DCAgent2/terminal_bench_2_a1_stack_bash_withtests_20260325_012838

conversations listlengths 2 370	agent stringclasses 1 value	model stringclasses 1 value	model_provider stringclasses 1 value	date stringdate 2026-03-25 01:32:45 2026-03-25 05:01:52	task stringlengths 7 32	episode stringlengths 9 11	run_id stringclasses 1 value	trial_name stringlengths 16 41	result stringclasses 6 values	verifier_output stringlengths 0 109k ⌀
[ { "content": "You are an AI assistant tasked with solving command-line tasks in a Linux environment. You will be given a task description and the output from previously executed commands. Your goal is to solve the task by providing batches of shell commands.\n\nFormat your response as JSON with the following st...	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T01:47:53.600035+00:00	dna-insert	episode-3	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	dna-insert__pr2HUZy	SummarizationTimeoutError	Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease Hit:2 http://security.ubuntu.com/ubuntu noble-security InRelease Hit:3 http://archive.ubuntu.com/ubuntu noble-updates InRelease Hit:4 http://archive.ubuntu.com/ubuntu noble-backports InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: krb5-locales libbrotli1 libcurl4t64 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-common libldap2 libnghttp2-14 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh-4 publicsuffix Suggested packages: krb5-doc krb5-user libsasl2-modules-gssapi-mit \| libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql ncbi-epcr The following NEW packages will be installed: curl krb5-locales libbrotli1 libcurl4t64 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-common libldap2 libnghttp2-14 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh-4 primer3 publicsuffix 0 upgraded, 20 newly installed, 0 to remove and 14 not upgraded. Need to get 2632 kB of archives. After this operation, 7686 kB of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 krb5-locales all 1.20.1-6ubuntu2.6 [14.8 kB] Get:2 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2.6 [34.4 kB] Get:3 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2.6 [82.0 kB] Get:4 http://archive.ubuntu.com/ubuntu noble/main amd64 libkeyutils1 amd64 1.6.3-3build1 [9490 B] Get:5 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2.6 [348 kB] Get:6 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2.6 [143 kB] Get:7 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libnghttp2-14 amd64 1.59.0-1ubuntu0.2 [74.3 kB] Get:8 http://archive.ubuntu.com/ubuntu noble/main amd64 libpsl5t64 amd64 0.21.2-1.1build1 [57.1 kB] Get:9 http://archive.ubuntu.com/ubuntu noble/main amd64 publicsuffix all 20231001.0357-0.1 [129 kB] Get:10 http://archive.ubuntu.com/ubuntu noble/main amd64 libbrotli1 amd64 1.1.0-2build2 [331 kB] Get:11 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-5ubuntu3.1 [20.4 kB] Get:12 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-5ubuntu3.1 [53.2 kB] Get:13 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libldap2 amd64 2.6.10+dfsg-0ubuntu0.24.04.1 [198 kB] Get:14 http://archive.ubuntu.com/ubuntu noble/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build7 [56.3 kB] Get:15 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libssh-4 amd64 0.10.6-2ubuntu0.4 [190 kB] Get:16 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu10.8 [342 kB] Get:17 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 curl amd64 8.5.0-2ubuntu10.8 [227 kB] Get:18 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libldap-common all 2.6.10+dfsg-0ubuntu0.24.04.1 [32.9 kB] Get:19 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-5ubuntu3.1 [69.9 kB] Get:20 http://archive.ubuntu.com/ubuntu noble/universe amd64 primer3 amd64 2.6.1-4 [221 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2632 kB in 1s (2250 kB/s) Selecting previously unselected package krb5-locales. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6337 files and directories currently installed.) Preparing to unpack .../00-krb5-locales_1.20.1-6ubuntu2.6_all.deb ... Unpacking krb5-locales (1.20.1-6ubuntu2.6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../01-libkrb5support0_1.20.1-6ubuntu2.6_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6ubuntu2.6) ... Selecting previously unselected package libk5crypto3:amd64. 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Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../13-librtmp1_2.4+20151223.gitfa8646d.1-2build7_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... Selecting previously unselected package libssh-4:amd64. Preparing to unpack .../14-libssh-4_0.10.6-2ubuntu0.4_amd64.deb ... Unpacking libssh-4:amd64 (0.10.6-2ubuntu0.4) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../15-libcurl4t64_8.5.0-2ubuntu10.8_amd64.deb ... Unpacking libcurl4t64:amd64 (8.5.0-2ubuntu10.8) ... Selecting previously unselected package curl. Preparing to unpack .../16-curl_8.5.0-2ubuntu10.8_amd64.deb ... Unpacking curl (8.5.0-2ubuntu10.8) ... Selecting previously unselected package libldap-common. Preparing to unpack .../17-libldap-common_2.6.10+dfsg-0ubuntu0.24.04.1_all.deb ... Unpacking libldap-common (2.6.10+dfsg-0ubuntu0.24.04.1) ... Selecting previously unselected package libsasl2-modules:amd64. Preparing to unpack .../18-libsasl2-modules_2.1.28+dfsg1-5ubuntu3.1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.28+dfsg1-5ubuntu3.1) ... Selecting previously unselected package primer3. Preparing to unpack .../19-primer3_2.6.1-4_amd64.deb ... Unpacking primer3 (2.6.1-4) ... Setting up libkeyutils1:amd64 (1.6.3-3build1) ... Setting up libbrotli1:amd64 (1.1.0-2build2) ... Setting up libsasl2-modules:amd64 (2.1.28+dfsg1-5ubuntu3.1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1build1) ... Setting up libnghttp2-14:amd64 (1.59.0-1ubuntu0.2) ... Setting up krb5-locales (1.20.1-6ubuntu2.6) ... Setting up libldap-common (2.6.10+dfsg-0ubuntu0.24.04.1) ... Setting up libkrb5support0:amd64 (1.20.1-6ubuntu2.6) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-5ubuntu3.1) ... Setting up primer3 (2.6.1-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... Setting up libk5crypto3:amd64 (1.20.1-6ubuntu2.6) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-5ubuntu3.1) ... Setting up libkrb5-3:amd64 (1.20.1-6ubuntu2.6) ... Setting up publicsuffix (20231001.0357-0.1) ... Setting up libldap2:amd64 (2.6.10+dfsg-0ubuntu0.24.04.1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6ubuntu2.6) ... Setting up libssh-4:amd64 (0.10.6-2ubuntu0.4) ... Setting up libcurl4t64:amd64 (8.5.0-2ubuntu10.8) ... Setting up curl (8.5.0-2ubuntu10.8) ... Processing triggers for libc-bin (2.39-0ubuntu8.7) ... downloading uv 0.9.5 x86_64-unknown-linux-gnu no checksums to verify installing to /root/.local/bin uv uvx everything's installed! To add $HOME/.local/bin to your PATH, either restart your shell or run: source $HOME/.local/bin/env (sh, bash, zsh) source $HOME/.local/bin/env.fish (fish) Downloading cpython-3.13.9-linux-x86_64-gnu (download) (32.0MiB) Downloading cpython-3.13.9-linux-x86_64-gnu (download) Downloading pygments (1.2MiB) Downloading pygments Installed 6 packages in 34ms ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.1, pluggy-1.6.0 rootdir: /tests plugins: json-ctrf-0.3.5 collected 1 item ../tests/test_outputs.py F [100%] =================================== FAILURES =================================== _________________________________ test_primers _________________________________ def test_primers(): """Test that the generated primers will successfully amplify the input DNA and contain the required overhangs that will result in the output sequence. """ # Reference the directory the agent operated in (the WORKDIR in the Docker env) primers_path = Path("/app/primers.fasta") > assert primers_path.exists(), f"File {primers_path} does not exist." E AssertionError: File /app/primers.fasta does not exist. E assert False E + where False = exists() E + where exists = PosixPath('/app/primers.fasta').exists /tests/test_outputs.py:48: AssertionError =========================== short test summary info ============================ FAILED ../tests/test_outputs.py::test_primers - AssertionError: File /app/pri... ============================== 1 failed in 0.05s ===============================
[ { "content": "You are an AI assistant tasked with solving command-line tasks in a Linux environment. You will be given a task description and the output from previously executed commands. Your goal is to solve the task by providing batches of shell commands.\n\nFormat your response as JSON with the following st...	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T02:36:15.975195+00:00	build-pov-ray	episode-14	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	build-pov-ray__BvtjQHy	SummarizationTimeoutError	Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease Hit:2 http://archive.ubuntu.com/ubuntu noble-updates InRelease Hit:3 http://archive.ubuntu.com/ubuntu noble-backports InRelease Hit:4 http://security.ubuntu.com/ubuntu noble-security InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... imagemagick is already the newest version (8:6.9.12.98+dfsg1-5.2build2). The following additional packages will be installed: libcurl3t64-gnutls libcurl4t64 The following packages will be upgraded: curl libcurl3t64-gnutls libcurl4t64 3 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. Need to get 902 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 curl amd64 8.5.0-2ubuntu10.8 [227 kB] Get:2 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu10.8 [342 kB] Get:3 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libcurl3t64-gnutls amd64 8.5.0-2ubuntu10.8 [334 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 902 kB in 2s (552 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21527 files and directories currently installed.) Preparing to unpack .../curl_8.5.0-2ubuntu10.8_amd64.deb ... Unpacking curl (8.5.0-2ubuntu10.8) over (8.5.0-2ubuntu10.6) ... Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu10.8_amd64.deb ... Unpacking libcurl4t64:amd64 (8.5.0-2ubuntu10.8) over (8.5.0-2ubuntu10.6) ... Preparing to unpack .../libcurl3t64-gnutls_8.5.0-2ubuntu10.8_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10.8) over (8.5.0-2ubuntu10.6) ... Setting up libcurl4t64:amd64 (8.5.0-2ubuntu10.8) ... Setting up libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10.8) ... Setting up curl (8.5.0-2ubuntu10.8) ... Processing triggers for libc-bin (2.39-0ubuntu8.7) ... downloading uv 0.9.5 x86_64-unknown-linux-gnu no checksums to verify installing to /root/.local/bin uv uvx everything's installed! To add $HOME/.local/bin to your PATH, either restart your shell or run: source $HOME/.local/bin/env (sh, bash, zsh) source $HOME/.local/bin/env.fish (fish) Downloading cpython-3.13.9-linux-x86_64-gnu (download) (32.0MiB) Downloading cpython-3.13.9-linux-x86_64-gnu (download) Downloading pygments (1.2MiB) Downloading networkx (2.0MiB) Downloading scipy (33.6MiB) Downloading scikit-image (14.3MiB) Downloading numpy (15.9MiB) Downloading pillow (4.3MiB) Downloading pillow Downloading pygments Downloading networkx Downloading scikit-image Downloading numpy Downloading scipy Installed 14 packages in 109ms ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.1, pluggy-1.6.0 rootdir: /tests plugins: json-ctrf-0.3.5 collected 3 items ../tests/test_outputs.py FFF [100%] =================================== FAILURES =================================== ________________________ test_illum1_render_and_verify _________________________ def test_illum1_render_and_verify(): """Test POV-Ray 2.2 by rendering illum1.pov to TGA, then to PNG""" > result = subprocess.run( [ "/usr/local/bin/povray", "+L/app/povray-2.2/povdoc/include", "+I/app/deps/illum1.pov", "+O/app/illum1.tga", "+FT", "+W640", "+H480", "+A0.1", "+V", "-P", ], capture_output=True, text=True, cwd="/app", ) /tests/test_outputs.py:15: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:554: in run with Popen(popenargs, kwargs) as process: ^^^^^^^^^^^^^^^^^^^^^^^^^^^ /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:1039: in __init__ self._execute_child(args, executable, preexec_fn, close_fds, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <Popen: returncode: 255 args: ['/usr/local/bin/povray', '+L/app/povray-2.2/p...