Brightfield Single Cell Embeddings
Collection
A suite of four single-cell brightfield image datasets with three reference embeddings for benchmarking embedding quality. • 5 items • Updated
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cluster int64 | number int64 | hfm sequence | imagenet sequence | cp sequence |
|---|---|---|---|---|
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... |
0 | 5 | [
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0 | 6 | [
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... |
0 | 7 | [0.0032433923333883286,0.025332948192954063,-0.07422852516174316,-0.14541471004486084,0.023592723533(...TRUNCATED) | [0.0006505050114355981,0.0009923691395670176,0.001356904860585928,0.002347999019548297,0.00148741528(...TRUNCATED) | [7769.0,10201.0,179.0,177.0,78.0,76.0,128.71656583858928,126.5431844510233,7769.0,-1.238049662788398(...TRUNCATED) |
0 | 8 | [-0.005726238712668419,0.013040971010923386,-0.07075490802526474,-0.13026189804077148,0.042551271617(...TRUNCATED) | [0.0006055246340110898,0.00096665951423347,0.0012992775300517678,0.0023411731235682964,0.00145728397(...TRUNCATED) | [7589.0,10752.0,173.0,175.0,77.0,63.0,126.36104888654631,122.53458953748849,7589.0,-6.02540239924565(...TRUNCATED) |
0 | 9 | [-0.004182690754532814,0.006933009251952171,-0.06711810827255249,-0.12128813564777374,0.027191966772(...TRUNCATED) | [0.0006207769038155675,0.000993607216514647,0.0012858471600338817,0.002233116887509823,0.00149726553(...TRUNCATED) | [7182.0,9312.0,175.0,172.0,79.0,75.0,127.79044834307992,123.79754942912838,7182.0,1.1802114840975264(...TRUNCATED) |
End of preview.
deepcell/realistic-synthetic-cells Short description: Photorealistic Jurkat-like images generated by a diffusion model conditioned on morphometric principal components.
Description: Realistic Synthetic Cells (RSC) uses a conditional denoising diffusion model (DDPM) with a U-Net backbone to produce 128×128 grayscale cell images. The model is conditioned on a 30-dimensional vector of decorrelated principal components derived from 54 morphometric features. Training on 120 000 PC–image pairs from diverse cell types ensures biologically plausible variability. Controlled perturbations along individual PCs, with fixed noise seeds, yield synthetic trajectories for smoothness and local linearity benchmarks.
The ZIP files contain the generated images in PNG format, the Parquet files contain the HFM, ImageNet and CellProfiler embeddings for those images.
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