task
stringclasses
5 values
input
stringlengths
89
339
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]Cc1ccc([16*])cn1 Fragment 2: [4*][C@H](C)c1ccc(F)c(F)c1 ### Response: CCOc1ccc(C[NH+](C)[C@H](C)c2ccc(F)c(F)c2)nc1
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? C[C@@H]1CCCC[C@@H]1NC(=O)c1ccc(Cl)c(S(N)(=O)=O)c1 ### Response: Yes
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1cnn(CCC(=O)N[C@H](C)c2ccc(-n3cccn3)cc2)c1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. O(c1ccc(cc1)CN1C(=O)c2ccccc2C[C@]1(C)C(=O)NC1CCCCCCC1)C ### Response: COc1ccc(CN2C(=O)c3ccccc3C[C@]2(C)C(=O)NC2CCCCCCC2)cc1
functional_group
### Instruction: Does the molecule contain a nitro group? CCOCCN(C)C(=O)N[C@H]1CCN(c2cccc(Cl)c2)C1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1ccccc1NC(=O)COc1ccc(/C=C2\SC(=O)NC2=O)cc1 ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC1(C)C(CNc2ccccc2C(N)=S)C1(C)C ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(ccs1)[C@@](CNc1cnn(C)c(=O)c1Cl)(O)C ### Response: Cn1ncc(NC[C@@](C)(O)c2ccsc2)c(Cl)c1=O
functional_group
### Instruction: Does the molecule contain a aldehyde group? COC[C@@H](O)CN(C)C(=O)c1nc(C2CC2)n2ccccc12 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. n1c(n(c(n1C)=O)C1CCCC1)C1CC[NH+](Cc2ccncc2)CC1 ### Response: Cn1nc(C2CC[NH+](Cc3ccncc3)CC2)n(C2CCCC2)c1=O
canonicalization
### Instruction: Canonicalize the following SMILES string. N(c1c(C)ccc(c1)C)C(=O)[C@@H](C)Nc1cccc(c1)NS(C)(=O)=O ### Response: Cc1ccc(C)c(NC(=O)[C@@H](C)Nc2cccc(NS(C)(=O)=O)c2)c1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C1[C@H]2CCCCN2C(=O)CN1CCc1cccc(F)c1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. C1N(c2ccc(cc2)F)CCN(C(Cn2c(c3cc([N+](=O)[O-])ccc3nc2)=O)=O)C1 ### Response: O=C(Cn1cnc2ccc([N+](=O)[O-])cc2c1=O)N1CCN(c2ccc(F)cc2)CC1
functional_group
### Instruction: Does the molecule contain a sulfonyl group? Cc1cc(C(=O)NC(C)C)ccc1NC(=O)N1CCc2cc(F)ccc2C1 ### Response: No
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CC(C)(C)c1ccc(NC(=O)NCc2nnnn2-c2ccccc2)cc1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CN(Cc1nc(C(F)(F)F)cs1)Cc1cccc(Br)c1O ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(ccccc1CC(=O)OCC)NC(=O)c1cccc(-n2cccc2)c1 ### Response: CCOC(=O)Cc1ccccc1NC(=O)c1cccc(-n2cccc2)c1
functional_group
### Instruction: Does the molecule contain a ether group? CC(C)(C)OC(=O)N1CC[C@H]([S@@](=O)c2cccc(Cl)c2Cl)C1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? Cc1ccc(N2C(=O)NC(=O)/C(=C/Nc3c(C)nn(-c4ccc(C)c(C)c4)c3C)C2=O)cc1C ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(NC(C[C@H]2N=C(N=C2[O-])N/C(N)=N/c2ccc(C)cc2)=O)c(C)ccc1C ### Response: Cc1ccc(/N=C(\N)NC2=N[C@H](CC(=O)Nc3cc(C)ccc3C)C([O-])=N2)cc1
functional_group
### Instruction: Does the molecule contain a sulfonyl group? CC[C@@H](Cc1ccccc1)N(C)C(=O)NCCOC ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COCC[C@@H](C)C(=O)N1CCC[C@@H]1c1cccc(C)c1 ### Response: 4
ring_counting
### Instruction: Count the five-membered rings in the following molecule. N#C/C(=C\Nc1cccc(Br)c1)c1nc(-c2ccc(Cl)cc2)cs1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(C)onc(c1NC(=O)N1CC[C@@H](Oc2cc(ccc2)Cl)C1)CC ### Response: CCc1noc(C)c1NC(=O)N1CC[C@@H](Oc2cccc(Cl)c2)C1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. NC(=O)c1cccc(CC[NH2+]C2C3CC4CC(C3)CC2C4)c1 ### Response: 0
functional_group
