Datasets:
Denis641
/
AdvTestNegatives

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1
query
stringlengths
5
1.23k
positive
stringlengths
53
15.2k
id_
int64
0
252k
task_name
stringlengths
87
242
negative
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20
553
we recursively run dfs on each vertices in free_vertex
def __dfs ( self , v , index , layers ) : if index == 0 : path = [ v ] while self . _dfs_parent [ v ] != v : path . append ( self . _dfs_parent [ v ] ) v = self . _dfs_parent [ v ] self . _dfs_paths . append ( path ) return True for neighbour in self . _graph [ v ] : # check the neighbours of vertex if neighbour in lay...
300
https://github.com/sofiatolaosebikan/hopcroftkarp/blob/5e6cf4f95702304847307a07d369f8041edff8c9/hopcroftkarp/__init__.py#L84-L109
[ "def", "catalogFactory", "(", "name", ",", "*", "*", "kwargs", ")", ":", "fn", "=", "lambda", "member", ":", "inspect", ".", "isclass", "(", "member", ")", "and", "member", ".", "__module__", "==", "__name__", "catalogs", "=", "odict", "(", "inspect", ...
Symbol decorator .
def method ( self , symbol ) : assert issubclass ( symbol , SymbolBase ) def wrapped ( fn ) : setattr ( symbol , fn . __name__ , fn ) return wrapped
301
https://github.com/tehmaze/parser/blob/ccc69236304b2f00671f14c62433e8830b838101/parser/base.py#L69-L76
[ "def", "on_response", "(", "self", ",", "ch", ",", "method_frame", ",", "props", ",", "body", ")", ":", "LOGGER", ".", "debug", "(", "\"rabbitmq.Requester.on_response\"", ")", "if", "self", ".", "corr_id", "==", "props", ".", "correlation_id", ":", "self", ...
Simple date parsing function
def _simpleparsefun ( date ) : if hasattr ( date , 'year' ) : return date try : date = datetime . datetime . strptime ( date , '%Y-%m-%d' ) except ValueError : date = datetime . datetime . strptime ( date , '%Y-%m-%d %H:%M:%S' ) return date
302
https://github.com/antoniobotelho/py-business-calendar/blob/92365fbddd043e41e33b01f1ddd9dd6a5094c031/business_calendar/business_calendar.py#L63-L71
[ "def", "FindClonedClients", "(", "token", "=", "None", ")", ":", "index", "=", "client_index", ".", "CreateClientIndex", "(", "token", "=", "token", ")", "clients", "=", "index", ".", "LookupClients", "(", "[", "\".\"", "]", ")", "hw_infos", "=", "_GetHWIn...
Connect signal to current model
def _connect ( cls ) : post_save . connect ( notify_items , sender = cls , dispatch_uid = 'knocker_{0}' . format ( cls . __name__ ) )
303
https://github.com/nephila/django-knocker/blob/d25380d43a1f91285f1581dcf9db8510fe87f354/knocker/mixins.py#L31-L38
[ "def", "_do_http", "(", "opts", ",", "profile", "=", "'default'", ")", ":", "ret", "=", "{", "}", "url", "=", "__salt__", "[", "'config.get'", "]", "(", "'modjk:{0}:url'", ".", "format", "(", "profile", ")", ",", "''", ")", "user", "=", "__salt__", "...
Disconnect signal from current model
def _disconnect ( cls ) : post_save . disconnect ( notify_items , sender = cls , dispatch_uid = 'knocker_{0}' . format ( cls . __name__ ) )
304
https://github.com/nephila/django-knocker/blob/d25380d43a1f91285f1581dcf9db8510fe87f354/knocker/mixins.py#L41-L48
[ "def", "run_tornado", "(", "self", ",", "args", ")", ":", "server", "=", "self", "import", "tornado", ".", "ioloop", "import", "tornado", ".", "web", "import", "tornado", ".", "websocket", "ioloop", "=", "tornado", ".", "ioloop", ".", "IOLoop", ".", "cur...
Returns a dictionary with the knock data built from _knocker_data
def as_knock ( self , created = False ) : knock = { } if self . should_knock ( created ) : for field , data in self . _retrieve_data ( None , self . _knocker_data ) : knock [ field ] = data return knock
305
https://github.com/nephila/django-knocker/blob/d25380d43a1f91285f1581dcf9db8510fe87f354/knocker/mixins.py#L97-L105
[ "def", "_allocate_address", "(", "self", ",", "instance", ")", ":", "connection", "=", "self", ".", "_connect", "(", ")", "free_addresses", "=", "[", "ip", "for", "ip", "in", "connection", ".", "get_all_addresses", "(", ")", "if", "not", "ip", ".", "inst...
Send the knock in the associated channels Group
def send_knock ( self , created = False ) : knock = self . as_knock ( created ) if knock : gr = Group ( 'knocker-{0}' . format ( knock [ 'language' ] ) ) gr . send ( { 'text' : json . dumps ( knock ) } )
306
https://github.com/nephila/django-knocker/blob/d25380d43a1f91285f1581dcf9db8510fe87f354/knocker/mixins.py#L107-L114
[ "def", "open", "(", "self", ",", "job", ")", ":", "# Create a working directory for the job", "startingDir", "=", "os", ".", "getcwd", "(", ")", "self", ".", "localTempDir", "=", "makePublicDir", "(", "os", ".", "path", ".", "join", "(", "self", ".", "loca...
Colorize some message with ANSI colors specification
def colorize ( printable , color , style = 'normal' , autoreset = True ) : if not COLORED : # disable color return printable if color not in COLOR_MAP : raise RuntimeError ( 'invalid color set, no {}' . format ( color ) ) return '{color}{printable}{reset}' . format ( printable = printable , color = COLOR_MAP [ color ] ...
307
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/color.py#L45-L63
[ "def", "dict_max", "(", "dic", ")", ":", "aux", "=", "dict", "(", "map", "(", "lambda", "item", ":", "(", "item", "[", "1", "]", ",", "item", "[", "0", "]", ")", ",", "dic", ".", "items", "(", ")", ")", ")", "if", "aux", ".", "keys", "(", ...
Change text color for the linux terminal defaults to green . Set warning = True for red .
def color ( string , status = True , warning = False , bold = True ) : attr = [ ] if status : # green attr . append ( '32' ) if warning : # red attr . append ( '31' ) if bold : attr . append ( '1' ) return '\x1b[%sm%s\x1b[0m' % ( ';' . join ( attr ) , string )
308
https://github.com/FortyNorthSecurity/Hasher/blob/40173c56b36680ab1ddc57a9c13c36b3a1ec51c3/hashes/common/helpers.py#L10-L24
[ "def", "generate_citation_counter", "(", "self", ")", ":", "cite_counter", "=", "dict", "(", ")", "filename", "=", "'%s.aux'", "%", "self", ".", "project_name", "with", "open", "(", "filename", ")", "as", "fobj", ":", "main_aux", "=", "fobj", ".", "read", ...
