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meta_information
dict
q276800
highlight_info
test
def highlight_info(ctx, style): """Outputs the CSS which can be customized for highlighted code""" click.secho("The following styles are available to choose from:", fg="green") click.echo(list(pygments.styles.get_all_styles())) click.echo() click.secho( f'The following CSS for the "{style}" ...
python
{ "resource": "" }
q276801
Polygon._draw_mainlayer
test
def _draw_mainlayer(self, gc, view_bounds=None, mode="default"): """ Draws a closed polygon """ gc.save_state() try: # self._draw_bounds(gc) if len(self.points) >= 2: # Set the drawing parameters. gc.set_fill_color(self.pen.fill_color_) ...
python
{ "resource": "" }
q276802
Polygon.is_in
test
def is_in(self, point_x, point_y): """ Test if a point is within this polygonal region """ point_array = array(((point_x, point_y),)) vertices = array(self.points) winding = self.inside_rule == "winding" result = points_in_polygon(point_array, vertices, winding) return r...
python
{ "resource": "" }
q276803
BSpline._draw_mainlayer
test
def _draw_mainlayer(self, gc, view_bounds=None, mode="default"): """ Draws the Bezier component """ if not self.points: return gc.save_state() try: gc.set_fill_color(self.pen.fill_color_) gc.set_line_width(self.pen.line_width) gc.set_stroke_color(sel...
python
{ "resource": "" }
q276804
DatabaseExtension._handle_event
test
def _handle_event(self, event, *args, **kw): """Broadcast an event to the database connections registered.""" for engine in self.engines.values(): if hasattr(engine, event): getattr(engine, event)(*args, **kw)
python
{ "resource": "" }
q276805
Worker.run
test
def run(self): """ Method that gets run when the Worker thread is started. When there's an item in in_queue, it takes it out, passes it to func as an argument, and puts the result in out_queue. """ while not self.stopper.is_set(): try: item =...
python
{ "resource": "" }
q276806
Pager.get_full_page_url
test
def get_full_page_url(self, page_number, scheme=None): """Get the full, external URL for this page, optinally with the passed in URL scheme""" args = dict( request.view_args, _external=True, ) if scheme is not None: args['_scheme'] = scheme ...
python
{ "resource": "" }
q276807
Pager.render_prev_next_links
test
def render_prev_next_links(self, scheme=None): """Render the rel=prev and rel=next links to a Markup object for injection into a template""" output = '' if self.has_prev: output += '<link rel="prev" href="{}" />\n'.format(self.get_full_page_url(self.prev, scheme=scheme)) ...
python
{ "resource": "" }
q276808
Pager.render_seo_links
test
def render_seo_links(self, scheme=None): """Render the rel=canonical, rel=prev and rel=next links to a Markup object for injection into a template""" out = self.render_prev_next_links(scheme=scheme) if self.total_pages == 1: out += self.render_canonical_link(scheme=scheme) ...
python
{ "resource": "" }
q276809
_content_type_matches
test
def _content_type_matches(candidate, pattern): """Is ``candidate`` an exact match or sub-type of ``pattern``?""" def _wildcard_compare(type_spec, type_pattern): return type_pattern == '*' or type_spec == type_pattern return ( _wildcard_compare(candidate.content_type, pattern.content_type) a...
python
{ "resource": "" }
q276810
select_content_type
test
def select_content_type(requested, available): """Selects the best content type. :param requested: a sequence of :class:`.ContentType` instances :param available: a sequence of :class:`.ContentType` instances that the server is capable of producing :returns: the selected content type (from ``a...
python
{ "resource": "" }
q276811
rewrite_url
test
def rewrite_url(input_url, **kwargs): """ Create a new URL from `input_url` with modifications applied. :param str input_url: the URL to modify :keyword str fragment: if specified, this keyword sets the fragment portion of the URL. A value of :data:`None` will remove the fragment port...
