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ghukill/pyfc4 | pyfc4/models.py | Repository.start_txn | def start_txn(self, txn_name=None):
'''
Request new transaction from repository, init new Transaction,
store in self.txns
Args:
txn_name (str): human name for transaction
Return:
(Transaction): returns intance of newly created transaction
'''
# if no name provided, create one
if not txn_name:
... | python | def start_txn(self, txn_name=None):
'''
Request new transaction from repository, init new Transaction,
store in self.txns
Args:
txn_name (str): human name for transaction
Return:
(Transaction): returns intance of newly created transaction
'''
# if no name provided, create one
if not txn_name:
... | [
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ghukill/pyfc4 | pyfc4/models.py | Repository.get_txn | def get_txn(self, txn_name, txn_uri):
'''
Retrieves known transaction and adds to self.txns.
TODO:
Perhaps this should send a keep-alive request as well? Obviously still needed, and would reset timer.
Args:
txn_prefix (str, rdflib.term.URIRef): uri of the transaction. e.g. http://localhost:8080/rest/t... | python | def get_txn(self, txn_name, txn_uri):
'''
Retrieves known transaction and adds to self.txns.
TODO:
Perhaps this should send a keep-alive request as well? Obviously still needed, and would reset timer.
Args:
txn_prefix (str, rdflib.term.URIRef): uri of the transaction. e.g. http://localhost:8080/rest/t... | [
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ghukill/pyfc4 | pyfc4/models.py | Transaction.keep_alive | def keep_alive(self):
'''
Keep current transaction alive, updates self.expires
Args:
None
Return:
None: sets new self.expires
'''
# keep transaction alive
txn_response = self.api.http_request('POST','%sfcr:tx' % self.root, data=None, headers=None)
# if 204, transaction kept alive
if txn_res... | python | def keep_alive(self):
'''
Keep current transaction alive, updates self.expires
Args:
None
Return:
None: sets new self.expires
'''
# keep transaction alive
txn_response = self.api.http_request('POST','%sfcr:tx' % self.root, data=None, headers=None)
# if 204, transaction kept alive
if txn_res... | [
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ghukill/pyfc4 | pyfc4/models.py | Transaction._close | def _close(self, close_type):
'''
Ends transaction by committing, or rolling back, all changes during transaction.
Args:
close_type (str): expects "commit" or "rollback"
Return:
(bool)
'''
# commit transaction
txn_response = self.api.http_request('POST','%sfcr:tx/fcr:%s' % (self.root, close_type... | python | def _close(self, close_type):
'''
Ends transaction by committing, or rolling back, all changes during transaction.
Args:
close_type (str): expects "commit" or "rollback"
Return:
(bool)
'''
# commit transaction
txn_response = self.api.http_request('POST','%sfcr:tx/fcr:%s' % (self.root, close_type... | [
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ghukill/pyfc4 | pyfc4/models.py | API.http_request | def http_request(self,
verb,
uri,
data=None,
headers=None,
files=None,
response_format=None,
is_rdf = True,
stream = False
):
'''
Primary route for all HTTP requests to repository. Ability to set most parameters for requests library,
with some additional convenience parameters as well.... | python | def http_request(self,
verb,
uri,
data=None,
headers=None,
files=None,
response_format=None,
is_rdf = True,
stream = False
):
'''
Primary route for all HTTP requests to repository. Ability to set most parameters for requests library,
with some additional convenience parameters as well.... | [
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ghukill/pyfc4 | pyfc4/models.py | API.parse_rdf_payload | def parse_rdf_payload(self, data, headers):
'''
small function to parse RDF payloads from various repository endpoints
Args:
data (response.data): data from requests response
headers (response.headers): headers from requests response
Returns:
(rdflib.Graph): parsed graph
'''
# handle edge case ... | python | def parse_rdf_payload(self, data, headers):
'''
small function to parse RDF payloads from various repository endpoints
Args:
data (response.data): data from requests response
headers (response.headers): headers from requests response
Returns:
(rdflib.Graph): parsed graph
'''
# handle edge case ... | [
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ghukill/pyfc4 | pyfc4/models.py | SparqlUpdate._derive_namespaces | def _derive_namespaces(self):
'''
Small method to loop through three graphs in self.diffs, identify unique namespace URIs.
Then, loop through provided dictionary of prefixes and pin one to another.
Args:
None: uses self.prefixes and self.diffs
Returns:
None: sets self.update_namespaces and self.updat... | python | def _derive_namespaces(self):
'''
Small method to loop through three graphs in self.diffs, identify unique namespace URIs.
Then, loop through provided dictionary of prefixes and pin one to another.
Args:
None: uses self.prefixes and self.diffs
Returns:
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ghukill/pyfc4 | pyfc4/models.py | Resource.check_exists | def check_exists(self):
'''
Check if resource exists, update self.exists, returns
Returns:
None: sets self.exists
'''
response = self.repo.api.http_request('HEAD', self.uri)
self.status_code = response.status_code
# resource exists
if self.status_code == 200:
self.exists = True
# resource no ... | python | def check_exists(self):
'''
Check if resource exists, update self.exists, returns
Returns:
None: sets self.exists
'''
response = self.repo.api.http_request('HEAD', self.uri)
self.status_code = response.status_code
# resource exists
if self.status_code == 200:
self.exists = True
# resource no ... | [
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ghukill/pyfc4 | pyfc4/models.py | Resource.create | def create(self, specify_uri=False, ignore_tombstone=False, serialization_format=None, stream=False, auto_refresh=None):
'''
Primary method to create resources.
Args:
specify_uri (bool): If True, uses PUT verb and sets the URI during creation. If False, uses POST and gets repository minted URI
ignore_tom... | python | def create(self, specify_uri=False, ignore_tombstone=False, serialization_format=None, stream=False, auto_refresh=None):
'''
Primary method to create resources.
