query stringlengths 53 153 | positive listlengths 1 7 | negative listlengths 3 5 | system stringlengths 50 956 |
|---|---|---|---|
What is the biomedical concept corresponding to 'il10'? | [
"il10 (homo sapiens)",
"interleukin 10 (homo sapiens)"
] | [
"il10 (mus musculus)",
"il10 (rattus norvegicus)",
"interleukin 10 (mus musculus)",
"il10b (homo sapiens)",
"il-10 (mus musculus)"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'il13'? | [
"il13 (homo sapiens)",
"interleukin 13 (homo sapiens)",
"il-13 (homo sapiens)"
] | [
"il13 (mus musculus)",
"il13 (rattus norvegicus)",
"interleukin 13 (mus musculus)",
"il13 (ovis aries)",
"il-13 (mus musculus)"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'il18'? | [
"il18 (homo sapiens)",
"interleukin 18 (homo sapiens)",
"il-18 (homo sapiens)"
] | [
"il18 (mus musculus)",
"il18 (rattus norvegicus)",
"interleukin 18 (mus musculus)",
"il-18 (mus musculus)",
"il1f8 (homo sapiens)"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'lta'? | [
"lta (homo sapiens)",
"lt (homo sapiens)"
] | [
"lta (mus musculus)",
"lta (rattus norvegicus)",
"lt (mus musculus) (lymphotoxin a (mus musculus))",
"ltalpha (mus musculus)",
"lt[a] (mus musculus)"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'mpo'? | [
"mpo (homo sapiens)",
"myeloperoxidase (homo sapiens)"
] | [
"mpo (mus musculus)",
"myeloperoxidase (mus musculus)",
"mpo (rattus norvegicus)",
"myeloperoxidase (rattus norvegicus)",
"mpo (ovis aries)"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'nos2a'? | [
"nos2 (homo sapiens) (nitric oxide synthase 2 (homo sapiens))",
"nitric oxide synthase 2 (homo sapiens)"
] | [
"nos2a (rattus norvegicus)",
"nos2 (mus musculus) (nitric oxide synthase 2, inducible (mus musculus))",
"nos-2a (mus musculus)",
"nos2a (danio rerio)",
"nos2 (rattus norvegicus) (nitric oxide synthase 2 (rattus norvegicus))"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'nos3'? | [
"nos3 (homo sapiens) (nitric oxide synthase 3 (homo sapiens))",
"nitric oxide synthase 3 (homo sapiens)"
] | [
"nos3 (mus musculus) (nitric oxide synthase 3, endothelial cell (mus musculus))",
"nos3 (rattus norvegicus)",
"nos3 (homo sapiens) (nanos c2hc-type zinc finger 3 (homo sapiens))",
"nitric oxide synthase 3 (rattus norvegicus)",
"nos3 (mus musculus) (nanos c2hc-type zinc finger 3 (mus musculus))"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'ppard'? | [
"ppard (homo sapiens)",
"peroxisome proliferator activated receptor delta (homo sapiens)"
] | [
"ppard (mus musculus)",
"ppard (rattus norvegicus)",
"peroxisome proliferator activator receptor delta (mus musculus)",
"ppar-delta (mus musculus)",
"ppardelta (mus musculus)"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'pparg'? | [
"pparg (homo sapiens)",
"ppargamma (homo sapiens)",
"pparg2 (homo sapiens)",
"peroxisome proliferator activated receptor gamma (homo sapiens)"
] | [
"pparg (mus musculus)",
"pparg (rattus norvegicus)",
"ppargamma (mus musculus)",
"ppar (mus musculus)",
"ppar (homo sapiens)"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'ppargc1'? | [
"ppargc1 (homo sapiens)",
"ppargc1a (homo sapiens)",
"pgc1 (homo sapiens)"
] | [
"ppargc1 (mus musculus)",
"ppargc1 (rattus norvegicus)",
"ppargc1a (mus musculus)",
"pgcc1 (homo sapiens)",
"pgcc1 (mus musculus)"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'tnf'? | [
"tnf (homo sapiens)",
"tumor necrosis factor (homo sapiens)",
"tnfa (homo sapiens)"
] | [
"tnf (mus musculus)",
"tnf (rattus norvegicus)",
"tnf-alpha (mus musculus)",
"tumor necrosis factor (mus musculus)",
"tnf-a (mus musculus)"
] | Given the context 'The genes in which SNPs were analyzed include CCR2, CCR5, COX1, COX2, CRP, CSF1, CSF2, IFNG, IL1A, IL1B, IL2, IL4, IL6, IL8, IL10, IL13, IL18, LTA, MPO, NOS2A, NOS3, PPARD, PPARG, PPARGC1 and TNF.', answer the user's query. |
What is the biomedical concept corresponding to 'tnf'? | [
"tnf (homo sapiens)",
"tumor necrosis factor (homo sapiens)",
"tnfa (homo sapiens)"
] | [
"tnf (mus musculus)",
"tnf (rattus norvegicus)",
"tnf-alpha (mus musculus)",
"tumor necrosis factor (mus musculus)",
"tnf-a (mus musculus)"
] | Given the context 'Genotype frequencies did not differ by sex except for TNF(rs1799724), IL2(rs2069762), IL10(rs1800890), PPARG(rs1801282), and CRP(rs1800947) with differences of less than 4%.', answer the user's query. |
What is the biomedical concept corresponding to 'il2'? | [
"il2 (homo sapiens)",
"interleukin 2 (homo sapiens)",
"il-2 (homo sapiens)"
] | [
"il2 (mus musculus)",
"interleukin 2 (mus musculus)",
"il2 (rattus norvegicus)",
"il-2 (mus musculus)",
"interleukin 2 (rattus norvegicus)"
] | Given the context 'Genotype frequencies did not differ by sex except for TNF(rs1799724), IL2(rs2069762), IL10(rs1800890), PPARG(rs1801282), and CRP(rs1800947) with differences of less than 4%.', answer the user's query. |
What is the biomedical concept corresponding to 'il10'? | [
"il10 (homo sapiens)",