python
{ "resource": "" }
q276812
remove_url_auth
test
def remove_url_auth(url): """ Removes the user & password and returns them along with a new url. :param str url: the URL to sanitize :return: a :class:`tuple` containing the authorization portion and the sanitized URL. The authorization is a simple user & password :class:`tuple`. ...
python
{ "resource": "" }
q276813
_create_url_identifier
test
def _create_url_identifier(user, password): """ Generate the user+password portion of a URL. :param str user: the user name or :data:`None` :param str password: the password or :data:`None` """ if user is not None: user = parse.quote(user.encode('utf-8'), safe=USERINFO_SAFE_CHARS) ...
python
{ "resource": "" }
q276814
_normalize_host
test
def _normalize_host(host, enable_long_host=False, encode_with_idna=None, scheme=None): """ Normalize a host for a URL. :param str host: the host name to normalize :keyword bool enable_long_host: if this keyword is specified and it is :data:`True`, then the host name length ...
python
{ "resource": "" }
q276815
discover_modules
test
def discover_modules(directory): """ Attempts to list all of the modules and submodules found within a given directory tree. This function searches the top-level of the directory tree for potential python modules and returns a list of candidate names. **Note:** This function returns a list of strin...
python
{ "resource": "" }
q276816
rdiscover_modules
test
def rdiscover_modules(directory): """ Attempts to list all of the modules and submodules found within a given directory tree. This function recursively searches the directory tree for potential python modules and returns a list of candidate names. **Note:** This function returns a list of strings r...
python
{ "resource": "" }
q276817
rlist_modules
test
def rlist_modules(mname): """ Attempts to the submodules under a module recursively. This function works for modules located in the default path as well as extended paths via the sys.meta_path hooks. This function carries the expectation that the hidden module variable '__path__' has been set c...
python
{ "resource": "" }
q276818
list_classes
test
def list_classes(mname, cls_filter=None): """ Attempts to list all of the classes within a specified module. This function works for modules located in the default path as well as extended paths via the sys.meta_path hooks. If a class filter is set, it will be called with each class as its para...
python
{ "resource": "" }
q276819
rlist_classes
test
def rlist_classes(module, cls_filter=None): """ Attempts to list all of the classes within a given module namespace. This method, unlike list_classes, will recurse into discovered submodules. If a type filter is set, it will be called with each class as its parameter. This filter's return value...
python
{ "resource": "" }
q276820
ensure_dir
test
def ensure_dir(path): """Ensure that a needed directory exists, creating it if it doesn't""" try: log.info('Ensuring directory exists: %s' % path) os.makedirs(path) except OSError: if not os.path.isdir(path): raise
python
{ "resource": "" }
q276821
AzureStorageBroker.put_text
test
def put_text(self, key, contents): """Store the given text contents so that they are later retrievable by the given key.""" self._blobservice.create_blob_from_text( self.uuid, key, contents )
python
{ "resource": "" }
q276822
luhn_check
test
def luhn_check(card_number): """ checks to make sure that the card passes a luhn mod-10 checksum """ sum = 0 num_digits = len(card_number) oddeven = num_digits & 1 for count in range(0, num_digits): digit = int(card_number[count]) if not ((count & 1) ^ oddeven): digit *...
python
{ "resource": "" }
q276823
get_git_version
test
def get_git_version(): """ Return the git hash as a string. Apparently someone got this from numpy's setup.py. It has since been modified a few times. """ # Return the git revision as a string # copied from numpy setup.py def _minimal_ext_cmd(cmd): # construct minimal environmen...
python
{ "resource": "" }
q276824
ModuleLoader.load_module
test
def load_module(self, module_name): """ Loads a module's code and sets the module's expected hidden variables. For more information on these variables and what they are for, please see PEP302. :param module_name: the full name of the module to load """ if module_...
