task
stringclasses
5 values
input
stringlengths
89
339
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c([C@@H](NC(=O)CCCN2C(=O)NC3(C2=O)CCCC3)CC)ccc(C)c1 ### Response: CC[C@H](NC(=O)CCCN1C(=O)NC2(CCCC2)C1=O)c1ccc(C)cc1
functional_group
### Instruction: Does the molecule contain a amine group? O=C(N[C@H](CC(=O)N1CCC[C@H]2CCCC[C@@H]21)c1ccccc1)c1ccccc1Cl ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]OCC[4*] Fragment 2: [16*]c1ccc(C#N)cc1OC ### Response: COc1cc(C#N)ccc1OCC[NH+]1CCC(CO)CC1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1nn(CN2CCN(C(=O)c3cccs3)CC2)c(=S)n1C1CC1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC[NH+]1CCN(CC(=O)N2CCC(C(=O)N3CCCC3)CC2)CC1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. C(CSc1nc2ccc(OCC)cc2cc1C#N)(Nc1ccc(cc1)[N+](=O)[O-])=O ### Response: CCOc1ccc2nc(SCC(=O)Nc3ccc([N+](=O)[O-])cc3)c(C#N)cc2c1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. C#CCOc1ccc(Br)cc1/C=N/NC(=O)C(=O)Nc1cccc(Cl)c1Cl ### Response: 2
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1csc(NC(=O)N[C@@H]2CCc3ccccc32)n1 ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. O=C(COc1ccc2nccnc2c1)N(Cc1ccccc1)C1CC1 ### Response: 3
functional_group
### Instruction: Does the molecule contain a ester group? CC(C)c1nncn1CCNC(=O)c1cc([N+](=O)[O-])ccc1Cl ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1cc(=O)oc2cc(OCC(=O)OCc3nc4ccccc4s3)ccc12 ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. C1[NH+](Cc2nc(-c3ccc(cc3)F)no2)CCC[C@H]1OCC ### Response: CCO[C@@H]1CCC[NH+](Cc2nc(-c3ccc(F)cc3)no2)C1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]OCC Fragment 2: [5*]Nc1c(C)cccc1CC ### Response: CCOC(=O)N1CCC[C@H](C(=O)Nc2c(C)cccc2CC)C1
functional_group
### Instruction: Does the molecule contain a nitro group? Cc1nn(CC(=O)N[C@H]2CCCc3ccccc32)c(C)c1S(=O)(=O)N1CCc2ccccc21 ### Response: No
functional_group
### Instruction: Does the molecule contain a halide group? Cn1cc(C(=O)NCc2cc3n(n2)CCCN(S(C)(=O)=O)C3)cn1 ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. COc1ccc(O[C@@H](C)CNc2cc(Cl)nc(C)n2)cc1 ### Response: 0
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COc1cccc([C@@H]2Nc3c(ccc(C)c3C)[C@H]3C=CC[C@H]32)c1O ### Response: 3
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(-c2cocc2)cccc1C(Nc1c(cc(OCC)cc1)C(N)=O)=O ### Response: CCOc1ccc(NC(=O)c2cccc(-c3ccoc3)c2)c(C(N)=O)c1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CCC1(C(=O)Nc2[nH]ncc2/C(N)=N/O)CCCC1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. c1cccc(c1N1C(=O)[C@@H](CCC1)NCc1cnc(s1)C1CCC1)F ### Response: O=C1[C@H](NCc2cnc(C3CCC3)s2)CCCN1c1ccccc1F
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CCn1c(=O)n(CC(=O)N[C@@H]2CC[NH+]3CCCC[C@H]23)c2ccccc21 ### Response: Yes
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COc1ccc(C[NH+]2C[C@H]3CC[C@@H]2CN(C)C3)c(OC)c1OC ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]CCCSC Fragment 2: [16*]c1ccccc1 ### Response: CSCCC[NH+](C)Cc1c(C)nn(-c2ccccc2)c1C
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [14*]c1ccn(C)n1 Fragment 2: [5*]N[C@H]1CCCC[C@H]1O ### Response: Cn1ccc(N[C@H]2CCCC[C@H]2O)n1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(OC)cc(ccc1OCc1ccccc1)N1CC[NH2+]CC1 ### Response: COc1cc(N2CC[NH2+]CC2)ccc1OCc1ccccc1
canonicalization