"interleukin 10 (homo sapiens)"
] | [
"il10 (mus musculus)",
"il10 (rattus norvegicus)",
"interleukin 10 (mus musculus)",
"il10b (homo sapiens)",
"il-10 (mus musculus)"
] | Given the context 'Genotype frequencies did not differ by sex except for TNF(rs1799724), IL2(rs2069762), IL10(rs1800890), PPARG(rs1801282), and CRP(rs1800947) with differences of less than 4%.', answer the user's query. |
What is the biomedical concept corresponding to 'pparg'? | [
"pparg (homo sapiens)",
"ppargamma (homo sapiens)",
"pparg2 (homo sapiens)",
"peroxisome proliferator activated receptor gamma (homo sapiens)"
] | [
"pparg (mus musculus)",
"pparg (rattus norvegicus)",
"ppargamma (mus musculus)",
"ppar (mus musculus)",
"ppar (homo sapiens)"
] | Given the context 'Genotype frequencies did not differ by sex except for TNF(rs1799724), IL2(rs2069762), IL10(rs1800890), PPARG(rs1801282), and CRP(rs1800947) with differences of less than 4%.', answer the user's query. |
What is the biomedical concept corresponding to 'crp'? | [
"crp (homo sapiens) (c-reactive protein (homo sapiens))",
"c-reactive protein (homo sapiens)"
] | [
"crp (mus musculus) (c-reactive protein, pentraxin-related (mus musculus))",
"crp (homo sapiens) (cysteine and glycine rich protein 1 (homo sapiens))",
"crp (mus musculus) (cysteine rich protein 2 (mus musculus))",
"crp (rattus norvegicus) (c-reactive protein (rattus norvegicus))",
"crp (arabidopsis thalian... | Given the context 'Genotype frequencies did not differ by sex except for TNF(rs1799724), IL2(rs2069762), IL10(rs1800890), PPARG(rs1801282), and CRP(rs1800947) with differences of less than 4%.', answer the user's query. |
What is the biomedical concept corresponding to 'proteinase-activated receptors'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))",
"coagulation factor ii thrombin receptor (mus musculus)"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"platelet activating factor receptor (homo sapiens)",
"platelet-activating factor receptor (mus musculus)",
"coagulation factor ii thrombin recepto... | Given the context 'Regulatory network of inflammation downstream of proteinase-activated receptors.', answer the user's query. |
What is the biomedical concept corresponding to 'protease-activated receptors'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))",
"coagulation factor ii thrombin receptor (mus musculus)"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"platelet activating factor receptor (homo sapiens)",
"platelet-activating factor receptor (mus musculus)",
"coagulation factor ii thrombin recepto... | Given the context 'BACKGROUND: Protease-activated receptors (PAR) are present in the urinary bladder, and their expression is altered in response to inflammation.', answer the user's query. |
What is the biomedical concept corresponding to 'par'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par (mus musculus)",
"par (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par (drosophila melanogaster) (paralog (drosophila melanogaster))",
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombi... | Given the context 'BACKGROUND: Protease-activated receptors (PAR) are present in the urinary bladder, and their expression is altered in response to inflammation.', answer the user's query. |
What is the biomedical concept corresponding to 'par'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par (mus musculus)",
"par (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par (drosophila melanogaster) (paralog (drosophila melanogaster))",
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombi... | Given the context 'Although the canonical signal transduction pathway downstream of PAR activation and coupling with various G proteins is known and leads to the rapid transcription of genes involved in inflammation, the effect of PAR activation on the downstream transcriptome is unknown.', answer the user's query. |
What is the biomedical concept corresponding to 'par'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par (mus musculus)",
"par (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par (drosophila melanogaster) (paralog (drosophila melanogaster))",
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombi... | Given the context 'Although the canonical signal transduction pathway downstream of PAR activation and coupling with various G proteins is known and leads to the rapid transcription of genes involved in inflammation, the effect of PAR activation on the downstream transcriptome is unknown.', answer the user's query. |
What is the biomedical concept corresponding to 'par'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par (mus musculus)",
"par (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par (drosophila melanogaster) (paralog (drosophila melanogaster))",
