input stringlengths 2.65k 237k | output stringclasses 1
value |
|---|---|
frlig.close()
countp = countp + 1
else:
continue
f.close()
# make inputfile for foldx4 with mutchain for calculating folding free energy
def inputfoldx():
os.chdir(path)
f = open(in_file + ".cleaned", 'r')
f.next()
for line in f:
ff = line.split("\t")
mut = ff[11][:-1] # GA9A
pdb = ff[8] # 1A43
with open(... | |
backend service is used by a urlMap.
response = backends.delete(project=args.project,
backendService=name).execute()
logging.info("response = %r", response)
expired.append(name)
except Exception as e: # pylint: disable=broad-except
logging.error(e)
in_use.append(name)
else:
unexpired.append(name)
if not "nex... | |
"2013-12-11T22:14:00Z",
},
{
"id": "MnePSAXVEeiR2Ef5_SqrnA",
"created": "2013-12-13T00:17:53Z",
"updated": "2013-12-13T00:17:53Z",
},
{
"id": "M2eSpAXVEeimGd_D5lc7_g",
"created": "2013-12-13T01:01:20Z",
"updated": "2013-12-13T01:01:20Z",
},
{
"id": "NCbIXgXVEei-YvOb79ehXg",
"created": "2013-12-14T03:20:48... | |
storage[ name ] = h
info( newline( '=== Added local host', h ) )
return h
def add_remote_host( self, name, user, server, **params ):
""" Adds a new remote host to the current topology and returns a
RemoteHostConfig object representing it.
- name : a textual representation of the host
- user : the name of the ... | |
method we need
# to call to hide various head parts
fix = None
# load the appropriate file
if (headStyle == "dls"):
# dog, long head, short muzzle
filePrefix = HeadDict["dls"]
headHeight = 0.75
elif (headStyle == "dss"):
# dog, short head, short muzzle
filePrefix = HeadDict["dss"]
headHeight = 0.5
elif (he... | |
from sotd_indicators.indicators import *
from arcgis.gis import GIS
from arcgis.geometry import Geometry, filters
import configparser
import time
import datetime
import shutil
import ssl
ssl._create_default_https_context = ssl._create_unverified_context
class Indicator:
def __init__(self):
# GIS Resources
self... | |
= dict()
container.update({
"name": f"{key} {datetime.utcnow().strftime(GC_DATE_FORMAT)}",
"artifacts": artifacts
})
ret_val, message, cid = self.save_container(container)
self.debug_print(f"save_container (with artifacts) returns, value: {ret_val}, reason: {message}, id: {cid}")
return ret_val, message, cid
... | |
in view_clades.')
messages.error(request, 'Sorry, the server had problems '
'updating at least on clade: %s' % e)
# Updating language clade relations for changed clades:
if cladeChanged:
updateLanguageCladeRelations()
# Adding a new clade:
elif 'addClade' in request.POST:
cladeCreationForm = CladeCreationForm(r... | |
"""Abstract classes."""
from __future__ import absolute_import
from __future__ import division
from __future__ import print_function
import os
import copy
import yaml
import random
import subprocess
import numpy as np
import tensorflow as tf
from tensorflow.contrib.tensorboard.plugins import projector
from tensorflo... | |
= None,
transcript_id: Optional[str] = None,
transcript_symbol: Optional[str] = None,
transcript_type: Optional[Biotype] = None,
sequence_guid: Optional[UUID] = None,
sequence_name: Optional[str] = None,
protein_id: Optional[str] = None,
product: Optional[str] = None,
guid: Optional[UUID] = None,
transcript_gu... | |
if U.type=='oper':
U=Ucorrection*U
inner = U.dag()*U_target
part_idx = [0, 1, 3, 4] # only computational subspace
ptrace = 0
for i in part_idx:
ptrace += inner[i, i]
dim = 4 # 2 qubits comp subspace
return np.real(((np.abs(ptrace))**2+dim*(1-L1))/(dim*(dim+1)))
elif U.type=='super':
U=qtp.to_super(Ucorrect... | |
<filename>file_knowledge/process/knowledge_extraction_sample.py
# coding=utf-8
"""
@ license: Apache Licence
@ github: invoker4zoo
@ author: invoker/cc
@ wechart: whatshowlove
@ software: PyCharm
@ file: knowledge_extraction_sample.py
@ time: $18-9-21 下午3:23
"""
import thulac
import os
import sys
sys.path.append('..')... | |
<gh_stars>10-100
#!/user/bin/env python
'''interaction_extractor.py
This class creates dataset of ligand - macromolecule and macromolecule -
macromolecule interaction information. Criteria to select interactions are
specified by the InteractionFilter.