### Instruction: Does the molecule contain a ether group? CC(C)[C@]1(C)CC(=O)N(Cc2ncn(-c3ccccc3)n2)C1=O ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCCc1nsc(N[C@@H](C)CCCCl)n1 ### Response: 0
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]NCC(F)(F)F Fragment 2: [1*]C(=O)c1cn(CC)c2nc(C)ccc2c1=O ### Response: CCn1cc(C(=O)Nc2ccc(CC(=O)NCC(F)(F)F)cc2)c(=O)c2ccc(C)nc21
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCOc1ccc(NC(=O)C2CCN(c3[nH]c4ccccc4[nH+]3)CC2)cc1 ### Response: 1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1noc(-c2ccc(C(=O)NNC(=S)N[C@@H](C)C3CC3)cc2)n1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a hydroxyl group? O=C(Nc1cc(C(F)(F)F)ccc1N1CCCC1)N1CCCC[C@@H]1CO ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]NC(=S)NNC(=O)C[8*] Fragment 2: [16*]c1ccccc1 ### Response: O=C(Cc1c(Cl)cccc1Cl)NNC(=S)Nc1ccccc1
canonicalization
### Instruction: Canonicalize the following SMILES string. O=S(N1[C@H]([C@@H]2CCC[C@@H]2O)CCC1)(=O)C[C@@H]1CCCO1 ### Response: O=S(=O)(C[C@@H]1CCCO1)N1CCC[C@H]1[C@@H]1CCC[C@@H]1O
ring_counting
### Instruction: Count the six-membered rings in the following molecule. N#Cc1ccc(F)c(CNC(=O)c2ccnc(OCc3ccccc3)c2)c1 ### Response: 3
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N1CCCC[C@@H]1[13*] Fragment 2: [8*]CS([12*])(=O)=O ### Response: O=S(=O)(CC1CCC1)N1CCCC[C@@H]1c1cc2ccccc2[nH]1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(Nc1cccc(CC[NH+]2CCCC2)c1)[C@H]1OCCc2ccccc21 ### Response: 2
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CC(=O)/C=C(/NNC(=O)c1cccc([N+](=O)[O-])c1)c1ccccc1 ### Response: 0
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? COc1c(C)cccc1C1=N/C(=C\c2ccc([N+](=O)[O-])cc2)C(=O)O1 ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. [NH+]1(C[C@H]([C@@H](O)c2nccn2C)CCC1)CC(=O)N([C@H]1c2ccccc2CCC1)C ### Response: CN(C(=O)C[NH+]1CCC[C@@H]([C@@H](O)c2nccn2C)C1)[C@@H]1CCCc2ccccc21
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cccc(C)c1C(=O)NCC(=O)Nc1cc(Cl)ccc1Cl ### Response: 2
functional_group
### Instruction: Does the molecule contain a ether group? CCCc1cc(NC(=O)c2ccccc2S(C)(=O)=O)n(C)n1 ### Response: No
functional_group
### Instruction: Does the molecule contain a ether group? O=C(NCc1ccccc1)c1ccc(CNC(=O)c2ccc(N3CCCOC3=O)cc2)cc1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCOc1cccnc1-c1nc(-c2ccnc(OC)c2)no1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cn1nccc1CNC(=O)c1cccc(C#N)c1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]NCc1scnc1C Fragment 2: [15*]C1CCCC1 ### Response: Cc1ncsc1CNC(=O)[C@H](C)CC1CCCC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*][NH+](C)C Fragment 2: [5*]Nc1cc(Cl)c(Cl)cc1N ### Response: C[NH+](C)CCCNc1cc(Cl)c(Cl)cc1N
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(c(C(N2CCN(c3c(c(ccc3)C)C)CC2)=O)cc(cc1)S(=O)(N1CCCCCC1)=O)OC ### Response: COc1ccc(S(=O)(=O)N2CCCCCC2)cc1C(=O)N1CCN(c2cccc(C)c2C)CC1
functional_group