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombi... | Given the context 'We have shown that intravesical administration of PAR-activating peptides leads to an inflammatory reaction characterized by edema and granulocyte infiltration.', answer the user's query. |
What is the biomedical concept corresponding to 'par1'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (saccharomyces cerevisiae s288c)",
"par1 (rattus norveg... | Given the context 'Moreover, the inflammatory response to intravesical instillation of known pro-inflammatory stimuli such as E. coli lipopolysaccharide (LPS), substance P (SP), and antigen was strongly attenuated by PAR1- and to a lesser extent by PAR2-deficiency.', answer the user's query. |
What is the biomedical concept corresponding to 'par2'? | [
"par2 (mus musculus) (f2r like trypsin receptor 1 (mus musculus))",
"par-2 (mus musculus)"
] | [
"par2 (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par2 (homo sapiens) (f2r like trypsin receptor 1 (homo sapiens))",
"par2 (rattus norvegicus)",
"par2 (xenopus laevis)",
"par2 (mus musculus) (pulmonary adenoma resistance 2 (mus musculus))"
] | Given the context 'Moreover, the inflammatory response to intravesical instillation of known pro-inflammatory stimuli such as E. coli lipopolysaccharide (LPS), substance P (SP), and antigen was strongly attenuated by PAR1- and to a lesser extent by PAR2-deficiency.', answer the user's query. |
What is the biomedical concept corresponding to 'par1'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (saccharomyces cerevisiae s288c)",
"par1 (rattus norveg... | Given the context 'Here, cDNA array experiments determined inflammatory genes whose expression is dependent on PAR1 activation.', answer the user's query. |
What is the biomedical concept corresponding to 'par1'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (saccharomyces cerevisiae s288c)",
"par1 (rattus norveg... | Given the context 'For this purpose, we compared the alteration in gene expression in wild type and PAR1-/- mice induced by classical pro-inflammatory stimuli (LPS, SP, and antigen).', answer the user's query. |
What is the biomedical concept corresponding to 'par-1'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par-1 (mus musculus)",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par-1 (caenorhabditis elegans)",
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (rattus norvegicus)"
] | Given the context '75 transcripts were considered to be dependent on PAR-1 activation and further annotated in silico by Ingenuity Pathways Analysis (IPA) and gene ontology (GO).', answer the user's query. |
What is the biomedical concept corresponding to 'par1'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (saccharomyces cerevisiae s288c)",
"par1 (rattus norveg... | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'b2m'? | [
"b2m (mus musculus)",
"beta-2 microglobulin (mus musculus)",
"beta2m (mus musculus)"
] | [
"b2m (homo sapiens)",
"b2m (rattus norvegicus)",
"b2mr (homo sapiens)",
"beta-2-microglobulin (homo sapiens)",
"b2m (ovis aries)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'ccl7'? | [
"ccl7 (mus musculus)",
"c-c motif chemokine ligand 7 (mus musculus)"
] | [
"ccl7 (homo sapiens)",
"ccl7 (rattus norvegicus)",
"c-c motif chemokine ligand 7 (homo sapiens)",
"mcp7 (mus musculus)",
"ccl27 (homo sapiens)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'cd200'? | [
"cd200 (mus musculus)",
"cd200 molecule (mus musculus)"
] | [
"cd200 (homo sapiens)",
"cd200 molecule (homo sapiens)",
"cd200 (rattus norvegicus)",
"cd200 molecule (rattus norvegicus)",
"cd200 receptor 1 (homo sapiens)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'cd63'? | [
"cd63 (mus musculus)",
"cd63 antigen (mus musculus)"
] | [
"cd63 (homo sapiens)",
"cd63 molecule (homo sapiens)",
"gp63 (homo sapiens)",
"cd63 (rattus norvegicus)",
"cd63 molecule (rattus norvegicus)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'cfl1'? | [
"cfl1 (mus musculus)"
] | [
"cfl1 (homo sapiens) (cofilin 1 (homo sapiens))",
"cfl1 (rattus norvegicus)",
"cfll1 (homo sapiens)",
"cfl1 (homo sapiens) (vacuolar protein sorting 72 homolog (homo sapiens))",
"cfl1 (cricetulus griseus)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'dusp1'? | [
"dusp1 (mus musculus)"
] | [
"dusp1 (homo sapiens) (dual specificity phosphatase 1 (homo sapiens))",
"dusp1 (homo sapiens) (dual specificity phosphatase 12 (homo sapiens))",
"dusp (homo sapiens)",
"dusp1 (rattus norvegicus)",
"duspp (homo sapiens)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'fkbp1a'? | [
"fkbp1a (mus musculus)",
"fk506 binding protein 1a (mus musculus)",
"fkbp1 (mus musculus)"
] | [
"fkbp1a (homo sapiens)",
"fkbp1a (rattus norvegicus)",
"fkbp-1a (homo sapiens)",
"fkbp prolyl isomerase 1a (homo sapiens)",
"fkbp1 (homo sapiens)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'fth1'? | [
"fth1 (mus musculus)"
] | [
"fth1 (homo sapiens)",
"fth1 (saccharomyces cerevisiae s288c)",
"fth1 (rattus norvegicus)",
"fth (homo sapiens)",
