Experiment one -v2
Collection
3 items • Updated
index int64 0 210k | seq_len int64 1k 1.57M | id int64 1 1.83M | name stringlengths 8 11 | host stringlengths 0 64 | species stringlengths 7 95 | organism_name stringlengths 0 88 | location_in_host stringclasses 150
values | family stringclasses 246
values | genus stringlengths 7 26 | molecule_type stringclasses 15
values | decribtion_full stringlengths 175 3.54k | chunked_seqs stringlengths 1k 2.05k | relative_position int64 0 943 | number_of_chunks int64 1 955 | percentage_position float64 0 1 | sequence_quality float64 0 0 | __index_level_0__ int64 1 1.83M | input_ids sequencelengths 2.05k 2.05k | attention_mask sequencelengths 2.05k 2.05k |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | 7,462 | 1 | AB769152.1 | Homo sapiens | Coxsackievirus A24 | Enterovirus C | eye | Picornaviridae | Enterovirus | ssRNA(+) | AB769152.1 |Coxsackievirus A24 genomic RNA, complete genome, strain: CA24v/Okinawa/5/2011|set:AB769152|Coxsackievirus A24||2012-12-05T00:00:00Z|Department of Biological Sciences; 2085 Ozato, Nanjo, Okinawa 901-1202|Japan|Nidaira,M., Kuba,Y., Saitoh,M., Taira,K., Maeshiro,N., Mahoe,Y., Kyan,H., Takara,T., Okano,S., Kuda... | ctaccattgtgcaagctagactatgcaccaaactcatccacggagattcccataacagtgactattgcaccaatgttcacagaattcaatggactcaggaacattaccgtgcccgctactcaaggattgcctacaatgttgaccccagggtcgtcgcaatttctgacatccgatgatttccaatccccttgtgccctccccaactttgatgtgaccccaccaatacacataccaggagaggtgtttaacatgatggagctagctgagattgactcgatgattccgatgaattcagtaactggcaaggctaacacaatgga... | 1 | 5 | 0.4 | 0 | 1 | [
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11 | 2,492 | 21 | NC_007966.1 | Merremia mosaic virus | Merremia mosaic virus | Geminiviridae | Begomovirus | ssDNA(+/-) | NC_007966.1 |Merremia mosaic virus DNA B, complete sequence|GCF_000867165.1|Merremia mosaic virus||2006-04-19T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Idris,A.M., Baumann,K., Bird,J., Brown,J.K.||Merremia mosaic virus|Begomovirus|complete|Geminiviridae|ssDNA(+/-)|2492|RefSeq||DNA B||Puerto Rico|... | accggatggccgcccgccgcgccccccctggccccacatggtgcccaccagctgtgatgcactttgtaaaggtaatacgtggaacgctcgtatgcattcatttgaactaactgttaactttcttctttaatttgaattattgtcgcgctactatgaaaggttgggtcatacttacaatgattaaattgtttaacgtaatgtacgatttggagacgtggaccagttataaccattatacatcgtcaaattagtttgccgtctctttaagatctatatatatatatgcttgaacgtggagttatgtaaacatatattttatt... | 0 | 2 | 0.5 | 0 | 21 | [
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13 | 27,410 | 33 | KF530114.1 | Homo sapiens | Human coronavirus NL63 | Human coronavirus NL63 | Coronaviridae | Alphacoronavirus | ssRNA(+) | KF530114.1 |Human coronavirus NL63 strain NL63/human/USA/891-4/1989, complete genome|set:KF530114|Human coronavirus NL63||2013-10-07T00:00:00Z|J. Craig Venter Institute|USA|Town,C.D., Halpin,R.A., Ransier,A., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katz... | gaacaaccttttgaagaagttgaacatgtgctctcaattaaacaacctttttctttttcttttagagatgaattgggtgttcgtgttttagatcaatctgataataattgttggattagtaccacacttgtacagttgcaacttacaaagcttttggatgattctattgagatgcaattgtttaaagttggtaaagttgattcaattgtccaaaagtgttatgagttgtctcatttaattagtggttcacttggtgatagtggtaaacttcttagtgaacttcttaaagaaaaatatacatgttctataacttttgagat... | 2 | 17 | 0.2 | 0 | 33 | [
