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readbeyond/aeneas
aeneas/textfile.py
TransliterationMap._build_map
def _build_map(self): """ Read the map file at path. """ if gf.is_py2_narrow_build(): self.log_warn(u"Running on a Python 2 narrow build: be aware that Unicode chars above 0x10000 cannot be replaced correctly.") self.trans_map = {} with io.open(self.file_path, "r", encoding="utf-8") as file_obj: contents = file_obj.read().replace(u"\t", u" ") for line in contents.splitlines(): # ignore lines starting with "#" or blank (after stripping) if not line.startswith(u"#"): line = line.strip() if len(line) > 0: self._process_map_rule(line)
python
def _build_map(self): """ Read the map file at path. """ if gf.is_py2_narrow_build(): self.log_warn(u"Running on a Python 2 narrow build: be aware that Unicode chars above 0x10000 cannot be replaced correctly.") self.trans_map = {} with io.open(self.file_path, "r", encoding="utf-8") as file_obj: contents = file_obj.read().replace(u"\t", u" ") for line in contents.splitlines(): # ignore lines starting with "#" or blank (after stripping) if not line.startswith(u"#"): line = line.strip() if len(line) > 0: self._process_map_rule(line)
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Read the map file at path.
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/textfile.py#L1241-L1255
train
227,100
readbeyond/aeneas
aeneas/textfile.py
TransliterationMap._process_map_rule
def _process_map_rule(self, line): """ Process the line string containing a map rule. """ result = self.REPLACE_REGEX.match(line) if result is not None: what = self._process_first_group(result.group(1)) replacement = self._process_second_group(result.group(2)) for char in what: self.trans_map[char] = replacement self.log([u"Adding rule: replace '%s' with '%s'", char, replacement]) else: result = self.DELETE_REGEX.match(line) if result is not None: what = self._process_first_group(result.group(1)) for char in what: self.trans_map[char] = "" self.log([u"Adding rule: delete '%s'", char])
python
def _process_map_rule(self, line): """ Process the line string containing a map rule. """ result = self.REPLACE_REGEX.match(line) if result is not None: what = self._process_first_group(result.group(1)) replacement = self._process_second_group(result.group(2)) for char in what: self.trans_map[char] = replacement self.log([u"Adding rule: replace '%s' with '%s'", char, replacement]) else: result = self.DELETE_REGEX.match(line) if result is not None: what = self._process_first_group(result.group(1)) for char in what: self.trans_map[char] = "" self.log([u"Adding rule: delete '%s'", char])
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Process the line string containing a map rule.
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/textfile.py#L1257-L1274
train
227,101
readbeyond/aeneas
aeneas/textfile.py
TransliterationMap._process_first_group
def _process_first_group(self, group): """ Process the first group of a rule. """ if "-" in group: # range if len(group.split("-")) == 2: arr = group.split("-") start = self._parse_codepoint(arr[0]) end = self._parse_codepoint(arr[1]) else: # single char/U+xxxx start = self._parse_codepoint(group) end = start result = [] if (start > -1) and (end >= start): for index in range(start, end + 1): result.append(gf.safe_unichr(index)) return result
python
def _process_first_group(self, group): """ Process the first group of a rule. """ if "-" in group: # range if len(group.split("-")) == 2: arr = group.split("-") start = self._parse_codepoint(arr[0]) end = self._parse_codepoint(arr[1]) else: # single char/U+xxxx start = self._parse_codepoint(group) end = start result = [] if (start > -1) and (end >= start): for index in range(start, end + 1): result.append(gf.safe_unichr(index)) return result
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Process the first group of a rule.