python
{ "resource": "" }
q276825
ModuleFinder.add_path
test
def add_path(self, path): """ Adds a path to search through when attempting to look up a module. :param path: the path the add to the list of searchable paths """ if path not in self.paths: self.paths.append(path)
python
{ "resource": "" }
q276826
ModuleFinder.find_module
test
def find_module(self, module_name, path=None): """ Searches the paths for the required module. :param module_name: the full name of the module to find :param path: set to None when the module in being searched for is a top-level module - otherwise this is set to ...
python
{ "resource": "" }
q276827
split_line
test
def split_line(line, min_line_length=30, max_line_length=100): """ This is designed to work with prettified output from Beautiful Soup which indents with a single space. :param line: The line to split :param min_line_length: The minimum desired line length :param max_line_length: The maximum desire...
python
{ "resource": "" }
q276828
remove_namespaces
test
def remove_namespaces(root): """Call this on an lxml.etree document to remove all namespaces""" for elem in root.getiterator(): if not hasattr(elem.tag, 'find'): continue i = elem.tag.find('}') if i >= 0: elem.tag = elem.tag[i + 1:] objectify.deannotate(root...
python
{ "resource": "" }
q276829
VersionReleaseChecks.consistency
test
def consistency(self, desired_version=None, include_package=False, strictness=None): """Checks that the versions are consistent Parameters ---------- desired_version: str optional; the version that all of these should match include_package: bool ...
python
{ "resource": "" }
q276830
Rule.from_yaml
test
def from_yaml(cls, **kwargs): """Creates a new instance of a rule in relation to the config file. This updates the dictionary of the class with the added details, which allows for flexibility in the configuation file. Only called when parsing the default configuation file. """ ...
python
{ "resource": "" }
q276831
Rule.merge
test
def merge(self, new_dict): """Merges a dictionary into the Rule object.""" actions = new_dict.pop("actions") for action in actions: self.add_action(action) self.__dict__.update(new_dict)
python
{ "resource": "" }
q276832
Rule.execute_actions
test
def execute_actions(self, cwd): """Iterates over the actions and executes them in order.""" self._execute_globals(cwd) for action in self.actions: logger.info("executing {}".format(action)) p = subprocess.Popen(action, shell=True, cwd=cwd) p.wait()
python
{ "resource": "" }
q276833
CommandSet.from_yaml
test
def from_yaml(cls, defaults, **kwargs): """Creates a new instance of a rule by merging two dictionaries. This allows for independant configuration files to be merged into the defaults.""" # TODO: I hate myself for this. Fix it later mmkay? if "token" not in defaults: ...
python
{ "resource": "" }
q276834
LfsSmtpHandler.add_details
test
def add_details(self, message): """ Add extra details to the message. Separate so that it can be overridden """ msg = message # Try to append Flask request details try: from flask import request url = request.url method = request.metho...
python
{ "resource": "" }
q276835
LfsSmtpHandler.emit
test
def emit(self, record): """ Emit a record. Format the record and send it to the specified addressees. """ try: # First, remove all records from the rate limiter list that are over a minute old now = timetool.unix_time() one_minute_ago = now - ...
python
{ "resource": "" }
q276836
RenditionAwareStructBlock.get_context
test
def get_context(self, value): """Ensure `image_rendition` is added to the global context.""" context = super(RenditionAwareStructBlock, self).get_context(value) context['image_rendition'] = self.rendition.\ image_rendition or 'original' return context
python
{ "resource": "" }
q276837
AttackProtect.log_attempt
test
def log_attempt(self, key): """ Log an attempt against key, incrementing the number of attempts for that key and potentially adding a lock to the lock table """ with self.lock: if key not in self.attempts: self.attempts[key] = 1 else: ...
python
{ "resource": "" }
q276838
Music2Storage.add_to_queue
test
def add_to_queue(self, url): """ Adds an URL to the download queue. :param str url: URL to the music service track """ if self.connection_handler.current_music is None: log.error('Music service is not initialized. URL was not added to queue.') elif self.conn...