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13 | 27,410 | 34 | KF530114.1 | Homo sapiens | Human coronavirus NL63 | Human coronavirus NL63 | Coronaviridae | Alphacoronavirus | ssRNA(+) | KF530114.1 |Human coronavirus NL63 strain NL63/human/USA/891-4/1989, complete genome|set:KF530114|Human coronavirus NL63||2013-10-07T00:00:00Z|J. Craig Venter Institute|USA|Town,C.D., Halpin,R.A., Ransier,A., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katz... | actgttttaagaatgataatgtagttttgaaaattactgaagatggtattaatgttaaagatgttgttgttgagtcttctaagtcacttggtaaacaattgggtgttgtgagtgatggtgttgactcttttgaaggtgttttacctattaatactgatactgtcttatctgtagctccagaagttgactgggttgctttttatggttttgaaaaggcagcactttttgcttctttggatgtaaagccatatggttaccctaatgattttgttggtggttttagagttcttgggaccaccgacaataattgttgggttaat... | 3 | 17 | 0.2 | 0 | 34 | [
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13 | 27,410 | 43 | KF530114.1 | Homo sapiens | Human coronavirus NL63 | Human coronavirus NL63 | Coronaviridae | Alphacoronavirus | ssRNA(+) | KF530114.1 |Human coronavirus NL63 strain NL63/human/USA/891-4/1989, complete genome|set:KF530114|Human coronavirus NL63||2013-10-07T00:00:00Z|J. Craig Venter Institute|USA|Town,C.D., Halpin,R.A., Ransier,A., Fedorova,N., Tsitrin,T., Stockwell,T., Amedeo,P., Appalla,L., Bishop,B., Edworthy,P., Gupta,N., Hoover,J., Katz... | tgatgcaataatcattgataatgatatcaatgattatgttagtgatgcagattttagcattacaggtgattgtgctactgtttaccttgaagataagtttgacttacttatttctgatatgtatgatggtagaattaaattctgtgatggtgaaaacgtctctaaagatgggttttttacttatcttaatggtgttattagagaaaaattagctattggtggtagtgttgccattaagattacagaatatagttggaataagtatctttatgaattaatacaaaaatttgctttttggactttgttttgcacgtctgtta... | 12 | 17 | 0.8 | 0 | 43 | [
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16 | 9,041 | 57 | PP487955.1 | Macaca mulatta | Simian immunodeficiency virus | Simian immunodeficiency virus | Retroviridae | Lentivirus | ssRNA-RT | PP487955.1 |Simian immunodeficiency virus isolate H36J.PBMC.06MAR19.P4B19.group3, complete genome||Simian immunodeficiency virus||2024-03-22T00:00:00Z|Frederick National Laboratory, AIDS and Cancer Virus Program|USA|Keele,B.F., Immonen,T.T., Fennessey,C.M.|H36J.PBMC.06MAR19.P4B19.group3|Simian immunodeficiency virus|Le... | ctggaaacagtggagaagagacaataggagaggccttcgaatggctaaacagaacagtagaggagataaacagagaggcggtaaaccacctaccaagggagctaattttccaggtttggcaaaggtcttgggaatactggcatgatgaacaagggatgtcaccaagctatgtaaaatacagatacttgtgtttaatacaaaaggctttatttatgcattgcaagaaaggctgtagatgtctaggggaaggacatggggcagggggatggagaccaggacctcctcctcctccccctccaggactagcataaatggaagaa... | 3 | 6 | 0.7 | 0 | 57 | [