> args = ['/usr/local/bin/povray', '+L/app/povray-2.2/povdoc/include', '+I/app/deps/illum1.pov', '+O/app/illum1.tga', '+FT', '+W640', ...] executable = b'/usr/local/bin/povray', preexec_fn = None, close_fds = True pass_fds = (), cwd = '/app', env = None, startupinfo = None, creationflags = 0 shell = False, p2cread = -1, p2cwrite = -1, c2pread = 12, c2pwrite = 13 errread = 14, errwrite = 15, restore_signals = True, gid = None, gids = None uid = None, umask = -1, start_new_session = False, process_group = -1 def _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, gid, gids, uid, umask, start_new_session, process_group): """Execute program (POSIX version)""" if isinstance(args, (str, bytes)): args = [args] elif isinstance(args, os.PathLike): if shell: raise TypeError('path-like args is not allowed when ' 'shell is true') args = [args] else: args = list(args) if shell: # On Android the default shell is at '/system/bin/sh'. unix_shell = ('/system/bin/sh' if hasattr(sys, 'getandroidapilevel') else '/bin/sh') args = [unix_shell, "-c"] + args if executable: args[0] = executable if executable is None: executable = args[0] sys.audit("subprocess.Popen", executable, args, cwd, env) if (_USE_POSIX_SPAWN and os.path.dirname(executable) and preexec_fn is None and (not close_fds or _HAVE_POSIX_SPAWN_CLOSEFROM) and not pass_fds and cwd is None and (p2cread == -1 or p2cread > 2) and (c2pwrite == -1 or c2pwrite > 2) and (errwrite == -1 or errwrite > 2) and not start_new_session and process_group == -1 and gid is None and gids is None and uid is None and umask < 0): self._posix_spawn(args, executable, env, restore_signals, close_fds, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) return orig_executable = executable # For transferring possible exec failure from child to parent. # Data format: "exception name:hex errno:description" # Pickle is not used; it is complex and involves memory allocation. errpipe_read, errpipe_write = os.pipe() # errpipe_write must not be in the standard io 0, 1, or 2 fd range. low_fds_to_close = [] while errpipe_write < 3: low_fds_to_close.append(errpipe_write) errpipe_write = os.dup(errpipe_write) for low_fd in low_fds_to_close: os.close(low_fd) try: try: # We must avoid complex work that could involve # malloc or free in the child process to avoid # potential deadlocks, thus we do all this here. # and pass it to fork_exec() if env is not None: env_list = [] for k, v in env.items(): k = os.fsencode(k) if b'=' in k: raise ValueError("illegal environment variable name") env_list.append(k + b'=' + os.fsencode(v)) else: env_list = None # Use execv instead of execve. executable = os.fsencode(executable) if os.path.dirname(executable): executable_list = (executable,) else: # This matches the behavior of os._execvpe(). executable_list = tuple( os.path.join(os.fsencode(dir), executable) for dir in os.get_exec_path(env)) fds_to_keep = set(pass_fds) fds_to_keep.add(errpipe_write) self.pid = _fork_exec( args, executable_list, close_fds, tuple(sorted(map(int, fds_to_keep))), cwd, env_list, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, errpipe_read, errpipe_write, restore_signals, start_new_session, process_group, gid, gids, uid, umask, preexec_fn, _USE_VFORK) self._child_created = True finally: # be sure the FD is closed no matter what os.close(errpipe_write) self._close_pipe_fds(p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) # Wait for exec to fail or succeed; possibly raising an # exception (limited in size) errpipe_data = bytearray() while True: part = os.read(errpipe_read, 50000) errpipe_data += part if not part or len(errpipe_data) > 50000: break finally: # be sure the FD is closed no matter what os.close(errpipe_read) if errpipe_data: try: pid, sts = os.waitpid(self.pid, 0) if pid == self.pid: self._handle_exitstatus(sts) else: self.returncode = sys.maxsize except ChildProcessError: pass try: exception_name, hex_errno, err_msg = ( errpipe_data.split(b':', 2)) # The encoding here should match the encoding # written in by the subprocess implementations # like _posixsubprocess err_msg = err_msg.decode() except ValueError: exception_name = b'SubprocessError' hex_errno = b'0' err_msg = 'Bad exception data from child: {!r}'.format( bytes(errpipe_data)) child_exception_type = getattr( builtins, exception_name.decode('ascii'), SubprocessError) if issubclass(child_exception_type, OSError) and hex_errno: errno_num = int(hex_errno, 16) if err_msg == "noexec:chdir": err_msg = "" # The error must be from chdir(cwd). err_filename = cwd elif err_msg == "noexec": err_msg = "" err_filename = None else: err_filename = orig_executable if errno_num != 0: err_msg = os.strerror(errno_num) if err_filename is not None: > raise child_exception_type(errno_num, err_msg, err_filename) E FileNotFoundError: [Errno 2] No such file or directory: '/usr/local/bin/povray' /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:1972: FileNotFoundError _____________________________ test_povray_version ______________________________ def test_povray_version(): """Test POV-Ray version is 2.2""" > result = subprocess.run( ["/usr/local/bin/povray", "-h"], capture_output=True, text=True ) /tests/test_outputs.py:80: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:554: in run with Popen(popenargs, **kwargs) as process: ^^^^^^^^^^^^^^^^^^^^^^^^^^^ /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:1039: in __init__ self._execute_child(args, executable, preexec_fn, close_fds, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <Popen: returncode: 255 args: ['/usr/local/bin/povray', '-h']> args = ['/usr/local/bin/povray', '-h'], executable = b'/usr/local/bin/povray' preexec_fn = None, close_fds = True, pass_fds = (), cwd = None, env = None startupinfo = None, creationflags = 0, shell = False, p2cread = -1 p2cwrite = -1, c2pread = 12, c2pwrite = 13, errread = 14, errwrite = 15 restore_signals = True, gid = None, gids = None, uid = None, umask = -1 start_new_session = False, process_group = -1 def _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, gid, gids, uid, umask, start_new_session, process_group): """Execute program (POSIX version)""" if isinstance(args, (str, bytes)): args = [args] elif isinstance(args, os.PathLike): if shell: raise TypeError('path-like args is not allowed when ' 'shell is true') args = [args] else: args = list(args) if shell: # On Android the default shell is at '/system/bin/sh'. unix_shell = ('/system/bin/sh' if hasattr(sys, 'getandroidapilevel') else '/bin/sh') args = [unix_shell, "-c"] + args if executable: args[0] = executable if executable is None: executable = args[0] sys.audit("subprocess.Popen", executable, args, cwd, env) if (_USE_POSIX_SPAWN and os.path.dirname(executable) and preexec_fn is None and (not close_fds or _HAVE_POSIX_SPAWN_CLOSEFROM) and not pass_fds and cwd is None and (p2cread == -1 or p2cread > 2) and (c2pwrite == -1 or c2pwrite > 2) and (errwrite == -1 or errwrite > 2) and not start_new_session and process_group == -1 and gid is None and gids is None and uid is None and umask < 0): self._posix_spawn(args, executable, env, restore_signals, close_fds, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) return orig_executable = executable # For transferring possible exec failure from child to parent. # Data format: "exception name:hex errno:description" # Pickle is not used; it is complex and involves memory allocation. errpipe_read, errpipe_write = os.pipe() # errpipe_write