filename stringlengths 17 38 ⌀ | gt_das stringlengths 41 7.52k ⌀ | genshare_das stringlengths 10 46.3k ⌀ | md_content stringlengths 0 359k | healing_error stringclasses 4
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10.1371_journal.pcbi.1011775.pdf | Data Availability Statement: The software
“ImportRisk-v1.0.0” to compute the import risk is
available under the Zenodo repository https://doi.
org/10.5281/zenodo.7852476. | The software 'ImportRisk-v1.0.0' to compute the import risk is available under the Zenodo repository https://doi. org/10.5281/zenodo.7852476 . | RESEARCH ARTICLE
Inferring country-specific import risk of
diseases from the world air transportation
network
Pascal P. KlamserID
Clara Jongen1,2, Frank Schlosser1,2, Dirk BrockmannID
1,2, Adrian ZachariaeID
1,2, Benjamin F. MaierID
1,2,7*
1,2,3,4, Olga Baranov5,6,
a1111111111
a1111111111
a1111111111
a1111111111... | null |
10.1167_jov.23.6.7.pdf | The configurations and codes for
this experiment are available in: Github
github.com/Znasif/ColorCalibration, Google
Colab colab.research.google.com/drive/
1eHDXJPRn3HaeAqcdGbOKHVJSiNBXBCMv. | null | Journal of Vision (2023) 23(6):7, 1–20
1
Calibration of head mounted displays for vision research with
virtual reality
Nasif Zaman
Prithul Sarker
Alireza Tavakkoli
Department of Computer Science and Engineering,
University of Nevada, Reno, NV, USA
Department of Computer Science and Engineering,
University of Nev... | null |
10.1371_journal.pmed.1003998.pdf | null | Data will be available to successful applications for clearly specified research projects following /our-research/other-research- policy/data-sharing/ Discussion with the trial team is encouraged to determine whether the relevant data to support the application are available. . | RESEARCH ARTICLE
Radiotherapy to the prostate for men with
metastatic prostate cancer in the UK and
Switzerland: Long-term results from the
STAMPEDE randomised controlled trial
2, Noel W. Clarke3,4,
2, Silke GillessenID
1, Christopher D. BrawleyID
9,10, Alex Hoyle3,4, Rob J. JonesID
7, David P. Dearnaley1, Hassan... | Could not heal snippet |
10.7554_elife.86784.pdf | Data availability
Cryo- EM maps and atomic coordinates for the GC- C- Hsp90- Cdc37 complex have been deposited
in the EMDB (EMD- 29523) and PDB (8FX4). Material availability: The plasmids used in this study are
uploaded in (Supplementary file 1). | Data availability Cryo-EM maps and atomic coordinates for the GC-C-Hsp90-Cdc37 complex have been deposited in the EMDB (EMD-29523) and PDB (8FX4). Material availability: The plasmids used in this study are uploaded in (Supplementary file 1). The following datasets were generated: | RESEARCH ARTICLE
Structural insight into guanylyl cyclase
receptor hijacking of the kinase–Hsp90
regulatory mechanism
Nathanael A Caveney1*, Naotaka Tsutsumi1,2†, K Christopher Garcia1,2*
1Departments of Molecular and Cellular Physiology, and Structural Biology, Stanford
University School of Medicine, Stanford, Unite... | null |
10.1038_s41467-022-32646-w.pdf | Data availability
The data that support the findings in this study are available from the
corresponding authors upon reasonable request. Source data are
provided with this paper.
