Brightfield Single Cell Embeddings
Collection
A suite of four single-cell brightfield image datasets with three reference embeddings for benchmarking embedding quality. • 5 items • Updated
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cluster int64 | number int64 | hfm sequence | imagenet sequence | cp sequence |
|---|---|---|---|---|
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10 | 1 | [
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101 | 1 | [0.03558613732457161,0.0432417094707489,-0.07027976214885712,-0.1282964050769806,-0.0140866963192820(...TRUNCATED) | [0.0006896813283674419,0.0011731191771104932,0.0011161473812535405,0.001988473813980818,0.0015714839(...TRUNCATED) | [5466.0,6960.0,169.0,173.0,89.0,86.0,127.897365532382,129.117087449689,5466.0,-1.3528733688872308e-1(...TRUNCATED) |
102 | 0 | [0.062041860073804855,0.03855982422828674,0.00677277147769928,-0.11554566025733948,-0.02553565427660(...TRUNCATED) | [0.0006775052170269191,0.0009947409853339195,0.001125770853832364,0.001987373223528266,0.00148862041(...TRUNCATED) | [9853.0,12535.0,187.0,184.0,72.0,75.0,128.51628945498834,127.22389120064956,9853.0,2.046363078989088(...TRUNCATED) |
102 | 1 | [0.053561221808195114,0.01606025919318199,0.011255145072937012,-0.10234138369560242,-0.0439318381249(...TRUNCATED) | [0.0006410067435353994,0.0009761875844560564,0.001235407660715282,0.002102217171341181,0.00156251725(...TRUNCATED) | [10250.0,13340.0,190.0,185.0,75.0,69.0,130.0870243902439,128.14029268292683,10250.0,-6.1199045831017(...TRUNCATED) |
End of preview.
deepcell/flow-image-pairs Short description: Pairs of real 3D-flow brightfield captures for the same cells, to quantify rotation invariance.
Description: Image Pairs consists of 2,000 cells imaged in the Deepcell REM-I microfluidic flow system (85 % Jurkat, 10 % CAOV3, 5 % MNT-1). Each pair shares cell identity but differs in 3D orientation and focal effects. This dataset measures embedding robustness under true rotation and imaging variability. Some frames include debris; no manual filtering has been applied to preserve realistic noise.
The ZIP files contain the cell images in PNG format, the Parquet files contain the HFM, ImageNet and CellProfiler embeddings for those images.
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