'''
__author__ = "<NAME>"
__version__ = "0.3.0"
__status__ = "expe... | |
_host_index (int/None): specifies the index of the server
that we want to use.
Default is read from the configuration.
async_req (bool): execute request asynchronously
Returns:
[IamActor]
If the method is called asynchronously, returns the request
thread.
"""
kwargs['async_req'] = kwargs.get(
'async_req', Fa... | |
"""
Import as:
import oms.broker as ombroker
"""
import abc
import collections
import logging
from typing import Any, Dict, List, Optional, Tuple, cast
import pandas as pd
import helpers.hasyncio as hasynci
import helpers.hdbg as hdbg
import helpers.hsql as hsql
import market_data as mdata
import oms.oms_db as ooms... | |
import numpy as np
from scipy.linalg import block_diag
import math
class rJoint:
def __init__(self, alpha, a, theta, d, type, inertia, m, r):
self.alpha = alpha
self.a = a
self.theta = theta
self.d = d
self.type = type
self.inertia = inertia
self.m = m
self.r = r
class cartesian:
def __init__(self, x, y, z... | |
<reponame>chanul13/EDMFTF<filename>src/python/sjoin.py<gh_stars>1-10
#!/usr/bin/env python
import utils,indmffile,sys,re,os
import optparse
from scipy import *
import numpy
nv = map(int,numpy.__version__.split('.'))
if (nv[0],nv[1]) < (1,6):
loadtxt = io.read_array
def savetxt(filename, data):
io.write_array(filen... | |
import base64
import os
import re
import urllib.request
import xml.etree.ElementTree as ET
from datetime import datetime
from io import StringIO, BytesIO
import requests
from lxml import etree
import base.utils as utils_module
from base.models import WPS, Task, InputOutput, Artefact, Process, STATUS, Workflow, Edge
f... | |
reader = csv.reader(csvfile, delimiter=self._separator)
heads = next(reader)
# find index of each target field name
idx_cols = field2idx(cols, heads)
assert len(idx_cols) == len(cols), \
"one or more field names are not found in {}".format(self._input)
cols = idx_cols
else:
reader = csv.reader(csvfile, delimit... | |
<reponame>moble/mktheapidocs
import inspect, os, pathlib, importlib, black, re, click, enum
from numpydoc.docscrape import NumpyDocString, FunctionDoc, ClassDoc
from functools import cmp_to_key
def get_line(thing):
"""
Get the line number for something.
Parameters
----------
thing : function, class, module
Ret... | |
self.d1 = self.d_val_lead_aborp[self.energy_count]
self.b2 = self.b_val_tun_aborp[self.energy_count]
self.c2 = self.c_val_tun_aborp[self.energy_count]
self.a2 = self.a_val_tun_aborp[self.energy_count]
self.xk2 = self.Xk_val_tun_aborp[self.energy_count]
self.d2 = self.d_val_tun_aborp[self.energy_count]
s... | |
import collections
import itertools
import json
from pathlib import Path
import re
import sqlite3
import string
import attr
import nltk
import numpy as np
def clamp(value, abs_max):
value = max(-abs_max, value)
value = min(abs_max, value)
return value
def to_dict_with_sorted_values(d, key=None):
