Brightfield Single Cell Embeddings
Collection
A suite of four single-cell brightfield image datasets with three reference embeddings for benchmarking embedding quality. • 5 items • Updated
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cell_id string | run_id string | expected_class string | hfm sequence | imagenet sequence | cp sequence | __index_level_0__ int64 |
|---|---|---|---|---|---|---|
1727213554383_912349010008_26_00 | IR240924213224781 | Monocytes | [
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1727213564401_912349010008_161_00 | IR240924213224781 | Monocytes | [
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1727213567405_912349010008_215_01 | IR240924213224781 | Monocytes | [
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1727213568175_912349010008_228_00 | IR240924213224781 | Monocytes | [
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1727213568192_912349010008_295_00 | IR240924213224781 | Monocytes | [
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1727213569573_912349010008_322_00 | IR240924213224781 | Monocytes | [
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1727213569586_912349010008_362_00 | IR240924213224781 | Monocytes | [0.00887090153992176,0.09982486069202423,-0.10213731974363327,-0.12193611264228821,-0.01809764653444(...TRUNCATED) | [0.0007919821073301136,0.0011887805303558707,0.0013367313658818603,0.001995367929339409,0.0016440397(...TRUNCATED) | [12332.0,3881.0,5110.0,165.0,162.0,95.0,89.0,129.5009018294254,124.426694150992,3881.0,-1.5660361896(...TRUNCATED) | 20,007 |
1727213571688_912349010008_459_00 | IR240924213224781 | Monocytes | [0.029293961822986603,0.08306604623794556,-0.07352651655673981,-0.0656406357884407,-0.02398165129125(...TRUNCATED) | [0.000741748430300504,0.0012295222841203213,0.0012426503235474229,0.002009049989283085,0.00157673784(...TRUNCATED) | [21371.0,7069.0,9975.0,169.0,202.0,94.0,69.0,126.61861649455368,130.0420144291979,7069.0,-2.60058641(...TRUNCATED) | 20,008 |
1727213572418_912349010008_479_00 | IR240924213224781 | Monocytes | [0.005710961297154427,0.11590052396059036,0.0025179400108754635,-0.13267524540424347,0.0592884421348(...TRUNCATED) | [0.0008356566540896893,0.0011758399195969105,0.0014155765529721975,0.002060439670458436,0.0020206475(...TRUNCATED) | [30317.0,1849.0,2496.0,152.0,156.0,104.0,104.0,127.93131422390482,128.73336938885885,1849.0,-1.87583(...TRUNCATED) | 20,009 |
End of preview.
deepcell/brightfield-immune-cells Short description: This dataset contains 12 000 unstained brightfield images of primary human immune subtypes, acquired on the Deepcell REM-I instrument. It is designed for the “Discriminating Ability” benchmark in our brightfield single-cell embeddings suite.
Description: This dataset contains 12 000 unstained brightfield images of primary human immune subtypes, acquired on the Deepcell REM-I instrument. It is designed for the “Discriminating Ability” benchmark in our brightfield single-cell embeddings suite.
Cell types: T cells, NK cells, Monocytes
Images: 12 000 total (3 subtypes × 2 runs × 2 000 images)
Image format: 16-bit PNG, 256 × 256 px
Metadata: run ID, cell type label, donor ID, imaging conditions
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