"fth1 (cricetulus griseus)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'hspb1'? | [
"hspb1 (mus musculus)"
] | [
"hspb1 (homo sapiens)",
"hsp70b1 (mus musculus)",
"hspb1 (rattus norvegicus)",
"hsp90b1 (homo sapiens)",
"hsp90b1 (mus musculus)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'marcksl1'? | [
"marcksl1 (mus musculus)",
"marcks-like 1 (mus musculus)"
] | [
"marcksl1 (homo sapiens)",
"marcks like 1 (homo sapiens)",
"marcksl1 (rattus norvegicus)",
"marcksl1 (danio rerio)",
"marcksl1 (xenopus laevis)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'mmp2'? | [
"mmp2 (mus musculus)",
"matrix metallopeptidase 2 (mus musculus)"
] | [
"mmp2 (homo sapiens)",
"mmp2 (rattus norvegicus)",
"matrix metallopeptidase 2 (homo sapiens)",
"mmp2 (xenopus laevis)",
"mmp2 (drosophila melanogaster)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'myo5a'? | [
"myo5a (mus musculus)"
] | [
"myo5a (homo sapiens)",
"myo5a (xenopus laevis)",
"myo5a (rattus norvegicus)",
"myo5a (danio rerio)",
"myo5aa (danio rerio)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'nfkbia'? | [
"nfkbia (mus musculus)",
"nfkbi (mus musculus)",
"nuclear factor of kappa light polypeptide gene enhancer in b cells inhibitor, alpha (mus musculus)"
] | [
"nfkbia (homo sapiens)",
"nfkbia (rattus norvegicus)",
"nfkbi (homo sapiens)",
"nfkb inhibitor alpha (homo sapiens)",
"nfkbika (homo sapiens)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'pax1'? | [
"pax1 (mus musculus)",
"pax-1 (mus musculus)",
"paired box 1 (mus musculus)"
] | [
"pax1 (homo sapiens)",
"pax1 (rattus norvegicus)",
"pax1 (xenopus laevis)",
"pax-1 (rattus norvegicus)",
"pax1 (cricetulus griseus)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'plaur'? | [
"plaur (mus musculus)"
] | [
"plaur (homo sapiens)",
"plaur (rattus norvegicus)",
"plau (homo sapiens)",
"plau (mus musculus)",
"plaur.l (xenopus laevis)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'ppia'? | [
"ppia (mus musculus) (peptidylprolyl isomerase a (mus musculus))",
"peptidylprolyl isomerase a (mus musculus)"
] | [
"ppia (homo sapiens)",
"ppia (rattus norvegicus)",
"peptidylprolyl isomerase a (homo sapiens)",
"ppiase (homo sapiens) (fkbp prolyl isomerase 1a (homo sapiens))",
"ppia (ovis aries)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'ptpn1'? | [
"ptpn1 (mus musculus)",
"protein tyrosine phosphatase, non-receptor type 1 (mus musculus)"
] | [
"ptpn1 (homo sapiens)",
"ptpn1 (rattus norvegicus)",
"ptpn21 (homo sapiens)",
"ptpns1 (homo sapiens)",
"shp1 (homo sapiens) (protein tyrosine phosphatase non-receptor type 6 (homo sapiens))"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'ptprcap'? | [
"ptprcap (mus musculus)",
"protein tyrosine phosphatase receptor type c polypeptide-associated protein (mus musculus)"
] | [
"ptprcap (homo sapiens)",
"protein tyrosine phosphatase receptor type c associated protein (homo sapiens)",
"ptprcap (rattus norvegicus)",
"ptprc (homo sapiens)",
"ptprc (mus musculus)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 's100a10'? | [
"s100a10 (mus musculus)",
"s100 calcium binding protein a10 (calpactin) (mus musculus)"
] | [
"s100a10 (homo sapiens)",
"s100a10 (rattus norvegicus)",
"s100 calcium binding protein a10 (homo sapiens)",
"s100a (homo sapiens)",
"s100a11 (homo sapiens)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'sim2'? | [
"sim2 (mus musculus)"
] | [
"sim2 (homo sapiens)",
"sim2 (saccharomyces cerevisiae s288c)",
"sim bhlh transcription factor 2 (homo sapiens)",
"sim2 (xenopus laevis)",
"sim2 (rattus norvegicus)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'tnfaip2'? | [
"tnfaip2 (mus musculus)"
] | [
"tnfaip2 (homo sapiens)",
"tnfaip2 (rattus norvegicus)",
"tnfaip3 interacting protein 2 (homo sapiens)",
"tnfaip3 (homo sapiens)",
"tnfaip1 (homo sapiens)"
] | Given the context 'Among PAR1-dependent transcripts, the following have been implicated in the inflammatory process: b2m, ccl7, cd200, cd63, cdbpd, cfl1, dusp1, fkbp1a, fth1, hspb1, marcksl1, mmp2, myo5a, nfkbia, pax1, plaur, ppia, ptpn1, ptprcap, s100a10, sim2, and tnfaip2.', answer the user's query. |
What is the biomedical concept corresponding to 'dusp1'? | [
"dusp1 (mus musculus)"
] | [
"dusp1 (homo sapiens) (dual specificity phosphatase 1 (homo sapiens))",
"dusp1 (homo sapiens) (dual specificity phosphatase 12 (homo sapiens))",
"dusp (homo sapiens)",
"dusp1 (rattus norvegicus)",
"duspp (homo sapiens)"
] | Given the context 'In this context, the activation of genes such as dusp1 and nfkbia seems to counter-balance the inflammatory response to PAR activation by limiting prolonged activation of p38 MAPK and increased cytokine production.', answer the user's query. |
What is the biomedical concept corresponding to 'nfkbia'? | [
"nfkbia (mus musculus)",
"nfkbi (mus musculus)",
"nuclear factor of kappa light polypeptide gene enhancer in b cells inhibitor, alpha (mus musculus)"
] | [
"nfkbia (homo sapiens)",