Patch pymongo s Collection object to add a tail method . While not nessicarily recommended you can use this to inject tail as a method into Collection making it generally accessible .
def _patch ( ) : if not __debug__ : # pragma: no cover import warnings warnings . warn ( "A catgirl has died." , ImportWarning ) from pymongo . collection import Collection Collection . tail = tail
309
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/util/capped.py#L49-L61
[ "def", "remove_experiment", "(", "self", ",", "id", ")", ":", "if", "id", "in", "self", ".", "experiments", ":", "self", ".", "experiments", ".", "pop", "(", "id", ")", "self", ".", "write_file", "(", ")" ]
Execute a find and return the resulting queryset using combined plain and parametric query generation . Additionally performs argument case normalization refer to the _prepare_query method s docstring .
def _prepare_find ( cls , * args , * * kw ) : cls , collection , query , options = cls . _prepare_query ( cls . FIND_MAPPING , cls . FIND_OPTIONS , * args , * * kw ) if 'await' in options : raise TypeError ( "Await is hard-deprecated as reserved keyword in Python 3.7, use wait instead." ) if 'cursor_type' in options an...
310
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/core/trait/queryable.py#L113-L146
[ "def", "bulkRead", "(", "self", ",", "endpoint", ",", "size", ",", "timeout", "=", "100", ")", ":", "return", "self", ".", "dev", ".", "read", "(", "endpoint", ",", "size", ",", "timeout", ")" ]
Reload the entire document from the database or refresh specific named top - level fields .
def reload ( self , * fields , * * kw ) : Doc , collection , query , options = self . _prepare_find ( id = self . id , projection = fields , * * kw ) result = collection . find_one ( query , * * options ) if fields : # Refresh only the requested data. for k in result : # TODO: Better merge algorithm. if k == ~ Doc . id...
311
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/core/trait/queryable.py#L271-L284
[ "def", "render", "(", "self", ")", ":", "if", "not", "self", ".", "available", "(", ")", ":", "return", "\"\"", "mtool", "=", "api", ".", "get_tool", "(", "\"portal_membership\"", ")", "member", "=", "mtool", ".", "getAuthenticatedMember", "(", ")", "rol...
Get values gathered from the previously set hierarchy .
def get ( cls ) : results = { } hierarchy = cls . __hierarchy hierarchy . reverse ( ) for storeMethod in hierarchy : cls . merger . merge ( results , storeMethod . get ( ) ) return results
312
https://github.com/andrasmaroy/pconf/blob/1f930bf4e88bf8b4732fcc95557c66f3608b8821/pconf/pconf.py#L27-L45
[ "def", "sync_readmes", "(", ")", ":", "print", "(", "\"syncing README\"", ")", "with", "open", "(", "\"README.md\"", ",", "'r'", ")", "as", "reader", ":", "file_text", "=", "reader", ".", "read", "(", ")", "with", "open", "(", "\"README\"", ",", "'w'", ...
Set command line arguments as a source
def argv ( cls , name , short_name = None , type = None , help = None ) : cls . __hierarchy . append ( argv . Argv ( name , short_name , type , help ) )
313
https://github.com/andrasmaroy/pconf/blob/1f930bf4e88bf8b4732fcc95557c66f3608b8821/pconf/pconf.py#L72-L83
[ "def", "similarity", "(", "self", ",", "other", ")", ":", "sim", "=", "self", ".", "Similarity", "(", ")", "total", "=", "0.0", "# Calculate similarity ratio for each attribute", "cname", "=", "self", ".", "__class__", ".", "__name__", "for", "aname", ",", "...
Set environment variables as a source .
def env ( cls , separator = None , match = None , whitelist = None , parse_values = None , to_lower = None , convert_underscores = None ) : cls . __hierarchy . append ( env . Env ( separator , match , whitelist , parse_values , to_lower , convert_underscores ) )
314
https://github.com/andrasmaroy/pconf/blob/1f930bf4e88bf8b4732fcc95557c66f3608b8821/pconf/pconf.py#L86-L104
[ "def", "_get_port_speed_price_id", "(", "items", ",", "port_speed", ",", "no_public", ",", "location", ")", ":", "for", "item", "in", "items", ":", "if", "utils", ".", "lookup", "(", "item", ",", "'itemCategory'", ",", "'categoryCode'", ")", "!=", "'port_spe...
Set a file as a source .
def file ( cls , path , encoding = None , parser = None ) : cls . __hierarchy . append ( file . File ( path , encoding , parser ) )
315
https://github.com/andrasmaroy/pconf/blob/1f930bf4e88bf8b4732fcc95557c66f3608b8821/pconf/pconf.py#L107-L122
[ "def", "compare_nouns", "(", "self", ",", "word1", ",", "word2", ")", ":", "return", "self", ".", "_plequal", "(", "word1", ",", "word2", ",", "self", ".", "plural_noun", ")" ]
Generate a MongoDB projection dictionary using the Django ORM style .
def P ( Document , * fields , * * kw ) : __always__ = kw . pop ( '__always__' , set ( ) ) projected = set ( ) omitted = set ( ) for field in fields : if field [ 0 ] in ( '-' , '!' ) : omitted . add ( field [ 1 : ] ) elif field [ 0 ] == '+' : projected . add ( field [ 1 : ] ) else : projected . add ( field ) if not proj...
316
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/param/project.py#L11-L35
[ "def", "get_segment_definer_comments", "(", "xml_file", ",", "include_version", "=", "True", ")", ":", "from", "glue", ".", "ligolw", ".", "ligolw", "import", "LIGOLWContentHandler", "as", "h", "lsctables", ".", "use_in", "(", "h", ")", "# read segment definer tab...
Identify if the given session ID is currently valid . Return True if valid False if explicitly invalid None if unknown .
def is_valid ( self , context , sid ) : record = self . _Document . find_one ( sid , project = ( 'expires' , ) ) if not record : return return not record . _expired
317
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/web/session/mongo.py#L55-L66
[ "def", "_start", "(", "self", ",", "tpart", ")", ":", "g", "=", "gevent", ".", "Greenlet", "(", "self", ".", "uploader", ",", "tpart", ")", "g", ".", "link", "(", "self", ".", "_finish", ")", "# Account for concurrency_burden before starting the greenlet", "...
Immediately expire a session from the backing store .
def invalidate ( self , context , sid ) : result = self . _Document . get_collection ( ) . delete_one ( { '_id' : sid } ) return result . deleted_count == 1
318
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/web/session/mongo.py#L68-L73
[ "def", "get_version", "(", ")", ":", "if", "all", "(", "[", "VERSION", ",", "UPDATED", ",", "any", "(", "[", "isinstance", "(", "UPDATED", ",", "date", ")", ",", "isinstance", "(", "UPDATED", ",", "datetime", ")", ",", "]", ")", ",", "]", ")", ":...