return {k: sor... | |
#!/usr/bin/python
import time
import smbus
# ===========================================================================
# ST_VL6180x ToF ranger Class
#
# Originally written by <NAME>
# References Arduino library by <NAME> of SparkFun:
# https://github.com/sparkfun/ToF_Range_Finder-VL6180_Library\
# =================... | |
# Copyright INRIM (https://www.inrim.eu)
# See LICENSE file for full licensing details.
import sys
from typing import Optional
from fastapi import FastAPI, Request, Header, HTTPException, Depends, Form
from fastapi.responses import RedirectResponse, JSONResponse
from .ContentService import ContentService
from .main.bas... | |
#
# BitBake Toaster Implementation
#
# Copyright (C) 2016 Intel Corporation
#
# SPDX-License-Identifier: GPL-2.0-only
#
# Please run flake8 on this file before sending patches
import os
import re
import logging
import json
import subprocess
from collections import Counter
from shutil import copyfile
from orm.models i... | |
<filename>nasws/cnn/policy/cnn_general_search_policies.py<gh_stars>1-10
# ========================================================
# CONFIDENTIAL - Under development
# ========================================================
# Author: <NAME> with email <EMAIL>
# All Rights Reserved.
# Last modified: 2019/11/27 下午12:05
... | |
# Copyright 2016 The TensorFlow Authors. All Rights Reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable ... | |
#!/usr/bin/env python
import pygtk
pygtk.require('2.0')
import gtk
import os, sys
import time
import cairo
import igraph
from gtk import gdk
from util import *
import logs
from math import *
import custom
from visual import *
import matplotlib.pyplot as plt
import numpy as np
import micavis.ipython as ipython
import ... | |
9, 10, 11,
f1_gyro_x, f1_gyro_y, f1_gyro_z, # 12, 13, 14,
f2_gyro_x, f2_gyro_y, f2_gyro_z, # 15, 16, 17,
f3_gyro_x, f3_gyro_y, f3_gyro_z, # 18, 19, 20,
f1_state_position, f1_state_speed, f1_state_effort, # 21, 22, 23,
f2_state_position, f2_state_speed, f2_state_effort, # 24, 25, 26,
f3_state_position, f3_state_sp... | |
temperature sensor", [636]),
},
"CartilaginousAndOsseousChange": {
"111309": ("Cartilaginous and osseous change", [6030, 6033]),
},
"CaseSensitivity": {
"111088": ("Case Sensitivity", [6048]),
},
"CaseSpecificity": {
"111090": ("Case Specificity", [6048]),
},
"CassetteBasedProjectionRadiographySystem": {
"1... | |
"""
General components.
"""
# Copyright (c) 2019 <NAME>. All rights reserved.
from typing import Tuple, List, Union, Callable
import numpy as np
import trimesh
from modeling import util
from modeling.types import Point3, Vec3, Verts2D, Verts, Faces, Mesh, MeshExtended
def surface_revolution(
xy_points: np.ndar... | |
<reponame>vsevolodpohvalenko/home-assistant
"""Click-based interface for Songpal."""
import ast
import asyncio
import json
import logging
import sys
from functools import update_wrapper
import click
from songpal import Device, SongpalException
from songpal.common import ProtocolType
from songpal.containers import Set... | |
mp.get_hist_n_bins(fh,i)
self.hist_list[-1].n_events = mp.get_hist_n_events(fh,i)
self.hist_list[-1].fs_per_bin = mp.get_hist_fs_per_bin(fh,i)
self.hist_list[-1].s_per_bin = mp.get_hist_sec_per_bin(fh,i)
self.hist_list[-1].t0_ps = mp.get_hist_t0_ps(fh,i)
self.hist_list[-1].t0_bin = mp.get_hist_t0_bin(fh,i)
se... | |
<gh_stars>1-10
from collections import Counter
import getopt
import math
import matplotlib.pyplot as plt
from matplotlib.backends.backend_pdf import PdfPages
import numpy as np
import os
import pandas as pd
import scipy.stats
import statsmodels.api as sm
import statsmodels.formula.api as smf
import sys
def get_codes(... | |
<gh_stars>10-100
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
#
#
# Copyright © 2018 Dell Inc. or its subsidiaries. All rights reserved.
# Dell, EMC, and other trademarks are trademarks of Dell Inc. or its subsidiaries.
# Other trademarks may be trademarks of their respective owners.
#
# Licensed under the Ap... | |
mod, typ, name, default = match.groups()
return mod, typ.strip(), name.strip(), default
def get_index_text(self, sig, name, typ):
rname = '{} (C# {})->{}'.format(name, _('variable'), typ)
return rname
def get_obj_name(self, sig):
_, typ, name, _ = self.parse_signature(sig)
return name, typ
class CSharpProper... | |
# -*- coding: utf-8 -*-
"""
Created on Tue May 24 20:20:03 2022
@author: d4kro
"""
#%%-----------0. loading package-----------------------------------------------
import pandas as pd
import numpy as np
import scipy.sparse
import matplotlib.pyplot as plt
from sklearn import preprocessing
from sklearn.... | |
<filename>ipvs.py
# Copyright (c) 2015-present, Facebook, Inc.
# All rights reserved.
#
# This source code is licensed under the BSD-style license found in the
# LICENSE file in the root directory of this source tree. An additional grant
# of patent rights can be found in the PATENTS file in the same directory.
"""IPV... | |
<filename>strax/storage/common.py
"""Base classes for storage backends, frontends, and savers in strax.