### Instruction: Does the molecule contain a thiol group? O=C(NCc1ccccc1F)NC[C@H]1CC[NH+](CC(F)(F)F)C1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1ccc(-c2nnco2)cc1NC(=O)N1CCNC(=O)[C@@H]1C(C)C ### Response: 2
functional_group
### Instruction: Does the molecule contain a ester group? COc1ccc(CNC(=O)c2ccc(Nc3nn4c(=O)c5ccccc5nc4s3)cc2)cc1 ### Response: No
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CC(=O)NC1CCN(C(=O)c2cccc(-c3noc(C4CC4)n3)c2)CC1 ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. O[C@@]1(C(F)(F)F)CN(C(=O)CCCOc2ccccc2)CC1 ### Response: O=C(CCCOc1ccccc1)N1CC[C@](O)(C(F)(F)F)C1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]C[C@H]([8*])O Fragment 2: [4*]Cc1ccccc1 ### Response: O[C@H](C[NH+](Cc1ccccc1)C1CC1)c1ccc(F)cc1
functional_group
### Instruction: Does the molecule contain a aldehyde group? Cc1cc(C(=O)N2CCN([C@H](c3ccccc3)c3ccc(F)cc3)CC2)n(C)n1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C[C@@H]1C[C@@H](c2ccccc2F)[NH+](Cc2ccc(C#N)o2)C1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. C1C[C@@H]2C[C@H]1C[C@H]2C(Nc1ccccc1F)=O ### Response: O=C(Nc1ccccc1F)[C@@H]1C[C@H]2CC[C@@H]1C2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=c1ccc(-c2ccc(S(=O)(=O)NCCC3=CCCCC3)o2)n[nH]1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CN1CCN(C(=O)c2cccc(-c3ccoc3)c2)c2ccccc21 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [16*]c1ccc(F)cc1 Fragment 2: [5*]N1CCC[C@H]1[13*] ### Response: O=C1CC[C@H](C(=O)N2CCC[C@H]2c2ccc(F)cc2)N1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC[NH2+]CCCc1c(C)nn(Cc2ccccc2Br)c1C ### Response: 3
functional_group
### Instruction: Does the molecule contain a amide group? COC(=O)CCOc1ccc(NC(=O)N2C[C@@H](C)CC[C@H]2C)cc1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a amine group? Nc1nc(NS(=O)(=O)c2ccccc2)nn1-c1nc(-c2ccccc2)cs1 ### Response: Yes
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1ccc(-n2ccnc2)c(C(=O)N2CCN(C(=O)c3ccco3)CC2)c1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(C)c(cc(C)n1CCC)-c1csc(NC([C@@H]2CCO[C@H]2C)=O)n1 ### Response: CCCn1c(C)cc(-c2csc(NC(=O)[C@@H]3CCO[C@H]3C)n2)c1C
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC(=O)N1CCN(C(=O)c2cc(-c3cccc(Cl)c3)no2)CC1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a ether group? CC1(C)CSC[C@](C#N)(N2CCCCC2)C1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C([C@H]1CCCN(S(=O)(=O)c2ccc(Br)cc2)C1)N1CCc2ccccc2C1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(c1ccc(Cl)cc1)[C@H]1CCCN(C[C@H]2C=c3ccccc3=[NH+]2)C1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a aldehyde group? COc1ccc(COc2ccc(N(C)S(=O)(=O)c3ccc(F)cc3)cc2)cc1F ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCc1ccc(NC(=O)[C@H](C)OC(=O)c2cnc(C)cn2)cc1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [8*]C(C)(C)C Fragment 2: [3*]OCC ### Response: CCOc1ccc(-c2nnc(NC(=O)c3ccc(C(C)(C)C)cc3)o2)cc1
canonicalization
### Instruction: Canonicalize the following SMILES string. C1CCC(C(NNc2nc([O-])c(nn2)CC)=O)CC1 ### Response: CCc1nnc(NNC(=O)C2CCCCC2)nc1[O-]
functional_group
