task
stringclasses
5 values
input
stringlengths
89
339
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@H]1CN([C@]2(C[NH3+])CCCC2(C)C)CCO1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*][C@H]([8*])c1cccnc1 Fragment 2: [4*][C@@H]([8*])c1ccc(F)cc1 ### Response: CS(=O)(=O)N[C@H](c1ccc(F)cc1)c1cccnc1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*][NH+]1CCOCC1 Fragment 2: [4*]CC[C@@]1([15*])CCC[C@@H](CC)C1 ### Response: CC[C@@H]1CCC[C@@](CC[NH+]2CCOCC2)(C(=O)[O-])C1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. O=C(CC1CCC1)Nc1ccc(N2CCNC2=O)cc1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COc1ccc2c(c1)c(C)c(C(=O)N1CCCC[C@@H]1C[NH+](C)C)n2C ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(cc(O[C@H]2CC[C@@]([NH2+]C3CC3)(C(=O)N)C2)cc1F)F ### Response: NC(=O)[C@]1([NH2+]C2CC2)CC[C@H](Oc2cc(F)cc(F)c2)C1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [16*]c1ccc(F)cc1 Fragment 2: [8*]C[NH2+]C ### Response: C[NH2+]C[C@]1(c2ccc(F)cc2)CCC[C@@H]1C
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]OCC Fragment 2: [1*]C(=O)c1noc2c1COc1ccc(C)cc1-2 ### Response: CCOC(=O)[C@H](C)NC(=O)c1noc2c1COc1ccc(C)cc1-2
functional_group
### Instruction: Does the molecule contain a carboxyl group? Cn1cccc1CN(Cc1cccs1)C(=O)c1ccc(Br)cc1 ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. [NH3+][C@H]1CCC[C@@H]([NH+]2CC[C@@H](c3ccccc3)C2)C1 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1ccccc1COC1CCN(C(=O)NC[C@@H](C)Cn2cccn2)CC1 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. [NH3+]CCCOC1CCN(c2nc3ccccc3o2)CC1 ### Response: 1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COCCOc1cccc(NC(=O)c2ccc(NC=O)cc2)c1 ### Response: 0
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cc(C)c(S(=O)(=O)N2CCC[C@H]2CNC(=O)c2ccc3c(c2)OCO3)c(C)c1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC(C)(C)C(=O)Nc1c[nH]c(=O)[nH]c1=O ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. C[C@@H]1CNCc2c1ncc(c2)C(F)(F)F ### Response: C[C@@H]1CNCc2cc(C(F)(F)F)cnc21
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? N#Cc1ccccc1N1CCN(Cc2ccc([N+](=O)[O-])cc2)CC1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)c1cc(S(=O)(=O)N[5*])ccc1C Fragment 2: [1*]C(=O)c1cc(S([12*])(=O)=O)ccc1C ### Response: Cc1ccc(S(=O)(=O)Nc2ccc(F)cc2)cc1C(=O)N1CCOCC1
canonicalization
### Instruction: Canonicalize the following SMILES string. C(C)C(CC)c1cc(on1)CNC(=O)Nc1cccc(NC(=O)C)c1 ### Response: CCC(CC)c1cc(CNC(=O)Nc2cccc(NC(C)=O)c2)on1
functional_group
### Instruction: Does the molecule contain a amine group? O=C(c1cccc(S(=O)(=O)N2CCOCC2)c1)N(Cc1ccc(F)cc1)Cc1ccco1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. O=C(NCCCC[NH+]1CCC[C@@H](C)C1)N1CCc2c(C1)ccc(c2)F ### Response: C[C@@H]1CCC[NH+](CCCCNC(=O)N2CCc3cc(F)ccc3C2)C1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [8*]CC(=O)[O-] Fragment 2: [1*]C(=O)c1ccccc1[N+](=O)[O-] ### Response: O=C([O-])CC1(NC(=O)c2ccccc2[N+](=O)[O-])CCC1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1nn(Cc2ccccc2)c(Cl)c1/C=C/C(=O)N1CCO[C@@H](C)C1 ### Response: 3
functional_group
### Instruction: Does the molecule contain a halide group? COc1cc(C(=O)N2CCN(c3cccc[nH+]3)CC2)ccc1Oc1ccc(Cl)cc1[N+](=O)[O-] ### Response: Yes
functional_group
### Instruction: Does the molecule contain a phenol group? COCCn1cc(NC(=O)[C@H](C)Oc2ccc(C)cc2Br)cn1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@@H](O)C[C@@H]1CCCN1c1cc(Br)cc(F)c1C(N)=O ### Response: 3
functional_group