Update or insert the session document into the configured collection
def persist ( self , context ) : D = self . _Document document = context . session [ self . name ] D . get_collection ( ) . replace_one ( D . id == document . id , document , True )
319
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/web/session/mongo.py#L92-L98
[ "def", "product_name", "(", "self", ")", ":", "buf", "=", "(", "ctypes", ".", "c_char", "*", "self", ".", "MAX_BUF_SIZE", ")", "(", ")", "self", ".", "_dll", ".", "JLINKARM_EMU_GetProductName", "(", "buf", ",", "self", ".", "MAX_BUF_SIZE", ")", "return",...
Channels connection setup . Register the current client on the related Group according to the language
def ws_connect ( message ) : prefix , language = message [ 'path' ] . strip ( '/' ) . split ( '/' ) gr = Group ( 'knocker-{0}' . format ( language ) ) gr . add ( message . reply_channel ) message . channel_session [ 'knocker' ] = language message . reply_channel . send ( { "accept" : True } )
320
https://github.com/nephila/django-knocker/blob/d25380d43a1f91285f1581dcf9db8510fe87f354/knocker/consumers.py#L9-L18
[ "def", "extract_paths", "(", "self", ",", "paths", ",", "ignore_nopath", ")", ":", "try", ":", "super", "(", ")", ".", "extract_paths", "(", "paths", "=", "paths", ",", "ignore_nopath", "=", "ignore_nopath", ",", ")", "except", "ExtractPathError", "as", "e...
Channels connection close . Deregister the client
def ws_disconnect ( message ) : language = message . channel_session [ 'knocker' ] gr = Group ( 'knocker-{0}' . format ( language ) ) gr . discard ( message . reply_channel )
321
https://github.com/nephila/django-knocker/blob/d25380d43a1f91285f1581dcf9db8510fe87f354/knocker/consumers.py#L30-L37
[ "def", "put_admin_metadata", "(", "self", ",", "admin_metadata", ")", ":", "logger", ".", "debug", "(", "\"Putting admin metdata\"", ")", "text", "=", "json", ".", "dumps", "(", "admin_metadata", ")", "key", "=", "self", ".", "get_admin_metadata_key", "(", ")"...
Start a new animation instance
def start ( self , autopush = True ) : if self . enabled : if autopush : self . push_message ( self . message ) self . spinner . message = ' - ' . join ( self . animation . messages ) if not self . spinner . running : self . animation . thread = threading . Thread ( target = _spinner , args = ( self . spinner , ) ) sel...
322
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/animation.py#L235-L246
[ "def", "get_connection_ip_list", "(", "as_wmi_format", "=", "False", ",", "server", "=", "_DEFAULT_SERVER", ")", ":", "ret", "=", "dict", "(", ")", "setting", "=", "'IPGrant'", "reg_separator", "=", "r',\\s*'", "if", "as_wmi_format", ":", "ret", "=", "list", ...
Stop the thread animation gracefully and reset_message
def stop ( cls ) : if AnimatedDecorator . _enabled : if cls . spinner . running : cls . spinner . running = False cls . animation . thread . join ( ) if any ( cls . animation . messages ) : cls . pop_message ( ) sys . stdout = sys . __stdout__
323
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/animation.py#L249-L259
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Try guess the message by the args passed
def auto_message ( self , args ) : if any ( args ) and callable ( args [ 0 ] ) and not self . message : return args [ 0 ] . __name__ elif not self . message : return self . default_message else : return self . message
324
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/animation.py#L296-L315
[ "def", "printParameters", "(", "self", ")", ":", "print", "\"------------PY TemporalPooler Parameters ------------------\"", "print", "\"numInputs = \"", ",", "self", ".", "getNumInputs", "(", ")", "print", "\"numColumns = \"", ",", "self", "...
Activate the TypingStream on stdout
def start ( self ) : self . streams . append ( sys . stdout ) sys . stdout = self . stream
325
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/animation.py#L353-L356
[ "def", "merge_objects", "(", "self", ",", "mujoco_objects", ")", ":", "self", ".", "mujoco_objects", "=", "mujoco_objects", "self", ".", "objects", "=", "{", "}", "# xml manifestation", "self", ".", "max_horizontal_radius", "=", "0", "for", "obj_name", ",", "o...
Change back the normal stdout after the end
def stop ( cls ) : if any ( cls . streams ) : sys . stdout = cls . streams . pop ( - 1 ) else : sys . stdout = sys . __stdout__
326
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/animation.py#L359-L364
[ "def", "checkIsConsistent", "(", "self", ")", ":", "if", "is_an_array", "(", "self", ".", "mask", ")", "and", "self", ".", "mask", ".", "shape", "!=", "self", ".", "data", ".", "shape", ":", "raise", "ConsistencyError", "(", "\"Shape mismatch mask={}, data={...
Prolong the working duration of an already held lock . Attempting to prolong a lock not already owned will result in a Locked exception .
def prolong ( self ) : D = self . __class__ collection = self . get_collection ( ) identity = self . Lock ( ) query = D . id == self query &= D . lock . instance == identity . instance query &= D . lock . time >= ( identity . time - identity . __period__ ) previous = collection . find_one_and_update ( query , { '$set' ...
327
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/core/trait/lockable.py#L245-L271
[ "def", "init", "(", "uri", ",", "echo", "=", "False", ")", ":", "global", "ENGINE", ",", "_METADATA", ",", "JOBS_TABLE", ",", "METADATA_TABLE", ",", "LOGS_TABLE", "ENGINE", "=", "sqlalchemy", ".", "create_engine", "(", "uri", ",", "echo", "=", "echo", ",...
Release an exclusive lock on this integration task . Unless forcing if we are not the current owners of the lock a Locked exception will be raised .
def release ( self , force = False ) : D = self . __class__ collection = self . get_collection ( ) identity = self . Lock ( ) query = D . id == self if not force : query &= D . lock . instance == identity . instance previous = collection . find_one_and_update ( query , { '$unset' : { ~ D . lock : True } } , { ~ D . loc...
328
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/core/trait/lockable.py#L273-L299
[ "def", "tablestructure", "(", "tablename", ",", "dataman", "=", "True", ",", "column", "=", "True", ",", "subtable", "=", "False", ",", "sort", "=", "False", ")", ":", "t", "=", "table", "(", "tablename", ",", "ack", "=", "False", ")", "six", ".", ...
Send something for stdout and erased after delay
def write ( self , message , autoerase = True ) : super ( Animation , self ) . write ( message ) self . last_message = message if autoerase : time . sleep ( self . interval ) self . erase ( message )
329
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/stream.py#L82-L88
[ "def", "validate_file_permissions", "(", "config", ")", ":", "files", "=", "config", ".", "get", "(", "'files'", ",", "{", "}", ")", "for", "file_name", ",", "options", "in", "files", ".", "items", "(", ")", ":", "for", "key", "in", "options", ".", "...