### Instruction: Does the molecule contain a amide group? COC(=O)CN(C(=O)c1ccc(Cl)cc1)n1c(C)ccc1C ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCN(CC(=O)N[C@H]1CCS(=O)(=O)C1)C(=O)c1cccc(F)c1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. CN(c1nc(nc(n1)N1CCOCC1)C#N)C ### Response: CN(C)c1nc(C#N)nc(N2CCOCC2)n1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[NH+](C)CCN(Cc1ccccn1)C(=O)N[C@@H]1C[C@H]1c1cccc(Cl)c1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a halide group? N#Cc1ccc(NCCOCc2ccccc2)nc1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1ccc(C)c(OCCC(=O)O[C@@H]2CCSC2)c1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cc(C)c(C)c(S(=O)(=O)/N=C(\[O-])Cn2c(=O)cnc3ccccc32)c1C ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCOc1ccc(F)c(C(=O)NCc2ccnc(OC(C)(C)C)c2)c1F ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCc1ccc(C(=O)Nc2nc(-c3ccc4c(c3)CCC(=O)N4)cs2)cc1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. C(=O)(NC1(C(OC)=O)CCCC1)Cc1csc(n1)-c1cnccc1 ### Response: COC(=O)C1(NC(=O)Cc2csc(-c3cccnc3)n2)CCCC1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@@H]1CC([NH+]2CCC[C@@H]2c2cccc3c2OCCO3)C[C@@H](C)O1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [14*]c1nc(C)c([14*])s1 Fragment 2: [5*]N(C)C ### Response: CC[C@H](C)C[NH+](C)Cc1sc(N(C)C)nc1C
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[NH2+][C@@H](Cc1ccc(F)cc1)[C@H]1CN2CCC[C@@H]2CO1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a carboxyl group? C[C@H]1CCC[C@](C#N)(Cc2ccc(O)cc2)C1 ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[C@@H](CS(C)(=O)=O)[NH2+][C@H]1CCCOc2c(Br)cccc21 ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. C(/Nc1cnccc1)=C(\S(=O)(C(C)C)=O)C#N ### Response: CC(C)S(=O)(=O)/C(C#N)=C/Nc1cccnc1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC1(C)Cc2nc3oc4c(SCC(=O)N5CCCC5)ncnc4c3cc2CO1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [6*]C(=O)c1cccnc1 Fragment 2: [6*]C(=O)[C@@H]1[C@H]([13*])NC(=O)N[C@]1([13*])O ### Response: O=C1N[C@@H](c2ccccc2)[C@@H](C(=O)c2cccnc2)[C@](O)(C(F)(F)F)N1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COCCc1cc(NC(=O)c2cc(F)ccc2O)n(C)n1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a sulfonyl group? CCC[NH2+]CCNS(=O)(=O)c1cccc2cnccc12 ### Response: Yes
canonicalization
### Instruction: Canonicalize the following SMILES string. C[C@H]([C@@H](C(Nc1ccccc1)=O)Cc1ccc(cc1)OC)C([O-])=O ### Response: COc1ccc(C[C@H](C(=O)Nc2ccccc2)[C@@H](C)C(=O)[O-])cc1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]Nc1cc([16*])ccc1[16*] Fragment 2: [8*]C(F)(F)F ### Response: CCCC(=O)Nc1cc(C(F)(F)F)ccc1N1CCCC[C@@H]1C
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1ccc(NC(=O)CSc2nccn(-c3ccc(Br)c(C)c3)c2=O)cc1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a amide group? Cc1cc(C)c2c(c1)OCC[C@H]2[NH2+][C@H]1CC(=O)N(C(C)(C)C)C1 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]OCC(F)F Fragment 2: [14*]c1cccc([14*])n1 ### Response: Cn1cc(C(=O)NNC(=O)c2cccc(OCC(F)F)n2)cn1
functional_group
### Instruction: Does the molecule contain a phenol group? O=C(Nc1cccc(N2CCCCCC2)c1)N[C@H]1CC[NH+](CC2CC2)C1 ### Response: No
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? COc1cc2nc(NC(=O)[C@@H](C)Oc3ccccc3)sc2cc1OC ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCC(CC)n1nccc1C(=O)O[C@@H](C)[C@H]1CCCO1 ### Response: 0