Args:
specify_uri (bool): If True, uses PUT verb and sets the URI during creation. If False, uses POST and gets repository minted URI
ignore_tom... | [
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ghukill/pyfc4 | pyfc4/models.py | Resource.options | def options(self):
'''
Small method to return headers of an OPTIONS request to self.uri
Args:
None
Return:
(dict) response headers from OPTIONS request
'''
# http request
response = self.repo.api.http_request('OPTIONS', self.uri)
return response.headers | python | def options(self):
'''
Small method to return headers of an OPTIONS request to self.uri
Args:
None
Return:
(dict) response headers from OPTIONS request
'''
# http request
response = self.repo.api.http_request('OPTIONS', self.uri)
return response.headers | [
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Return:
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ghukill/pyfc4 | pyfc4/models.py | Resource.copy | def copy(self, destination):
'''
Method to copy resource to another location
Args:
destination (rdflib.term.URIRef, str): URI location to move resource
Returns:
(Resource) new, moved instance of resource
'''
# set move headers
destination_uri = self.repo.parse_uri(destination)
# http request
... | python | def copy(self, destination):
'''
Method to copy resource to another location
Args:
destination (rdflib.term.URIRef, str): URI location to move resource
Returns:
(Resource) new, moved instance of resource
'''
# set move headers
destination_uri = self.repo.parse_uri(destination)
# http request
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ghukill/pyfc4 | pyfc4/models.py | Resource.delete | def delete(self, remove_tombstone=True):
'''
Method to delete resources.
Args:
remove_tombstone (bool): If True, will remove tombstone at uri/fcr:tombstone when removing resource.
Returns:
(bool)
'''
response = self.repo.api.http_request('DELETE', self.uri)
# update exists
if response.status_... | python | def delete(self, remove_tombstone=True):
'''
Method to delete resources.
Args:
remove_tombstone (bool): If True, will remove tombstone at uri/fcr:tombstone when removing resource.
Returns:
(bool)
'''
response = self.repo.api.http_request('DELETE', self.uri)
# update exists
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ghukill/pyfc4 | pyfc4/models.py | Resource.refresh | def refresh(self, refresh_binary=True):
'''
Performs GET request and refreshes RDF information for resource.
Args:
None
Returns:
None
'''
updated_self = self.repo.get_resource(self.uri)
# if resource type of updated_self != self, raise exception
if not isinstance(self, type(updated_self)):
... | python | def refresh(self, refresh_binary=True):
'''
Performs GET request and refreshes RDF information for resource.
Args:
None
Returns:
None
'''
updated_self = self.repo.get_resource(self.uri)
# if resource type of updated_self != self, raise exception
if not isinstance(self, type(updated_self)):
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ghukill/pyfc4 | pyfc4/models.py | Resource._build_rdf | def _build_rdf(self, data=None):
'''
Parse incoming rdf as self.rdf.orig_graph, create copy at self.rdf.graph
Args:
data (): payload from GET request, expected RDF content in various serialization formats
Returns:
None
'''
# recreate rdf data
self.rdf = SimpleNamespace()
self.rdf.data = data
... | python | def _build_rdf(self, data=None):
'''
Parse incoming rdf as self.rdf.orig_graph, create copy at self.rdf.graph
Args:
data (): payload from GET request, expected RDF content in various serialization formats
Returns:
None
'''
# recreate rdf data
self.rdf = SimpleNamespace()
self.rdf.data = data
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ghukill/pyfc4 | pyfc4/models.py | Resource._parse_graph | def _parse_graph(self):
'''
use Content-Type from headers to determine parsing method
Args:
None
Return:
None: sets self.rdf by parsing data from GET request, or setting blank graph of resource does not yet exist
'''
# if resource exists, parse self.rdf.data
if self.exists:
self.rdf.graph = s... | python | def _parse_graph(self):
'''
use Content-Type from headers to determine parsing method
Args:
None
Return:
None: sets self.rdf by parsing data from GET request, or setting blank graph of resource does not yet exist
'''
# if resource exists, parse self.rdf.data
if self.exists:
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ghukill/pyfc4 | pyfc4/models.py | Resource.parse_object_like_triples | def parse_object_like_triples(self):
'''
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Args:
None
Returns:
None: sets self.rdf.triples
'''
# parse triples as object-like attributes in self.rdf.triples
self.rdf.triples = SimpleNamespace() # prepare triples
for s,p,o in se... | python | def parse_object_like_triples(self):
'''
method to parse triples from self.rdf.graph for object-like
access
Args:
None
Returns:
None: sets self.rdf.triples
'''
# parse triples as object-like attributes in self.rdf.triples
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ghukill/pyfc4 | pyfc4/models.py | Resource._empty_resource_attributes | def _empty_resource_attributes(self):
'''
small method to empty values if resource is removed or absent
Args:
None
Return:
None: empties selected resource attributes
'''
self.status_code = 404
self.headers = {}
self.exists = False
# build RDF
self.rdf = self._build_rdf()
# if NonRDF, e... | python | def _empty_resource_attributes(self):
'''
small method to empty values if resource is removed or absent
Args:
None
Return:
None: empties selected resource attributes
'''
self.status_code = 404
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ghukill/pyfc4 | pyfc4/models.py | Resource.add_triple | def add_triple(self, p, o, auto_refresh=True):
'''
add triple by providing p,o, assumes s = subject
Args:
p (rdflib.term.URIRef): predicate
o (): object
auto_refresh (bool): whether or not to update object-like self.rdf.triples
Returns:
None: adds triple to self.rdf.graph
'''
self.rdf.graph.... | python | def add_triple(self, p, o, auto_refresh=True):
'''
add triple by providing p,o, assumes s = subject
Args:
p (rdflib.term.URIRef): predicate
o (): object
auto_refresh (bool): whether or not to update object-like self.rdf.triples
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ghukill/pyfc4 | pyfc4/models.py | Resource.set_triple | def set_triple(self, p, o, auto_refresh=True):