must not be in the standard io 0, 1, or 2 fd range. low_fds_to_close = [] while errpipe_write < 3: low_fds_to_close.append(errpipe_write) errpipe_write = os.dup(errpipe_write) for low_fd in low_fds_to_close: os.close(low_fd) try: try: # We must avoid complex work that could involve # malloc or free in the child process to avoid # potential deadlocks, thus we do all this here. # and pass it to fork_exec() if env is not None: env_list = [] for k, v in env.items(): k = os.fsencode(k) if b'=' in k: raise ValueError("illegal environment variable name") env_list.append(k + b'=' + os.fsencode(v)) else: env_list = None # Use execv instead of execve. executable = os.fsencode(executable) if os.path.dirname(executable): executable_list = (executable,) else: # This matches the behavior of os._execvpe(). executable_list = tuple( os.path.join(os.fsencode(dir), executable) for dir in os.get_exec_path(env)) fds_to_keep = set(pass_fds) fds_to_keep.add(errpipe_write) self.pid = _fork_exec( args, executable_list, close_fds, tuple(sorted(map(int, fds_to_keep))), cwd, env_list, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, errpipe_read, errpipe_write, restore_signals, start_new_session, process_group, gid, gids, uid, umask, preexec_fn, _USE_VFORK) self._child_created = True finally: # be sure the FD is closed no matter what os.close(errpipe_write) self._close_pipe_fds(p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) # Wait for exec to fail or succeed; possibly raising an # exception (limited in size) errpipe_data = bytearray() while True: part = os.read(errpipe_read, 50000) errpipe_data += part if not part or len(errpipe_data) > 50000: break finally: # be sure the FD is closed no matter what os.close(errpipe_read) if errpipe_data: try: pid, sts = os.waitpid(self.pid, 0) if pid == self.pid: self._handle_exitstatus(sts) else: self.returncode = sys.maxsize except ChildProcessError: pass try: exception_name, hex_errno, err_msg = ( errpipe_data.split(b':', 2)) # The encoding here should match the encoding # written in by the subprocess implementations # like _posixsubprocess err_msg = err_msg.decode() except ValueError: exception_name = b'SubprocessError' hex_errno = b'0' err_msg = 'Bad exception data from child: {!r}'.format( bytes(errpipe_data)) child_exception_type = getattr( builtins, exception_name.decode('ascii'), SubprocessError) if issubclass(child_exception_type, OSError) and hex_errno: errno_num = int(hex_errno, 16) if err_msg == "noexec:chdir": err_msg = "" # The error must be from chdir(cwd). err_filename = cwd elif err_msg == "noexec": err_msg = "" err_filename = None else: err_filename = orig_executable if errno_num != 0: err_msg = os.strerror(errno_num) if err_filename is not None: > raise child_exception_type(errno_num, err_msg, err_filename) E FileNotFoundError: [Errno 2] No such file or directory: '/usr/local/bin/povray' /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:1972: FileNotFoundError ____________________ test_povray_built_from_correct_source _____________________ def test_povray_built_from_correct_source(): """Test that POV-Ray 2.2 was built from correct source files""" source_dir = Path("/app/povray-2.2") > assert source_dir.exists(), ( "POV-Ray 2.2 source directory not found - agent may not have built from source" ) E AssertionError: POV-Ray 2.2 source directory not found - agent may not have built from source E assert False E + where False = exists() E + where exists = PosixPath('/app/povray-2.2').exists /tests/test_outputs.py:95: AssertionError =========================== short test summary info ============================ FAILED ../tests/test_outputs.py::test_illum1_render_and_verify - FileNotFound... FAILED ../tests/test_outputs.py::test_povray_version - FileNotFoundError: [Er... FAILED ../tests/test_outputs.py::test_povray_built_from_correct_source - Asse... ============================== 3 failed in 1.28s ===============================
[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T01:32:47.137325+00:00	pytorch-model-cli	episode-52	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	pytorch-model-cli__29rhJt7	SummarizationTimeoutError	"Hit:1 http://deb.debian.org/debian bookworm InRelease\nHit:2 http://deb.debian.org/debian bookworm-(...TRUNCATED)
[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T02:53:27.419831+00:00	protein-assembly	episode-4	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	protein-assembly__Ujng6PY	SummarizationTimeoutError	"Hit:1 http://deb.debian.org/debian bookworm InRelease\nHit:2 http://deb.debian.org/debian bookworm-(...TRUNCATED)
[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T01:53:56.367818+00:00	git-multibranch	episode-120	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	git-multibranch__qGB6faw	AgentTimeoutError	"Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease\nHit:2 http://security.ubuntu.com/ubuntu nob(...TRUNCATED)
[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T02:47:45.552777+00:00	raman-fitting	episode-11	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	raman-fitting__L7zKL7A	SummarizationTimeoutError	"Hit:1 http://deb.debian.org/debian bookworm InRelease\nHit:2 http://deb.debian.org/debian bookworm-(...TRUNCATED)
[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T03:27:15.046570+00:00	build-pov-ray	episode-55	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	build-pov-ray__MbYtYKW	SummarizationTimeoutError	"Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease\nHit:2 http://archive.ubuntu.com/ubuntu nobl(...TRUNCATED)
[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T02:16:31.116331+00:00	extract-moves-from-video	episode-107	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	extract-moves-from-video__WW5whYh	AgentTimeoutError	"Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease\nHit:2 http://security.ubuntu.com/ubuntu nob(...TRUNCATED)
[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T03:10:50.359866+00:00	extract-moves-from-video	episode-100	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	extract-moves-from-video__yPNjA3n	AgentTimeoutError	"Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease\nHit:2 http://archive.ubuntu.com/ubuntu nobl(...TRUNCATED)
[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)	terminus-2	hosted_vllm/DCAgent/a1-stack_bash_withtests	hosted_vllm	2026-03-25T01:51:41.942027+00:00	raman-fitting	episode-9	d655e12b-0f3b-4257-b3ac-2aa2a7139e19	raman-fitting__ahUt4Ef	SummarizationTimeoutError	"Hit:1 http://deb.debian.org/debian bookworm InRelease\nHit:2 http://deb.debian.org/debian bookworm-(...TRUNCATED)