Code availability
All code to reproduce the main simulation results can be found on
GitHub (https://github.com/babaf/motor-adaptation-local-v... | Data availability The data that support the findings in this study are available from the corresponding authors upon reasonable request. Source data are provided with this paper. Code availability All code to reproduce the main simulation results can be found on GitHub ( https://github.com/babaf/motor-adaptation-local-... | nature communications
Article
https://doi.org/10.1038/s41467-022-32646-w
Small, correlated changes in synaptic
connectivity may facilitate rapid
motor learning
Received: 28 October 2021
Accepted: 8 August 2022
Barbara Feulner
Lee E. Miller4,5,6, Juan A. Gallego 1,7 & Claudia Clopath 1,7
1, Matthew G. Perich 2, R... | null |
10.1371_journal.pone.0219089.pdf | Data Availability Statement: All relevant data are
within the paper and its Supporting Information
files. | All relevant data are within the paper and its Supporting Information files. | RESEARCH ARTICLE
Vibration of symmetrically layered angle-ply
cylindrical shells filled with fluid
Nurul Izyan Mat Daud1,2, K. K. ViswanathanID
1,3*
1 UTM Centre for Industrial and Applied Mathematics, Ibnu Sina Institute for Scientific & Industrial Research,
Universiti Teknologi Malaysia, Johor Bahru, Johor, Malay... | null |
10.1242/dmm.041962 | null | null | © 2020. Published by The Company of Biologists Ltd | Disease Models & Mechanisms (2020) 13, dmm041962. doi:10.1242/dmm.041962
RESEARCH ARTICLE
Cell-specific and athero-protective roles for RIPK3 in a murine
model of atherosclerosis
Sarah Colijn1,2,*, Vijay Muthukumar1,‡, Jun Xie1, Siqi Gao1,2 and Courtney T. Griffin1... | null |
10.1093_pnasnexus_pgad113.pdf | Data availability
The processed experimental files for all single-cell data sets used
in this study are available on Zenodo at https://doi.org/10.5281/
zenodo.7474099; Table 1 lists the Gene Expression Omnibus
(GEO) accession numbers for each data set. The saved model
weights for DELAY are available on ... | Data availability The processed experimental files for all single-cell data sets used in this study are available on Zenodo at https://doi.org/10.5281/ zenodo.7474099 ; Table 1 lists the Gene Expression Omnibus (GEO) accession numbers for each data set. The saved model weights for DELAY are available on Zenodo at https... | PNAS Nexus, 2023, 2, 1–13
https://doi.org/10.1093/pnasnexus/pgad113
Advance access publication 30 March 2023
Research Report
Depicting pseudotime-lagged causality across single-cell
trajectories for accurate gene-regulatory inference
Caleb C. Reagor
a,b,c,*, Nicolas Velez-Angel
a and A. J. Hudspeth
a
aHoward Hug... | null |
10.1371_journal.pone.0294847.pdf | Data Availability Statement: All relevant data are
within the paper and its Supporting information
files. | Data Availability Statement: All relevant data are within the paper and its Supporting information files. Funding: The ATL1102 in DMD clinical trial was funded in its entirety by the sponsor Antisense Therapeutics Ltd. Authors Ms Desem and Dr Tachas are employees of the sponsor and so received payment for services from... | RESEARCH ARTICLE
A phase 2 open-label study of the safety and
efficacy of weekly dosing of ATL1102 in
patients with non-ambulatory Duchenne
muscular dystrophy and pharmacology in
mdx mice
1,2,3*, George Tachas4, Nuket Desem4, Peter J. Houweling2,3,
Ian R. WoodcockID
Michael Kean5, Jaiman Emmanuel5, Rachel KennedyID
... | null |
10.1107_s2052252522010612.pdf | null | null | research papers
IUCrJ
ISSN 2052-2525
CRYOjEM
Received 17 June 2022
Accepted 3 November 2022
Edited by L. A. Passmore, MRC Laboratory of
Molecular Biology, United Kingdom
Keywords: cryoEM; automated cryoEM data
collection; computer vision; microscope
automation software; machine learning; deep
learning; automation;... | null |
10.1371_journal.pone.0243922.pdf | Data Availability Statement: All relevant data are
within the paper and its Supporting Information
files. | All relevant data are within the paper and its Supporting Information files. | RESEARCH ARTICLE
The prevalence of esophageal cancer after
caustic and pesticide ingestion: A nationwide
cohort study
Han-Wei MuID
Dong-Zong HungID
1*
1,2, Chun-Hung Chen1,2, Kai-Wei Yang1,2, Chi-Syuan Pan1,2, Cheng-Li Lin3,
1 Division of Toxicology, China Medical University Hospital, Taichung, Taiwan, 2 Departmen... | null |
10.1103_physrevresearch.5.013168.pdf | null | null | PHYSICAL REVIEW RESEARCH 5, 013168 (2023)
Surrogate light curve models for kilonovae with comprehensive wind ejecta outflows
and parameter estimation for AT2017gfo
Atul Kedia ,1 Marko Ristic ,1 Richard O’Shaughnessy ,1 Anjali B. Yelikar
,1 Ryan T. Wollaeger
,2,3 Oleg Korobkin ,2,4
Eve A. Chase ,2,5 Christopher L. F... | null |
10.1017_jfm.2023.90.pdf | Data availability statement. The codes used in this study are openly available in GitHub at https://github.