### Instruction: Does the molecule contain a amide group? O=C(NC[C@H]1CCCO1)c1cc2scc(Br)c2n1Cc1cccc(F)c1 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)c1nnc2c([16*])c([14*])nn2c1C Fragment 2: [8*]COC ### Response: COCc1nn2c(C)c(C(=O)N3CC[NH+](C)CC3)nnc2c1-c1ccc(OC)cc1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC(=O)Nc1cccc(C(=O)O[C@H](C)C(=O)N2CCc3ccccc32)c1 ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. C(C[C@H](C)O)NC(c1nc(COc2ccc3c(c2)cccn3)oc1)=O ### Response: C[C@H](O)CCNC(=O)c1coc(COc2ccc3ncccc3c2)n1
functional_group
### Instruction: Does the molecule contain a amine group? Cc1ccc(C[C@H](C)NCc2[nH]cc[nH+]2)s1 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N1CCN([5*])CC1 Fragment 2: [12*]S(=O)(=O)c1ccc(OC)cc1 ### Response: COc1ccc(S(=O)(=O)N2CCN(C(C)C)CC2)cc1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCC[C@@H](C(=O)[O-])N1C(=O)/C(=C\c2cn(C)c3ccccc23)SC1=S ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. [C@H]1([C@H]([NH2+]C[C@@H](c2cc(ccc2F)F)O1)C)C ### Response: C[C@H]1[NH2+]C[C@@H](c2cc(F)ccc2F)O[C@@H]1C
canonicalization
### Instruction: Canonicalize the following SMILES string. [S@@](=O)(c1c(scc1)C(=O)[O-])O ### Response: O=C([O-])c1sccc1[S@](=O)O
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC(=O)N[C@@H](c1ccccc1)[C@@H](C)C(=O)c1ccccc1 ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [16*]c1ccccc1F Fragment 2: [11*]Sc1nnc([14*])n1C ### Response: Cn1c(Sc2ccccc2[N+](=O)[O-])nnc1-c1ccccc1F
canonicalization
### Instruction: Canonicalize the following SMILES string. [C@@]([NH3+])(Cc1n(c2c(n1)cccc2)C)(COC)CC ### Response: CC[C@@]([NH3+])(COC)Cc1nc2ccccc2n1C
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc(CC/C([O-])=N/S(=O)(=O)c2ccc3c(c2)OCCO3)cc1F ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. c1cc2c(cc(cc2)C(=O)CSc2n(ccn2)CC)cc1 ### Response: CCn1ccnc1SCC(=O)c1ccc2ccccc2c1
functional_group
### Instruction: Does the molecule contain a ether group? COc1ccccc1NC(=O)[C@H]1CC(=O)N(c2cc(C)cc(C)c2)C1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc(C[C@H](C)C=O)cc1 ### Response: 3
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Oc1ccc(C[NH2+]C[C@H]2CCCC[C@H]2CCl)cc1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]Cc1cc2cccc(OC)c2o1 Fragment 2: [5*][NH+]1CC[C@@H]([N+]2=CCCC2)C1 ### Response: COc1cccc2cc(C[NH+]3CC[C@@H]([N+]4=CCCC4)C3)oc12
canonicalization
### Instruction: Canonicalize the following SMILES string. [C@@H]1(CCCO1)Cn1c([S@](CCc2ccccc2)=O)n[nH]c1=O ### Response: O=c1[nH]nc([S@@](=O)CCc2ccccc2)n1C[C@H]1CCCO1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(cc(NC(C(=O)N[C@@H]2CCC[C@H]2c2ccc(cc2)F)=O)n(C)n1)CCC ### Response: CCCc1cc(NC(=O)C(=O)N[C@@H]2CCC[C@H]2c2ccc(F)cc2)n(C)n1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCCc1cc(=O)oc2cc(OCC(=O)Nc3ccccc3C(C)=O)ccc12 ### Response: 3
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc(/C(C)=N/NC(=O)[C@@H]2C=C(c3ccc4ccccc4c3)N=N2)cc1OC ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N1CC[C@]2(O)CCN([5*])C[C@@H]2C1 Fragment 2: [12*]S(C)(=O)=O ### Response: CS(=O)(=O)N1CC[C@]2(O)CCN(c3ncccn3)C[C@@H]2C1
functional_group