'''
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Args:
p (rdflib.term.URIRef): predicate
o (): object
auto_refresh (bool): whether or not to update object-like self.rdf.triples
Returns:
None: modifies pre-... | python | def set_triple(self, p, o, auto_refresh=True):
'''
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p (rdflib.term.URIRef): predicate
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ghukill/pyfc4 | pyfc4/models.py | Resource.remove_triple | def remove_triple(self, p, o, auto_refresh=True):
'''
remove triple by supplying p,o
Args:
p (rdflib.term.URIRef): predicate
o (): object
auto_refresh (bool): whether or not to update object-like self.rdf.triples
Returns:
None: removes triple from self.rdf.graph
'''
self.rdf.graph.remove((se... | python | def remove_triple(self, p, o, auto_refresh=True):
'''
remove triple by supplying p,o
Args:
p (rdflib.term.URIRef): predicate
o (): object
auto_refresh (bool): whether or not to update object-like self.rdf.triples
Returns:
None: removes triple from self.rdf.graph
'''
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ghukill/pyfc4 | pyfc4/models.py | Resource._handle_triple_refresh | def _handle_triple_refresh(self, auto_refresh):
'''
method to refresh self.rdf.triples if auto_refresh or defaults set to True
'''
# if auto_refresh set, and True, refresh
if auto_refresh:
self.parse_object_like_triples()
# else, if auto_refresh is not set (None), check repository instance default
e... | python | def _handle_triple_refresh(self, auto_refresh):
'''
method to refresh self.rdf.triples if auto_refresh or defaults set to True
'''
# if auto_refresh set, and True, refresh
if auto_refresh:
self.parse_object_like_triples()
# else, if auto_refresh is not set (None), check repository instance default
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ghukill/pyfc4 | pyfc4/models.py | Resource.update | def update(self, sparql_query_only=False, auto_refresh=None, update_binary=True):
'''
Method to update resources in repository. Firing this method computes the difference in the local modified graph and the original one,
creates an instance of SparqlUpdate and builds a sparql query that represents these differe... | python | def update(self, sparql_query_only=False, auto_refresh=None, update_binary=True):
'''
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ghukill/pyfc4 | pyfc4/models.py | Resource.children | def children(self, as_resources=False):
'''
method to return hierarchical children of this resource
Args:
as_resources (bool): if True, opens each as appropriate resource type instead of return URI only
Returns:
(list): list of resources
'''
children = [o for s,p,o in self.rdf.graph.triples((None... | python | def children(self, as_resources=False):
'''
method to return hierarchical children of this resource
Args:
as_resources (bool): if True, opens each as appropriate resource type instead of return URI only
Returns:
(list): list of resources
'''
children = [o for s,p,o in self.rdf.graph.triples((None... | [
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ghukill/pyfc4 | pyfc4/models.py | Resource.parents | def parents(self, as_resources=False):
'''
method to return hierarchical parents of this resource
Args:
as_resources (bool): if True, opens each as appropriate resource type instead of return URI only
Returns:
(list): list of resources
'''
parents = [o for s,p,o in self.rdf.graph.triples((None, se... | python | def parents(self, as_resources=False):
'''
method to return hierarchical parents of this resource
Args:
as_resources (bool): if True, opens each as appropriate resource type instead of return URI only
Returns:
(list): list of resources
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ghukill/pyfc4 | pyfc4/models.py | Resource.siblings | def siblings(self, as_resources=False):
'''
method to return hierarchical siblings of this resource.
Args:
as_resources (bool): if True, opens each as appropriate resource type instead of return URI only
Returns:
(list): list of resources
'''
siblings = set()
# loop through parents and get chil... | python | def siblings(self, as_resources=False):
'''
method to return hierarchical siblings of this resource.
Args:
as_resources (bool): if True, opens each as appropriate resource type instead of return URI only
Returns:
(list): list of resources
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ghukill/pyfc4 | pyfc4/models.py | Resource.create_version | def create_version(self, version_label):
'''
method to create a new version of the resource as it currently stands
- Note: this will create a version based on the current live instance of the resource,
not the local version, which might require self.update() to update.
Args:
version_label (str): label... | python | def create_version(self, version_label):
'''
method to create a new version of the resource as it currently stands
- Note: this will create a version based on the current live instance of the resource,
not the local version, which might require self.update() to update.
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ghukill/pyfc4 | pyfc4/models.py | Resource.get_versions | def get_versions(self):
'''
retrieves all versions of an object, and stores them at self.versions
Args:
None
Returns:
None: appends instances
'''
# get all versions
versions_response = self.repo.api.http_request('GET', '%s/fcr:versions' % self.uri)
# parse response
versions_graph = self.rep... | python | def get_versions(self):
'''
retrieves all versions of an object, and stores them at self.versions
Args:
None
Returns:
None: appends instances
'''
# get all versions
versions_response = self.repo.api.http_request('GET', '%s/fcr:versions' % self.uri)
# parse response
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ghukill/pyfc4 | pyfc4/models.py | Resource.dump | def dump(self,format='ttl'):
'''
Convenience method to return RDF data for resource,
optionally selecting serialization format.
Inspired by .dump from Samvera.
Args:
format (str): expecting serialization formats accepted by rdflib.serialization(format=)
'''
return self.rdf.graph.serialize(format=for... | python | def dump(self,format='ttl'):
'''
Convenience method to return RDF data for resource,
optionally selecting serialization format.
Inspired by .dump from Samvera.