[ { "content": "You are an AI assistant tasked with solving command-line tasks in a Linux environment. You will be given a task description and the output from previously executed commands. Your goal is to solve the task by providing batches of shell commands.\n\nFormat your response as JSON with the following st...

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T01:47:53.600035+00:00

dna-insert

episode-3

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

dna-insert__pr2HUZy

SummarizationTimeoutError

Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease Hit:2 http://security.ubuntu.com/ubuntu noble-security InRelease Hit:3 http://archive.ubuntu.com/ubuntu noble-updates InRelease Hit:4 http://archive.ubuntu.com/ubuntu noble-backports InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: krb5-locales libbrotli1 libcurl4t64 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-common libldap2 libnghttp2-14 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh-4 publicsuffix Suggested packages: krb5-doc krb5-user libsasl2-modules-gssapi-mit | libsasl2-modules-gssapi-heimdal libsasl2-modules-ldap libsasl2-modules-otp libsasl2-modules-sql ncbi-epcr The following NEW packages will be installed: curl krb5-locales libbrotli1 libcurl4t64 libgssapi-krb5-2 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-common libldap2 libnghttp2-14 libpsl5t64 librtmp1 libsasl2-2 libsasl2-modules libsasl2-modules-db libssh-4 primer3 publicsuffix 0 upgraded, 20 newly installed, 0 to remove and 14 not upgraded. Need to get 2632 kB of archives. After this operation, 7686 kB of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 krb5-locales all 1.20.1-6ubuntu2.6 [14.8 kB] Get:2 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libkrb5support0 amd64 1.20.1-6ubuntu2.6 [34.4 kB] Get:3 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libk5crypto3 amd64 1.20.1-6ubuntu2.6 [82.0 kB] Get:4 http://archive.ubuntu.com/ubuntu noble/main amd64 libkeyutils1 amd64 1.6.3-3build1 [9490 B] Get:5 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libkrb5-3 amd64 1.20.1-6ubuntu2.6 [348 kB] Get:6 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libgssapi-krb5-2 amd64 1.20.1-6ubuntu2.6 [143 kB] Get:7 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libnghttp2-14 amd64 1.59.0-1ubuntu0.2 [74.3 kB] Get:8 http://archive.ubuntu.com/ubuntu noble/main amd64 libpsl5t64 amd64 0.21.2-1.1build1 [57.1 kB] Get:9 http://archive.ubuntu.com/ubuntu noble/main amd64 publicsuffix all 20231001.0357-0.1 [129 kB] Get:10 http://archive.ubuntu.com/ubuntu noble/main amd64 libbrotli1 amd64 1.1.0-2build2 [331 kB] Get:11 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-5ubuntu3.1 [20.4 kB] Get:12 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-5ubuntu3.1 [53.2 kB] Get:13 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libldap2 amd64 2.6.10+dfsg-0ubuntu0.24.04.1 [198 kB] Get:14 http://archive.ubuntu.com/ubuntu noble/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2build7 [56.3 kB] Get:15 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libssh-4 amd64 0.10.6-2ubuntu0.4 [190 kB] Get:16 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu10.8 [342 kB] Get:17 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 curl amd64 8.5.0-2ubuntu10.8 [227 kB] Get:18 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libldap-common all 2.6.10+dfsg-0ubuntu0.24.04.1 [32.9 kB] Get:19 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libsasl2-modules amd64 2.1.28+dfsg1-5ubuntu3.1 [69.9 kB] Get:20 http://archive.ubuntu.com/ubuntu noble/universe amd64 primer3 amd64 2.6.1-4 [221 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 2632 kB in 1s (2250 kB/s) Selecting previously unselected package krb5-locales. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 6337 files and directories currently installed.) Preparing to unpack .../00-krb5-locales_1.20.1-6ubuntu2.6_all.deb ... Unpacking krb5-locales (1.20.1-6ubuntu2.6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../01-libkrb5support0_1.20.1-6ubuntu2.6_amd64.deb ... Unpacking libkrb5support0:amd64 (1.20.1-6ubuntu2.6) ... Selecting previously unselected package libk5crypto3:amd64. 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Preparing to unpack .../18-libsasl2-modules_2.1.28+dfsg1-5ubuntu3.1_amd64.deb ... Unpacking libsasl2-modules:amd64 (2.1.28+dfsg1-5ubuntu3.1) ... Selecting previously unselected package primer3. Preparing to unpack .../19-primer3_2.6.1-4_amd64.deb ... Unpacking primer3 (2.6.1-4) ... Setting up libkeyutils1:amd64 (1.6.3-3build1) ... Setting up libbrotli1:amd64 (1.1.0-2build2) ... Setting up libsasl2-modules:amd64 (2.1.28+dfsg1-5ubuntu3.1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1build1) ... Setting up libnghttp2-14:amd64 (1.59.0-1ubuntu0.2) ... Setting up krb5-locales (1.20.1-6ubuntu2.6) ... Setting up libldap-common (2.6.10+dfsg-0ubuntu0.24.04.1) ... Setting up libkrb5support0:amd64 (1.20.1-6ubuntu2.6) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-5ubuntu3.1) ... Setting up primer3 (2.6.1-4) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2build7) ... Setting up libk5crypto3:amd64 (1.20.1-6ubuntu2.6) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-5ubuntu3.1) ... Setting up libkrb5-3:amd64 (1.20.1-6ubuntu2.6) ... Setting up publicsuffix (20231001.0357-0.1) ... Setting up libldap2:amd64 (2.6.10+dfsg-0ubuntu0.24.04.1) ... Setting up libgssapi-krb5-2:amd64 (1.20.1-6ubuntu2.6) ... Setting up libssh-4:amd64 (0.10.6-2ubuntu0.4) ... Setting up libcurl4t64:amd64 (8.5.0-2ubuntu10.8) ... Setting up curl (8.5.0-2ubuntu10.8) ... Processing triggers for libc-bin (2.39-0ubuntu8.7) ... downloading uv 0.9.5 x86_64-unknown-linux-gnu no checksums to verify installing to /root/.local/bin uv uvx everything's installed! To add $HOME/.local/bin to your PATH, either restart your shell or run: source $HOME/.local/bin/env (sh, bash, zsh) source $HOME/.local/bin/env.fish (fish) Downloading cpython-3.13.9-linux-x86_64-gnu (download) (32.0MiB) Downloading cpython-3.13.9-linux-x86_64-gnu (download) Downloading pygments (1.2MiB) Downloading pygments Installed 6 packages in 34ms ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.1, pluggy-1.6.0 rootdir: /tests plugins: json-ctrf-0.3.5 collected 1 item ../tests/test_outputs.py F [100%] =================================== FAILURES =================================== _________________________________ test_primers _________________________________ def test_primers(): """Test that the generated primers will successfully amplify the input DNA and contain the required overhangs that will result in the output sequence. """ # Reference the directory the agent operated in (the WORKDIR in the Docker env) primers_path = Path("/app/primers.fasta") > assert primers_path.exists(), f"File {primers_path} does not exist." E AssertionError: File /app/primers.fasta does not exist. E assert False E + where False = exists() E + where exists = PosixPath('/app/primers.fasta').exists /tests/test_outputs.py:48: AssertionError =========================== short test summary info ============================ FAILED ../tests/test_outputs.py::test_primers - AssertionError: File /app/pri... ============================== 1 failed in 0.05s ===============================