### Instruction: Does the molecule contain a amine group? CCCCC(=O)Nc1nnc(SC[C@H]2[NH+]=c3ccccc3=[NH+]C2=O)s1 ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCOC[C@@H]1CC[NH+](Cc2ccccn2)C1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [6*]C(=O)C(F)(F)F Fragment 2: [13*][C@@H]1NC(=O)N[C@]([13*])(O)[C@H]1[15*] ### Response: O=C1N[C@@H](c2ccc(Cl)cc2Cl)[C@H](C(=O)C(F)(F)F)[C@](O)(c2ccc(Cl)cc2)N1
canonicalization
### Instruction: Canonicalize the following SMILES string. [C@H]1(C(=O)[O-])CC[C@H](CNC(C[NH2+]C)=O)O1 ### Response: C[NH2+]CC(=O)NC[C@H]1CC[C@H](C(=O)[O-])O1
functional_group
### Instruction: Does the molecule contain a ester group? C[C@@H](CC(=O)NNc1nc(-c2ccccc2)no1)NC(=O)C1CCCC1 ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N1CCOCC1 Fragment 2: [1*]C(=O)C[4*] ### Response: Cn1cnnc1SCC(=O)Nc1ccc(S(=O)(=O)N2CCOCC2)cc1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CNc1nc(Cc2ccc(OC)nc2)ns1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a phenol group? CNC(=O)c1ccc(Sc2nnc(-c3cccs3)n2C)c([N+](=O)[O-])c1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. C(C(N(CCC)CCC)=O)Cc1c2ccccc2[nH]c1 ### Response: CCCN(CCC)C(=O)CCc1c[nH]c2ccccc12
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COc1ccc2c(-c3ccccc3)cc(S[C@H](C)C(=O)N3CCNC3=O)nc2c1 ### Response: 3
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@@H](NC(=O)Cc1cccc2ccccc12)C(=O)N1CCN(C/C=C/c2ccccc2)CC1 ### Response: 4
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CCC1=C(C(=O)OC)[C@H](c2cccc(Br)c2)NC(=S)N1 ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@H](c1nc(C(C)(C)C)no1)[S@](=O)Cc1ncn(-c2ccccc2)n1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@@H]1CCC=C2C[C@H]3OC(=O)[C@H](C[NH+]4CCN(C(=O)c5ccco5)CC4)[C@H]3[C@H](O)[C@@]21C ### Response: 3
functional_group
### Instruction: Does the molecule contain a halide group? C[C@H]1OCC[C@H]1C(=O)N1CCO[C@H](C#N)C1 ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [8*]COC Fragment 2: [5*]NCc1ccc([16*])cc1 ### Response: CCc1nn(C)cc1NC(=O)NCc1ccc(COC)cc1
functional_group
### Instruction: Does the molecule contain a amine group? CC(C)(C)CC(C)(C)NC(=O)c1ccc(-n2cnnc2)cc1Cl ### Response: No
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CCOc1ccc([C@H]2CC(c3ccc(F)cc3)=Nc3nc(CCCO)nn32)cc1 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]NC1[C@H](C)CCC[C@@H]1C Fragment 2: [15*]C1[C@H](C)CCC[C@@H]1C ### Response: Cc1cnn(CCCNC(=O)NC2[C@H](C)CCC[C@@H]2C)c1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1ccc(Cl)c(OC(=O)c2ccccc2SCC(N)=O)c1 ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]C(C)(C)[C@@H]([8*])O Fragment 2: [5*][NH+]1CCCC1 ### Response: CC(C)([C@H](O)c1ccc(Cl)s1)[NH+]1CCCC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [12*]S(=O)(=O)C1CC1 Fragment 2: [5*]Nc1cccc(Cl)c1 ### Response: O=C(Nc1cccc(Cl)c1)C1CN(S(=O)(=O)C2CC2)C1
functional_group
### Instruction: Does the molecule contain a carboxyl group? O=C(NC[C@H]1CCc2ccccc2O1)Nc1ccnn1CC1CC1 ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COc1ccc(Cl)cc1CN(C)C(=O)N[C@@H](C)CCSC ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N(C)c1ccccc1 Fragment 2: [1*]C(=O)C[8*] ### Response: CN(c1ccccc1)S(=O)(=O)c1cccc(NC(=O)Cc2csc(N3CCCC3=O)n2)c1
canonicalization
### Instruction: Canonicalize the following SMILES string. Fc1cc(ccc1C(NNC(=O)C(C)(C)CC)=O)Cl ### Response: CCC(C)(C)C(=O)NNC(=O)c1ccc(Cl)cc1F
functional_group