Args:
format (str): expecting serialization formats accepted by rdflib.serialization(format=)
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format (str): expecting serialization formats accepted by rdflib.serialization(format=) | [
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ghukill/pyfc4 | pyfc4/models.py | ResourceVersion.revert_to | def revert_to(self):
'''
method to revert resource to this version by issuing PATCH
Args:
None
Returns:
None: sends PATCH request, and refreshes parent resource
'''
# send patch
response = self.resource.repo.api.http_request('PATCH', self.uri)
# if response 204
if response.status_code == 20... | python | def revert_to(self):
'''
method to revert resource to this version by issuing PATCH
Args:
None
Returns:
None: sends PATCH request, and refreshes parent resource
'''
# send patch
response = self.resource.repo.api.http_request('PATCH', self.uri)
# if response 204
if response.status_code == 20... | [
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ghukill/pyfc4 | pyfc4/models.py | ResourceVersion.delete | def delete(self):
'''
method to remove version from resource's history
'''
# send patch
response = self.resource.repo.api.http_request('DELETE', self.uri)
# if response 204
if response.status_code == 204:
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'''
method to remove version from resource's history
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# send patch
response = self.resource.repo.api.http_request('DELETE', self.uri)
# if response 204
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ghukill/pyfc4 | pyfc4/models.py | BinaryData.empty | def empty(self):
'''
Method to empty attributes, particularly for use when
object is deleted but remains as variable
'''
self.resource = None
self.delivery = None
self.data = None
self.stream = False
self.mimetype = None
self.location = None | python | def empty(self):
'''
Method to empty attributes, particularly for use when
object is deleted but remains as variable
'''
self.resource = None
self.delivery = None
self.data = None
self.stream = False
self.mimetype = None
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ghukill/pyfc4 | pyfc4/models.py | BinaryData.refresh | def refresh(self, updated_self):
'''
method to refresh binary attributes and data
Args:
updated_self (Resource): resource this binary data attaches to
Returns:
None: updates attributes
'''
logger.debug('refreshing binary attributes')
self.mimetype = updated_self.binary.mimetype
self.data = upd... | python | def refresh(self, updated_self):
'''
method to refresh binary attributes and data
Args:
updated_self (Resource): resource this binary data attaches to
Returns:
None: updates attributes
'''
logger.debug('refreshing binary attributes')
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ghukill/pyfc4 | pyfc4/models.py | BinaryData.parse_binary | def parse_binary(self):
'''
when retrieving a NonRDF resource, parse binary data and make available
via generators
'''
# derive mimetype
self.mimetype = self.resource.rdf.graph.value(
self.resource.uri,
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# get binary content as stremable r... | python | def parse_binary(self):
'''
when retrieving a NonRDF resource, parse binary data and make available
via generators
'''
# derive mimetype
self.mimetype = self.resource.rdf.graph.value(
self.resource.uri,
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ghukill/pyfc4 | pyfc4/models.py | BinaryData._prep_binary_content | def _prep_binary_content(self):
'''
Sets delivery method of either payload or header
Favors Content-Location header if set
Args:
None
Returns:
None: sets attributes in self.binary and headers
'''
# nothing present
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'''
Sets delivery method of either payload or header
Favors Content-Location header if set
Args:
None
Returns:
None: sets attributes in self.binary and headers
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ghukill/pyfc4 | pyfc4/models.py | NonRDFSource.fixity | def fixity(self, response_format=None):
'''
Issues fixity check, return parsed graph
Args:
None
Returns:
(dict): ('verdict':(bool): verdict of fixity check, 'premis_graph':(rdflib.Graph): parsed PREMIS graph from check)
'''
# if no response_format, use default
if not response_format:
response... | python | def fixity(self, response_format=None):
'''
Issues fixity check, return parsed graph
Args:
None
Returns:
(dict): ('verdict':(bool): verdict of fixity check, 'premis_graph':(rdflib.Graph): parsed PREMIS graph from check)
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sleibman/python-conduit | conduit/core.py | Channel.get_value | def get_value(self, consumer=None):
"""
If consumer is specified, the channel will record that consumer as having consumed the value.
"""
if consumer:
self.consumers[consumer] = True
return self.value | python | def get_value(self, consumer=None):
"""
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if consumer:
self.consumers[consumer] = True
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sleibman/python-conduit | conduit/core.py | DataBlock.get_output_channel | def get_output_channel(self, output_channel_name):
"""
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"""
if not output_channel_name in self.output_channels.keys():
self.output_channels[output_channel_name] = Channel()
self.output_channels[output_ch... | python | def get_output_channel(self, output_channel_name):
"""
get_output_channel will create a new channel object if necessary.
"""
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adamhadani/python-yelp | yelp/api.py | ReviewSearchApi.by_bounding_box | def by_bounding_box(self, tl_lat, tl_long, br_lat, br_long, term=None, num_biz_requested=None, category=None):
"""
Perform a Yelp Review Search based on a map bounding box.
Args:
tl_lat - bounding box top left latitude
tl_long - bounding box top left longitude
... | python | def by_bounding_box(self, tl_lat, tl_long, br_lat, br_long, term=None, num_biz_requested=None, category=None):
"""
Perform a Yelp Review Search based on a map bounding box.
Args:
tl_lat - bounding box top left latitude
tl_long - bounding box top left longitude
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adamhadani/python-yelp | yelp/api.py | ReviewSearchApi.by_geopoint | def by_geopoint(self, lat, long, radius, term=None, num_biz_requested=None, category=None):
"""
Perform a Yelp Review Search based on a geopoint and radius tuple.
Args:
lat - geopoint latitude
long - geopoint longitude
radius - search radius (in miles... | python | def by_geopoint(self, lat, long, radius, term=None, num_biz_requested=None, category=None):
"""
Perform a Yelp Review Search based on a geopoint and radius tuple.
Args:
lat - geopoint latitude
long - geopoint longitude
radius - search radius (in miles... | [
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adamhadani/python-yelp | yelp/api.py | ReviewSearchApi.by_location | def by_location(self, location, cc=None, radius=None, term=None, num_biz_requested=None, category=None):
"""
Perform a Yelp Review Search based on a location specifier.
Args:
location - textual location specifier of form: "address, neighborhood, city, state or zip, optional country"
... | python | def by_location(self, location, cc=None, radius=None, term=None, num_biz_requested=None, category=None):
"""
Perform a Yelp Review Search based on a location specifier.
Args:
location - textual location specifier of form: "address, neighborhood, city, state or zip, optional country"
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adamhadani/python-yelp | yelp/api.py | PhoneApi.by_phone | def by_phone(self, phone, cc=None):
"""
Perform a Yelp Phone API Search based on phone number given.
Args:
phone - Phone number to search by
cc - ISO 3166-1 alpha-2 country code. (Optional)
"""
header, content = self._http_request(self.BASE_URL, ph... | python | def by_phone(self, phone, cc=None):
"""
Perform a Yelp Phone API Search based on phone number given.
Args:
phone - Phone number to search by
cc - ISO 3166-1 alpha-2 country code. (Optional)
"""
header, content = self._http_request(self.BASE_URL, ph... | [
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adamhadani/python-yelp | yelp/api.py | NeighborhoodApi.by_geopoint | def by_geopoint(self, lat, long):
"""
Perform a Yelp Neighborhood API Search based on a geopoint.
Args:
lat - geopoint latitude
long - geopoint longitude
"""
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long - geopoint longitude
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Perform a Yelp Neighborhood API Search based on a location specifier.