com/Maplenormandy/qg-edgeofchaos. | Data availability statement. The codes used in this study are openly available in GitHub at https://github. com/Maplenormandy/qg-edgeofchaos . | J. Fluid Mech. (2023), vol. 958, A28, doi:10.1017/jfm.2023.90
Rossby waves past the breaking point in zonally
dominated turbulence
Norman M. Cao†
Courant Institute of Mathematical Sciences, New York University, New York, NY 10012, USA
(Received 10 August 2022; revised 21 January 2023; accepted 25 January 2023)
The... | null |
10.1371_journal.ppat.1011346.pdf | Data Availability Statement: All relevant data are
within the manuscript and its Supporting
Information files. | All relevant data are within the manuscript and its Supporting Information files. | RESEARCH ARTICLE
A modified Agrobacterium-mediated
transformation for two oomycete pathogens
Luyao Wang1,2, Fei Zhao2, Haohao Liu2, Han Chen2, Fan Zhang2, Suhua Li1, Tongjun Sun1,
Vladimir NekrasovID
3, Sanwen Huang1*, Suomeng DongID
2*
a1111111111
a1111111111
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a1111111111
OPEN ACCESS
Cita... | null |
10.1371_journal.pone.0269555.pdf | Data Availability Statement: All relevant data are
within the paper and its Supporting Information
files. | All relevant data are within the paper and its Supporting Information files. | RESEARCH ARTICLE
Grapevine trunk diseases of cold-hardy
varieties grown in Northern Midwest
vineyards coincide with canker fungi and
winter injury
David H. DeKreyID
1
1*, Annie E. Klodd2, Matthew D. Clark3, Robert A. BlanchetteID
1 Department of Plant Pathology, University of Minnesota, St. Paul, Minnesota, United ... | null |
10.1038/s41467-022-29297-2 | Data availability
The microbial growth data generated in this study are provided in the Supplementary
Table S2.
Code availability
The model code is deposited on GitHub (https://github.com/LevineLab/POMmodel) and
citable using https://doi.org/10.5281/zenodo.6015020. | Data availability The microbial growth data generated in this study are provided in the Supplementary Table S2 . Code availability The model code is deposited on GitHub ( https://github.com/LevineLab/POMmodel ) and citable using https://doi.org/10.5281/zenodo.6015020 . | ARTICLE
https://doi.org/10.1038/s41467-022-29297-2
OPEN
Microbes contribute to setting the ocean carbon
flux by altering the fate of sinking particulates
Trang T. H. Nguyen
Kapil Amarnath
Otto X. Cordero
3, Uria Alcolombri
2 & Naomi M. Levine
1✉
1, Emily J. Zakem1, Ali Ebrahimi
2, Julia Schwartzman
2, Tolga Cag... | null |
10.1073_pnas.1913292117.pdf | Data Availability Statement. All data discussed in the paper are available
to readers through Harvard Dataverse, https://doi.org/10.7910/DVN/RFGT4S. | Data Availability Statement. All data discussed in the paper are available to readers through Harvard Dataverse, https://doi.org/10.7910/DVN/RFGT4S . | B cells migrate into remote brain areas and support
neurogenesis and functional recovery after focal
stroke in mice
Sterling B. Ortegaa,b,c,1, Vanessa O. Torresb,c,1, Sarah E. Latchneyd,e, Cody W. Whooleryd, Ibrahim Z. Noorbhaib,c,
Katie Poinsatteb,c, Uma M. Selvarajb,c, Monica A. Bensonb,c, Anouk J. M. Meeuwissenb,c,... | null |
10.1371_journal.pntd.0010231.pdf | Data Availability Statement: De-identified data is
available online via the COR-NTD Research
Dataverse: https://dataverse.unc.edu/dataset.
xhtml?persistentId=doi:10.15139/S3/WOYRUW. | De-identified data is available online via the COR-NTD Research Dataverse: https://dataverse.unc.edu/dataset. xhtml?persistentId=doi:10.15139/S3/WOYRUW . | RESEARCH ARTICLE
Positive-case follow up for lymphatic filariasis
after a transmission assessment survey in Haiti
1☯*, Alain JavelID
Marisa A. HastID
1, Tara A. BrantID
Keri RobinsonID
Aurèle Telfort5, Christine Dubray1
2☯, Eurica Denis2, Kira BarbreID
1, Ryan WiegandID
1, Katherine GassID
3, Jonas RigodonID
3, Ma... | null |
10.1371_journal.pmed.1002934.pdf | Data Availability Statement: A minimal dataset
and STATA DO file are included as Supporting
information files to enable readers to replicate our
analysis. | A minimal dataset and STATA DO file are included as Supporting information files to enable readers to replicate our analysis. | RESEARCH ARTICLE
Mortality and recovery following moderate
and severe acute malnutrition in children
aged 6–18 months in rural Jharkhand and
Odisha, eastern India: A cohort study
1,2*, Nirmala Nair2, Andrew Copas1, Hemanta Pradhan2, Naomi SavilleID
1,
Audrey ProstID
Prasanta Tripathy2, Rajkumar Gope2, Shibanand Rath... | null |
10.1088_1361-6552_ad001a.pdf | Data availability statement
The data cannot be made publicly available upon
publication due to legal restrictions preventing
unrestricted public distribution. The data that sup-
port the findings of this study are available upon
reasonable request from the authors. | Data availability statement The data cannot be made publicly available upon publication due to legal restrictions preventing unrestricted public distribution. The data that support the findings of this study are available upon reasonable request from the authors. | P A P E R
iopscience.org/ped
Phys. Educ. 59 (2024) 015001 (12pp)
Einsteinian gravitational
concepts throughout
secondary school
∗
Corey McInerney
and Phil Sutton
University of Lincoln, School of Mathematics and Physics, Lincoln LN6 7TS, United
Kingdom
E-mail: cmcinerney@lincoln.ac.uk
Abstract
Einstein’s theo... | null |
10.1371_journal.pone.0296688.pdf | Data Availability Statement: All data files are
available from the OpenBU database (https://hdl.