Please see the developer documentation for more details
on strax' storage hierarchy.
"""
from ast import literal_eval
from concurrent.futures import wait
import logging
from packaging import version
import time
impo... | |
<filename>cnosolar/gui_config.py
###############################
# CONFIGURATION GUI #
###############################
import json
import pytz
import pvlib
import requests
import traitlets
import numpy as np
import pandas as pd
import ipywidgets as widgets
from tkinter import Tk, filedialog
from IPython.display import... | |
<filename>extensions/aria_extension_tosca/simple_v1_0/functions.py
# Licensed to the Apache Software Foundation (ASF) under one or more
# contributor license agreements. See the NOTICE file distributed with
# this work for additional information regarding copyright ownership.
# The ASF licenses this file to You under t... | |
contain a valid structure: {}".format(self.job_name)
)
def db_entry(self):
"""
Generate the initial database entry
Returns:
(dict): db_dict
"""
db_dict = super(AtomisticGenericJob, self).db_entry()
if self.structure:
if isinstance(self.structure, Atoms):
parent_structure = self.structure.get_parent_basis()... | |
f:
f.write(content)
except Exception as e:
LOGERR(e)
def format_json(resultset, single_record=False, field_filter=0):
"""Return results in JSON format.
Parameters
----------
resultset : list
Search results from DB query.
single_record : bool, optional
If True, indicates only one record. Default is False.
... | |
specified axis(es).
Equivalent to CAReduce(scalar.and_, axis=axis)
"""
def __init__(self, axis=None):
CAReduce.__init__(self, scalar.and_, axis)
def _output_dtype(self, idtype):
return "int8"
def __str__(self):
if self.axis is None:
return "All"
else:
return "All{%s}" % ", ".join(map(str, self.axis))
de... | |
on channel 2 computed from CAL1.
CS_l1b_mds['Data']['R_inst_range'] = np.ma.zeros((n_records,n_blocks),dtype=np.int32)
# Instrument Gain Correction: transmit-receive antenna (dB/100)
# Calibration correction to gain on channel 1 computed from CAL1
CS_l1b_mds['Data']['TR_inst_gain'] = np.ma.zeros((n_records,n_blocks... | |
"""
This module module provides functionality to load data
from a container into memory in chunks.
"""
import gc
import random
import numpy as np
import audiomate
from audiomate import containers
from audiomate.utils import units
class PartitioningContainerLoader:
"""
Load data from one or more containers in par... | |
args):
""" Enable a host """
host = client.hosts.perform_action(args.id, 'disable')
utils.print_dict(host)
@utils.arg('id', metavar='<HOST_ID>', help='ID of host to delete')
def do_host_delete(client, args):
""" Delete a host """
host = client.hosts.delete(args.id)
utils.print_dict(host)
@utils.arg('id', meta... | |
mod_node = helper.make_node("Mod",
inputs=["x", "y"],
outputs=["z"],
fmod=fmod)
onnx_dtype = TensorProto.FLOAT if dtype == "float32" else TensorProto.INT32
graph = helper.make_graph([mod_node],
"mod_test",
inputs=[helper.make_tensor_value_info("x",
onnx_dtype, list(x_shape)),
helper.make_tensor_value_info("y"... | |
createInstance(clazz, instance_creator)
self._pyroInstances[clazz] = instance
return instance
elif instance_mode == "session":
# Create and use one instance for this proxy connection
# the instances are kept on the connection object.
# (this is the default instance mode when using new style @expose)
instance = c... | |
= 73
self._errHandler.sync(self)
la_ = self._interp.adaptivePredict(self._input,0,self._ctx)
if la_ == 1:
self.state = 70
self.declare_note()
pass
elif la_ == 2:
self.state = 71
self.declare_chord()
pass
elif la_ == 3:
self.state = 72
self.declare_melody()
pass
self.state = 77
self._errHandler.sync... | |
"""
Integration test for a battery+motor example that demonstrates phase branching in trajectories.