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"""
Check if zeromq socket is available
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255BITS/hyperchamber | hyperchamber/io/__init__.py | sample | def sample(config, samples):
"""Upload a series of samples. Each sample has keys 'image' and 'label'.
Images are ignored if the rate limit is hit."""
url = get_api_path('sample.json')
multiple_files = []
images = [s['image'] for s in samples]
labels = [s['label'] for s in samples]
for image in images:
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"""Upload a series of samples. Each sample has keys 'image' and 'label'.
Images are ignored if the rate limit is hit."""
url = get_api_path('sample.json')
multiple_files = []
images = [s['image'] for s in samples]
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255BITS/hyperchamber | hyperchamber/io/__init__.py | measure | def measure(config, result, max_retries=10):
"""Records results on hyperchamber.io. Used when you are done testing a config."""
url = get_api_path('measurement.json')
data = {'config': config, 'result': result}
retries = 0
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try:
r = requests.post(url, data=json.du... | python | def measure(config, result, max_retries=10):
"""Records results on hyperchamber.io. Used when you are done testing a config."""
url = get_api_path('measurement.json')
data = {'config': config, 'result': result}
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stephenmcd/gunicorn-console | gunicorn_console.py | move_selection | def move_selection(reverse=False):
"""
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the currently selected.
"""
global selected_pid
if selected_pid not in gunicorns:
selected_pid = None
found = False
pids = sorted(gunicorns.keys(), reverse=reverse)
... | python | def move_selection(reverse=False):
"""
Goes through the list of gunicorns, setting the selected as the one after
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"""
global selected_pid
if selected_pid not in gunicorns:
selected_pid = None
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pids = sorted(gunicorns.keys(), reverse=reverse)
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stephenmcd/gunicorn-console | gunicorn_console.py | update_gunicorns | def update_gunicorns():
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stephenmcd/gunicorn-console | gunicorn_console.py | handle_keypress | def handle_keypress(screen):
"""
Check for a key being pressed and handle it if applicable.
"""
global selected_pid
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key = screen.getkey().upper()
except:
return
if key in ("KEY_DOWN", "J"):
move_selection()
elif key in ("KEY_UP", "K"):
move_selection(... | python | def handle_keypress(screen):
"""
Check for a key being pressed and handle it if applicable.
"""
global selected_pid
try:
key = screen.getkey().upper()
except:
return
if key in ("KEY_DOWN", "J"):
move_selection()
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stephenmcd/gunicorn-console | gunicorn_console.py | format_row | def format_row(pid="", port="", name="", mem="", workers="", prefix_char=" "):
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"""
row = "%s%-5s %-6s %-25s %8s %7s " \
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"""
Applies consistant padding to each of the columns in a row and serves as
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"""
row = "%s%-5s %-6s %-25s %8s %7s " \
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stephenmcd/gunicorn-console | gunicorn_console.py | display_output | def display_output(screen):
"""
Display the menu list of gunicorns.
"""
format_row() # Sets up the screen width.
screen_height = len(gunicorns) + len(instructions.split("\n")) + 9
if not gunicorns:
screen_height += 2 # A couple of blank lines are added when empty.
screen.erase()
... | python | def display_output(screen):
"""
Display the menu list of gunicorns.
"""
format_row() # Sets up the screen width.
screen_height = len(gunicorns) + len(instructions.split("\n")) + 9
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stephenmcd/gunicorn-console | gunicorn_console.py | main | def main():
"""
Main entry point for gunicorn_console.
"""
# Set up curses.
stdscr = curses.initscr()
curses.start_color()
curses.init_pair(1, foreground_colour, background_colour)
curses.noecho()
stdscr.keypad(True)
stdscr.nodelay(True)
try:
curses.curs_set(False)
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"""
Main entry point for gunicorn_console.
"""
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curses.start_color()
curses.init_pair(1, foreground_colour, background_colour)
curses.noecho()
stdscr.keypad(True)
stdscr.nodelay(True)
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curses.curs_set(False)
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pgxcentre/geneparse | geneparse/extract/extractor.py | _get_variant_silent | def _get_variant_silent(parser, variant):
"""Gets a variant from the parser while disabling logging."""
prev_log = config.LOG_NOT_FOUND
config.LOG_NOT_FOUND = False
results = parser.get_variant_genotypes(variant)
config.LOG_NOT_FOUND = prev_log
return results | python | def _get_variant_silent(parser, variant):
"""Gets a variant from the parser while disabling logging."""
prev_log = config.LOG_NOT_FOUND
config.LOG_NOT_FOUND = False
results = parser.get_variant_genotypes(variant)
config.LOG_NOT_FOUND = prev_log
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KnightConan/sspdatatables | src/sspdatatables/utils/enum.py | ExtendedEnum.describe | def describe(cls) -> None:
"""
Prints in the console a table showing all the attributes for all the
definitions inside the class
:return: None
"""
max_lengths = []
for attr_name in cls.attr_names():
attr_func = "%ss" % attr_name
attr_list ... | python | def describe(cls) -> None:
"""
Prints in the console a table showing all the attributes for all the
definitions inside the class
:return: None
"""
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geophysics-ubonn/crtomo_tools | src/td_plot.py | read_iter | def read_iter(use_fpi):
'''Return the path to the final .mag file either for the complex or the fpi
inversion.
'''
filename_rhosuffix = 'exe/inv.lastmod_rho'
filename = 'exe/inv.lastmod'
# filename HAS to exist. Otherwise the inversion was not finished
if(not os.path.isfile(filename)):
... | python | def read_iter(use_fpi):
'''Return the path to the final .mag file either for the complex or the fpi
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'''
filename_rhosuffix = 'exe/inv.lastmod_rho'
filename = 'exe/inv.lastmod'
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geophysics-ubonn/crtomo_tools | src/td_plot.py | list_datafiles | def list_datafiles():
'''Get the type of the tomodir and the highest iteration to list all files,
which will be plotted.
'''
is_cplx, is_fpi = td_type()
# get the highest iteration
it_rho = read_iter(is_fpi)
it_phase = read_iter(False)
# list the files
files = ['inv/coverage.mag']
... | python | def list_datafiles():
'''Get the type of the tomodir and the highest iteration to list all files,
which will be plotted.