python
{ "resource": "" }
q276839
Music2Storage.start_workers
test
def start_workers(self, workers_per_task=1): """ Creates and starts the workers, as well as attaching a handler to terminate them gracefully when a SIGINT signal is received. :param int workers_per_task: Number of workers to create for each task in the pipeline """ if not self....
python
{ "resource": "" }
q276840
Client.set
test
def set(self, k, v): """Add or update a key, value pair to the database""" k = k.lstrip('/') url = '{}/{}'.format(self.endpoint, k) r = requests.put(url, data=str(v)) if r.status_code != 200 or r.json() is not True: raise KVStoreError('PUT returned {}'.format(r.status...
python
{ "resource": "" }
q276841
Client.get
test
def get(self, k, wait=False, wait_index=False, timeout='5m'): """Get the value of a given key""" k = k.lstrip('/') url = '{}/{}'.format(self.endpoint, k) params = {} if wait: params['index'] = wait_index params['wait'] = timeout r = requests.get(ur...
python
{ "resource": "" }
q276842
Client.recurse
test
def recurse(self, k, wait=False, wait_index=None, timeout='5m'): """Recursively get the tree below the given key""" k = k.lstrip('/') url = '{}/{}'.format(self.endpoint, k) params = {} params['recurse'] = 'true' if wait: params['wait'] = timeout if...
python
{ "resource": "" }
q276843
Client.index
test
def index(self, k, recursive=False): """Get the current index of the key or the subtree. This is needed for later creating long polling requests """ k = k.lstrip('/') url = '{}/{}'.format(self.endpoint, k) params = {} if recursive: params['recurse'] = ...
python
{ "resource": "" }
q276844
Client.delete
test
def delete(self, k, recursive=False): """Delete a given key or recursively delete the tree below it""" k = k.lstrip('/') url = '{}/{}'.format(self.endpoint, k) params = {} if recursive: params['recurse'] = '' r = requests.delete(url, params=params) if ...
python
{ "resource": "" }
q276845
plot_heatmap
test
def plot_heatmap(X, y, top_n=10, metric='correlation', method='complete'): ''' Plot heatmap which shows features with classes. :param X: list of dict :param y: labels :param top_n: most important n feature :param metric: metric which will be used for clustering :param method: method which w...
python
{ "resource": "" }
q276846
add_months
test
def add_months(months, timestamp=datetime.datetime.utcnow()): """Add a number of months to a timestamp""" month = timestamp.month new_month = month + months years = 0 while new_month < 1: new_month += 12 years -= 1 while new_month > 12: new_month -= 12 y...
python
{ "resource": "" }
q276847
add_months_to_date
test
def add_months_to_date(months, date): """Add a number of months to a date""" month = date.month new_month = month + months years = 0 while new_month < 1: new_month += 12 years -= 1 while new_month > 12: new_month -= 12 years += 1 # month = timestamp.month ...
python
{ "resource": "" }
q276848
is_christmas_period
test
def is_christmas_period(): """Is this the christmas period?""" now = datetime.date.today() if now.month != 12: return False if now.day < 15: return False if now.day > 27: return False return True
python
{ "resource": "" }
q276849
ConnectionHandler.use_music_service
test
def use_music_service(self, service_name, api_key): """ Sets the current music service to service_name. :param str service_name: Name of the music service :param str api_key: Optional API key if necessary """ try: self.current_music = self.music_services[ser...
python
{ "resource": "" }
q276850
ConnectionHandler.use_storage_service
test
def use_storage_service(self, service_name, custom_path): """ Sets the current storage service to service_name and runs the connect method on the service. :param str service_name: Name of the storage service :param str custom_path: Custom path where to download tracks for local storage ...