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21 | 38,846 | 66 | OL964739.1 | Escherichia | Escherichia phage T7 | Teseptimavirus T7 | Autographiviridae | Teseptimavirus | dsDNA | OL964739.1 |Mutant Escherichia phage T7 clone T7_5t1, complete genome||Escherichia phage T7||2022-01-31T00:00:00Z|SIAT, iSynBio|China|Yuans,S., Ma,Y.||Teseptimavirus T7|Teseptimavirus|complete|Autographiviridae|dsDNA|38846|GenBank|||||||Escherichia|||| | tcaagatgctcggtaatggtcacttctcggctgcttatagtcacccgctgctacctaacagagtgattaaggtgggctttaagaaagaggattcaggcgcagcctataccgcattctgccgcatgtatcagggtcgtcctggtatccctaacgtctacgatgtacagcgccacgctggatgctatacggtggtacttgacgcacttaaggattgcgagcgtttcaacaatgatgcccattataaatacgctgagattgcaagcgacatcattgattgcaattcggatgagcatgatgagttaactggatgggatggtgag... | 1 | 24 | 0.1 | 0 | 66 | [
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21 | 38,846 | 74 | OL964739.1 | Escherichia | Escherichia phage T7 | Teseptimavirus T7 | Autographiviridae | Teseptimavirus | dsDNA | OL964739.1 |Mutant Escherichia phage T7 clone T7_5t1, complete genome||Escherichia phage T7||2022-01-31T00:00:00Z|SIAT, iSynBio|China|Yuans,S., Ma,Y.||Teseptimavirus T7|Teseptimavirus|complete|Autographiviridae|dsDNA|38846|GenBank|||||||Escherichia|||| | ggcttcgttatgttgctgaggatggtaagattcatggttctgttaaccctaatggagcagttacgggtcgtgcgacccatgcgttcccaaaccttgcgcaaattccgggtgtacgttctccttatggagagcagtgtcgcgctgcttttggcgctgagcaccatttggatgggataactggtaagccttgggttcaggctggcatcgacgcatccggtcttgagctacgctgcttggctcacttcatggctcgctttgataacggcgagtacgctcacgagattcttaacggcgacatccacactaagaaccagatagct... | 9 | 24 | 0.4 | 0 | 74 | [
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21 | 38,846 | 78 | OL964739.1 | Escherichia | Escherichia phage T7 | Teseptimavirus T7 | Autographiviridae | Teseptimavirus | dsDNA | OL964739.1 |Mutant Escherichia phage T7 clone T7_5t1, complete genome||Escherichia phage T7||2022-01-31T00:00:00Z|SIAT, iSynBio|China|Yuans,S., Ma,Y.||Teseptimavirus T7|Teseptimavirus|complete|Autographiviridae|dsDNA|38846|GenBank|||||||Escherichia|||| | gctctggtggagcagtacgtaaacagtgtcattgagtacgctggtggtcgtgaacgttttgatgcactgtataaccaccttgagacgcacaaccctgaggctgcacagtcgctggataatgcgttgaccaatcgtgacttagcgaccgttaaggctatcatcaacttggctggtgagtctcgcgctaaggcgttcggtcgtaagccaactcgtagtgtgactaatcgtgctattccggctaaacctcaggctaccaagcgtgaaggctttgcggaccgtagcgagatgattaaagctatgagtgaccctcggtatcgcac... | 13 | 24 | 0.6 | 0 | 78 | [
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22 | 17,826 | 92 | MG203878.1 | Miniopterus griveaudi | bat paramyxovirus 17770 | Jeilongvirus madagascarense | spleen, abdominal cavity | Paramyxoviridae | Jeilongvirus | ssRNA(-) | MG203878.1 |Bat paramyxovirus 17770 strain Bat-PV-17770, complete genome|set:MG203878|bat paramyxovirus 17770||2019-10-19T00:00:00Z|Universite de La Reunion, UMR PIMIT|France|Pascalis,H., Melade,J., Piorkowski,G., Turpin,M., Temmam,S., Ghawar,W., Goodman,S.M., Mavingui,P., de Lamballerie,X.N., Dellagi,K.||Jeilongvirus ... | tgtcattctggctggtgttattgttaacctatcttataatgaattaagcaagaaaattgacaatgaaaatgaacagatatatcttatgatgcaaaaattatacactaagtgcaaggagaatccgatggattttgattggacaacggctatcttccagagaatcgaagaagctgagtataaaatttccgacaagacagcacagaagatcatgcaatcattcgacaagagattcaaacatgcaatcaatgaagggaaaatatctgatgattctctcttcaagttccatgtcaaatttgataaggcagaaggtcttgagattg... | 4 | 11 | 0.5 | 0 | 92 | [
