Brightfield Single Cell Embeddings
Collection
A suite of four single-cell brightfield image datasets with three reference embeddings for benchmarking embedding quality. • 5 items • Updated
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cell_id string | run_id string | expected_class string | hfm sequence | imagenet sequence | cp sequence | __index_level_0__ int64 |
|---|---|---|---|---|---|---|
1700251239061_106_0_00 | IR231117200031165 | A375 | [
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1700251239106_106_12_00 | IR231117200031165 | A375 | [
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1700251239115_106_13_01 | IR231117200031165 | A375 | [
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1700251239128_106_18_01 | IR231117200031165 | A375 | [
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1700251239150_106_22_00 | IR231117200031165 | A375 | [
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4275088... | 4 |
1700251239181_106_29_00 | IR231117200031165 | A375 | [
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1700251239181_106_29_01 | IR231117200031165 | A375 | [
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90580... | 6 |
1700251239504_106_39_00 | IR231117200031165 | A375 | [0.07185526937246323,-0.0028121434152126312,0.07334034889936447,-0.05038704723119736,-0.040516763925(...TRUNCATED) | [0.0006074339617043734,0.0009721490205265582,0.0011935492511838675,0.0021334851626306772,0.001629838(...TRUNCATED) | [36000.0,10435.0,13080.0,186.0,179.0,66.0,70.0,125.24159080019166,126.86027791087686,10435.0,1.61435(...TRUNCATED) | 7 |
1700251239529_106_42_01 | IR231117200031165 | A375 | [0.014079545624554157,0.1461588740348816,-0.035804107785224915,-0.12163596600294113,0.04243663325905(...TRUNCATED) | [0.0006700781523250043,0.0015193222789093852,0.0015400280244648457,0.002366641303524375,0.0020119627(...TRUNCATED) | [36001.0,2721.0,3780.0,162.0,161.0,99.0,101.0,129.19992649761116,131.22454979786843,2721.0,2.3007373(...TRUNCATED) | 8 |
1700251239564_106_45_00 | IR231117200031165 | A375 | [0.1045055091381073,0.011768395081162453,0.059969231486320496,-0.09638608992099762,0.008028166368603(...TRUNCATED) | [0.0005773574230261147,0.0009675454348325729,0.0012920581502839923,0.002137932926416397,0.0016449760(...TRUNCATED) | [2.0,10020.0,13209.0,178.0,183.0,67.0,64.0,123.88522954091816,121.6244510978044,10020.0,5.1386450650(...TRUNCATED) | 9 |
End of preview.
deepcell/brightfield-cancer-cells Short description: This dataset contains 24 000 unstained brightfield images of four human cancer cell lines, acquired on the Deepcell REM-I instrument. It is designed for the “Discriminating Ability” benchmark in our brightfield single-cell embeddings suite.
Description: This dataset contains 24 000 unstained brightfield images of four human cancer cell lines, acquired on the Deepcell REM-I instrument. It is designed for the “Discriminating Ability” benchmark in our brightfield single-cell embeddings suite.
- Cell lines: A375, CAOV3, Jurkat, MNT-1
- Images: 24 000 total (4 lines × 3 runs × 2 000 images) for training; 8 000 held-out test images (4 lines × 1 run × 2 000 images)
- Image format: 16-bit PNG, 256 × 256 px
- Metadata: run ID, cell line label, sample date, instrument settings
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