python
{ "resource": "" }
q276851
SkUtilsIO.from_csv
test
def from_csv(self, label_column='labels'): ''' Read dataset from csv. ''' df = pd.read_csv(self.path, header=0) X = df.loc[:, df.columns != label_column].to_dict('records') X = map_dict_list(X, if_func=lambda k, v: v and math.isfinite(v)) y = list(df[label_column]...
python
{ "resource": "" }
q276852
SkUtilsIO.from_json
test
def from_json(self): ''' Reads dataset from json. ''' with gzip.open('%s.gz' % self.path, 'rt') if self.gz else open(self.path) as file: return list(map(list, zip(*json.load(file))))[::-1]
python
{ "resource": "" }
q276853
SkUtilsIO.to_json
test
def to_json(self, X, y): ''' Reads dataset to csv. :param X: dataset as list of dict. :param y: labels. ''' with gzip.open('%s.gz' % self.path, 'wt') if self.gz else open( self.path, 'w') as file: json.dump(list(zip(y, X)), file)
python
{ "resource": "" }
q276854
filter_by_label
test
def filter_by_label(X, y, ref_label, reverse=False): ''' Select items with label from dataset. :param X: dataset :param y: labels :param ref_label: reference label :param bool reverse: if false selects ref_labels else eliminates ''' check_reference_label(y, ref_label) return list(z...
python
{ "resource": "" }
q276855
average_by_label
test
def average_by_label(X, y, ref_label): ''' Calculates average dictinary from list of dictionary for give label :param List[Dict] X: dataset :param list y: labels :param ref_label: reference label ''' # TODO: consider to delete defaultdict return defaultdict(float, ...
python
{ "resource": "" }
q276856
feature_importance_report
test
def feature_importance_report(X, y, threshold=0.001, correcting_multiple_hypotesis=True, method='fdr_bh', alpha=0.1, sort_by='pval'): ''...
python
{ "resource": "" }
q276857
SessionData.restore_data
test
def restore_data(self, data_dict): """ Restore the data dict - update the flask session and this object """ session[self._base_key] = data_dict self._data_dict = session[self._base_key]
python
{ "resource": "" }
q276858
_mergedict
test
def _mergedict(a, b): """Recusively merge the 2 dicts. Destructive on argument 'a'. """ for p, d1 in b.items(): if p in a: if not isinstance(d1, dict): continue _mergedict(a[p], d1) else: a[p] = d1 return a
python
{ "resource": "" }
q276859
multi
test
def multi(dispatch_fn, default=None): """A decorator for a function to dispatch on. The value returned by the dispatch function is used to look up the implementation function based on its dispatch key. The dispatch function is available using the `dispatch_fn` function. """ def _inner(*args, ...
python
{ "resource": "" }
q276860
method
test
def method(dispatch_fn, dispatch_key=None): """A decorator for a function implementing dispatch_fn for dispatch_key. If no dispatch_key is specified, the function is used as the default dispacth function. """ def apply_decorator(fn): if dispatch_key is None: # Default case ...
python
{ "resource": "" }
q276861
find_blocks
test
def find_blocks(): """ Auto-discover INSTALLED_APPS registered_blocks.py modules and fail silently when not present. This forces an import on them thereby registering their blocks. This is a near 1-to-1 copy of how django's admin application registers models. """ for app in settings.IN...
python
{ "resource": "" }
q276862
RegisteredBlockStreamFieldRegistry._verify_block
test
def _verify_block(self, block_type, block): """ Verifies a block prior to registration. """ if block_type in self._registry: raise AlreadyRegistered( "A block has already been registered to the {} `block_type` " "in the registry. Either unregis...
python
{ "resource": "" }
q276863
RegisteredBlockStreamFieldRegistry.register_block
test
def register_block(self, block_type, block): """ Registers `block` to `block_type` in the registry. """ self._verify_block(block_type, block) self._registry[block_type] = block
python
{ "resource": "" }
q276864
RegisteredBlockStreamFieldRegistry.unregister_block
test
def unregister_block(self, block_type): """ Unregisters the block associated with `block_type` from the registry. If no block is registered to `block_type`, NotRegistered will raise. """ if block_type not in self._registry: raise NotRegistered( 'There...