Write something on the default stream with a prefixed message
def write ( self , message , flush = False ) : # this need be threadsafe because the concurrent spinning running on # the stderr with self . lock : self . paralell_stream . erase ( ) super ( Clean , self ) . write ( message , flush )
330
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/stream.py#L120-L126
[ "def", "editDirectory", "(", "self", ",", "directoryName", ",", "physicalPath", ",", "description", ")", ":", "url", "=", "self", ".", "_url", "+", "\"/directories/%s/edit\"", "%", "directoryName", "params", "=", "{", "\"f\"", ":", "\"json\"", ",", "\"physical...
A Writting like write method delayed at each char
def write ( self , message , flush = True ) : if isinstance ( message , bytes ) : # pragma: no cover message = message . decode ( 'utf-8' ) for char in message : time . sleep ( self . delay * ( 4 if char == '\n' else 1 ) ) super ( Writting , self ) . write ( char , flush )
331
https://github.com/ryukinix/decorating/blob/df78c3f87800205701704c0bc0fb9b6bb908ba7e/decorating/stream.py#L148-L155
[ "def", "register_component", "(", "self", ",", "path", ")", ":", "component", "=", "foundations", ".", "strings", ".", "get_splitext_basename", "(", "path", ")", "LOGGER", ".", "debug", "(", "\"> Current Component: '{0}'.\"", ".", "format", "(", "component", ")"...
Construct the default projection document .
def _get_default_projection ( cls ) : projected = [ ] # The fields explicitly requested for inclusion. neutral = [ ] # Fields returning neutral (None) status. omitted = False # Have any fields been explicitly omitted? for name , field in cls . __fields__ . items ( ) : if field . project is None : neutral . append ( nam...
332
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/core/trait/collection.py#L203-L226
[ "def", "parseReaderConfig", "(", "self", ",", "confdict", ")", ":", "logger", ".", "debug", "(", "'parseReaderConfig input: %s'", ",", "confdict", ")", "conf", "=", "{", "}", "for", "k", ",", "v", "in", "confdict", ".", "items", "(", ")", ":", "if", "n...
Move marrow . schema fields around to control positional instantiation order .
def adjust_attribute_sequence ( * fields ) : amount = None if fields and isinstance ( fields [ 0 ] , int ) : amount , fields = fields [ 0 ] , fields [ 1 : ] def adjust_inner ( cls ) : for field in fields : if field not in cls . __dict__ : # TODO: Copy the field definition. raise TypeError ( "Can only override sequence ...
333
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/util/__init__.py#L26-L55
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Get a dictionary of file paths and timestamps .
def get_hashes ( path , exclude = None ) : out = { } for f in Path ( path ) . rglob ( '*' ) : if f . is_dir ( ) : # We want to watch files, not directories. continue if exclude and re . match ( exclude , f . as_posix ( ) ) : retox_log . debug ( "excluding '{}'" . format ( f . as_posix ( ) ) ) continue pytime = f . stat...
334
https://github.com/tonybaloney/retox/blob/4635e31001d2ac083423f46766249ac8daca7c9c/retox/__main__.py#L103-L119
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Sends an HTTP request to the API .
def request ( self , method , params = None , query_continue = None , files = None , auth = None , continuation = False ) : normal_params = _normalize_params ( params , query_continue ) if continuation : return self . _continuation ( method , params = normal_params , auth = auth , files = files ) else : return self . _...
335
https://github.com/mediawiki-utilities/python-mwapi/blob/7a653c29207ecd318ae4b369d398aed13f26951d/mwapi/session.py#L136-L171
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Authenticate with the given credentials . If authentication is successful all further requests sent will be signed the authenticated user .
def login ( self , username , password , login_token = None ) : if login_token is None : token_doc = self . post ( action = 'query' , meta = 'tokens' , type = 'login' ) login_token = token_doc [ 'query' ] [ 'tokens' ] [ 'logintoken' ] login_doc = self . post ( action = "clientlogin" , username = username , password = p...
336
https://github.com/mediawiki-utilities/python-mwapi/blob/7a653c29207ecd318ae4b369d398aed13f26951d/mwapi/session.py#L213-L246
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Continues a login that requires an additional step . This is common for when login requires completing a captcha or supplying a two - factor authentication token .
def continue_login ( self , login_token , * * params ) : login_params = { 'action' : "clientlogin" , 'logintoken' : login_token , 'logincontinue' : 1 } login_params . update ( params ) login_doc = self . post ( * * login_params ) if login_doc [ 'clientlogin' ] [ 'status' ] != 'PASS' : raise LoginError . from_doc ( logi...
337
https://github.com/mediawiki-utilities/python-mwapi/blob/7a653c29207ecd318ae4b369d398aed13f26951d/mwapi/session.py#L248-L273
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Makes an API request with the GET method
def get ( self , query_continue = None , auth = None , continuation = False , * * params ) : return self . request ( 'GET' , params = params , auth = auth , query_continue = query_continue , continuation = continuation )
338
https://github.com/mediawiki-utilities/python-mwapi/blob/7a653c29207ecd318ae4b369d398aed13f26951d/mwapi/session.py#L284-L309
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Makes an API request with the POST method
def post ( self , query_continue = None , upload_file = None , auth = None , continuation = False , * * params ) : if upload_file is not None : files = { 'file' : upload_file } else : files = None return self . request ( 'POST' , params = params , auth = auth , query_continue = query_continue , files = files , continua...
339
https://github.com/mediawiki-utilities/python-mwapi/blob/7a653c29207ecd318ae4b369d398aed13f26951d/mwapi/session.py#L311-L342
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Transform this record into an instance of a more specialized subclass .
def promote ( self , cls , update = False , preserve = True ) : if not issubclass ( cls , self . __class__ ) : raise TypeError ( "Must promote to a subclass of " + self . __class__ . __name__ ) return self . _as ( cls , update , preserve )
340
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/core/trait/derived.py#L36-L42
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cutting nodes away from menus
def cut_levels ( nodes , start_level ) : final = [ ] removed = [ ] for node in nodes : if not hasattr ( node , 'level' ) : # remove and ignore nodes that don't have level information remove ( node , removed ) continue if node . attr . get ( 'soft_root' , False ) : # remove and ignore nodes that are behind a node marked...
341
https://github.com/jrief/djangocms-bootstrap/blob/293a7050602d6e9a728acea2fb13893e5ec7992e/cms_bootstrap/templatetags/bootstrap_tags.py#L18-L53
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In the event a value that has technically already expired is loaded swap it for None .
def from_mongo ( cls , data , expired = False , * * kw ) : value = super ( Expires , cls ) . from_mongo ( data , * * kw ) if not expired and value . is_expired : return None return value
342
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/core/trait/expires.py#L36-L44
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Generate a MongoDB sort order list using the Django ORM style .
def S ( Document , * fields ) : result = [ ] for field in fields : if isinstance ( field , tuple ) : # Unpack existing tuple. field , direction = field result . append ( ( field , direction ) ) continue direction = ASCENDING if not field . startswith ( '__' ) : field = field . replace ( '__' , '.' ) if field [ 0 ] == '...