### Instruction: Canonicalize the following SMILES string. C1(C(N([C@H](C=1C(=O)c1ccncc1)c1ccc(O)cc1)CCc1ccccc1)=O)[O-] ### Response: O=C(C1=C([O-])C(=O)N(CCc2ccccc2)[C@H]1c1ccc(O)cc1)c1ccncc1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [14*]c1noc([14*])n1 Fragment 2: [5*][NH+]1CC[S@@](=O)C(C)(C)C1 ### Response: CC1(C)C[NH+](CCCc2nc(-c3ccccc3)no2)CC[S@]1=O
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1cc(F)cc(NC[C@@H](O)CO[C@H]2CCC[C@H](C)C2)c1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CN(CC[NH+](C)C)C(=O)C[C@H]1COCCN1C(=O)c1ccc2[nH]nnc2c1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a phenol group? C[C@@H](NC(=O)NC1(C)Cc2ccccc2C1)c1nnc2ccccn12 ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]CCCl Fragment 2: [3*]OS(=O)(=O)CS(C)(=O)=O ### Response: CS(=O)(=O)CS(=O)(=O)OCCCl
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COCc1cc(N2CC[C@@H]([NH3+])[C@@H](OC)C2)ncn1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]Cc1ccccc1 Fragment 2: [5*]Nc1ccc([16*])cc1 ### Response: O=C(CSc1cccc[n+]1[O-])Nc1ccc(OCc2ccccc2)cc1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC[NH2+][C@H](C)[C@H](O)c1cccc(C2CC2)c1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a nitrile group? Cc1ncsc1CNc1ccccc1OCC(F)F ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(Nc1ccnn1-c1ccc(Cl)cc1)c1ncn(-c2ccccc2)n1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(OCC)ccc(cc1OC)/C=C/C(NC[C@H]1OCCC1)=O ### Response: CCOc1ccc(/C=C/C(=O)NC[C@@H]2CCCO2)cc1OC
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CNC(=O)c1sc(Nc2ccc(OC)nc2)nc1C ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]CCC Fragment 2: [4*]CC[NH2+]C ### Response: CCCN(CC[NH2+]C)C[C@@H]1Cc2ccccc2S1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CN(C)C(=O)Nc1cccc(C(=O)N[C@H](CC(F)(F)F)c2ccc(F)cc2)c1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. C(C(=O)Oc1cc(C)ccc1C)CCNC(C(C)(C)C)=O ### Response: Cc1ccc(C)c(OC(=O)CCCNC(=O)C(C)(C)C)c1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. Cc1cscc1[C@H](Br)c1ccc2[nH]c(=O)c(=O)[nH]c2c1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [8*][C@@H](C)OC Fragment 2: [14*]c1ncc(CO)cn1 ### Response: CO[C@H](C)c1ncc(CO)cn1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1ccc(C(=O)N(C)CC[NH+](C)C)cc1C ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [3*]OC(C)C Fragment 2: [5*]N[C@H]1C[C@@H]1C ### Response: CC(C)Oc1ncc(C(=O)N[C@H]2C[C@@H]2C)cc1Cl
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCOC(=O)c1ccc(N2C(=O)c3ccc(Oc4cccc(N)c4)cc3C2=O)cc1 ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [1*]C(=O)C[C@H](C)COC Fragment 2: [5*]Nc1ncc(C#CCN)s1 ### Response: COC[C@@H](C)CC(=O)Nc1ncc(C#CCN)s1
functional_group
### Instruction: Does the molecule contain a ether group? CCO[C@H]1C[C@H](NC(=O)Nc2cnccc2C)C1(C)C ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCOC(=O)c1[nH]c2ccccc2c1NC(=O)COc1ccc(Cl)cc1 ### Response: 2
functional_group
### Instruction: Does the molecule contain a carboxyl group? CCc1ccc(S(=O)(=O)N2CCC3(CC2)N=C(c2ccc(C)c(C)c2)C(=O)N3)cc1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. C(NC(=O)[C@@H]1N(c2ccccc2C1)C(=O)c1c(cc(cc1)OC)OC)C ### Response: CCNC(=O)[C@H]1Cc2ccccc2N1C(=O)c1ccc(OC)cc1OC
functional_group