python
{ "resource": "" }
q276865
convert_to_mp3
test
def convert_to_mp3(file_name, delete_queue): """ Converts the file associated with the file_name passed into a MP3 file. :param str file_name: Filename of the original file in local storage :param Queue delete_queue: Delete queue to add the original file to after conversion is done :return str: Fil...
python
{ "resource": "" }
q276866
GitReleaseChecks.reasonable_desired_version
test
def reasonable_desired_version(self, desired_version, allow_equal=False, allow_patch_skip=False): """ Determine whether the desired version is a reasonable next version. Parameters ---------- desired_version: str the proposed next ve...
python
{ "resource": "" }
q276867
handle_ssl_redirect
test
def handle_ssl_redirect(): """ Check if a route needs ssl, and redirect it if not. Also redirects back to http for non-ssl routes. Static routes are served as both http and https :return: A response to be returned or None """ if request.endpoint and request.endpoint not in ['static', 'fileman...
python
{ "resource": "" }
q276868
init_celery
test
def init_celery(app, celery): """ Initialise Celery and set up logging :param app: Flask app :param celery: Celery instance """ celery.conf.update(app.config) TaskBase = celery.Task class ContextTask(TaskBase): abstract = True def __call__(self, *args, **kwargs): ...
python
{ "resource": "" }
q276869
queue_email
test
def queue_email(to_addresses, from_address, subject, body, commit=True, html=True, session=None): """ Add a mail to the queue to be sent. WARNING: Commits by default! :param to_addresses: The names and addresses to send the email to, i.e. "Steve<steve@fig14.com>, info@fig14.com" :param from_addres...
python
{ "resource": "" }
q276870
parse_accept
test
def parse_accept(header_value): """Parse an HTTP accept-like header. :param str header_value: the header value to parse :return: a :class:`list` of :class:`.ContentType` instances in decreasing quality order. Each instance is augmented with the associated quality as a ``float`` property ...
python
{ "resource": "" }
q276871
parse_cache_control
test
def parse_cache_control(header_value): """ Parse a `Cache-Control`_ header, returning a dictionary of key-value pairs. Any of the ``Cache-Control`` parameters that do not have directives, such as ``public`` or ``no-cache`` will be returned with a value of ``True`` if they are set in the header. ...
python
{ "resource": "" }
q276872
parse_content_type
test
def parse_content_type(content_type, normalize_parameter_values=True): """Parse a content type like header. :param str content_type: the string to parse as a content type :param bool normalize_parameter_values: setting this to ``False`` will enable strict RFC2045 compliance in which content...
python
{ "resource": "" }
q276873
parse_forwarded
test
def parse_forwarded(header_value, only_standard_parameters=False): """ Parse RFC7239 Forwarded header. :param str header_value: value to parse :keyword bool only_standard_parameters: if this keyword is specified and given a *truthy* value, then a non-standard parameter name will result ...
python
{ "resource": "" }
q276874
parse_list
test
def parse_list(value): """ Parse a comma-separated list header. :param str value: header value to split into elements :return: list of header elements as strings """ segments = _QUOTED_SEGMENT_RE.findall(value) for segment in segments: left, match, right = value.partition(segment) ...
python
{ "resource": "" }
q276875
_parse_parameter_list
test
def _parse_parameter_list(parameter_list, normalized_parameter_values=_DEF_PARAM_VALUE, normalize_parameter_names=False, normalize_parameter_values=True): """ Parse a named parameter list in the "common" format. :param parameter_...