343
https://github.com/marrow/mongo/blob/2066dc73e281b8a46cb5fc965267d6b8e1b18467/marrow/mongo/param/sort.py#L12-L38
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Reads data from CNPJ list and write results to output directory .
def run ( self ) : self . _assure_output_dir ( self . output ) companies = self . read ( ) print '%s CNPJs found' % len ( companies ) pbar = ProgressBar ( widgets = [ Counter ( ) , ' ' , Percentage ( ) , ' ' , Bar ( ) , ' ' , Timer ( ) ] , maxval = len ( companies ) ) . start ( ) resolved = 0 runner = Runner ( companie...
344
https://github.com/vkruoso/receita-tools/blob/fd62a252c76541c9feac6470b9048b31348ffe86/receita/tools/get.py#L25-L48
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Reads data from the CSV file .
def read ( self ) : companies = [ ] with open ( self . file ) as f : reader = unicodecsv . reader ( f ) for line in reader : if len ( line ) >= 1 : cnpj = self . format ( line [ 0 ] ) if self . valid ( cnpj ) : companies . append ( cnpj ) return companies
345
https://github.com/vkruoso/receita-tools/blob/fd62a252c76541c9feac6470b9048b31348ffe86/receita/tools/get.py#L50-L60
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Writes json data to the output directory .
def write ( self , data ) : cnpj , data = data path = os . path . join ( self . output , '%s.json' % cnpj ) with open ( path , 'w' ) as f : json . dump ( data , f , encoding = 'utf-8' )
346
https://github.com/vkruoso/receita-tools/blob/fd62a252c76541c9feac6470b9048b31348ffe86/receita/tools/get.py#L62-L68
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Check if a CNPJ is valid .
def valid ( self , cnpj ) : if len ( cnpj ) != 14 : return False tam = 12 nums = cnpj [ : tam ] digs = cnpj [ tam : ] tot = 0 pos = tam - 7 for i in range ( tam , 0 , - 1 ) : tot = tot + int ( nums [ tam - i ] ) * pos pos = pos - 1 if pos < 2 : pos = 9 res = 0 if tot % 11 < 2 else 11 - ( tot % 11 ) if res != int ( digs...
347
https://github.com/vkruoso/receita-tools/blob/fd62a252c76541c9feac6470b9048b31348ffe86/receita/tools/get.py#L88-L125
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Returns the configuration filepath .
def get_default_config_filename ( ) : global _CONFIG_FN if _CONFIG_FN is not None : return _CONFIG_FN with _CONFIG_FN_LOCK : if _CONFIG_FN is not None : return _CONFIG_FN if 'PEYOTL_CONFIG_FILE' in os . environ : cfn = os . path . abspath ( os . environ [ 'PEYOTL_CONFIG_FILE' ] ) else : cfn = os . path . expanduser ( "...
348
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/utility/get_config.py#L73-L104
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Returns a ConfigParser object and a list of filenames that were parsed to initialize it
def get_raw_default_config_and_read_file_list ( ) : global _CONFIG , _READ_DEFAULT_FILES if _CONFIG is not None : return _CONFIG , _READ_DEFAULT_FILES with _CONFIG_LOCK : if _CONFIG is not None : return _CONFIG , _READ_DEFAULT_FILES try : # noinspection PyCompatibility from ConfigParser import SafeConfigParser except I...
349
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/utility/get_config.py#L107-L124
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Thread - safe accessor for the immutable default ConfigWrapper object
def get_config_object ( ) : global _DEFAULT_CONFIG_WRAPPER if _DEFAULT_CONFIG_WRAPPER is not None : return _DEFAULT_CONFIG_WRAPPER with _DEFAULT_CONFIG_WRAPPER_LOCK : if _DEFAULT_CONFIG_WRAPPER is not None : return _DEFAULT_CONFIG_WRAPPER _DEFAULT_CONFIG_WRAPPER = ConfigWrapper ( ) return _DEFAULT_CONFIG_WRAPPER
350
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/utility/get_config.py#L315-L324
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return the first non - None setting from a series where each element in sec_param_list is a section param pair suitable for a get_config_setting call .
def get_from_config_setting_cascade ( self , sec_param_list , default = None , warn_on_none_level = logging . WARN ) : for section , param in sec_param_list : r = self . get_config_setting ( section , param , default = None , warn_on_none_level = None ) if r is not None : return r section , param = sec_param_list [ - 1...
351
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/utility/get_config.py#L213-L228
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Parse the text in infile and save the results in outfile
def parse ( input_ : Union [ str , FileStream ] , source : str ) -> Optional [ str ] : # Step 1: Tokenize the input stream error_listener = ParseErrorListener ( ) if not isinstance ( input_ , FileStream ) : input_ = InputStream ( input_ ) lexer = jsgLexer ( input_ ) lexer . addErrorListener ( error_listener ) tokens = ...
352
https://github.com/hsolbrig/pyjsg/blob/9b2b8fa8e3b8448abe70b09f804a79f0f31b32b7/pyjsg/parser_impl/generate_python.py#L56-L91
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Executes a request by AsyncHTTPClient asynchronously returning an tornado . HTTPResponse .
def fetch ( self , request , callback = None , raise_error = True , * * kwargs ) : # accepts request as string then convert it to HTTPRequest if isinstance ( request , str ) : request = HTTPRequest ( request , * * kwargs ) try : # The first request calls tornado-client ignoring the # possible exception, in case of 401 ...
353
https://github.com/globocom/tornado-alf/blob/3c3ec58c33f2d4ddfbed4ac18ca89d6beedf9c87/tornadoalf/client.py#L29-L66
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Call jsonschema validation to raise JSONValidation on non - compliance or silently pass .
def validate_config ( key : str , config : dict ) -> None : try : jsonschema . validate ( config , CONFIG_JSON_SCHEMA [ key ] ) except jsonschema . ValidationError as x_validation : raise JSONValidation ( 'JSON validation error on {} configuration: {}' . format ( key , x_validation . message ) ) except jsonschema . Sch...