[ { "content": "You are an AI assistant tasked with solving command-line tasks in a Linux environment. You will be given a task description and the output from previously executed commands. Your goal is to solve the task by providing batches of shell commands.\n\nFormat your response as JSON with the following st...

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T02:36:15.975195+00:00

build-pov-ray

episode-14

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

build-pov-ray__BvtjQHy

SummarizationTimeoutError

Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease Hit:2 http://archive.ubuntu.com/ubuntu noble-updates InRelease Hit:3 http://archive.ubuntu.com/ubuntu noble-backports InRelease Hit:4 http://security.ubuntu.com/ubuntu noble-security InRelease Reading package lists... Reading package lists... Building dependency tree... Reading state information... imagemagick is already the newest version (8:6.9.12.98+dfsg1-5.2build2). The following additional packages will be installed: libcurl3t64-gnutls libcurl4t64 The following packages will be upgraded: curl libcurl3t64-gnutls libcurl4t64 3 upgraded, 0 newly installed, 0 to remove and 17 not upgraded. Need to get 902 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 curl amd64 8.5.0-2ubuntu10.8 [227 kB] Get:2 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libcurl4t64 amd64 8.5.0-2ubuntu10.8 [342 kB] Get:3 http://archive.ubuntu.com/ubuntu noble-updates/main amd64 libcurl3t64-gnutls amd64 8.5.0-2ubuntu10.8 [334 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 902 kB in 2s (552 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21527 files and directories currently installed.) Preparing to unpack .../curl_8.5.0-2ubuntu10.8_amd64.deb ... Unpacking curl (8.5.0-2ubuntu10.8) over (8.5.0-2ubuntu10.6) ... Preparing to unpack .../libcurl4t64_8.5.0-2ubuntu10.8_amd64.deb ... Unpacking libcurl4t64:amd64 (8.5.0-2ubuntu10.8) over (8.5.0-2ubuntu10.6) ... Preparing to unpack .../libcurl3t64-gnutls_8.5.0-2ubuntu10.8_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10.8) over (8.5.0-2ubuntu10.6) ... Setting up libcurl4t64:amd64 (8.5.0-2ubuntu10.8) ... Setting up libcurl3t64-gnutls:amd64 (8.5.0-2ubuntu10.8) ... Setting up curl (8.5.0-2ubuntu10.8) ... Processing triggers for libc-bin (2.39-0ubuntu8.7) ... downloading uv 0.9.5 x86_64-unknown-linux-gnu no checksums to verify installing to /root/.local/bin uv uvx everything's installed! To add $HOME/.local/bin to your PATH, either restart your shell or run: source $HOME/.local/bin/env (sh, bash, zsh) source $HOME/.local/bin/env.fish (fish) Downloading cpython-3.13.9-linux-x86_64-gnu (download) (32.0MiB) Downloading cpython-3.13.9-linux-x86_64-gnu (download) Downloading pygments (1.2MiB) Downloading networkx (2.0MiB) Downloading scipy (33.6MiB) Downloading scikit-image (14.3MiB) Downloading numpy (15.9MiB) Downloading pillow (4.3MiB) Downloading pillow Downloading pygments Downloading networkx Downloading scikit-image Downloading numpy Downloading scipy Installed 14 packages in 109ms ============================= test session starts ============================== platform linux -- Python 3.13.9, pytest-8.4.1, pluggy-1.6.0 rootdir: /tests plugins: json-ctrf-0.3.5 collected 3 items ../tests/test_outputs.py FFF [100%] =================================== FAILURES =================================== ________________________ test_illum1_render_and_verify _________________________ def test_illum1_render_and_verify(): """Test POV-Ray 2.2 by rendering illum1.pov to TGA, then to PNG""" > result = subprocess.run( [ "/usr/local/bin/povray", "+L/app/povray-2.2/povdoc/include", "+I/app/deps/illum1.pov", "+O/app/illum1.tga", "+FT", "+W640", "+H480", "+A0.1", "+V", "-P", ], capture_output=True, text=True, cwd="/app", ) /tests/test_outputs.py:15: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:554: in run with Popen(*popenargs, **kwargs) as process: ^^^^^^^^^^^^^^^^^^^^^^^^^^^ /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:1039: in __init__ self._execute_child(args, executable, preexec_fn, close_fds, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <Popen: returncode: 255 args: ['/usr/local/bin/povray', '+L/app/povray-2.2/p...> args = ['/usr/local/bin/povray', '+L/app/povray-2.2/povdoc/include', '+I/app/deps/illum1.pov', '+O/app/illum1.tga', '+FT', '+W640', ...] executable = b'/usr/local/bin/povray', preexec_fn = None, close_fds = True pass_fds = (), cwd = '/app', env = None, startupinfo = None, creationflags = 0 shell = False, p2cread = -1, p2cwrite = -1, c2pread = 12, c2pwrite = 13 errread = 14, errwrite = 15, restore_signals = True, gid = None, gids = None uid = None, umask = -1, start_new_session = False, process_group = -1 def _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, gid, gids, uid, umask, start_new_session, process_group): """Execute program (POSIX version)""" if isinstance(args, (str, bytes)): args = [args] elif isinstance(args, os.PathLike): if shell: raise TypeError('path-like args is not allowed when ' 'shell is true') args = [args] else: args = list(args) if shell: # On Android the default shell is at '/system/bin/sh'. unix_shell = ('/system/bin/sh' if hasattr(sys, 'getandroidapilevel') else '/bin/sh') args = [unix_shell, "-c"] + args if executable: args[0] = executable if executable is None: executable = args[0] sys.audit("subprocess.Popen", executable, args, cwd, env) if (_USE_POSIX_SPAWN and os.path.dirname(executable) and preexec_fn is None and (not close_fds or _HAVE_POSIX_SPAWN_CLOSEFROM) and not pass_fds and cwd is None and (p2cread == -1 or p2cread > 2) and (c2pwrite == -1 or c2pwrite > 2) and (errwrite == -1 or errwrite > 2) and not start_new_session and process_group == -1 and gid is None and gids is None and uid is None and umask < 0): self._posix_spawn(args, executable, env, restore_signals, close_fds, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) return orig_executable = executable # For transferring possible exec failure from child to parent. # Data format: "exception name:hex errno:description" # Pickle is not used; it is complex and involves memory allocation. errpipe_read, errpipe_write = os.pipe() # errpipe_write must not be in the standard io 0, 1, or 2 fd range. low_fds_to_close = [] while errpipe_write < 3: low_fds_to_close.append(errpipe_write) errpipe_write = os.dup(errpipe_write) for low_fd in low_fds_to_close: os.close(low_fd) try: try: # We must avoid complex work that could involve # malloc or free in the child process to avoid # potential deadlocks, thus we do all this here. # and pass it to fork_exec() if env is not None: env_list = [] for k, v in env.items(): k = os.fsencode(k) if b'=' in k: raise ValueError("illegal environment variable name") env_list.append(k + b'=' + os.fsencode(v)) else: env_list = None # Use execv instead of execve. executable = os.fsencode(executable) if os.path.dirname(executable): executable_list = (executable,) else: # This matches the behavior of os._execvpe(). executable_list = tuple( os.path.join(os.fsencode(dir), executable) for dir in os.get_exec_path(env)) fds_to_keep = set(pass_fds) fds_to_keep.add(errpipe_write) self.pid = _fork_exec( args, executable_list, close_fds, tuple(sorted(map(int, fds_to_keep))), cwd, env_list, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, errpipe_read, errpipe_write, restore_signals, start_new_session, process_group, gid, gids, uid, umask, preexec_fn, _USE_VFORK) self._child_created = True finally: # be sure the FD is closed no matter what os.close(errpipe_write) self._close_pipe_fds(p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) # Wait for exec to fail or succeed; possibly raising an # exception (limited in size) errpipe_data = bytearray() while True: part = os.read(errpipe_read, 50000) errpipe_data += part if not part or len(errpipe_data) > 50000: break finally: # be sure the FD is closed no matter