python
{ "resource": "" }
q276876
resize_image_to_fit_width
test
def resize_image_to_fit_width(image, dest_w): """ Resize and image to fit the passed in width, keeping the aspect ratio the same :param image: PIL.Image :param dest_w: The desired width """ scale_factor = dest_w / image.size[0] dest_h = image.size[1] * scale_factor scaled_image = i...
python
{ "resource": "" }
q276877
ParameterParser.add_value
test
def add_value(self, name, value): """ Add a new value to the list. :param str name: name of the value that is being parsed :param str value: value that is being parsed :raises ietfparse.errors.MalformedLinkValue: if *strict mode* is enabled and a validation error ...
python
{ "resource": "" }
q276878
Youtube.download
test
def download(self, url): """ Downloads a MP4 or WebM file that is associated with the video at the URL passed. :param str url: URL of the video to be downloaded :return str: Filename of the file in local storage """ try: yt = YouTube(url) except Rege...
python
{ "resource": "" }
q276879
GoogleDrive.connect
test
def connect(self): """Creates connection to the Google Drive API, sets the connection attribute to make requests, and creates the Music folder if it doesn't exist.""" SCOPES = 'https://www.googleapis.com/auth/drive' store = file.Storage('drive_credentials.json') creds = store.get() ...
python
{ "resource": "" }
q276880
GoogleDrive.upload
test
def upload(self, file_name): """ Uploads the file associated with the file_name passed to Google Drive in the Music folder. :param str file_name: Filename of the file to be uploaded :return str: Original filename passed as an argument (in order for the worker to send it to the delete qu...
python
{ "resource": "" }
q276881
LocalStorage.connect
test
def connect(self): """Initializes the connection attribute with the path to the user home folder's Music folder, and creates it if it doesn't exist.""" if self.music_folder is None: music_folder = os.path.join(os.path.expanduser('~'), 'Music') if not os.path.exists(music_folder)...
python
{ "resource": "" }
q276882
RunParameters.write_sky_params_to_file
test
def write_sky_params_to_file(self): """Writes the params to file that skytool_Free needs to generate the sky radiance distribution.""" inp_file = self.sky_file + '_params.txt' lg.info('Writing Inputs to file : ' + inp_file) f = open(inp_file, 'w') f.write('verbose= ' + str(sel...
python
{ "resource": "" }
q276883
RunParameters.update_filenames
test
def update_filenames(self): """Does nothing currently. May not need this method""" self.sky_file = os.path.abspath(os.path.join(os.path.join(self.input_path, 'sky_files'), 'sky_' + self.sky_state + '_z' + str( ...
python
{ "resource": "" }
q276884
BioOpticalParameters.read_aphi_from_file
test
def read_aphi_from_file(self, file_name): """Read the phytoplankton absorption file from a csv formatted file :param file_name: filename and path of the csv file """ lg.info('Reading ahpi absorption') try: self.a_phi = self._read_iop_from_file(file_name) exce...
python
{ "resource": "" }
q276885
BioOpticalParameters.scale_aphi
test
def scale_aphi(self, scale_parameter): """Scale the spectra by multiplying by linear scaling factor :param scale_parameter: Linear scaling factor """ lg.info('Scaling a_phi by :: ' + str(scale_parameter)) try: self.a_phi = self.a_phi * scale_parameter except:...
python
{ "resource": "" }
q276886
BioOpticalParameters.read_pure_water_absorption_from_file
test
def read_pure_water_absorption_from_file(self, file_name): """Read the pure water absorption from a csv formatted file :param file_name: filename and path of the csv file """ lg.info('Reading water absorption from file') try: self.a_water = self._read_iop_from_file(f...
python
{ "resource": "" }
q276887
BioOpticalParameters.read_pure_water_scattering_from_file
test
def read_pure_water_scattering_from_file(self, file_name): """Read the pure water scattering from a csv formatted file :param file_name: filename and path of the csv file """ lg.info('Reading water scattering from file') try: self.b_water = self._read_iop_from_file(f...
