource": "" }
q16884
Table.message
train
def message(self, tree, spins, subtheta, auxvars): """Determine the energy of the elimination tree. Args: tree (dict): The current elimination tree spins (dict): The current fixed spins subtheta (dict): Theta with spins fixed. auxvars (dict): The auxiliar...
python
{ "resource": "" }
q16885
Table.message_upperbound
train
def message_upperbound(self, tree, spins, subtheta): """Determine an upper bound on the energy of the elimination tree. Args: tree (dict): The current elimination tree spins (dict): The current fixed spins subtheta (dict): Theta with spins fixed. Returns: ...
python
{ "resource": "" }
q16886
Table.set_energy
train
def set_energy(self, spins, target_energy): """Set the energy of Theta with spins fixed to target_energy. Args: spins (dict): Spin values for a subset of the variables in Theta. target_energy (float): The desired energy for Theta with spins fixed. Notes: Add...
python
{ "resource": "" }
q16887
PandABlocksManagerController._poll_loop
train
def _poll_loop(self): """At self.poll_period poll for changes""" next_poll = time.time() while True: next_poll += self._poll_period timeout = next_poll - time.time() if timeout < 0: timeout = 0 try: return self._stop...
python
{ "resource": "" }
q16888
camel_to_title
train
def camel_to_title(name): """Takes a camelCaseFieldName and returns an Title Case Field Name Args: name (str): E.g. camelCaseFieldName Returns: str: Title Case converted name. E.g. Camel Case Field Name """ split = re.findall(r"[A-Z]?[a-z0-9]+|[A-Z]+(?=[A-Z]|$)", name) ret = " ...
python
{ "resource": "" }
q16889
snake_to_camel
train
def snake_to_camel(name): """Takes a snake_field_name and returns a camelCaseFieldName Args: name (str): E.g. snake_field_name or SNAKE_FIELD_NAME Returns: str: camelCase converted name. E.g. capsFieldName """ ret = "".join(x.title() for x in name.split("_")) ret = ret[0].lower...
python
{ "resource": "" }
q16890
Serializable.from_dict
train
def from_dict(cls, d, ignore=()): """Create an instance from a serialized version of cls Args: d(dict): Endpoints of cls to set ignore(tuple): Keys to ignore Returns: Instance of this class """ filtered = {} for k, v in d.items(): ...
python
{ "resource": "" }
q16891
Serializable.lookup_subclass
train
def lookup_subclass(cls, d): """Look up a class based on a serialized dictionary containing a typeid Args: d (dict): Dictionary with key "typeid" Returns: Serializable subclass """ try: typeid = d["typeid"] except KeyError: ...
python
{ "resource": "" }
q16892
Process.start
train
def start(self, timeout=None): """Start the process going Args: timeout (float): Maximum amount of time to wait for each spawned process. None means forever """ assert self.state == STOPPED, "Process already started" self.state = STARTING shou...
python
{ "resource": "" }
q16893
Process.stop
train
def stop(self, timeout=None): """Stop the process and wait for it to finish Args: timeout (float): Maximum amount of time to wait for each spawned object. None means forever """ assert self.state == STARTED, "Process not started" self.state = STOPPING...
python
{ "resource": "" }
q16894
Process.spawn
train
def spawn(self, function, *args, **kwargs): # type: (Callable[..., Any], *Any, **Any) -> Spawned """Runs the function in a worker thread, returning a Result object Args: function: Function to run args: Positional arguments to run the function with kwargs: Key...
python
{ "resource": "" }
q16895
Process.add_controller
train
def add_controller(self, controller, timeout=None): # type: (Controller, float) -> None """Add a controller to be hosted by this process Args: controller (Controller): Its controller timeout (float): Maximum amount of time to wait for each spawned object....
python
{ "resource": "" }
q16896
Process.block_view
train
def block_view(self, mri): # type: (str) -> Block """Get a Block view from a Controller with given mri""" controller = self.get_controller(mri) block = controller.block_view() return block
python
{ "resource": "" }
q16897
BasicController.update_title
train
def update_title(self, _, info): # type: (object, TitleInfo) -> None """Set the label of the Block Meta object""" with self._lock: self._block.meta.set_label(info.title)
python
{ "resource": "" }
q16898
BasicController.update_health
train
def update_health(self, reporter, info): # type: (object, HealthInfo) -> None """Set the health attribute. Called from part""" with self.changes_squashed: alarm = info.alarm if alarm.is_ok(): self._faults.pop(reporter, None) else: ...
python
{ "resource": "" }
q16899
PandABlocksMaker.make_parts_for
train
def make_parts_for(self, field_name, field_data): """Create the relevant parts for this field Args: field_name (str): Short field name, e.g. VAL field_data (FieldData): Field data object """ typ = field_data.field_type subtyp = field_data.field_subtype ...
python
{ "resource": "" }