### Instruction: Does the molecule contain a ketone group? CCn1cc[nH+]c1CC(=O)c1ccccc1C ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. n1c(N2CCN(CC2)CC)[nH+]c2ccccc2c1NC[C@@H]1CCCO1 ### Response: CCN1CCN(c2nc(NC[C@@H]3CCCO3)c3ccccc3[nH+]2)CC1
functional_group
### Instruction: Does the molecule contain a phenol group? CCN(C(=O)NC1CC[NH+](C[C@@H](O)COC)CC1)C1CCCC1 ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N([5*])c1nc2ccc(S(C)(=O)=O)cc2s1 Fragment 2: [14*]c1nc2ccc(S(C)(=O)=O)cc2s1 ### Response: CS(=O)(=O)c1ccc2nc(N(CC[NH+]3CCOCC3)C(=O)c3ccc([N+](=O)[O-])cc3)sc2c1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1cccc(C(=O)Nc2ccc(-n3c(C)nc4ncccc4c3=O)cc2)c1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. O=C(c1ccco1)N1CCS[C@]12C(=O)N(Cc1ccccc1Cl)c1ccc(C)cc12 ### Response: Cc1ccc2c(c1)[C@@]1(SCCN1C(=O)c1ccco1)C(=O)N2Cc1ccccc1Cl
functional_group
### Instruction: Does the molecule contain a amide group? C[C@@H](CCCO)NC(=O)N1CCN(c2ncnc3sccc23)CC1 ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@@H]1[C@@H](c2ccccc2)OCCN1S(=O)(=O)c1ccc2c(c1)n(C)c(=O)c(=O)n2C ### Response: 4
canonicalization
### Instruction: Canonicalize the following SMILES string. [C@H]12[C@@H]([NH2+][C@@]([C@@H]1C(=O)N(C2=O)C)(Cc1ccc(O)cc1)C(=O)OC)c1ccc(F)cc1 ### Response: COC(=O)[C@]1(Cc2ccc(O)cc2)[NH2+][C@@H](c2ccc(F)cc2)[C@@H]2C(=O)N(C)C(=O)[C@H]21
ring_counting
### Instruction: Count the five-membered rings in the following molecule. O=C1N[C@@H](C(=O)N2CC=C(c3ccc(Cl)cc3)CC2)CS1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N1CCN([5*])CC1 Fragment 2: [8*]CCC ### Response: CCCn1nc(C)c(C(=O)N2CCN([C@H](C#N)C(C)C)CC2)c1C
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC(C)C1(C[NH2+][C@H](C)c2nccs2)CC1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCOC(=O)C1=C(CN2CCc3c(F)ccc(F)c3C2)NC(=O)N[C@H]1C ### Response: 2
functional_group
### Instruction: Does the molecule contain a phenol group? CC(C)(C)Oc1ccc(C(=O)n2ncc(C#N)c2N)cc1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@H]1CN(CC(=O)Nc2ccc(OC(F)F)cc2)C[C@H](C)O1 ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC(=O)Nc1cccc(-n2nnnc2SCCOc2cccc(C)c2)c1 ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1cnn(-c2ccc(C(=O)N[C@@H]3CC[C@H]([NH+](C)C)C3)cc2)c1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. C(N1CCN(Cc2onc(n2)-c2sccc2)CC1)(C1CCN(S(C)(=O)=O)CC1)=O ### Response: CS(=O)(=O)N1CCC(C(=O)N2CCN(Cc3nc(-c4cccs4)no3)CC2)CC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [9*]n1c([14*])nc2cccnc21 Fragment 2: [1*]C(=O)[C@@H]1CCCCC[NH+]1C ### Response: CCCc1nc2cccnc2n1C1CCN(C(=O)[C@@H]2CCCCC[NH+]2C)CC1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@H]1CCC[C@@H](OCC(=O)OCc2nc(C3CC3)cs2)C1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)C[4*] Fragment 2: [5*]Nc1sccc1C#N ### Response: N#Cc1ccsc1NC(=O)CSC1CCCC1
canonicalization
### Instruction: Canonicalize the following SMILES string. [C@@H]1(NC(=O)NCc2nc(C(C)(C)C)cs2)CCc2c1cccc2O ### Response: CC(C)(C)c1csc(CNC(=O)N[C@@H]2CCc3c(O)cccc32)n1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]Nc1nc([14*])cs1 Fragment 2: [16*]c1ccc(C)cc1C ### Response: Cc1ccc(-c2csc(NC(=O)c3ccc4nncn4c3)n2)c(C)c1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(C(OCc2ccc(Cl)cc2)=O)c(C)onc1-c1ccccc1 ### Response: Cc1onc(-c2ccccc2)c1C(=O)OCc1ccc(Cl)cc1
canonicalization
### Instruction: Canonicalize the following SMILES string. C1C[NH+]([C@@H](C)CNc2cccc(c2C(=O)[O-])F)CCC1 ### Response: C[C@@H](CNc1cccc(F)c1C(=O)[O-])[NH+]1CCCCC1