### Instruction: Does the molecule contain a amide group? COc1cc(C)ccc1OCC(=O)NNC(=O)c1ccccc1 ### Response: Yes
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CCn1nc(C(C)C)cc1C(=O)NC[C@H](C)Oc1ccccc1 ### Response: Yes
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [8*]C(C)(C)C Fragment 2: [5*][NH2+][C@@H]1CCC[C@H]([15*])CC1 ### Response: CC(C)(C)[C@H]1CCC[C@@H]([NH2+]CC(C)(C)S(C)(=O)=O)CC1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N[C@H]([8*])C Fragment 2: [1*]C(=O)C([1*])=O ### Response: Cc1cc(NC(=O)C(=O)N[C@@H](C)c2ccccc2Br)no1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CCCOc1cc(/C=C/C(=O)c2ccc(O)cc2)ccc1OC ### Response: 3
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CNC(=O)c1cccc(CNC(=O)[C@@H]2CCN(c3ccccc3Br)C2=O)c1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(NC[C@@H](O)C[NH+]1CCc2ccccc2C1)Nc1nccs1 ### Response: 3
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CC(C)c1nc(S(=O)(=O)N(C)Cc2nc3c(s2)CCCC3)c[nH]1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? C[NH+](C)[C@@H]1CC[C@H](NC(=O)CN[C@@H](c2ccccc2)C(F)(F)F)C1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. Cn1cc(cn1)NCCN1CCOCC1 ### Response: Cn1cc(NCCN2CCOCC2)cn1
functional_group
### Instruction: Does the molecule contain a ketone group? CCc1c(C(=O)NNC(=O)Cc2ccncc2)[nH]c(C)c1C(C)=O ### Response: Yes
functional_group
### Instruction: Does the molecule contain a hydroxyl group? C[C@@H](NC(=O)N1CC[NH+]2CCCC[C@H]2C1)C(=O)[O-] ### Response: No
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CN(C[C@@H]1CCCO1)C(=O)c1cc(N2CCCC2=O)cc(C(F)(F)F)c1 ### Response: 2
canonicalization
### Instruction: Canonicalize the following SMILES string. c1c(ccc(c1)Cl)[C@H]1C(C(C)=O)=C(C[C@](C)(O)[C@@H]1C(C)=O)Nc1ccc(OC)cc1 ### Response: COc1ccc(NC2=C(C(C)=O)[C@H](c3ccc(Cl)cc3)[C@@H](C(C)=O)[C@@](C)(O)C2)cc1
functional_group
### Instruction: Does the molecule contain a amide group? O=C(CCc1cccc([N+](=O)[O-])c1)Nc1ccc2c(c1)OCCO2 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O[C@@H]1C[C@H](CNCc2cnn(-c3ccccc3)c2)[NH+](Cc2ccccc2)C1 ### Response: 1
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(n(c(SC[C@@H]2OCCC2)nn1)C)C1CC[NH+](CC1)Cc1cc(OC)c2c(c1)OCO2 ### Response: COc1cc(C[NH+]2CCC(c3nnc(SC[C@H]4CCCO4)n3C)CC2)cc2c1OCO2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. COc1ccc(S(=O)(=O)c2c(C)cc(C)n(CC(=O)Nc3cccc4ccccc34)c2=O)cc1 ### Response: 4
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1cccc(Nc2ccccc2C(=O)NC2=NCCS2)c1C ### Response: 2
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [9*]n1c(N)[n+](CC)c2ccccc21 Fragment 2: [3*]OCC[8*] ### Response: CC[n+]1c(N)n(CCOc2ccc(Cl)cc2Cl)c2ccccc21
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc(NC(=O)NCc2ccc([S@@](C)=O)cc2)c(OC)c1 ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1ccc(-n2c(SCC(=O)NC(=O)NC3CCCC3)nnc2-c2ccccc2)cc1C ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. Cc1nn(CN2CCN(C(=O)c3cccs3)CC2)c(=S)n1C1CC1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a ester group? O=C(Nc1cc(Cl)cc(Cl)c1)C1CCN(S(=O)(=O)/C=C/c2ccccc2)CC1 ### Response: No
canonicalization
### Instruction: Canonicalize the following SMILES string. C1[C@@H]([NH+]2CCN(CC2)c2ccc(cc2)C(C)=O)CCC[C@H]1C ### Response: CC(=O)c1ccc(N2CC[NH+]([C@H]3CCC[C@@H](C)C3)CC2)cc1
functional_group