what os.close(errpipe_read) if errpipe_data: try: pid, sts = os.waitpid(self.pid, 0) if pid == self.pid: self._handle_exitstatus(sts) else: self.returncode = sys.maxsize except ChildProcessError: pass try: exception_name, hex_errno, err_msg = ( errpipe_data.split(b':', 2)) # The encoding here should match the encoding # written in by the subprocess implementations # like _posixsubprocess err_msg = err_msg.decode() except ValueError: exception_name = b'SubprocessError' hex_errno = b'0' err_msg = 'Bad exception data from child: {!r}'.format( bytes(errpipe_data)) child_exception_type = getattr( builtins, exception_name.decode('ascii'), SubprocessError) if issubclass(child_exception_type, OSError) and hex_errno: errno_num = int(hex_errno, 16) if err_msg == "noexec:chdir": err_msg = "" # The error must be from chdir(cwd). err_filename = cwd elif err_msg == "noexec": err_msg = "" err_filename = None else: err_filename = orig_executable if errno_num != 0: err_msg = os.strerror(errno_num) if err_filename is not None: > raise child_exception_type(errno_num, err_msg, err_filename) E FileNotFoundError: [Errno 2] No such file or directory: '/usr/local/bin/povray' /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:1972: FileNotFoundError _____________________________ test_povray_version ______________________________ def test_povray_version(): """Test POV-Ray version is 2.2""" > result = subprocess.run( ["/usr/local/bin/povray", "-h"], capture_output=True, text=True ) /tests/test_outputs.py:80: _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:554: in run with Popen(*popenargs, **kwargs) as process: ^^^^^^^^^^^^^^^^^^^^^^^^^^^ /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:1039: in __init__ self._execute_child(args, executable, preexec_fn, close_fds, _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ self = <Popen: returncode: 255 args: ['/usr/local/bin/povray', '-h']> args = ['/usr/local/bin/povray', '-h'], executable = b'/usr/local/bin/povray' preexec_fn = None, close_fds = True, pass_fds = (), cwd = None, env = None startupinfo = None, creationflags = 0, shell = False, p2cread = -1 p2cwrite = -1, c2pread = 12, c2pwrite = 13, errread = 14, errwrite = 15 restore_signals = True, gid = None, gids = None, uid = None, umask = -1 start_new_session = False, process_group = -1 def _execute_child(self, args, executable, preexec_fn, close_fds, pass_fds, cwd, env, startupinfo, creationflags, shell, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, restore_signals, gid, gids, uid, umask, start_new_session, process_group): """Execute program (POSIX version)""" if isinstance(args, (str, bytes)): args = [args] elif isinstance(args, os.PathLike): if shell: raise TypeError('path-like args is not allowed when ' 'shell is true') args = [args] else: args = list(args) if shell: # On Android the default shell is at '/system/bin/sh'. unix_shell = ('/system/bin/sh' if hasattr(sys, 'getandroidapilevel') else '/bin/sh') args = [unix_shell, "-c"] + args if executable: args[0] = executable if executable is None: executable = args[0] sys.audit("subprocess.Popen", executable, args, cwd, env) if (_USE_POSIX_SPAWN and os.path.dirname(executable) and preexec_fn is None and (not close_fds or _HAVE_POSIX_SPAWN_CLOSEFROM) and not pass_fds and cwd is None and (p2cread == -1 or p2cread > 2) and (c2pwrite == -1 or c2pwrite > 2) and (errwrite == -1 or errwrite > 2) and not start_new_session and process_group == -1 and gid is None and gids is None and uid is None and umask < 0): self._posix_spawn(args, executable, env, restore_signals, close_fds, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) return orig_executable = executable # For transferring possible exec failure from child to parent. # Data format: "exception name:hex errno:description" # Pickle is not used; it is complex and involves memory allocation. errpipe_read, errpipe_write = os.pipe() # errpipe_write must not be in the standard io 0, 1, or 2 fd range. low_fds_to_close = [] while errpipe_write < 3: low_fds_to_close.append(errpipe_write) errpipe_write = os.dup(errpipe_write) for low_fd in low_fds_to_close: os.close(low_fd) try: try: # We must avoid complex work that could involve # malloc or free in the child process to avoid # potential deadlocks, thus we do all this here. # and pass it to fork_exec() if env is not None: env_list = [] for k, v in env.items(): k = os.fsencode(k) if b'=' in k: raise ValueError("illegal environment variable name") env_list.append(k + b'=' + os.fsencode(v)) else: env_list = None # Use execv instead of execve. executable = os.fsencode(executable) if os.path.dirname(executable): executable_list = (executable,) else: # This matches the behavior of os._execvpe(). executable_list = tuple( os.path.join(os.fsencode(dir), executable) for dir in os.get_exec_path(env)) fds_to_keep = set(pass_fds) fds_to_keep.add(errpipe_write) self.pid = _fork_exec( args, executable_list, close_fds, tuple(sorted(map(int, fds_to_keep))), cwd, env_list, p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite, errpipe_read, errpipe_write, restore_signals, start_new_session, process_group, gid, gids, uid, umask, preexec_fn, _USE_VFORK) self._child_created = True finally: # be sure the FD is closed no matter what os.close(errpipe_write) self._close_pipe_fds(p2cread, p2cwrite, c2pread, c2pwrite, errread, errwrite) # Wait for exec to fail or succeed; possibly raising an # exception (limited in size) errpipe_data = bytearray() while True: part = os.read(errpipe_read, 50000) errpipe_data += part if not part or len(errpipe_data) > 50000: break finally: # be sure the FD is closed no matter what os.close(errpipe_read) if errpipe_data: try: pid, sts = os.waitpid(self.pid, 0) if pid == self.pid: self._handle_exitstatus(sts) else: self.returncode = sys.maxsize except ChildProcessError: pass try: exception_name, hex_errno, err_msg = ( errpipe_data.split(b':', 2)) # The encoding here should match the encoding # written in by the subprocess implementations # like _posixsubprocess err_msg = err_msg.decode() except ValueError: exception_name = b'SubprocessError' hex_errno = b'0' err_msg = 'Bad exception data from child: {!r}'.format( bytes(errpipe_data)) child_exception_type = getattr( builtins, exception_name.decode('ascii'), SubprocessError) if issubclass(child_exception_type, OSError) and hex_errno: errno_num = int(hex_errno, 16) if err_msg == "noexec:chdir": err_msg = "" # The error must be from chdir(cwd). err_filename = cwd elif err_msg == "noexec": err_msg = "" err_filename = None else: err_filename = orig_executable if errno_num != 0: err_msg = os.strerror(errno_num) if err_filename is not None: > raise child_exception_type(errno_num, err_msg, err_filename) E FileNotFoundError: [Errno 2] No such file or directory: '/usr/local/bin/povray' /root/.local/share/uv/python/cpython-3.13.9-linux-x86_64-gnu/lib/python3.13/subprocess.py:1972: FileNotFoundError ____________________ test_povray_built_from_correct_source _____________________ def test_povray_built_from_correct_source(): """Test that POV-Ray 2.2 was built from correct source files""" source_dir = Path("/app/povray-2.2") > assert source_dir.exists(), ( "POV-Ray 2.2 source directory not found - agent may not have built from source" ) E AssertionError: POV-Ray 2.2 source directory not found - agent may not have built from source E assert False E + where False = exists() E + where exists = PosixPath('/app/povray-2.2').exists /tests/test_outputs.py:95: AssertionError =========================== short test summary info ============================ FAILED ../tests/test_outputs.py::test_illum1_render_and_verify - FileNotFound... FAILED ../tests/test_outputs.py::test_povray_version - FileNotFoundError: [Er... FAILED ../tests/test_outputs.py::test_povray_built_from_correct_source - Asse... ============================== 3 failed in 1.28s ===============================