handle.net/2144/45321). | All data files are available from the OpenBU database ( https://hdl. handle.net/2144/45321 ). | RESEARCH ARTICLE
Flanged males have higher reproductive
success in a completely wild orangutan
population
Amy M. ScottID
Wahyu Susanto6, Tatang Mitra Setia6, Cheryl D. Knott1,7
1,2*, Graham L. Banes3,4, Wuryantari Setiadi5, Jessica R. Saragih5, Tri
1 Department of Anthropology, Boston University, Boston, Massachuse... | null |
10.1103_physrevd.107.023530.pdf | null | null | Editors' Suggestion
Featured in Physics
PHYSICAL REVIEW D 107, 023530 (2023)
Joint analysis of Dark Energy Survey Year 3 data and CMB lensing
from SPT and Planck. II. Cross-correlation measurements
and cosmological constraints
C. Chang ,1,2 Y. Omori,1,2,3,4 E. J. Baxter,5 C. Doux,6 A. Choi,7 S. Pandey,6 A. Alarcon,... | null |
10.1371_journal.pcbi.1007117.pdf | Data Availability Statement: All relevant data are
within the manuscript and its Supporting
Information files. | All relevant data are within the manuscript and its Supporting Information files. | RESEARCH ARTICLE
Development of a physiologically-based
pharmacokinetic pediatric brain model for
prediction of cerebrospinal fluid drug
concentrations and the influence of
meningitis
Laurens F. M. VerscheijdenID
M. RusselID
1*
1, Jan B. Koenderink1, Saskia N. de WildtID
1,2, Frans G.
1 Department of Pharmacology... | null |
10.1088_1402-4896_ad16b7.pdf | Data availability statement
The data that support the findings of this study are available upon reasonable request from the authors. | Data availability statement The data that support the findings of this study are available upon reasonable request from the authors. | RECEIVED
15 July 2023
REVISED
11 December 2023
ACCEPTED FOR PUBLICATION
18 December 2023
PUBLISHED
29 December 2023
Phys. Scr. 99 (2024) 015246
https://doi.org/10.1088/1402-4896/ad16b7
PAPER
Global and multistable dynamics in calcium oscillations model
Rajes Kannan Subramanian1, Zeric Tabekoueng Njitacke2,∗
Kart... | null |
10.1016_j.isci.2021.102204.pdf | Data and code availability
The data that support the findings of this study and sequences were submitted to the NCBI sequence read
archive (SRA) under BioProject ID: PRJNA633714. Code for analysis is available on github repository:
https://github.com/galud27. | Data and code availability The data that support the findings of this study and sequences were submitted to the NCBI sequence read archive (SRA) under BioProject ID: PRJNA633714. Code for analysis is available on github repository: https://github.com/galud27 . | UC San Diego
UC San Diego Previously Published Works
Title
Sensitivity of the mangrove-estuarine microbial community to aquaculture effluent
Permalink
https://escholarship.org/uc/item/3229890c
Journal
iScience, 24(3)
ISSN
2589-0042
Authors
Erazo, Natalia G
Bowman, Jeff S
Publication Date
2021-03-01
DOI
1... | null |
10.1371_journal.pone.0253387.pdf | Data Availability Statement: Raw genome
sequencing data for 23 strains are available from
the NCBI with BioProject PRJNA683613. | Raw genome sequencing data for 23 strains are available from the NCBI with BioProject PRJNA683613. | RESEARCH ARTICLE
Classification of cannabis strains in the
Canadian market with discriminant analysis of
principal components using genome-wide
single nucleotide polymorphisms
Dan Jin1,2, Philippe HenryID
3,4, Jacqueline Shan2, Jie ChenID
1,5*
a1111111111
a1111111111
a1111111111
a1111111111
a1111111111
OPEN ACCES... | null |
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