354
https://github.com/PSPC-SPAC-buyandsell/von_agent/blob/0b1c17cca3bd178b6e6974af84dbac1dfce5cf45/von_agent/validate_config.py#L86-L99
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Generate an identifier for a callable signal receiver .
def __make_id ( receiver ) : if __is_bound_method ( receiver ) : return ( id ( receiver . __func__ ) , id ( receiver . __self__ ) ) return id ( receiver )
355
https://github.com/CybOXProject/mixbox/blob/9097dae7a433f5b98c18171c4a5598f69a7d30af/mixbox/signals.py#L41-L56
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Remove all dead signal receivers from the global receivers collection .
def __purge ( ) : global __receivers newreceivers = collections . defaultdict ( list ) for signal , receivers in six . iteritems ( __receivers ) : alive = [ x for x in receivers if not __is_dead ( x ) ] newreceivers [ signal ] = alive __receivers = newreceivers
356
https://github.com/CybOXProject/mixbox/blob/9097dae7a433f5b98c18171c4a5598f69a7d30af/mixbox/signals.py#L59-L72
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Return all signal handlers that are currently still alive for the input signal .
def __live_receivers ( signal ) : with __lock : __purge ( ) receivers = [ funcref ( ) for funcref in __receivers [ signal ] ] return receivers
357
https://github.com/CybOXProject/mixbox/blob/9097dae7a433f5b98c18171c4a5598f69a7d30af/mixbox/signals.py#L75-L89
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Return True if the method is a bound method ( attached to an class instance .
def __is_bound_method ( method ) : if not ( hasattr ( method , "__func__" ) and hasattr ( method , "__self__" ) ) : return False # Bound methods have a __self__ attribute pointing to the owner instance return six . get_method_self ( method ) is not None
358
https://github.com/CybOXProject/mixbox/blob/9097dae7a433f5b98c18171c4a5598f69a7d30af/mixbox/signals.py#L92-L103
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Disconnect the receiver func from the signal identified by signal_id .
def disconnect ( signal , receiver ) : inputkey = __make_id ( receiver ) with __lock : __purge ( ) receivers = __receivers . get ( signal ) for idx in six . moves . range ( len ( receivers ) ) : connected = receivers [ idx ] ( ) if inputkey != __make_id ( connected ) : continue del receivers [ idx ] return True # recei...
359
https://github.com/CybOXProject/mixbox/blob/9097dae7a433f5b98c18171c4a5598f69a7d30af/mixbox/signals.py#L149-L175
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Emit a signal by serially calling each registered signal receiver for the signal .
def emit ( signal , * args , * * kwargs ) : if signal not in __receivers : return receivers = __live_receivers ( signal ) for func in receivers : func ( * args , * * kwargs )
360
https://github.com/CybOXProject/mixbox/blob/9097dae7a433f5b98c18171c4a5598f69a7d30af/mixbox/signals.py#L194-L214
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Very fast uniqify routine for numpy arrays .
def arrayuniqify ( X , retainorder = False ) : s = X . argsort ( ) X = X [ s ] D = np . append ( [ True ] , X [ 1 : ] != X [ : - 1 ] ) if retainorder : DD = np . append ( D . nonzero ( ) [ 0 ] , len ( X ) ) ind = [ min ( s [ x : DD [ i + 1 ] ] ) for ( i , x ) in enumerate ( DD [ : - 1 ] ) ] ind . sort ( ) return ind el...
361
https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/fast.py#L19-L75
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Indices of elements in a sorted numpy array equal to those in another .
def equalspairs ( X , Y ) : T = Y . copy ( ) R = ( T [ 1 : ] != T [ : - 1 ] ) . nonzero ( ) [ 0 ] R = np . append ( R , np . array ( [ len ( T ) - 1 ] ) ) M = R [ R . searchsorted ( range ( len ( T ) ) ) ] D = T . searchsorted ( X ) T = np . append ( T , np . array ( [ 0 ] ) ) M = np . append ( M , np . array ( [ 0 ] )...
362
https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/fast.py#L142-L191
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Indices of elements in a numpy array that appear in another .
def isin ( X , Y ) : if len ( Y ) > 0 : T = Y . copy ( ) T . sort ( ) D = T . searchsorted ( X ) T = np . append ( T , np . array ( [ 0 ] ) ) W = ( T [ D ] == X ) if isinstance ( W , bool ) : return np . zeros ( ( len ( X ) , ) , bool ) else : return ( T [ D ] == X ) else : return np . zeros ( ( len ( X ) , ) , bool )
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https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/fast.py#L260-L304
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Elements of a numpy array that do not appear in another .
def arraydifference ( X , Y ) : if len ( Y ) > 0 : Z = isin ( X , Y ) return X [ np . invert ( Z ) ] else : return X
364
https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/fast.py#L357-L391
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Fast vectorized max function for element - wise comparison of two numpy arrays .
def arraymax ( X , Y ) : Z = np . zeros ( ( len ( X ) , ) , int ) A = X <= Y B = Y < X Z [ A ] = Y [ A ] Z [ B ] = X [ B ] return Z
365
https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/fast.py#L434-L469
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Derive DID as per indy - sdk from seed .
async def _seed2did ( self ) -> str : rv = None dids_with_meta = json . loads ( await did . list_my_dids_with_meta ( self . handle ) ) # list if dids_with_meta : for did_with_meta in dids_with_meta : # dict if 'metadata' in did_with_meta : try : meta = json . loads ( did_with_meta [ 'metadata' ] ) if isinstance ( meta ...
366
https://github.com/PSPC-SPAC-buyandsell/von_agent/blob/0b1c17cca3bd178b6e6974af84dbac1dfce5cf45/von_agent/wallet.py#L181-L211
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Remove serialized wallet if it exists .
async def remove ( self ) -> None : LOGGER . debug ( 'Wallet.remove >>>' ) try : LOGGER . info ( 'Removing wallet: %s' , self . name ) await wallet . delete_wallet ( json . dumps ( self . cfg ) , json . dumps ( self . access_creds ) ) except IndyError as x_indy : LOGGER . info ( 'Abstaining from wallet removal; indy-sd...
367
https://github.com/PSPC-SPAC-buyandsell/von_agent/blob/0b1c17cca3bd178b6e6974af84dbac1dfce5cf45/von_agent/wallet.py#L353-L366
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Load a delimited text file to a numpy record array .
def loadSV ( fname , shape = None , titles = None , aligned = False , byteorder = None , renamer = None , * * kwargs ) : [ columns , metadata ] = loadSVcols ( fname , * * kwargs ) if 'names' in metadata . keys ( ) : names = metadata [ 'names' ] else : names = None if 'formats' in metadata . keys ( ) : formats = metadat...
368
https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/io.py#L39-L152
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Load a separated value text file to a list of lists of strings of records .
def loadSVrecs ( fname , uselines = None , skiprows = 0 , linefixer = None , delimiter_regex = None , verbosity = DEFAULT_VERBOSITY , * * metadata ) : if delimiter_regex and isinstance ( delimiter_regex , types . StringType ) : import re delimiter_regex = re . compile ( delimiter_regex ) [ metadata , inferedlines , WHO...