"nfkbia (rattus norvegicus)",
"nfkbi (homo sapiens)",
"nfkb inhibitor alpha (homo sapiens)",
"nfkbika (homo sapiens)"
] | Given the context 'In this context, the activation of genes such as dusp1 and nfkbia seems to counter-balance the inflammatory response to PAR activation by limiting prolonged activation of p38 MAPK and increased cytokine production.', answer the user's query. |
What is the biomedical concept corresponding to 'par'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par (mus musculus)",
"par (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par (drosophila melanogaster) (paralog (drosophila melanogaster))",
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombi... | Given the context 'In this context, the activation of genes such as dusp1 and nfkbia seems to counter-balance the inflammatory response to PAR activation by limiting prolonged activation of p38 MAPK and increased cytokine production.', answer the user's query. |
What is the biomedical concept corresponding to 'p38 mapk'? | [
"p38alpha (mus musculus)",
"p38 (mus musculus) (mitogen-activated protein kinase 14 (mus musculus))",
"p38mapk (mus musculus)",
"p38a (mus musculus)",
"p38-alpha (mus musculus)"
] | [
"p38alpha (homo sapiens)",
"p38 (homo sapiens) (mitogen-activated protein kinase 1 (homo sapiens))",
"p38alpha (rattus norvegicus)",
"p38 (homo sapiens) (mitogen-activated protein kinase 14 (homo sapiens))",
"p38 (rattus norvegicus)"
] | Given the context 'In this context, the activation of genes such as dusp1 and nfkbia seems to counter-balance the inflammatory response to PAR activation by limiting prolonged activation of p38 MAPK and increased cytokine production.', answer the user's query. |
What is the biomedical concept corresponding to 'arf6'? | [
"arf6 (mus musculus)",
"arf gtpase 6 (mus musculus)"
] | [
"arf6 (homo sapiens)",
"arf6 (arabidopsis thaliana)",
"arf gtpase 6 (homo sapiens)",
"arf6 (rattus norvegicus)",
"arf6 (drosophila melanogaster)"
] | Given the context 'In contrast, transcripts such as arf6 and dcnt1 that are involved in the mechanism of PAR re-sensitization would tend to perpetuate the inflammatory reaction in response to common pro-inflammatory stimuli.', answer the user's query. |
What is the biomedical concept corresponding to 'par'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par (mus musculus)",
"par (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par (drosophila melanogaster) (paralog (drosophila melanogaster))",
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombi... | Given the context 'In contrast, transcripts such as arf6 and dcnt1 that are involved in the mechanism of PAR re-sensitization would tend to perpetuate the inflammatory reaction in response to common pro-inflammatory stimuli.', answer the user's query. |
What is the biomedical concept corresponding to 'par1'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (saccharomyces cerevisiae s288c)",
"par1 (rattus norveg... | Given the context 'The combination of cDNA array results and genomic networks reveals an overriding participation of PAR1 in bladder inflammation, provides a working model for the involvement of downstream signaling, and evokes testable hypotheses regarding the transcriptome downstream of PAR1 activation.', answer the ... |
What is the biomedical concept corresponding to 'par1'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (saccharomyces cerevisiae s288c)",
"par1 (rattus norveg... | Given the context 'The combination of cDNA array results and genomic networks reveals an overriding participation of PAR1 in bladder inflammation, provides a working model for the involvement of downstream signaling, and evokes testable hypotheses regarding the transcriptome downstream of PAR1 activation.', answer the ... |
What is the biomedical concept corresponding to 'par1'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (saccharomyces cerevisiae s288c)",
"par1 (rattus norveg... | Given the context 'It remains to be determined whether or not mechanisms targeting PAR1 gene silencing or PAR1 blockade will ameliorate the clinical manifestation of cystitis.', answer the user's query. |
What is the biomedical concept corresponding to 'par1'? | [
"par1 (mus musculus) (coagulation factor ii thrombin receptor (mus musculus))"
] | [
"par1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (homo sapiens) (nuclear receptor subfamily 1 group i member 2 (homo sapiens))",
"par-1 (homo sapiens) (coagulation factor ii thrombin receptor (homo sapiens))",
"par1 (saccharomyces cerevisiae s288c)",