"""
from __future__ import print_function, division, absolute_import
import os
import unittest
from openmdao.api import Problem, pyOptSparseDriver, ScipyOptimizeDriver, DirectSolver
from openmdao.utils.assert_utils imp... | |
##
## Name: test_scrubby.py
## Purpose: Unit tests for scrubby.py
##
## Copyright (C) 2009, <NAME>, All Rights Reserved.
##
import scrubby as S
import unittest, functools
# {{ class test_scanner
class test_scanner(unittest.TestCase):
"""Low-level tests for the markup_scanner class. Only tests the internal
methods;... | |
"""
lipydomics/stats.py
<NAME>
2019/02/03
description:
A set of functions for performing statistical analyses on the lipidomics data. Generally, these functions
should produce one or more columns to associate with the data, as well as a label describing the analysis
performed (what groupings are used, normaliz... | |
pool to be deleted.
The parameter must be an identifier for the resource type:
``ResourcePool``.
:raise: :class:`com.vmware.vapi.std.errors_client.Error`
If the system reports an error while responding to the request.
:raise: :class:`com.vmware.vapi.std.errors_client.NotFound`
If the resource pool is not found.... | |
"http://www.keil.com/support/man/docs/armclang_asm/armclang_asm_pge1427897419630.htm",
"short": "Prefetch Memory (immediate)",
},
{
"instr": "PRFM",
"link": "http://www.keil.com/support/man/docs/armclang_asm/armclang_asm_pge1427897420050.htm",
"short": "Prefetch Memory (literal)",
},
{
"instr": "PRFM",
"link"... | |
dict2.get(key, default2))
for key in keys3}
return dict3
def dict_accum(*dict_list):
accumulator = defaultdict(list)
for dict_ in dict_list:
for key, val in dict_.items():
accumulator[key].append(val)
return accumulator
dict_isect = dict_intersection
def dict_filter_nones(dict_):
r"""
Removes None values
... | |
<gh_stars>10-100
# -*- coding: utf-8 -*-
import mock
from mock import call, sentinel, ANY
import odooly
from ._common import XmlRpcTestCase, OBJ
AUTH = sentinel.AUTH
ID1, ID2 = 4001, 4002
STABLE = ['uninstallable', 'uninstalled', 'installed']
def _skip_test(test_case):
pass
def imm(method, *params):
return ('ob... | |
278222430,
72996,
-61288,
278280917,
73004,
-1,
278342495,
72966,
278532263,
274501173,
-1,
278597798,
278489215,
-1,
278663327,
278531857,
-1,
-61283,
278628503,
73023,
-61282,
278675549,
73020,
-1,
278728465,
73009,
278925473,
278628503,
73012,
-1,
278890647,
73013,
279056547,
2788721... | |
self.NextName('log'),
shape=[], values=[msg_or_blob])
else:
blob = msg_or_blob
self.Print(blob, [])
def add_attribute(self, name, obj):
"""
Add `obj` to the list of attributes in this net under the given `name`.
Attributes are user-defined objects and have no pre-defined semantics.
"""
self._attr_dict[name].... | |
if data_trend_df.empty:
trend_ret_list = []
else:
trend_ret_list = score_trend_pandas_groupby(data_trend_df, filter_dataset_dict, score_type)
return Response(
{
"score_trend": trend_ret_list,
"level_distribution": {
"x": x,
"y": bin_result_list,
"z": z,
"sum_count": sum_count,
},
}
)
class LevelDistribu... | |
"""Command line interface for osxphotos """
import csv
import datetime
import json
import os
import os.path
import pathlib
import pprint
import sys
import time
import unicodedata
import click
import osxmetadata
import yaml
import osxphotos
from ._constants import (
_EXIF_TOOL_URL,
_OSXPHOTOS_NONE_SENTINEL,
_PHOT... | |
from collections import OrderedDict
import itertools
from typing import Any, Generator, List, Optional, Type
from typing import OrderedDict as ODict # Prevent naming conflicts
import bpy.types
from bpy.props import *
from nodeitems_utils import NodeItem
from arm.logicnode.arm_sockets import ArmCustomSocket
import arm... | |
then should
new joins be allowed.
Args:
roomNum (int): Index in request[rooms] for target room.
seatNum (int): Target seat number.
"""
roomNum = int(roomNum) # Arg `roomNum` is sent as unicode from browser
room = self.getRoomByNumber(roomNum)
if room is None:
self.emit('err', 'That room does not exist.')
r... | |
The protocol returned by `protocol_factory`.