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23 | 1,821 | 99 | MT831939.1 | Anatidae | Goose circovirus | Circovirus goose | Circoviridae | Circovirus | ssDNA(+/-) | MT831939.1 |Goose circovirus strain GoCV/290/GD/2020, complete genome||Goose circovirus||2021-08-15T00:00:00Z|Foshan University, College of Life Science and Engineering|China|Wang,H., Hu,C.P., Wang,J.H., Zhu,W.J., Chen,J.D., Zhang,J.P.||Circovirus goose|Circovirus|complete|Circoviridae|ssDNA(+/-)|1821|GenBank||||China|... | accggcgcctgtactccgtactccgcgctctacggggaagccgctcgccgcactcaagcagaagcctgactatggcgaaaagcagcaactacgcttacaagaggtgggtcttcacgattaataaccctacctttgaagattattgtgcggttgtcgagttctgcaatctggataactgcaagttcgcgattgttggcgaagaaaaaggggagagagaagggacacctcacctgcagggattcctgagtctgcgaaagaatgcgaaagctgctgcgcttgaagagaagctgggaggaagagcctggctgtctcgagctcgg... | 0 | 2 | 0.5 | 0 | 99 | [
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26 | 3,929 | 104 | NC_015227.2 | Lespedeza procumbens | Trailing lespedeza virus 1 | Tralespevirus lespedezae | plant leaf | Tombusviridae | Tralespevirus | ssRNA(+) | NC_015227.2 |Trailing lespedeza virus 1 isolate 06TGP01091, complete genome|GCF_000892335.1|Trailing lespedeza virus 1||2011-03-21T00:00:00Z|National Center for Biotechnology Information, NIH|USA|Adams,M.J., Lefkowitz,E.J., King,A.M., Bamford,D.H., Breitbart,M., Davison,A.J., Ghabrial,S.A., Gorbalenya,A.E., Knowles,N.J... | ggtatctgtttgccgacaataccacgatgtttcgcgatttgtgccgatacgctagtcagatagtggttggtagcacagtgctggctgtgaatgttagtgttttgtccgtagctgtacaacttcggggtgcagtggcggtctatgaagtggccagtaaatgtgtgacagcgctggaagactgcgtttccgatcttcgtgattcgctgaagccagttcccgacgagctgtacaatccttccttgtgtgcggctctgcgtatgaataacactgacacagaactaacagctgaagaccttttaaccacagacagagttttggtc... | 0 | 3 | 0.3 | 0 | 104 | [
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27 | 13,286 | 107 | MN306028.1 | Homo sapiens | Human metapneumovirus | Metapneumovirus hominis | Pneumoviridae | Metapneumovirus | ssRNA(-) | MN306028.1 |Human metapneumovirus strain HMPV/Seattle/USA/SC0380/2019, complete genome|set:MN306028|Human metapneumovirus|SRR17439936|2019-08-25T00:00:00Z|UW Virology, Laboratory Medicine|USA|Lin,M.J., Tait,A., Greninger,A.L.||Metapneumovirus hominis|Metapneumovirus|complete|Pneumoviridae|ssRNA(-)|13286|GenBank||||USA|... | tggagaaagatgctctagacttgctttcagacaatgaagaggaagatgcagaatcttcaatcttaaccttcgaagaaagagatacctcatcattaagcattgaggccagactagaatcgattgaggagaaattaagcatgatactagggctattaagaacactcaacattgccacagcaggacccacagcagcaagagatgggatcagagatgcaatgattggcataagggaagaactaatagcagacataataaaagaagccaggggaaaagcagcagaaatgatggaagaggaaatgaaccaacggacaaaaatagga... | 1 | 9 | 0.2 | 0 | 107 | [
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28 | 2,912 | 114 | MN771493.1 | Homo sapiens | TTV-like mini virus | TTV-like mini virus | Anelloviridae | Betatorquevirus | ssDNA(-) | MN771493.1 |MAG: TTV-like mini virus isolate SAfiA-697-2, complete genome||TTV-like mini virus||2021-12-19T00:00:00Z|University Hospitals of Geneva, Laboratory of Virology|Switzerland|Cordey,S., Laubscher,F., Hartley,M.A., Junier,T., Keitel,K., Docquier,M., Guex,N., Iseli,C., Vieille,G., Le Mercier,P., Gleizes,A., Sama... | aaaaaccacaaaatttacattgccgaccacaaacgaacagcaaaaccacatattttgcattgccgaccacaaacgaacaggaaaaccacaaaatttgcattgccgaccacaaaccgttctatgctaattaacttcttctttttttcctttacttccctaaaaattaattattaatcagcgtcatagaggcgtgtcctctttgctatatattcaatagtaggtccgaatggcagagtttatgccgccagacggagacgggagcacttcagtgactccaggctgatcttgggcgggtgccgaaggtgagtgaaaccaccgta... | 0 | 2 | 0.5 | 0 | 114 | [