"par1 (rattus norveg... | Given the context 'It remains to be determined whether or not mechanisms targeting PAR1 gene silencing or PAR1 blockade will ameliorate the clinical manifestation of cystitis.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'echinus, required for interommatidial cell sorting and cell death in the Drosophila pupal retina, encodes a protein with homology to ubiquitin-specific proteases.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'In previously described echinus mutants, interommatidial cell sorting, which precedes cell death, occurred relatively normally.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'These results have suggested that echinus functions in the pupal retina primarily to promote interommatidial cell death.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'RESULTS: We generated a number of new echinus alleles, some likely null mutants.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'Analysis of these alleles provides evidence that echinus has roles in cell sorting as well as cell death.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'echinus encodes a protein with homology to ubiquitin-specific proteases.', answer the user's query. |
What is the biomedical concept corresponding to 'ubiquitin'? | [
"ubiquitin (drosophila melanogaster)"
] | [
"ubiquitin (saccharomyces cerevisiae s288c)",
"ubiquitin (caenorhabditis elegans)",
"ubiquitin c (homo sapiens)",
"ubiquitin 1 (mus musculus)",
"ubiquitin (xenopus laevis)"
] | Given the context 'These proteins cleave ubiquitin-conjugated proteins at the ubiquitin C-terminus.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'The echinus locus encodes multiple splice forms, including two proteins that lack residues thought to be critical for deubiquitination activity.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'Surprisingly, ubiquitous expression in the eye of versions of Echinus that lack residues critical for ubiquitin specific protease activity, as well as a version predicted to be functional, rescue the echinus loss-of-function phenotype.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'Surprisingly, ubiquitous expression in the eye of versions of Echinus that lack residues critical for ubiquitin specific protease activity, as well as a version predicted to be functional, rescue the echinus loss-of-function phenotype.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'Finally, genetic interactions were not detected between echinus loss and gain-of-function and a number of known apoptotic regulators.', answer the user's query. |
What is the biomedical concept corresponding to 'notch'? | [
"notch (drosophila melanogaster)"
] | [
"notch1 (homo sapiens)",
"notch1 (mus musculus)",
"notch 1 (mus musculus)",
"notch receptor 1 (homo sapiens)",
"notch2 (homo sapiens)"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'dronc'? | [
"dronc (drosophila melanogaster)",
"nc\\dronc (drosophila melanogaster)"
] | [
"droc (drosophila melanogaster)",
"droc (mus musculus)",
"drongo (drosophila melanogaster)",
"droninac (drosophila melanogaster)",
"cnc_drome (drosophila melanogaster)"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'drice'? | [
"drice (drosophila melanogaster)",
"death related ice-like caspase (drosophila melanogaster)"
] | [
"flice (homo sapiens)",
"flice (mus musculus)",
"fadd (homo sapiens)",
"ser/thr-rich caspase (drosophila melanogaster)",
"ice (homo sapiens) (caspase 1 (homo sapiens))"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'dcp-1'? | [
"dcp-1 (drosophila melanogaster) (death caspase-1 (drosophila melanogaster))",
"dcp1 (drosophila melanogaster) (death caspase-1 (drosophila melanogaster))"
] | [
"dcp-1 (mus musculus)",
"dcp1 (mus musculus)",
"dcp-1 (drosophila melanogaster) (decapping protein 1 (drosophila melanogaster))",
"dcp1 (arabidopsis thaliana)",
"dcp1 (drosophila melanogaster) (decapping protein 1 (drosophila melanogaster))"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'dream'? | [
"dream (drosophila melanogaster)",
"dream/strica (drosophila melanogaster)",
"strica/dream/dream (drosophila melanogaster)"
] | [
"dream (homo sapiens)",
"dream (mus musculus)",
"dream (rattus norvegicus)",
"dram (homo sapiens)",
"dram (mus musculus)"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'rpr'? | [
"rpr (drosophila melanogaster) (reaper (drosophila melanogaster))",
"rp (drosophila melanogaster) (reaper (drosophila melanogaster))"
] | [
"rpr (homo sapiens)",
"rpr1 (saccharomyces cerevisiae s288c)",
"rpr1 (arabidopsis thaliana)",
"rpr1 (mus musculus)",
"rpr (drosophila melanogaster) (ribonuclease p rna (drosophila melanogaster))"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'hid'? | [
"hid (drosophila melanogaster)",
"hid1 (drosophila melanogaster)"
] | [
"hid (homo sapiens)",
"hid (mus musculus)",
"hid1 (mus musculus)",
"hid1 (homo sapiens)",
"hid-1 (caenorhabditis elegans)"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'grim'? | [
"grim (drosophila melanogaster)",
"grm (drosophila melanogaster)"
] | [
"grim-1 (homo sapiens)",
"grim-1 (mus musculus)",
"grm (mus musculus)",
"grm1 (homo sapiens)",
"grm1 (mus musculus)"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'diap1'? | [