Raises
------
ValueError
- If `server_host_name` parameter is given, but `ssl` isn't.
- If `ssl` parameter is given, but `server_host_name` is not.
- If `socket`'s is not an unix domain stream socket.
NotImplementedError
Not supported on windows by the library.
""... | |
],
service_endpoint=self.context.settings.get(
"default_endpoint")
)
],
)
# Create create-did message
create_did_message = CreateDIDMessage(
from_did=from_did.did,
to_did=to_did.did,
created_time=round(time.time() * 1000),
body=did_doc
)
# Sign did doc using local did verkey to prove ownership
await cr... | |
container
self.blocks = None
def reset(self):
"""set data to initial form"""
# current question id, id is blockname::qname
self.question_id = None
# current question name within that block
self.qname = None
# qform the questions get saved in
self.qform = None
# current concrete question container
self.concr... | |
<gh_stars>0
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
import os
import pdfkit
import logging
from django.shortcuts import render
from django.contrib.auth.decorators import login_required
from django.db.models import Q
from django import forms
from django.forms import ModelForm
from entidades.model... | |
<gh_stars>0
import os
import pytest
from boltons.dictutils import OMD
from boltons.iterutils import (first,
remap,
research,
default_enter,
default_exit,
get_path)
from boltons.namedutils import namedtuple
CUR_PATH = os.path.abspath(__file__)
isbool = lambda x: isinstance(x, bool)
isint = lambda x: isinstance... | |
Provide an alternate name for the status code in the
response body which can vary between services due to the spec still being in draft.
The default is `b"statusCode"`.
:type status_code_field: bytes or str
:param description_fields: Provide an alternate name for the description in the
response body which can vary... | |
instancecreated + [Instance.InstanceName]
# # #
# Instance.ReadFromFile("01", "Lumpy", 2, 25, e="n", rk=50, leadtimestructure=0, lostsale=20, capacity= 5, longtimehoizon = True )
# Instance.SaveCompleteInstanceInExelFile()
# instancecreated = instancecreated + [Instance.InstanceName]
# # #
# Instance.ReadFromFile... | |
<gh_stars>0
#!/usr/bin/env python
# vim: set fileencoding=utf-8 :
#
# Check the location of hot pixels in NRES images. This simple test will
# help identify readout problems with nres01.
#
# <NAME>
# Created: 2017-08-11
# Last modified: 2017-08-13
#-----------------------------------------------------------------------... | |
<filename>dash_docs/chapters/dash_datatable/width/index.py<gh_stars>100-1000
from collections import OrderedDict
import dash_core_components as dcc
import dash_html_components as html
import pandas as pd
import dash_table
from dash_docs import reusable_components as rc
from dash_docs import datasets
Display = rc.Crea... | |
<reponame>shamimmamun/qosftask4<filename>qosftask4.py
#!/usr/bin/env python
# coding: utf-8
# In[2]:
import numpy as np
from qiskit.circuit import QuantumCircuit
from qiskit.circuit.library import TGate, HGate, TdgGate,SGate
from qiskit.converters import circuit_to_dag, dag_to_circuit
from qiskit.transpiler.passes.s... | |
import copy
import os
import re
import sys
if sys.version_info < (2, 7):
import unittest2 as unittest
else:
import unittest
import shutil
import time
import replica_status_test
from . import session
from . import settings
from .. import lib
from .. import test
from ..configuration import IrodsConfig
from .resource_... | |
<reponame>industrial-optimization-group/offline_data_driven_moea
import numpy as np
import pickle
import os
from joblib import Parallel, delayed
import matplotlib.pyplot as plt
import csv
from IGD_calc import igd, igd_plus
from non_domx import ndx
from pygmo import hypervolume as hv
from scipy import stats
from mpl_too... | |
open(l, "a+") as f:
f.write(vector_information)
os.chdir(cwd)
def we_analysis():
"""
Runs short MD simulation for saved inpcrd files.