'''
is_cplx, is_fpi = td_type()
# get the highest iteration
it_rho = read_iter(is_fpi)
it_phase = read_iter(False)
# list the files
files = ['inv/coverage.mag']
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geophysics-ubonn/crtomo_tools | src/td_plot.py | read_datafiles | def read_datafiles(files, dtype, column):
'''Load the datafiles and return cov, mag, phase and fpi phase values.
'''
pha = []
pha_fpi = []
for filename, filetype in zip(files, dtype):
if filetype == 'cov':
cov = load_cov(filename)
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mag =... | python | def read_datafiles(files, dtype, column):
'''Load the datafiles and return cov, mag, phase and fpi phase values.
'''
pha = []
pha_fpi = []
for filename, filetype in zip(files, dtype):
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geophysics-ubonn/crtomo_tools | src/td_plot.py | load_cov | def load_cov(name):
'''Load a datafile with coverage file structure.
'''
content = np.genfromtxt(name, skip_header=1, skip_footer=1, usecols=([2]))
return content | python | def load_cov(name):
'''Load a datafile with coverage file structure.
'''
content = np.genfromtxt(name, skip_header=1, skip_footer=1, usecols=([2]))
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geophysics-ubonn/crtomo_tools | src/td_plot.py | load_rho | def load_rho(name, column):
'''Load a datafile with rho structure like mag and phase
'''
try:
content = np.loadtxt(name, skiprows=1, usecols=([column]))
except:
raise ValueError('Given column to open does not exist.')
return content | python | def load_rho(name, column):
'''Load a datafile with rho structure like mag and phase
'''
try:
content = np.loadtxt(name, skiprows=1, usecols=([column]))
except:
raise ValueError('Given column to open does not exist.')
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geophysics-ubonn/crtomo_tools | src/td_plot.py | calc_complex | def calc_complex(mag, pha):
''' Calculate real and imaginary part of the complex conductivity from
magnitude and phase in log10.
'''
complx = [10 ** m * math.e ** (1j * p / 1e3) for m, p in zip(mag, pha)]
real = [math.log10((1 / c).real) for c in complx]
imag = []
for c in complx:
if... | python | def calc_complex(mag, pha):
''' Calculate real and imaginary part of the complex conductivity from
magnitude and phase in log10.
'''
complx = [10 ** m * math.e ** (1j * p / 1e3) for m, p in zip(mag, pha)]
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geophysics-ubonn/crtomo_tools | src/td_plot.py | plot_ratio | def plot_ratio(cid, ax, plotman, title, alpha, vmin, vmax,
xmin, xmax, zmin, zmax, xunit, cbtiks, elecs):
'''Plot ratio of two conductivity directions.
'''
# handle options
cblabel = 'anisotropy ratio'
zlabel = 'z [' + xunit + ']'
xlabel = 'x [' + xunit + ']'
# cm = 'brg'
... | python | def plot_ratio(cid, ax, plotman, title, alpha, vmin, vmax,
xmin, xmax, zmin, zmax, xunit, cbtiks, elecs):
'''Plot ratio of two conductivity directions.
'''
# handle options
cblabel = 'anisotropy ratio'
zlabel = 'z [' + xunit + ']'
xlabel = 'x [' + xunit + ']'
# cm = 'brg'
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geophysics-ubonn/crtomo_tools | src/td_plot.py | check_minmax | def check_minmax(plotman, cid, xmin, xmax, zmin, zmax, vmin, vmax):
'''Get min and max values for axes and colorbar if not given
'''
if xmin is None:
xmin = plotman.grid.grid['x'].min()
if xmax is None:
xmax = plotman.grid.grid['x'].max()
if zmin is None:
zmin = plotman.grid.... | python | def check_minmax(plotman, cid, xmin, xmax, zmin, zmax, vmin, vmax):
'''Get min and max values for axes and colorbar if not given
'''
if xmin is None:
xmin = plotman.grid.grid['x'].min()
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xmax = plotman.grid.grid['x'].max()
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zmin = plotman.grid.... | [
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unt-libraries/pyuntl | pyuntl/highwire_structure.py | citation_director | def citation_director(**kwargs):
"""Direct the citation elements based on their qualifier."""
qualifier = kwargs.get('qualifier', '')
content = kwargs.get('content', '')
if qualifier == 'publicationTitle':
return CitationJournalTitle(content=content)
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"""Direct the citation elements based on their qualifier."""
qualifier = kwargs.get('qualifier', '')
content = kwargs.get('content', '')
if qualifier == 'publicationTitle':
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unt-libraries/pyuntl | pyuntl/highwire_structure.py | identifier_director | def identifier_director(**kwargs):
"""Direct the identifier elements based on their qualifier."""
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content = kwargs.get('content', '')
if qualifier == 'ISBN':
return CitationISBN(content=content)
elif qualifier == 'ISSN':
return CitationISSN(con... | python | def identifier_director(**kwargs):
"""Direct the identifier elements based on their qualifier."""
qualifier = kwargs.get('qualifier', '')
content = kwargs.get('content', '')
if qualifier == 'ISBN':
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unt-libraries/pyuntl | pyuntl/highwire_structure.py | CitationAuthor.get_author | def get_author(self, **kwargs):
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children = kwargs.get('children', [])
creator_type_per = False
author_name = None
# Find the creator type in children.
for child in children... | python | def get_author(self, **kwargs):
"""Determine the authors from the creator field."""
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author_name = None
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unt-libraries/pyuntl | pyuntl/highwire_structure.py | CitationPublisher.get_publisher_name | def get_publisher_name(self, **kwargs):
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unt-libraries/pyuntl | pyuntl/highwire_structure.py | CitationPublicationDate.get_publication_date | def get_publication_date(self, **kwargs):
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"""Determine the creation date for the publication date."""
date_string = kwargs.get('content', '')
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unt-libraries/pyuntl | pyuntl/highwire_structure.py | CitationOnlineDate.get_online_date | def get_online_date(self, **kwargs):
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"""Get the online date from the meta creation date."""