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30 | 150,317 | 117 | OR134833.1 | Bos taurus | Lumpy skin disease virus | Lumpy skin disease virus | skin | Poxviridae | Capripoxvirus | dsDNA | OR134833.1 |Lumpy skin disease virus strain LSDV/Albania/1573/2016, complete genome||Lumpy skin disease virus||2023-10-22T00:00:00Z|Sciensano, Exotic and vector-borne diseases|Belgium|Mathijs,E., Van Borm,S., Vandenbussche,F., Koleci,X., Vodica,A.||Lumpy skin disease virus|Capripoxvirus|complete|Poxviridae|dsDNA|150317... | tataaagttgttttgtgtttcttctttggaacaatcatcatgtgcgaaaattttaaatccatttccctctgttagaagtcctccaggtccttgaattttataacagccagttttaatcgctctaaaattctctgtttggatacataatcctacttcgatttcccatgtgttattttcttcttctgtgcatctctttattgatattccgcttacactactagtaaaaatgaatagttgcaaaaagaaaatgaacaaagttaatgatgacatattggttggttgttttgacgtattgacgacacaaaccacctcgatactac... | 1 | 92 | 0 | 0 | 117 | [
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30 | 150,317 | 121 | OR134833.1 | Bos taurus | Lumpy skin disease virus | Lumpy skin disease virus | skin | Poxviridae | Capripoxvirus | dsDNA | OR134833.1 |Lumpy skin disease virus strain LSDV/Albania/1573/2016, complete genome||Lumpy skin disease virus||2023-10-22T00:00:00Z|Sciensano, Exotic and vector-borne diseases|Belgium|Mathijs,E., Van Borm,S., Vandenbussche,F., Koleci,X., Vodica,A.||Lumpy skin disease virus|Capripoxvirus|complete|Poxviridae|dsDNA|150317... | ttttcccattttcatcttcttctgttatagatgatccaaaatcaattaatattttaactatttcaggttcgacattcttgttaaaagaaagataatgagctagtgctgataaattattatctctagttttaaaatttatatcggatccattttctatgagaaattttaatatttcaacattaactttatctttttcaacacacgaaaacaatggcgtttcatataagtcgttacaatcattaacaaattttatccatttctttactccatttatatcatcttgttcaacgtaataaaataatggattacaatatctataa... | 5 | 92 | 0.1 | 0 | 121 | [
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30 | 150,317 | 126 | OR134833.1 | Bos taurus | Lumpy skin disease virus | Lumpy skin disease virus | skin | Poxviridae | Capripoxvirus | dsDNA | OR134833.1 |Lumpy skin disease virus strain LSDV/Albania/1573/2016, complete genome||Lumpy skin disease virus||2023-10-22T00:00:00Z|Sciensano, Exotic and vector-borne diseases|Belgium|Mathijs,E., Van Borm,S., Vandenbussche,F., Koleci,X., Vodica,A.||Lumpy skin disease virus|Capripoxvirus|complete|Poxviridae|dsDNA|150317... | tttctaaaaaagaaataggatgtaatattgatatttttaacctaaatttatcacacgtatttttattacaacatataataaattcttctaatgtattataaaattctttatctgtttctatttctggatatgtttttaaaagtgtatgaatgaaaaaatgaaaatcgtagtaccaattatgttcaacttttatattattttttatttttttatttattatgtttgcaacctgtgaaaagtcaaaatcatttaaacaagcttttataggttcattaaaaatataagtattttcatttaatgatatttttattgattcgtcc... | 10 | 92 | 0.1 | 0 | 126 | [
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