"""
cwd = os.getcwd()
os.chdir(cwd + "/" + "westpa_dir")
dir_list = [
"dihedral_threshold_lower",
"dihedral_threshold_upper",
"dual_threshold_lower",
"dual_threshold_up... | |
#!/usr/bin/env python
# -*- coding: utf-8 -*-
from google.appengine.ext import ndb
from google.appengine.api import users
from google.appengine.api import memcache
import datetime
import calendar
import pickle
import json
import logging
import bulbware_lib
import user_model
class BulbwareProject(ndb.Model):
app_na... | |
# Copyright 2013 The Chromium Authors. All rights reserved.
# Use of this source code is governed by a BSD-style license that can be
# found in the LICENSE file.
{
'variables': {
'verbose_libraries_build%': 0,
'instrumented_libraries_jobs%': 1,
'instrumented_libraries_cc%': '<!(cd <(DEPTH) && pwd -P)/<(make_clang_... | |
per_channel=0.5)
seen = [0, 0]
for _ in sm.xrange(200):
observed = aug.augment_image(np.zeros((1, 1, 100), dtype=np.uint8))
uq = np.unique(observed)
if len(uq) == 1:
seen[0] += 1
elif len(uq) > 1:
seen[1] += 1
else:
assert False
assert 100 - 50 < seen[0] < 100 + 50
assert 100 - 50 < seen[1] < 100 + 50
def... | |
import ast
import logging
from re import template
import warnings
import numpy as np
import pandas as pd
from idaes.core import FlowsheetBlock
from idaes.core.util.model_statistics import degrees_of_freedom
import os
from pyomo.environ import Var, Expression, NonNegativeReals, Block, ConcreteModel, Constraint, Objecti... | |
from __future__ import print_function
from __future__ import division
from __future__ import absolute_import
import os
import json
import shutil
from crds.bestrefs import BestrefsScript
from crds.tests import test_config
"""
Bestrefs has a number of command line parameters which make it operate in different modes.
... | |
<reponame>alexchartier/digital_rf
#!python
# ----------------------------------------------------------------------------
# Copyright (c) 2017 Massachusetts Institute of Technology (MIT)
# All rights reserved.
#
# Distributed under the terms of the BSD 3-clause license.
#
# The full license is in the LICENSE file, dist... | |
import pandas as pd
import numpy as np
import dash
import dash_core_components as dcc
import dash_html_components as html
import dash_table as dt
from dash.dependencies import Input, Output, State
import plotly.graph_objects as go
import plotly.express as px
import datetime
external_stylesheets = ['https://codepen.io... | |
<filename>evoMPS/tdvp_gen.py
# -*- coding: utf-8 -*-
"""
Created on Thu Oct 13 17:29:27 2011
@author: <NAME>
TODO:
- Adaptive step size.
"""
from __future__ import absolute_import, division, print_function
import copy as cp
import scipy as sp
import scipy.linalg as la
import scipy.optimize as opti
import scipy.spa... | |
import datetime
import time
import csv
from operator import attrgetter
from django.db.models import Q
from django.http import Http404
from django.views.generic import list_detail
from django.http import HttpResponseRedirect
from django.shortcuts import render_to_response, get_object_or_404
from django.core.urlresolver... | |
<filename>poc-hostapd/pub_api.py<gh_stars>10-100
"""
pub_api.py
"""
from lib import *
log.setLevel(logging.DEBUG)
NC_PT_TYPES = [
# NOTE: encrypted
'eka',
'ewd',
'eha',
'esh', 'esh2',
'ewl',
'pay', 'pay2',
# NOTE: not encrypted
'kep1', 'kep2', 'kep3', 'kep4',
'iw',
]
class RemoteAdvertiser:
"""
Used ... | |
vegan.summary_simper(simper_ret)
species_stats = self._generate_species_stats(df, simper_ret, grouping_names)
report_output = self._generate_simper_report(workspace_id, simper_ret, simper_sum,
species_stats, grouping_names)
return report_output
def perform_rarefy(self, params):
logging.info('Start performing ... | |
# not accounting for scr refresh
text_10.frameNStop = frameN # exact frame index
win.timeOnFlip(text_10, 'tStopRefresh') # time at next scr refresh
text_10.setAutoDraw(False)
# check for quit (typically the Esc key)
if endExpNow or defaultKeyboard.getKeys(keyList=["escape"]):