### Instruction: Does the molecule contain a amine group? CCN[C@@]1(C(=O)[O-])CC[C@@H]([NH+]2CCC(C)(CC)CC2)C1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc(-c2cc3ccc4c(c3oc2=O)CN([C@@H]2CCS(=O)(=O)C2)CO4)c(OC)c1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CC(C)[C@@H]([NH3+])C(=O)N[C@@H](C)C(=O)N1CCC[C@@H]1C(=O)NCC(=O)[O-] ### Response: No
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? Cc1cccc(NS(=O)(=O)c2ccc(C(=O)N3CCN(c4ccccc4Cl)CC3)cc2)c1C ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? CC[C@H](C)C(=O)COc1ccc(C)cn1 ### Response: 5
canonicalization
### Instruction: Canonicalize the following SMILES string. c1(ccc(c(S(=O)(=O)N2CCCC2)c1)Cl)C(=O)NCC(Nc1cccc(c1C)Cl)=O ### Response: Cc1c(Cl)cccc1NC(=O)CNC(=O)c1ccc(Cl)c(S(=O)(=O)N2CCCC2)c1
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCN(C1CCN(C(=O)c2cn(Cc3ccccc3)nc2-c2ccccc2)CC1)S(C)(=O)=O ### Response: 3
functional_group
### Instruction: Does the molecule contain a aldehyde group? CC(C)N(C)S(=O)(=O)c1ccc(C(=O)Nc2sc3c(c2C(N)=O)CC[NH+](C(C)C)C3)cc1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. O=C(OCC(=O)N1CCCC1)C1CCN(c2ccc(Cl)cn2)CC1 ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(N[N-]S(=O)(=O)c1ccccc1[N+](=O)[O-])c1ccncc1 ### Response: 1
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? O[C@@H]1C[C@H](CNCc2cnn(-c3ccccc3)c2)[NH+](Cc2ccccc2)C1 ### Response: Yes
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? COc1ccc(NC(=O)Cn2c(-c3ccc(F)cc3)nc(C)cc2=O)cc1OC ### Response: 2
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(Cc1ccc(Cl)cc1)NC[C@](O)(c1ccccc1)C(F)(F)F ### Response: 3
functional_group
### Instruction: Does the molecule contain a aromatic_ring group? CCCc1cc(NC(=O)CCC(F)(F)F)n(C)n1 ### Response: No
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCCNC(=O)NC(=O)CN1C[C@H](CC)Oc2ccccc21 ### Response: 2
ring_counting
### Instruction: Count the six-membered rings in the following molecule. CCC[C@@](O)(c1ccccc1)[C@H](C)C#N ### Response: 1
chain_length
### Instruction: What is the length of the longest acyclic carbon chain in the molecule? O=C(NC1CC[NH+](Cc2ccccc2)CC1)c1csc(NC[C@@H]2CCCO2)n1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [8*][C@H](O)c1ccccc1[16*] Fragment 2: [15*][C@@]1(C#N)CC[C@@H](C)C1 ### Response: C[C@@H]1CC[C@](C#N)([C@H](O)c2ccccc2OC(F)(F)F)C1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [4*]Cc1ccco1 Fragment 2: [1*]C(=O)[C@@H]1CCC[NH+]1[5*] ### Response: CCN(CC)C(=O)[C@@H]1CCC[NH+]1Cc1ccco1
ring_counting
### Instruction: Count the five-membered rings in the following molecule. CN(C)c1ccc(/C=C2\CCC(C3=CCCC3)=C2N2CCOCC2)cc1 ### Response: 2
ring_counting
### Instruction: Count the five-membered rings in the following molecule. C[C@@H](NC(=O)c1ccc(-c2ccc(Cl)cc2)s1)C1CC1 ### Response: 1
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]Nc1ccc([16*])cc1 Fragment 2: [14*]c1csc(C)n1 ### Response: Cc1nc(-c2ccc(NCc3cc(C#N)cs3)cc2)cs1
functional_group
### Instruction: Does the molecule contain a amine group? CC(=O)N1CCN(C(=O)c2cccc(N3C(=O)C(C)(C)CS3(=O)=O)c2)CC1 ### Response: No
fragment_assembly
### Instruction: Assemble these two molecular fragments into a single molecule. Fragment 1: [5*]N1CC[NH+]([5*])CC1 Fragment 2: [15*]C1CCC([15*])CC1 ### Response: CCCC1CCC([NH+]2CCN(Cc3[nH+]ccn3C)CC2)CC1