"diap1 (drosophila melanogaster) (death-associated inhibitor of apoptosis 1 (drosophila melanogaster))",
"diap 1 (drosophila melanogaster)",
"diap-1 (drosophila melanogaster)",
"diap (drosophila melanogaster) (death-associated inhibitor of apoptosis 1 (drosophila melanogaster))",
"diap1/thread (drosophila m... | [
"diap1 (mus musculus)",
"diap1 (drosophila melanogaster) (death-associated inhibitor of apoptosis 2 (drosophila melanogaster))",
"diap1 (rattus norvegicus)",
"dia1 (mus musculus) (diaphanous related formin 1 (mus musculus))"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'lozenge'? | [
"lozenge (drosophila melanogaster)"
] | [
"enhancer of lozenge (drosophila melanogaster)",
"lozengelike (drosophila melanogaster)",
"suppressor of lozenge (drosophila melanogaster)",
"loquacious (drosophila melanogaster)",
"loei (drosophila melanogaster)"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'klumpfuss'? | [
"klumpfuss (drosophila melanogaster)"
] | [
"kluh (arabidopsis thaliana)",
"klu (arabidopsis thaliana)",
"kinesin-8 family plus-end directed microtubule motor klp5 (schizosaccharomyces pombe)",
"pfkl (homo sapiens)",
"kls (homo sapiens)"
] | Given the context 'These include Notch, EGFR, the caspases Dronc, Drice, Dcp-1, Dream, the caspase activators, Rpr, Hid, and Grim, the caspase inhibitor DIAP1, and Lozenge or Klumpfuss.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'The echinus locus encodes multiple splice forms of a protein with homology to ubiquitin-specific proteases, but protease activity is unlikely to be required for echinus function, at least when echinus is overexpressed.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'The echinus locus encodes multiple splice forms of a protein with homology to ubiquitin-specific proteases, but protease activity is unlikely to be required for echinus function, at least when echinus is overexpressed.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'The echinus locus encodes multiple splice forms of a protein with homology to ubiquitin-specific proteases, but protease activity is unlikely to be required for echinus function, at least when echinus is overexpressed.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'Characterization of likely echinus null alleles and genetic interactions suggests that echinus acts at a novel point(s) to regulate interommatidial cell sorting and/or cell death in the fly eye.', answer the user's query. |
What is the biomedical concept corresponding to 'echinus'? | [
"echinus (drosophila melanogaster)"
] | [
"echinoid (drosophila melanogaster)",
"itch (cricetulus griseus)",
"atrichosis (mus musculus)",
"echinus-like (drosophila melanogaster)",
"kel (cricetulus griseus)"
] | Given the context 'Characterization of likely echinus null alleles and genetic interactions suggests that echinus acts at a novel point(s) to regulate interommatidial cell sorting and/or cell death in the fly eye.', answer the user's query. |
What is the biomedical concept corresponding to 'hmo1'? | [
"hmo1 (saccharomyces cerevisiae s288c)",
"hmo1p (saccharomyces cerevisiae s288c)"
] | [
"mho1 (saccharomyces cerevisiae s288c)",
"hmo1 (schizosaccharomyces pombe)",
"mto1 (homo sapiens)",
"fmo1 (homo sapiens)",
"hmox1 (homo sapiens)"
] | Given the context 'Saccharomyces cerevisiae HMO1 interacts with TFIID and participates in start site selection by RNA polymerase II.', answer the user's query. |
What is the biomedical concept corresponding to 'hmo1'? | [
"hmo1 (saccharomyces cerevisiae s288c)",
"hmo1p (saccharomyces cerevisiae s288c)"
] | [
"mho1 (saccharomyces cerevisiae s288c)",
"hmo1 (schizosaccharomyces pombe)",
"mto1 (homo sapiens)",
"fmo1 (homo sapiens)",
"hmox1 (homo sapiens)"
] | Given the context 'Saccharomyces cerevisiae HMO1, a high mobility group B (HMGB) protein, associates with the rRNA locus and with the promoters of many ribosomal protein genes (RPGs).', answer the user's query. |
What is the biomedical concept corresponding to 'sos'? | [
"sos1 (homo sapiens)",
"sos ras/rac guanine nucleotide exchange factor 1 (homo sapiens)"
] | [
"sos (homo sapiens)",
"sos (drosophila melanogaster)",
"sos1 (mus musculus)",
"sos1 (saccharomyces cerevisiae s288c)",
"sos ras/rac guanine nucleotide exchange factor 1 (mus musculus)"
] | Given the context 'Here, the Sos recruitment system was used to show that HMO1 interacts with TBP and the N-terminal domain (TAND) of TAF1, which are integral components of TFIID.', answer the user's query. |
What is the biomedical concept corresponding to 'hmo1'? | [
"hmo1 (saccharomyces cerevisiae s288c)",
"hmo1p (saccharomyces cerevisiae s288c)"
] | [
"mho1 (saccharomyces cerevisiae s288c)",
"hmo1 (schizosaccharomyces pombe)",
"mto1 (homo sapiens)",
"fmo1 (homo sapiens)",
"hmox1 (homo sapiens)"
] | Given the context 'Here, the Sos recruitment system was used to show that HMO1 interacts with TBP and the N-terminal domain (TAND) of TAF1, which are integral components of TFIID.', answer the user's query. |