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unt-libraries/pyuntl | pyuntl/highwire_structure.py | CitationDissertationInstitution.get_institution | def get_institution(self, **kwargs):
"""Get the dissertation institution."""
qualifier = kwargs.get('qualifier', '')
content = kwargs.get('content', '')
if qualifier == 'grantor':
return content
return None | python | def get_institution(self, **kwargs):
"""Get the dissertation institution."""
qualifier = kwargs.get('qualifier', '')
content = kwargs.get('content', '')
if qualifier == 'grantor':
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rhayes777/PyAutoFit | autofit/aggregator.py | PhaseOutput.model_results | def model_results(self) -> str:
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Reads the model.results file
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Reads the model.results file
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rhayes777/PyAutoFit | autofit/aggregator.py | PhaseOutput.header | def header(self) -> str:
"""
A header created by joining the pipeline, phase and data names
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rhayes777/PyAutoFit | autofit/aggregator.py | PhaseOutput.optimizer | def optimizer(self) -> non_linear.NonLinearOptimizer:
"""
The optimizer object that was used in this phase
"""
if self.__optimizer is None:
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self.__optimizer = pickle.loads(f.read())
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"""
The optimizer object that was used in this phase
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if self.__optimizer is None:
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rhayes777/PyAutoFit | autofit/aggregator.py | Aggregator.phases_with | def phases_with(self, **kwargs) -> [PhaseOutput]:
"""
Filters phases. If no arguments are passed all phases are returned. Arguments must be key value pairs, with
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Parameters
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kwargs
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rhayes777/PyAutoFit | autofit/aggregator.py | Aggregator.optimizers_with | def optimizers_with(self, **kwargs) -> [non_linear.NonLinearOptimizer]:
"""
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Filters, e.g. pipeline=pipeline1
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Load a list of optimizers for phases in the directory with zero or more filters applied.
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kwargs
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rhayes777/PyAutoFit | autofit/aggregator.py | Aggregator.model_results | def model_results(self, **kwargs) -> str:
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kwargs
Filters, e.g. pipeline=pipeline1
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peterbe/gg | gg/builtins/branches/gg_branches.py | branches | def branches(config, searchstring=""):
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repo = config.repo
branches_ = list(find(repo, searchstring))
if branches_:
merged = get_merged_branches(repo)
info_out("Found existing branches...")
print_list(branche... | python | def branches(config, searchstring=""):
"""List all branches. And if exactly 1 found, offer to check it out."""
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Riminder/python-riminder-api | riminder/base64Wrapper.py | decodebytes | def decodebytes(input):
"""Decode base64 string to byte array."""
py_version = sys.version_info[0]
if py_version >= 3:
return _decodebytes_py3(input)
return _decodebytes_py2(input) | python | def decodebytes(input):
"""Decode base64 string to byte array."""
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gofed/gofedlib | gofedlib/snapshot/capturer.py | ProjectCapturer.capture | def capture(self, commit = ""):
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Commit is relevant only for upstream providers.
If empty, the latest commit from provider repository is taken.
It is ignored for distribution providers.
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pgxcentre/geneparse | geneparse/logging.py | found_duplicates | def found_duplicates(counts):
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:type counts: list
"""
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lalinsky/mbdata | mbdata/utils/__init__.py | patch_model_schemas | def patch_model_schemas(mapping):
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Nic30/hwtGraph | hwtGraph/elk/fromHwt/statementRenderer.py | detectRamPorts | def detectRamPorts(stm: IfContainer, current_en: RtlSignalBase):
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:param current_en: curent en/clk signal
"""
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Nic30/hwtGraph | hwtGraph/elk/fromHwt/statementRenderer.py | StatementRenderer.addOutputPort | def addOutputPort(self, node: LNode, name: str,
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Nic30/hwtGraph | hwtGraph/elk/fromHwt/statementRenderer.py | StatementRenderer.renderContent | def renderContent(self):
"""
Walk from outputs to inputs
for each public signal register port of wrap node if required
lazy load all operator and statement nodes for signals
"""
stm = self.stm
portCtx = self.portCtx
# for each inputs and outputs render exp... | python | def renderContent(self):
"""
Walk from outputs to inputs
for each public signal register port of wrap node if required
lazy load all operator and statement nodes for signals
"""
stm = self.stm
portCtx = self.portCtx
# for each inputs and outputs render exp... | [
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gofed/gofedlib | gofedlib/distribution/packagenamegenerator.py | PackageNameGenerator.generate | def generate(self, project):
"""
Package name construction is based on provider, not on prefix.
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"""
for assignment in self.s2n_mapping:
if assignment["ipprefix"] == project:
self._name = assignment["package"]
return self
#
# github.com -> github
... | python | def generate(self, project):
"""
Package name construction is based on provider, not on prefix.
Prefix does not have to equal provider_prefix.
"""
for assignment in self.s2n_mapping:
if assignment["ipprefix"] == project:
self._name = assignment["package"]
return self
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NikolayDachev/jadm | lib/paramiko-1.14.1/paramiko/hostkeys.py | HostKeys.hash_host | def hash_host(hostname, salt=None):
"""
Return a "hashed" form of the hostname, as used by OpenSSH when storing
hashed hostnames in the known_hosts file.
:param str hostname: the hostname to hash
:param str salt: optional salt to use when hashing (must be 20 bytes long)
... | python | def hash_host(hostname, salt=None):
"""
Return a "hashed" form of the hostname, as used by OpenSSH when storing
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:param str hostname: the hostname to hash
:param str salt: optional salt to use when hashing (must be 20 bytes long)
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geophysics-ubonn/crtomo_tools | lib/crtomo/grid.py | crt_grid._read_elem_nodes | def _read_elem_nodes(self, fid):
""" Read the nodes from an opened elem.dat file. Correct for CutMcK
transformations.
We store three typed of nodes in the dict 'nodes':
* "raw" : as read from the elem.dat file
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""" Read the nodes from an opened elem.dat file. Correct for CutMcK
transformations.
