| ---
|
| license: other
|
| language:
|
| - en
|
| task_categories:
|
| - image-segmentation
|
| tags:
|
| - medical-image-segmentation
|
| - medical-imaging
|
| - vision-language
|
| - wpvlmedseg
|
| pretty_name: W-PVLMedSeg Datasets
|
| size_categories:
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| - 100K<n<1M
|
| ---
|
|
|
| # W-PVLMedSeg Datasets
|
|
|
| This dataset repository contains the biomedical image segmentation datasets used by
|
| W-PVLMedSeg, packaged as one zip archive per dataset. The archive contents preserve
|
| the project layout:
|
|
|
| ```text
|
| <DATASET>/
|
| Prompts_Folder/
|
| Train_Folder/
|
| img/
|
| label/
|
| Val_Folder/
|
| img/
|
| label/
|
| Test_Folder/
|
| img/
|
| label/
|
| ```
|
|
|
| Download all archives with:
|
|
|
| ```bash
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| huggingface-cli download DanRuguo/W-PVLMedSeg-Datasets --repo-type dataset --local-dir data_zips
|
| ```
|
|
|
| Then unzip each archive into the project `data/` directory so paths such as
|
| `data/BUSI/Train_Folder/` are available to the training configs.
|
|
|
| ## Contents
|
|
|
| - Total archived size: 11.22 GB
|
| - Manifest with archive checksums: `manifest.json`
|
|
|
| | Dataset | Modality | Organ | Files | Zip | Source |
|
| |:--|:--|:--|--:|--:|:--|
|
| | `BKAI` | Endoscopy | Colon | 2005 | 1.36 GB | [source](https://arxiv.org/abs/2107.05023) |
|
| | `BRISC` | MRI | Brain | 12007 | 783.04 MB | [source](https://arxiv.org/abs/2506.14318) |
|
| | `BTMRI` | MRI | Brain | 10141 | 582.86 MB | [source](https://figshare.com/articles/dataset/brain_tumor_dataset/1512427) |
|
| | `BUID` | Ultrasound | Breast | 471 | 57.27 MB | [source](https://www.sciencedirect.com/science/article/pii/S0010482522011465) |
|
| | `BUSBRA` | Ultrasound | Breast | 3757 | 127.72 MB | [source](https://aapm.onlinelibrary.wiley.com/doi/10.1002/mp.16812) |
|
| | `BUSI` | Ultrasound | Breast | 1573 | 160.19 MB | [source](https://pubmed.ncbi.nlm.nih.gov/31867417/) |
|
| | `BUSUC` | Ultrasound | Breast | 1629 | 46.81 MB | [source](https://www.sciencedirect.com/science/article/pii/S0952197623014768) |
|
| | `ClinicDB` | Endoscopy | Colon | 1231 | 52.69 MB | [source](https://refbase.cvc.uab.es/files/BSF2015.pdf) |
|
| | `ColonDB` | Endoscopy | Colon | 767 | 91.41 MB | [source](https://ieeexplore.ieee.org/document/7294676) |
|
| | `Covid19` | X-ray | Chest | 18525 | 209.87 MB | [source](https://arxiv.org/abs/2202.10185) |
|
| | `CVC300` | Endoscopy | Colon | 139 | 16.51 MB | [source](https://arxiv.org/abs/1612.00799) |
|
| | `EUS` | Ultrasound | Pancreas | 76341 | 4.58 GB | [source](https://www.spiedigitallibrary.org/conference-proceedings-of-spie/11583/2581321/Endoscopic-ultrasound-database-of-the-pancreas/10.1117/12.2581321.full) |
|
| | `ISIC` | Dermatoscopy | Skin | 2569 | 2.65 GB | [source](https://arxiv.org/abs/1902.03368) |
|
| | `Kvasir` | Endoscopy | Colon | 2013 | 339.57 MB | [source](https://arxiv.org/abs/1911.07069) |
|
| | `UDIAT` | Ultrasound | Breast | 333 | 19.40 MB | [source](https://www.sciencedirect.com/science/article/pii/S174680942030183X) |
|
| | `UWaterlooSkinCancer` | Dermatoscopy | Skin | 454 | 213.18 MB | [source](https://ieeexplore.ieee.org/document/6937161) |
|
|
|
| ## Notes
|
|
|
| These archives aggregate public research datasets and prompt files used for
|
| W-PVLMedSeg experiments. Please review and follow the license and usage terms of
|
| each original dataset source before redistribution, clinical use, or commercial use.
|
|
|