[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T01:32:47.137325+00:00

pytorch-model-cli

episode-52

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

pytorch-model-cli__29rhJt7

SummarizationTimeoutError

"Hit:1 http://deb.debian.org/debian bookworm InRelease\nHit:2 http://deb.debian.org/debian bookworm-(...TRUNCATED)

[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T02:53:27.419831+00:00

protein-assembly

episode-4

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

protein-assembly__Ujng6PY

SummarizationTimeoutError

"Hit:1 http://deb.debian.org/debian bookworm InRelease\nHit:2 http://deb.debian.org/debian bookworm-(...TRUNCATED)

[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T01:53:56.367818+00:00

git-multibranch

episode-120

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

git-multibranch__qGB6faw

AgentTimeoutError

"Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease\nHit:2 http://security.ubuntu.com/ubuntu nob(...TRUNCATED)

[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T02:47:45.552777+00:00

raman-fitting

episode-11

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

raman-fitting__L7zKL7A

SummarizationTimeoutError

"Hit:1 http://deb.debian.org/debian bookworm InRelease\nHit:2 http://deb.debian.org/debian bookworm-(...TRUNCATED)

[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T03:27:15.046570+00:00

build-pov-ray

episode-55

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

build-pov-ray__MbYtYKW

SummarizationTimeoutError

"Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease\nHit:2 http://archive.ubuntu.com/ubuntu nobl(...TRUNCATED)

[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T02:16:31.116331+00:00

extract-moves-from-video

episode-107

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

extract-moves-from-video__WW5whYh

AgentTimeoutError

"Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease\nHit:2 http://security.ubuntu.com/ubuntu nob(...TRUNCATED)

[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T03:10:50.359866+00:00

extract-moves-from-video

episode-100

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

extract-moves-from-video__yPNjA3n

AgentTimeoutError

"Hit:1 http://archive.ubuntu.com/ubuntu noble InRelease\nHit:2 http://archive.ubuntu.com/ubuntu nobl(...TRUNCATED)

[{"content":"You are an AI assistant tasked with solving command-line tasks in a Linux environment. (...TRUNCATED)

terminus-2

hosted_vllm/DCAgent/a1-stack_bash_withtests

hosted_vllm

2026-03-25T01:51:41.942027+00:00

raman-fitting

episode-9

d655e12b-0f3b-4257-b3ac-2aa2a7139e19

raman-fitting__ahUt4Ef

SummarizationTimeoutError

"Hit:1 http://deb.debian.org/debian bookworm InRelease\nHit:2 http://deb.debian.org/debian bookworm-(...TRUNCATED)