What is the biomedical concept corresponding to 'tbp'? | [
"tata-binding protein (saccharomyces cerevisiae s288c)"
] | [
"tbp (homo sapiens)",
"tbp (mus musculus)",
"tbp (drosophila melanogaster)",
"tbpii (homo sapiens)",
"tata-box binding protein (homo sapiens)"
] | Given the context 'Here, the Sos recruitment system was used to show that HMO1 interacts with TBP and the N-terminal domain (TAND) of TAF1, which are integral components of TFIID.', answer the user's query. |
What is the biomedical concept corresponding to 'taf1'? | [
"taf1 (saccharomyces cerevisiae s288c) (histone acetyltransferase (saccharomyces cerevisiae s288c))"
] | [
"taf1 (homo sapiens)",
"taf1a (homo sapiens)",
"taf1 (mus musculus)",
"tafa1 (homo sapiens)",
"taf1a (mus musculus)"
] | Given the context 'Here, the Sos recruitment system was used to show that HMO1 interacts with TBP and the N-terminal domain (TAND) of TAF1, which are integral components of TFIID.', answer the user's query. |
What is the biomedical concept corresponding to 'hmo1'? | [
"hmo1 (saccharomyces cerevisiae s288c)",
"hmo1p (saccharomyces cerevisiae s288c)"
] | [
"mho1 (saccharomyces cerevisiae s288c)",
"hmo1 (schizosaccharomyces pombe)",
"mto1 (homo sapiens)",
"fmo1 (homo sapiens)",
"hmox1 (homo sapiens)"
] | Given the context 'Biochemical studies revealed that HMO1 copurifies with TFIID and directly interacts with TBP but not with TAND.', answer the user's query. |
What is the biomedical concept corresponding to 'tbp'? | [
"tata-binding protein (saccharomyces cerevisiae s288c)"
] | [
"tbp (homo sapiens)",
"tbp (mus musculus)",
"tbp (drosophila melanogaster)",
"tbpii (homo sapiens)",
"tata-box binding protein (homo sapiens)"
] | Given the context 'Biochemical studies revealed that HMO1 copurifies with TFIID and directly interacts with TBP but not with TAND.', answer the user's query. |
What is the biomedical concept corresponding to 'hmo1'? | [
"hmo1 (saccharomyces cerevisiae s288c)",
"hmo1p (saccharomyces cerevisiae s288c)"
] | [
"mho1 (saccharomyces cerevisiae s288c)",
"hmo1 (schizosaccharomyces pombe)",
"mto1 (homo sapiens)",
"fmo1 (homo sapiens)",
"hmox1 (homo sapiens)"
] | Given the context 'Deletion of HMO1 (Deltahmo1) causes a severe cold-sensitive growth defect and decreases transcription of some TAND-dependent genes.', answer the user's query. |
What is the biomedical concept corresponding to 'hmo1'? | [
"hmo1 (saccharomyces cerevisiae s288c)",
"hmo1p (saccharomyces cerevisiae s288c)"
] | [
"mho1 (saccharomyces cerevisiae s288c)",
"hmo1 (schizosaccharomyces pombe)",
"mto1 (homo sapiens)",
"fmo1 (homo sapiens)",
"hmox1 (homo sapiens)"
] | Given the context 'Deletion of HMO1 (Deltahmo1) causes a severe cold-sensitive growth defect and decreases transcription of some TAND-dependent genes.', answer the user's query. |
What is the biomedical concept corresponding to 'hmo1'? | [
"hmo1 (saccharomyces cerevisiae s288c)",
"hmo1p (saccharomyces cerevisiae s288c)"
] | [
"mho1 (saccharomyces cerevisiae s288c)",
"hmo1 (schizosaccharomyces pombe)",
"mto1 (homo sapiens)",
"fmo1 (homo sapiens)",
"hmox1 (homo sapiens)"
] | Given the context 'Deltahmo1 also affects TFIID occupancy at some RPG promoters in a promoter-specific manner.', answer the user's query. |
What is the biomedical concept corresponding to 'hmo1'? | [
"hmo1 (saccharomyces cerevisiae s288c)",
"hmo1p (saccharomyces cerevisiae s288c)"
] | [
"mho1 (saccharomyces cerevisiae s288c)",
"hmo1 (schizosaccharomyces pombe)",
"mto1 (homo sapiens)",
"fmo1 (homo sapiens)",
"hmox1 (homo sapiens)"
] | Given the context 'Interestingly, over-expression of HMO1 delays colony formation of taf1 mutants lacking TAND (taf1DeltaTAND), but not of the wild-type strain, indicating a functional link between HMO1 and TAND.', answer the user's query. |
What is the biomedical concept corresponding to 'taf1'? | [
"taf1 (saccharomyces cerevisiae s288c) (histone acetyltransferase (saccharomyces cerevisiae s288c))"
] | [
"taf1 (homo sapiens)",
"taf1a (homo sapiens)",
"taf1 (mus musculus)",
"tafa1 (homo sapiens)",
"taf1a (mus musculus)"
] | Given the context 'Interestingly, over-expression of HMO1 delays colony formation of taf1 mutants lacking TAND (taf1DeltaTAND), but not of the wild-type strain, indicating a functional link between HMO1 and TAND.', answer the user's query. |
What is the biomedical concept corresponding to 'hmo1'? | [
"hmo1 (saccharomyces cerevisiae s288c)",
"hmo1p (saccharomyces cerevisiae s288c)"
] | [
"mho1 (saccharomyces cerevisiae s288c)",
"hmo1 (schizosaccharomyces pombe)",
"mto1 (homo sapiens)",
"fmo1 (homo sapiens)",
"hmox1 (homo sapiens)"
] | Given the context 'Interestingly, over-expression of HMO1 delays colony formation of taf1 mutants lacking TAND (taf1DeltaTAND), but not of the wild-type strain, indicating a functional link between HMO1 and TAND.', answer the user's query. |
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