Dataset Preview
The full dataset viewer is not available (click to read why). Only showing a preview of the rows.
The dataset generation failed
Error code: DatasetGenerationError
Exception: TypeError
Message: Couldn't cast array of type
struct<start: int64, end: int64, text: string, concept_id: string, umls_cui: string, context: struct<negated: bool, status: string, uncertain: bool>>
to
{'start': Value('int64'), 'end': Value('int64'), 'text': Value('string'), 'concept_id': Value('string')}
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1827, in _prepare_split_single
for key, table in generator:
^^^^^^^^^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 613, in wrapped
for item in generator(*args, **kwargs):
~~~~~~~~~^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 343, in _generate_tables
self._cast_table(pa_table, json_field_paths=json_field_paths),
~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/packaged_modules/json/json.py", line 132, in _cast_table
pa_table = table_cast(pa_table, self.info.features.arrow_schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2378, in table_cast
return cast_table_to_schema(table, schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2312, in cast_table_to_schema
cast_array_to_feature(
~~~~~~~~~~~~~~~~~~~~~^
table[name] if name in table_column_names else pa.array([None] * len(table), type=schema.field(name).type),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
feature,
^^^^^^^^
)
^
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 1861, in wrapper
return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
~~~~^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2118, in cast_array_to_feature
casted_array_values = _c(array.values, feature.feature)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 1863, in wrapper
return func(array, *args, **kwargs)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2158, in cast_array_to_feature
raise TypeError(f"Couldn't cast array of type\n{_short_str(array.type)}\nto\n{_short_str(feature)}")
TypeError: Couldn't cast array of type
struct<start: int64, end: int64, text: string, concept_id: string, umls_cui: string, context: struct<negated: bool, status: string, uncertain: bool>>
to
{'start': Value('int64'), 'end': Value('int64'), 'text': Value('string'), 'concept_id': Value('string')}
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1694, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1880, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
note_id string | text string | entities list |
|---|---|---|
10043750-DS-6 |
Name: ___ Unit No: ___
Admission Date: ___ Discharge Date: ___
Date of Birth: ___ Sex: F
Service: SURGERY
Allergies:
No Known Allergies / Adverse Drug Reactions
Attending: ___.
Chief Complaint:
R colon cancer
Major Surgical or Invasive Procedure:
Open... | [
{
"start": 180,
"end": 182,
"text": "No",
"concept_id": "UNLINKED"
},
{
"start": 201,
"end": 223,
"text": "Adverse Drug Reactions",
"concept_id": "UNLINKED"
},
{
"start": 261,
"end": 275,
"text": "R colon cancer",
"concept_id": "UNLINKED"
},
{
"start":... |
10371195-DS-9 |
Name: ___ Unit No: ___
Admission Date: ___ Discharge Date: ___
Date of Birth: ___ Sex: M
Service: SURGERY
Allergies:
Patient recorded as having No Known Allergies to Drugs
Attending: ___.
Chief Complaint:
s/p Motorcycle crash
Major Surgical or Invasive P... | [
{
"start": 204,
"end": 216,
"text": "No Known All",
"concept_id": "UNLINKED"
},
{
"start": 273,
"end": 289,
"text": "Motorcycle crash",
"concept_id": "UNLINKED"
},
{
"start": 334,
"end": 361,
"text": "Epidural catheter placement",
"concept_id": "UNLINKED"
},... |
10794068-DS-18 |
Name: ___ Unit No: ___
Admission Date: ___ Discharge Date: ___
Date of Birth: ___ Sex: M
Service: SURGERY
Allergies:
Patient recorded as having No Known Allergies to Drugs
Attending: ___.
Chief Complaint:
___ s/p unwitnessed fall, unresponsive, with mult... | [
{
"start": 279,
"end": 295,
"text": "unwitnessed fall",
"concept_id": "UNLINKED"
},
{
"start": 297,
"end": 309,
"text": "unresponsive",
"concept_id": "UNLINKED"
},
{
"start": 325,
"end": 326,
"text": "L",
"concept_id": "UNLINKED"
},
{
"start": 327,
... |
10839721-DS-9 |
Name: ___ Unit No: ___
Admission Date: ___ Discharge Date: ___
Date of Birth: ___ Sex: F
Service: MEDICINE
Allergies:
Iodine-Iodine Containing / Amitriptyline / Amitiza / ondansetron
/ Levaquin
Attending: ___.
Chief Complaint:
Colitis, Hematochezia
... | [
{
"start": 184,
"end": 208,
"text": "Iodine-Iodine Containing",
"concept_id": "UNLINKED"
},
{
"start": 211,
"end": 224,
"text": "Amitriptyline",
"concept_id": "UNLINKED"
},
{
"start": 252,
"end": 255,
"text": "Lev",
"concept_id": "UNLINKED"
},
{
"start... |
10848570-DS-12 |
Name: ___ Unit No: ___
Admission Date: ___ Discharge Date: ___
Date of Birth: ___ Sex: M
Service: MEDICINE
Allergies:
Patient recorded as having No Known Allergies to Drugs
Attending: ___.
Chief Complaint:
Fall
Major Surgical or Invasive Procedure:
Endo... | [
{
"start": 271,
"end": 275,
"text": "Fall",
"concept_id": "UNLINKED"
},
{
"start": 316,
"end": 339,
"text": "Endotracheal Intubation",
"concept_id": "UNLINKED"
},
{
"start": 340,
"end": 369,
"text": "Central Venous Line Placement",
"concept_id": "UNLINKED"
}... |
10860165-DS-24 |
Name: ___ Unit No: ___
Admission Date: ___ Discharge Date: ___
Date of Birth: ___ Sex: M
Service: SURGERY
Allergies:
No Known Allergies / Adverse Drug Reactions
Attending: ___.
Chief Complaint:
trauma evaluation s/p fall from ladder
Major Surgical or Invas... | [
{
"start": 196,
"end": 218,
"text": "Adverse Drug Reactions",
"concept_id": "UNLINKED"
},
{
"start": 256,
"end": 273,
"text": "trauma evaluation",
"concept_id": "UNLINKED"
},
{
"start": 278,
"end": 282,
"text": "fall",
"concept_id": "UNLINKED"
},
{
"st... |
10912090-DS-33 | " \nName: ___ Unit No: ___\n \nAdmission Date: ___ Discharge Date:(...TRUNCATED) | [{"start":180,"end":196,"text":"Abacavir Sulfate","concept_id":"UNLINKED"},{"start":199,"end":206,"t(...TRUNCATED) |
10960609-DS-16 | " \nName: ___ Unit No: ___\n \nAdmission Date: ___ Discharge Date(...TRUNCATED) | [{"start":185,"end":196,"text":"Penicillins","concept_id":"UNLINKED"},{"start":199,"end":208,"text":(...TRUNCATED) |
10965697-DS-12 | " \nName: ___ Unit No: ___\n \nAdmission Date: ___ Discharge Dat(...TRUNCATED) | [{"start":182,"end":192,"text":"lisinopril","concept_id":"UNLINKED"},{"start":195,"end":208,"text":"(...TRUNCATED) |
11021124-DS-15 | " \nName: ___ Unit No: ___\n \nAdmission Date: ___ Discharge Date: (...TRUNCATED) | [{"start":179,"end":186,"text":"Codeine","concept_id":"UNLINKED"},{"start":224,"end":234,"text":"che(...TRUNCATED) |
End of preview.
No dataset card yet
- Downloads last month
- 54