369
https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/io.py#L401-L572
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Parse the types from a structured numpy dtype object .
def parsetypes ( dtype ) : return [ dtype [ i ] . name . strip ( '1234567890' ) . rstrip ( 'ing' ) for i in range ( len ( dtype ) ) ]
370
https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/io.py#L1808-L1835
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Threshold a coloring dictionary for a given list of column names .
def thresholdcoloring ( coloring , names ) : for key in coloring . keys ( ) : if len ( [ k for k in coloring [ key ] if k in names ] ) == 0 : coloring . pop ( key ) else : coloring [ key ] = utils . uniqify ( [ k for k in coloring [ key ] if k in names ] ) return coloring
371
https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/io.py#L1838-L1873
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Strong directory maker .
def makedir ( dir_name ) : if os . path . exists ( dir_name ) : delete ( dir_name ) os . mkdir ( dir_name )
372
https://github.com/yamins81/tabular/blob/1caf091c8c395960a9ad7078f95158b533cc52dd/tabular/io.py#L1924-L1945
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Decorator to pass community .
def pass_community ( f ) : @ wraps ( f ) def inner ( community_id , * args , * * kwargs ) : c = Community . get ( community_id ) if c is None : abort ( 404 ) return f ( c , * args , * * kwargs ) return inner
373
https://github.com/inveniosoftware/invenio-communities/blob/5c4de6783724d276ae1b6dd13a399a9e22fadc7a/invenio_communities/views/ui.py#L56-L64
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Decorator to require permission .
def permission_required ( action ) : def decorator ( f ) : @ wraps ( f ) def inner ( community , * args , * * kwargs ) : permission = current_permission_factory ( community , action = action ) if not permission . can ( ) : abort ( 403 ) return f ( community , * args , * * kwargs ) return inner return decorator
374
https://github.com/inveniosoftware/invenio-communities/blob/5c4de6783724d276ae1b6dd13a399a9e22fadc7a/invenio_communities/views/ui.py#L67-L77
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Render a template to a string with the provided item in context .
def format_item ( item , template , name = 'item' ) : ctx = { name : item } return render_template_to_string ( template , * * ctx )
375
https://github.com/inveniosoftware/invenio-communities/blob/5c4de6783724d276ae1b6dd13a399a9e22fadc7a/invenio_communities/views/ui.py#L81-L84
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Create a new community .
def new ( ) : form = CommunityForm ( formdata = request . values ) ctx = mycommunities_ctx ( ) ctx . update ( { 'form' : form , 'is_new' : True , 'community' : None , } ) if form . validate_on_submit ( ) : data = copy . deepcopy ( form . data ) community_id = data . pop ( 'identifier' ) del data [ 'logo' ] community = ...
376
https://github.com/inveniosoftware/invenio-communities/blob/5c4de6783724d276ae1b6dd13a399a9e22fadc7a/invenio_communities/views/ui.py#L171-L209
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Create or edit a community .
def edit ( community ) : form = EditCommunityForm ( formdata = request . values , obj = community ) deleteform = DeleteCommunityForm ( ) ctx = mycommunities_ctx ( ) ctx . update ( { 'form' : form , 'is_new' : False , 'community' : community , 'deleteform' : deleteform , } ) if form . validate_on_submit ( ) : for field ...
377
https://github.com/inveniosoftware/invenio-communities/blob/5c4de6783724d276ae1b6dd13a399a9e22fadc7a/invenio_communities/views/ui.py#L216-L247
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Delete a community .
def delete ( community ) : deleteform = DeleteCommunityForm ( formdata = request . values ) ctx = mycommunities_ctx ( ) ctx . update ( { 'deleteform' : deleteform , 'is_new' : False , 'community' : community , } ) if deleteform . validate_on_submit ( ) : community . delete ( ) db . session . commit ( ) flash ( "Communi...
378
https://github.com/inveniosoftware/invenio-communities/blob/5c4de6783724d276ae1b6dd13a399a9e22fadc7a/invenio_communities/views/ui.py#L254-L271
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Uses a peyotl wrapper around an Open Tree web service to get a list of trees including values value for a given property to be searched on porperty .
def ot_find_tree ( arg_dict , exact = True , verbose = False , oti_wrapper = None ) : if oti_wrapper is None : from peyotl . sugar import oti oti_wrapper = oti return oti_wrapper . find_trees ( arg_dict , exact = exact , verbose = verbose , wrap_response = True )
379
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/tutorials/ot-oti-find-tree.py#L12-L24
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Determine whether etype is a List or other iterable
def is_iterable ( etype ) -> bool : return type ( etype ) is GenericMeta and issubclass ( etype . __extra__ , Iterable )
380
https://github.com/hsolbrig/pyjsg/blob/9b2b8fa8e3b8448abe70b09f804a79f0f31b32b7/pyjsg/jsglib/typing_patch_36.py#L29-L31
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This function sets up a command - line option parser and then calls fetch_and_write_mrca to do all of the real work .
def main ( argv ) : import argparse description = 'Uses Open Tree of Life web services to the MRCA for a set of OTT IDs.' parser = argparse . ArgumentParser ( prog = 'ot-tree-of-life-mrca' , description = description ) parser . add_argument ( 'ottid' , nargs = '*' , type = int , help = 'OTT IDs' ) parser . add_argument...
381
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/tutorials/ot-tree-of-life-mrca.py#L63-L82
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Send schema to ledger then retrieve it as written to the ledger and return it . If schema already exists on ledger log error and return schema .
async def send_schema ( self , schema_data_json : str ) -> str : LOGGER . debug ( 'Origin.send_schema >>> schema_data_json: %s' , schema_data_json ) schema_data = json . loads ( schema_data_json ) s_key = schema_key ( schema_id ( self . did , schema_data [ 'name' ] , schema_data [ 'version' ] ) ) with SCHEMA_CACHE . lo...
382
https://github.com/PSPC-SPAC-buyandsell/von_agent/blob/0b1c17cca3bd178b6e6974af84dbac1dfce5cf45/von_agent/agent/origin.py#L36-L82
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Assumes that the caller has the _index_lock !
def _locked_refresh_doc_ids ( self ) : d = { } for s in self . _shards : for k in s . doc_index . keys ( ) : if k in d : raise KeyError ( 'doc "{i}" found in multiple repos' . format ( i = k ) ) d [ k ] = s self . _doc2shard_map = d
383
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/git_storage/type_aware_doc_store.py#L157-L166
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This will push the master branch to the remote named remote_name using the mirroring strategy to cut down on locking of the working repo .
def push_doc_to_remote ( self , remote_name , doc_id = None ) : if doc_id is None : ret = True # @TODO should spawn a thread of each shard... for shard in self . _shards : if not shard . push_to_remote ( remote_name ) : ret = False return ret shard = self . get_shard ( doc_id ) return shard . push_to_remote ( remote_na...