core.quit()
# check if ... | |
<gh_stars>1-10
import argparse
import math
import os
import pickle
import random
import sys
import numpy as np
import torch
import torch.backends.cudnn as cudnn
from torch import nn
from torch.optim import lr_scheduler
from torch.utils import data
import torchvision.transforms as transforms
import transforms as exten... | |
Professional Experience found': 'ကြ်မ္းက်င္မႈအေတြ႕အၾကံဳမေတြ႕ရွိေသးပါ',
'No Profiles currently have Configurations for this Layer': 'ဤအလႊာအတြက္သီးသန္႔စီစဥ္ထားသည့္အညႊန္းမရွိေသးပါ',
'No Projections currently defined': 'လက္ရွိသတ္မွတ္ထားသည့္ ခန္႔မွန္းေျခမ်ားမရွိေသးပါ',
'No Ratings for Skill Type': 'ကြ်မ္းက်င္မႈစံနႈန္းအမ်ိဳး... | |
import six
import os
import contextlib
import eventlet
import ConfigParser
from collections import OrderedDict
import psutil
import mysql.connector
from simpleutil.log import log as logging
from simpleutil.config import cfg
from simpleutil.utils import systemutils
import goperation
from gopdb import common
from gopd... | |
"""
XPath selectors based on lxml
"""
import sys
import six
from lxml import etree, html
from .utils import flatten, iflatten, extract_regex, shorten
from .csstranslator import HTMLTranslator, GenericTranslator
class CannotRemoveElementWithoutRoot(Exception):
pass
class CannotRemoveElementWithoutParent(Exceptio... | |
) > 0:
joint_grp = self.am.find_node( char, 'Joint_Grp' ) or [ ]
joints = mc.listRelatives( joint_grp, c = True, ad = True, typ = 'joint' )
attrs = [ 'controlSize', 'controlSizeX', 'controlSizeY', 'controlSizeZ', 'controlOffset', 'controlOffsetX', 'controlOffsetY', 'controlOffsetZ' ]
for handle in handles:
... | |
import sys
import multiprocessing as mp
import numpy as np
import time
import os
from rllab.algos.base import RLAlgorithm
import rllab.misc.logger as logger
import rllab.plotter as plotter
from rllab.misc import ext
from sandbox.ex2.parallel_trpo.sampler import WorkerBatchSampler
from sandbox.ex2.parallel_trpo.simple_... | |
* ``Vh``: (if ``full == True``) the Arnoldi basis with ``Vh.shape ==
(N, n+d-k)``.
* ``F``: (if ``full == True``) the perturbation matrix
:math:`F=-Z\hat{R}\hat{V}_n^* - \hat{V}_n\hat{R}^*Z^*`.
"""
n = self.n
n_ = self.n_
d = self.d
k = Wt.shape[1]
# get orthonormal basis of Wt and Wt^\perp
if k > 0:
Wto, _... | |
<filename>code_artyom/unet_17_depth_coord.py
#!/usr/bin/python3.6
import os, pickle, random, subprocess, sys
from typing import Any
import numpy as np, pandas as pd
from sklearn.model_selection import StratifiedKFold
from tqdm import tqdm
from skimage.io import imread, imshow
from skimage.transform import resize
f... | |
load("//ocaml:providers.bzl",
"OcamlArchiveProvider",
"OcamlImportProvider",
"OcamlSignatureProvider",
"OcamlLibraryProvider",
"OcamlModuleProvider",
"OcamlNsArchiveProvider",
"OcamlNsLibraryProvider",
"OcamlNsResolverProvider",
"PpxArchiveProvider",
"PpxExecutableProvider",
"PpxLibraryProvider",
"PpxModule... | |
"""
model selection:
trains models that classify birdsong syllables,
using algorithms and other parameters specified in config file
"""
# from standard library
import os
import copy
# from dependencies
import numpy as np
from sklearn.preprocessing import StandardScaler
from sklearn.metrics import accuracy_score
from ... | |
# -*- coding: utf-8 -*-
"""
Created on Mon Sep 17 14:32:52 2018
@author: <NAME>
Decision level ensemble classifiers of base GFMM-AGGLO-2
DecisionLevelEnsembleClassifier(numClassifier, numFold, gamma, teta, bthres, simil, sing, oper, isNorm, norm_range)
INPUT
numClassifier The number of classifiers
numFold The n... | |
<filename>matrix_calc_201128.py
#!/usr/bin/env python3
# -*- coding: utf-8 -*-
# File name: matrix_calc.py
"""
Created on Thu May 7 20:56:54 2020
@author: Neo(<EMAIL>)
Some codes for calculating various matrix & array needed in the LSQ preocess.
The normal equation is writtern as
A * x = b
where A is the normal mat... |
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