Upload folder using huggingface_hub
Browse files- MSD_test/dataset_summary.csv +11 -0
- MSD_test/images/BRATS_374.nii.gz +3 -0
- MSD_test/images/colon_218.nii.gz +3 -0
- MSD_test/images/hepaticvessel_087.nii.gz +3 -0
- MSD_test/images/hippocampus_318.nii.gz +3 -0
- MSD_test/images/la_005.nii.gz +3 -0
- MSD_test/images/liver_43.nii.gz +3 -0
- MSD_test/images/lung_078.nii.gz +3 -0
- MSD_test/images/pancreas_058.nii.gz +3 -0
- MSD_test/images/prostate_14.nii.gz +3 -0
- MSD_test/images/spleen_49.nii.gz +3 -0
- MSD_test/labels/BRATS_374.nii.gz +3 -0
- MSD_test/labels/colon_218.nii.gz +3 -0
- MSD_test/labels/hepaticvessel_087.nii.gz +3 -0
- MSD_test/labels/hippocampus_318.nii.gz +3 -0
- MSD_test/labels/la_005.nii.gz +3 -0
- MSD_test/labels/liver_43.nii.gz +3 -0
- MSD_test/labels/lung_078.nii.gz +3 -0
- MSD_test/labels/pancreas_058.nii.gz +3 -0
- MSD_test/labels/prostate_14.nii.gz +3 -0
- MSD_test/labels/spleen_49.nii.gz +3 -0
- MSD_test/msd_processing_errors.txt +0 -0
- MSD_test/nifti_mappings.json +319 -0
MSD_test/dataset_summary.csv
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Dataset,Total Samples,With Label,Without Label,ROI(s),Modalities,Tasks,Unique Sizes
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BRATS,1,1,0,head,MRI,registration; segmentation,1
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LeftAtrium,1,1,0,thorax,MRI,segmentation,1
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Liver,1,1,0,abdomen,CT,segmentation,1
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Hippocampus,1,1,0,head,MRI,segmentation,1
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PROSTATE,1,1,0,pelvis,MRI,registration; segmentation,1
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| 7 |
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Lung,1,1,0,thorax,CT,segmentation,1
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| 8 |
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Pancreas,1,1,0,abdomen,CT,segmentation,1
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| 9 |
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HepaticVessel,1,1,0,abdomen,CT,segmentation,1
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| 10 |
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Spleen,1,1,0,abdomen,CT,segmentation,1
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| 11 |
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Colon,1,1,0,abdomen,CT,segmentation,1
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MSD_test/images/BRATS_374.nii.gz
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size 8831151
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MSD_test/images/colon_218.nii.gz
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size 126796944
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MSD_test/images/hepaticvessel_087.nii.gz
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size 67789086
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MSD_test/images/hippocampus_318.nii.gz
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size 77628
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MSD_test/images/la_005.nii.gz
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size 27992598
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MSD_test/images/liver_43.nii.gz
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size 38887581
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MSD_test/images/lung_078.nii.gz
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MSD_test/images/pancreas_058.nii.gz
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MSD_test/images/prostate_14.nii.gz
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size 50419214
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MSD_test/images/spleen_49.nii.gz
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MSD_test/labels/BRATS_374.nii.gz
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size 18463
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MSD_test/labels/colon_218.nii.gz
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size 538578
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MSD_test/labels/hepaticvessel_087.nii.gz
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size 110537
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MSD_test/labels/hippocampus_318.nii.gz
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size 976
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MSD_test/labels/la_005.nii.gz
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MSD_test/labels/liver_43.nii.gz
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size 148390
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MSD_test/labels/lung_078.nii.gz
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MSD_test/labels/pancreas_058.nii.gz
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MSD_test/labels/prostate_14.nii.gz
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MSD_test/labels/spleen_49.nii.gz
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MSD_test/msd_processing_errors.txt
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MSD_test/nifti_mappings.json
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{
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"/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/images/BRATS_374.nii.gz": {
|
| 3 |
+
"Modality": "MRI",
|
| 4 |
+
"OriImg_path": "/home/jachin/data/Github/data/data_gen_def/DATASETS/MSD/Task01_BrainTumour/imagesTr/BRATS_374.nii.gz",
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| 5 |
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"Spacing_mm": 1.0,
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| 6 |
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"Size": [
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| 7 |
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240,
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| 8 |
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240,
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| 9 |
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155,
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| 10 |
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4
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],
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| 12 |
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"Sub_modality": {
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| 13 |
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"0": "FLAIR",
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| 14 |
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"1": "T1w",
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| 15 |
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"2": "t1gd",
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| 16 |
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"3": "T2w"
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| 17 |
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},
|
| 18 |
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"Dataset_name": "BRATS",
|
| 19 |
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"ROI": "head",
|
| 20 |
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"Task": [
|
| 21 |
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"segmentation",
|
| 22 |
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"registration"
|
| 23 |
+
],
|
| 24 |
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"Label_path": {
|
| 25 |
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"segmentation": {
|
| 26 |
+
"BRATS_374": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/BRATS_374.nii.gz"
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| 27 |
+
},
|
| 28 |
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"registration": {
|
| 29 |
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"BRATS_374": "/home/jachin/data/Github/data/data_gen_def/DATASETS_processed/MSD_test/labels/BRATS_374.nii.gz"
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