384
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/git_storage/type_aware_doc_store.py#L214-L229
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Generator that iterates over all detected documents . and returns the filesystem path to each doc . Order is by shard but arbitrary within shards .
def iter_doc_filepaths ( self , * * kwargs ) : for shard in self . _shards : for doc_id , blob in shard . iter_doc_filepaths ( * * kwargs ) : yield doc_id , blob
385
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/git_storage/type_aware_doc_store.py#L323-L331
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Form data .
def data ( self ) : d = super ( CommunityForm , self ) . data d . pop ( 'csrf_token' , None ) return d
386
https://github.com/inveniosoftware/invenio-communities/blob/5c4de6783724d276ae1b6dd13a399a9e22fadc7a/invenio_communities/forms.py#L54-L58
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Validate field identifier .
def validate_identifier ( self , field ) : if field . data : field . data = field . data . lower ( ) if Community . get ( field . data , with_deleted = True ) : raise validators . ValidationError ( _ ( 'The identifier already exists. ' 'Please choose a different one.' ) )
387
https://github.com/inveniosoftware/invenio-communities/blob/5c4de6783724d276ae1b6dd13a399a9e22fadc7a/invenio_communities/forms.py#L154-L161
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Returns the text content of filepath
def read_filepath ( filepath , encoding = 'utf-8' ) : with codecs . open ( filepath , 'r' , encoding = encoding ) as fo : return fo . read ( )
388
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/utility/input_output.py#L25-L28
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Returns the text fetched via http GET from URL read as encoding
def download ( url , encoding = 'utf-8' ) : import requests response = requests . get ( url ) response . encoding = encoding return response . text
389
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/utility/input_output.py#L53-L58
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shows JSON indented representation of d
def pretty_dict_str ( d , indent = 2 ) : b = StringIO ( ) write_pretty_dict_str ( b , d , indent = indent ) return b . getvalue ( )
390
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/utility/input_output.py#L80-L84
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writes JSON indented representation of obj to out
def write_pretty_dict_str ( out , obj , indent = 2 ) : json . dump ( obj , out , indent = indent , sort_keys = True , separators = ( ',' , ': ' ) , ensure_ascii = False , encoding = "utf-8" )
391
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/utility/input_output.py#L87-L95
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Create a community response serializer .
def community_responsify ( schema_class , mimetype ) : def view ( data , code = 200 , headers = None , links_item_factory = None , page = None , urlkwargs = None , links_pagination_factory = None ) : """Generate the response object.""" if isinstance ( data , Community ) : last_modified = data . updated response_data = ...
392
https://github.com/inveniosoftware/invenio-communities/blob/5c4de6783724d276ae1b6dd13a399a9e22fadc7a/invenio_communities/serializers/response.py#L58-L94
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Wraps another Exception in an InternalError .
def from_error ( exc_info , json_encoder , debug_url = None ) : exc = exc_info [ 1 ] data = exc . __dict__ . copy ( ) for key , value in data . items ( ) : try : json_encoder . encode ( value ) except TypeError : data [ key ] = repr ( value ) data [ "traceback" ] = "" . join ( traceback . format_exception ( * exc_info ...
393
https://github.com/palantir/typedjsonrpc/blob/274218fcd236ff9643506caa629029c9ba25a0fb/typedjsonrpc/errors.py#L99-L122
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Return whether the cache contains a schema for the input key sequence number or schema identifier .
def contains ( self , index : Union [ SchemaKey , int , str ] ) -> bool : LOGGER . debug ( 'SchemaCache.contains >>> index: %s' , index ) rv = None if isinstance ( index , SchemaKey ) : rv = ( index in self . _schema_key2schema ) elif isinstance ( index , int ) or ( isinstance ( index , str ) and ':2:' not in index ) :...
394
https://github.com/PSPC-SPAC-buyandsell/von_agent/blob/0b1c17cca3bd178b6e6974af84dbac1dfce5cf45/von_agent/cache.py#L115-L136
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Cull cache entry frame list to size favouring most recent query time .
def cull ( self , delta : bool ) -> None : LOGGER . debug ( 'RevoCacheEntry.cull >>> delta: %s' , delta ) rr_frames = self . rr_delta_frames if delta else self . rr_state_frames mark = 4096 ** 0.5 # max rev reg size = 4096; heuristic: hover max around sqrt(4096) = 64 if len ( rr_frames ) > int ( mark * 1.25 ) : rr_fram...
395
https://github.com/PSPC-SPAC-buyandsell/von_agent/blob/0b1c17cca3bd178b6e6974af84dbac1dfce5cf45/von_agent/cache.py#L413-L433
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Return default non - revocation interval from latest to times on delta frames of revocation cache entries on indices stemming from input cred def id .
def dflt_interval ( self , cd_id : str ) -> ( int , int ) : LOGGER . debug ( 'RevocationCache.dflt_interval >>>' ) fro = None to = None for rr_id in self : if cd_id != rev_reg_id2cred_def_id ( rr_id ) : continue entry = self [ rr_id ] if entry . rr_delta_frames : to = max ( entry . rr_delta_frames , key = lambda f : f ...
396
https://github.com/PSPC-SPAC-buyandsell/von_agent/blob/0b1c17cca3bd178b6e6974af84dbac1dfce5cf45/von_agent/cache.py#L662-L706
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Parse and update from archived cache files . Only accept new content ; do not overwrite any existing cache content .
def parse ( base_dir : str , timestamp : int = None ) -> int : LOGGER . debug ( 'parse >>> base_dir: %s, timestamp: %s' , base_dir , timestamp ) if not isdir ( base_dir ) : LOGGER . info ( 'No cache archives available: not feeding cache' ) LOGGER . debug ( 'parse <<< None' ) return None if not timestamp : timestamps = ...
397
https://github.com/PSPC-SPAC-buyandsell/von_agent/blob/0b1c17cca3bd178b6e6974af84dbac1dfce5cf45/von_agent/cache.py#L774-L850
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Returns the nexml2json attribute or the default code for badgerfish
def detect_nexson_version ( blob ) : n = get_nexml_el ( blob ) assert isinstance ( n , dict ) return n . get ( '@nexml2json' , BADGER_FISH_NEXSON_VERSION )
398
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/nexson_syntax/helper.py#L40-L44
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Adds the k - > v mapping to d but if a previous element exists it changes the value of for the key to list .
def _add_value_to_dict_bf ( d , k , v ) : prev = d . get ( k ) if prev is None : d [ k ] = v elif isinstance ( prev , list ) : if isinstance ( v , list ) : prev . extend ( v ) else : prev . append ( v ) else : if isinstance ( v , list ) : x = [ prev ] x . extend ( v ) d [ k ] = x else : d [ k ] = [ prev , v ]
399
https://github.com/OpenTreeOfLife/peyotl/blob/5e4e52a0fdbd17f490aa644ad79fda6ea2eda7c0/peyotl/nexson_syntax/helper.py#L110-L133
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