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* "raw" : as read from the elem.dat file
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geophysics-ubonn/crtomo_tools | lib/crtomo/grid.py | crt_grid.calculate_dimensions | def calculate_dimensions(self):
"""For a regular grid, calculate the element and node dimensions
"""
x_coordinates = np.sort(self.grid['x'][:, 0]) # first x node
self.nr_nodes_z = np.where(x_coordinates == x_coordinates[0])[0].size
self.nr_elements_x = self.elements.shape[0] / (... | python | def calculate_dimensions(self):
"""For a regular grid, calculate the element and node dimensions
"""
x_coordinates = np.sort(self.grid['x'][:, 0]) # first x node
self.nr_nodes_z = np.where(x_coordinates == x_coordinates[0])[0].size
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geophysics-ubonn/crtomo_tools | lib/crtomo/grid.py | crt_grid._read_elem_neighbors | def _read_elem_neighbors(self, fid):
"""Read the boundary-element-neighbors from the end of the file
"""
# get number of boundary elements
# types 11 and 12 are boundary elements
sizes = sum([len(self.element_data[key]) for key in (11, 12) if
self.element_dat... | python | def _read_elem_neighbors(self, fid):
"""Read the boundary-element-neighbors from the end of the file
"""
# get number of boundary elements
# types 11 and 12 are boundary elements
sizes = sum([len(self.element_data[key]) for key in (11, 12) if
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geophysics-ubonn/crtomo_tools | lib/crtomo/grid.py | crt_grid.load_grid | def load_grid(self, elem_file, elec_file):
"""Load elem.dat and elec.dat
"""
self.load_elem_file(elem_file)
self.load_elec_file(elec_file) | python | def load_grid(self, elem_file, elec_file):
"""Load elem.dat and elec.dat
"""
self.load_elem_file(elem_file)
self.load_elec_file(elec_file) | [
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geophysics-ubonn/crtomo_tools | lib/crtomo/grid.py | crt_grid.get_element_centroids | def get_element_centroids(self):
"""return the central points of all elements
Returns
-------
Nx2 array
x/z coordinates for all (N) elements
"""
centroids = np.vstack((
np.mean(self.grid['x'], axis=1), np.mean(self.grid['z'], axis=1)
)).T
... | python | def get_element_centroids(self):
"""return the central points of all elements
Returns
-------
Nx2 array
x/z coordinates for all (N) elements
"""
centroids = np.vstack((
np.mean(self.grid['x'], axis=1), np.mean(self.grid['z'], axis=1)
)).T
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geophysics-ubonn/crtomo_tools | lib/crtomo/grid.py | crt_grid.get_internal_angles | def get_internal_angles(self):
"""Compute all internal angles of the grid
Returns
-------
numpy.ndarray
NxK array with N the number of elements, and K the number of nodes,
filled with the internal angles in degrees
"""
angles = []
for el... | python | def get_internal_angles(self):
"""Compute all internal angles of the grid
Returns
-------
numpy.ndarray
NxK array with N the number of elements, and K the number of nodes,
filled with the internal angles in degrees
"""
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geophysics-ubonn/crtomo_tools | lib/crtomo/grid.py | crt_grid.Wm | def Wm(self):
"""Return the smoothing regularization matrix Wm of the grid
"""
centroids = self.get_element_centroids()
Wm = scipy.sparse.csr_matrix(
(self.nr_of_elements, self.nr_of_elements))
# Wm = np.zeros((self.nr_of_elements, self.nr_of_elements))
for ... | python | def Wm(self):
"""Return the smoothing regularization matrix Wm of the grid
"""
centroids = self.get_element_centroids()
Wm = scipy.sparse.csr_matrix(
(self.nr_of_elements, self.nr_of_elements))
# Wm = np.zeros((self.nr_of_elements, self.nr_of_elements))
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geophysics-ubonn/crtomo_tools | lib/crtomo/tdManager.py | tdMan.create_tomodir | def create_tomodir(self, directory):
"""Create a tomodir subdirectory structure in the given directory
"""
pwd = os.getcwd()
if not os.path.isdir(directory):
os.makedirs(directory)
os.chdir(directory)
directories = (
'config',
'exe',
... | python | def create_tomodir(self, directory):
"""Create a tomodir subdirectory structure in the given directory
"""
pwd = os.getcwd()
if not os.path.isdir(directory):
os.makedirs(directory)
os.chdir(directory)
directories = (
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geophysics-ubonn/crtomo_tools | lib/crtomo/tdManager.py | tdMan.load_rho_file | def load_rho_file(self, filename):
"""Load a forward model from a rho.dat file
Parameters
----------
filename: string
filename to rho.dat file
Returns
-------
pid_mag: int
parameter id for the magnitude model
pid_pha: int
... | python | def load_rho_file(self, filename):
"""Load a forward model from a rho.dat file
Parameters
----------
filename: string
filename to rho.dat file
Returns
-------
pid_mag: int
parameter id for the magnitude model
pid_pha: int
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geophysics-ubonn/crtomo_tools | lib/crtomo/tdManager.py | tdMan.save_to_tomodir | def save_to_tomodir(self, directory):
"""Save the tomodir instance to a directory structure.
Note
----
Test cases:
* modeling only
* inversion only
* modeling and inversion
"""
self.create_tomodir(directory)
self.grid.save_... | python | def save_to_tomodir(self, directory):
"""Save the tomodir instance to a directory structure.
Note
----
Test cases:
* modeling only
* inversion only
* modeling and inversion
"""
self.create_tomodir(directory)
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geophysics-ubonn/crtomo_tools | lib/crtomo/tdManager.py | tdMan._save_sensitivities | def _save_sensitivities(self, directory):
"""save sensitivities to a directory
"""
print('saving sensitivities')
digits = int(np.ceil(np.log10(self.configs.configs.shape[0])))
for i in range(0, self.configs.configs.shape[0]):
sens_data, meta_data = self.get_sensitivit... | python | def _save_sensitivities(self, directory):
"""save sensitivities to a directory
"""
print('saving sensitivities')
digits = int(np.ceil(np.log10(self.configs.configs.shape[0])))
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"a",
"directory"
] | 27c3e21a557f8df1c12455b96c4c2e00e08a5b4a | https://github.com/geophysics-ubonn/crtomo_tools/blob/27c3e21a557f8df1c12455b96c4c2e00e08a5b4a/lib/crtomo/tdManager.py#L385-L407 | train | 12,599 |
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