python
{ "resource": "" }
q276888
BioOpticalParameters._read_iop_from_file
test
def _read_iop_from_file(self, file_name): """ Generic IOP reader that interpolates the iop to the common wavelengths defined in the constructor :param file_name: filename and path of the csv file :returns interpolated iop """ lg.info('Reading :: ' + file_name + ' :: and ...
python
{ "resource": "" }
q276889
BioOpticalParameters._write_iop_to_file
test
def _write_iop_to_file(self, iop, file_name): """Generic iop file writer :param iop numpy array to write to file :param file_name the file and path to write the IOP to """ lg.info('Writing :: ' + file_name) f = open(file_name, 'w') for i in scipy.nditer(iop): ...
python
{ "resource": "" }
q276890
BioOpticalParameters.build_b
test
def build_b(self, scattering_fraction=0.01833): """Calculates the total scattering from back-scattering :param scattering_fraction: the fraction of back-scattering to total scattering default = 0.01833 b = ( bb[sea water] + bb[p] ) /0.01833 """ lg.info('Building b with scatteri...
python
{ "resource": "" }
q276891
BioOpticalParameters.build_a
test
def build_a(self): """Calculates the total absorption from water, phytoplankton and CDOM a = awater + acdom + aphi """ lg.info('Building total absorption') self.a = self.a_water + self.a_cdom + self.a_phi
python
{ "resource": "" }
q276892
BioOpticalParameters.build_c
test
def build_c(self): """Calculates the total attenuation from the total absorption and total scattering c = a + b """ lg.info('Building total attenuation C') self.c = self.a + self.b
python
{ "resource": "" }
q276893
BioOpticalParameters.build_all_iop
test
def build_all_iop(self): """Meta method that calls all of the build methods in the correct order self.build_a() self.build_bb() self.build_b() self.build_c() """ lg.info('Building all b and c from IOPs') self.build_a() self.build_bb() sel...
python
{ "resource": "" }
q276894
BatchRun.batch_parameters
test
def batch_parameters(self, saa, sza, p, x, y, g, s, z): """Takes lists for parameters and saves them as class properties :param saa: <list> Sun Azimuth Angle (deg) :param sza: <list> Sun Zenith Angle (deg) :param p: <list> Phytoplankton linear scalling factor :param x: <list> Sc...
python
{ "resource": "" }
q276895
FileTools.read_param_file_to_dict
test
def read_param_file_to_dict(file_name): """Loads a text file to a python dictionary using '=' as the delimiter :param file_name: the name and path of the text file """ data = loadtxt(file_name, delimiter='=', dtype=scipy.string0) data_dict = dict(data) for key in data_di...
python
{ "resource": "" }
q276896
HelperMethods.string_to_float_list
test
def string_to_float_list(string_var): """Pull comma separated string values out of a text file and converts them to float list""" try: return [float(s) for s in string_var.strip('[').strip(']').split(', ')] except: return [float(s) for s in string_var.strip('[').strip(']'...
python
{ "resource": "" }
q276897
ReportTools.read_pr_report
test
def read_pr_report(self, filename): """Reads in a PlanarRad generated report Saves the single line reported parameters as a python dictionary :param filename: The name and path of the PlanarRad generated file :returns self.data_dictionary: python dictionary with the key and values from...
python
{ "resource": "" }
q276898
SignalHandler.set_handler
test
def set_handler(self, signals, handler=signal.SIG_DFL): """ Takes a list of signals and sets a handler for them """ for sig in signals: self.log.debug("Creating handler for signal: {0}".format(sig)) signal.signal(sig, handler)
python
{ "resource": "" }
q276899
SignalHandler.pseudo_handler
test
def pseudo_handler(self, signum, frame): """ Pseudo handler placeholder while signal is beind processed """ self.log.warn("Received sigal {0} but system is already busy processing a previous signal, current frame: {1}".format(signum, str(frame)))
python
{ "resource": "" }