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/textfile.py#L1276-L1294
train
227,102
readbeyond/aeneas
aeneas/executejob.py
ExecuteJob.load_job
def load_job(self, job): """ Load the job from the given ``Job`` object. :param job: the job to load :type job: :class:`~aeneas.job.Job` :raises: :class:`~aeneas.executejob.ExecuteJobInputError`: if ``job`` is not an instance of :class:`~aeneas.job.Job` """ if not isinstance(job, Job): self.log_exc(u"job is not an instance of Job", None, True, ExecuteJobInputError) self.job = job
python
def load_job(self, job): """ Load the job from the given ``Job`` object. :param job: the job to load :type job: :class:`~aeneas.job.Job` :raises: :class:`~aeneas.executejob.ExecuteJobInputError`: if ``job`` is not an instance of :class:`~aeneas.job.Job` """ if not isinstance(job, Job): self.log_exc(u"job is not an instance of Job", None, True, ExecuteJobInputError) self.job = job
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/executejob.py#L110-L120
train
227,103
readbeyond/aeneas
aeneas/executejob.py
ExecuteJob.execute
def execute(self): """ Execute the job, that is, execute all of its tasks. Each produced sync map will be stored inside the corresponding task object. :raises: :class:`~aeneas.executejob.ExecuteJobExecutionError`: if there is a problem during the job execution """ self.log(u"Executing job") if self.job is None: self.log_exc(u"The job object is None", None, True, ExecuteJobExecutionError) if len(self.job) == 0: self.log_exc(u"The job has no tasks", None, True, ExecuteJobExecutionError) job_max_tasks = self.rconf[RuntimeConfiguration.JOB_MAX_TASKS] if (job_max_tasks > 0) and (len(self.job) > job_max_tasks): self.log_exc(u"The Job has %d Tasks, more than the maximum allowed (%d)." % (len(self.job), job_max_tasks), None, True, ExecuteJobExecutionError) self.log([u"Number of tasks: '%d'", len(self.job)]) for task in self.job.tasks: try: custom_id = task.configuration["custom_id"] self.log([u"Executing task '%s'...", custom_id]) executor = ExecuteTask(task, rconf=self.rconf, logger=self.logger) executor.execute() self.log([u"Executing task '%s'... done", custom_id]) except Exception as exc: self.log_exc(u"Error while executing task '%s'" % (custom_id), exc, True, ExecuteJobExecutionError) self.log(u"Executing task: succeeded") self.log(u"Executing job: succeeded")
python
def execute(self): """ Execute the job, that is, execute all of its tasks. Each produced sync map will be stored inside the corresponding task object. :raises: :class:`~aeneas.executejob.ExecuteJobExecutionError`: if there is a problem during the job execution """ self.log(u"Executing job") if self.job is None: self.log_exc(u"The job object is None", None, True, ExecuteJobExecutionError) if len(self.job) == 0: self.log_exc(u"The job has no tasks", None, True, ExecuteJobExecutionError) job_max_tasks = self.rconf[RuntimeConfiguration.JOB_MAX_TASKS] if (job_max_tasks > 0) and (len(self.job) > job_max_tasks): self.log_exc(u"The Job has %d Tasks, more than the maximum allowed (%d)." % (len(self.job), job_max_tasks), None, True, ExecuteJobExecutionError) self.log([u"Number of tasks: '%d'", len(self.job)]) for task in self.job.tasks: try: custom_id = task.configuration["custom_id"] self.log([u"Executing task '%s'...", custom_id]) executor = ExecuteTask(task, rconf=self.rconf, logger=self.logger) executor.execute() self.log([u"Executing task '%s'... done", custom_id]) except Exception as exc: self.log_exc(u"Error while executing task '%s'" % (custom_id), exc, True, ExecuteJobExecutionError) self.log(u"Executing task: succeeded") self.log(u"Executing job: succeeded")
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Execute the job, that is, execute all of its tasks. Each produced sync map will be stored inside the corresponding task object. :raises: :class:`~aeneas.executejob.ExecuteJobExecutionError`: if there is a problem during the job execution
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/executejob.py#L187-L218
train
227,104
readbeyond/aeneas
aeneas/executejob.py
ExecuteJob.write_output_container
def write_output_container(self, output_directory_path): """ Write the output container for this job. Return the path to output container, which is the concatenation of ``output_directory_path`` and of the output container file or directory name. :param string output_directory_path: the path to a directory where the output container must be created :rtype: string :raises: :class:`~aeneas.executejob.ExecuteJobOutputError`: if there is a problem while writing the output container """ self.log(u"Writing output container for this job") if self.job is None: self.log_exc(u"The job object is None", None, True, ExecuteJobOutputError) if len(self.job) == 0: self.log_exc(u"The job has no tasks", None, True, ExecuteJobOutputError) self.log([u"Number of tasks: '%d'", len(self.job)]) # create temporary directory where the sync map files # will be created # this temporary directory will be compressed into # the output container self.tmp_directory = gf.tmp_directory(root=self.rconf[RuntimeConfiguration.TMP_PATH]) self.log([u"Created temporary directory '%s'", self.tmp_directory]) for task in self.job.tasks: custom_id = task.configuration["custom_id"] # check if the task has sync map and sync map file path if task.sync_map_file_path is None: self.log_exc(u"Task '%s' has sync_map_file_path not set" % (custom_id), None, True, ExecuteJobOutputError) if task.sync_map is None: self.log_exc(u"Task '%s' has sync_map not set" % (custom_id), None, True, ExecuteJobOutputError) try: # output sync map self.log([u"Outputting sync map for task '%s'...", custom_id]) task.output_sync_map_file(self.tmp_directory) self.log([u"Outputting sync map for task '%s'... done", custom_id]) except Exception as exc: self.log_exc(u"Error while outputting sync map for task '%s'" % (custom_id), None, True, ExecuteJobOutputError) # get output container info output_container_format = self.job.configuration["o_container_format"] self.log([u"Output container format: '%s'", output_container_format]) output_file_name = self.job.configuration["o_name"] if ((output_container_format != ContainerFormat.UNPACKED) and (not output_file_name.endswith(output_container_format))): self.log(u"Adding extension to output_file_name") output_file_name += "." + output_container_format self.log([u"Output file name: '%s'", output_file_name]) output_file_path = gf.norm_join( output_directory_path, output_file_name ) self.log([u"Output file path: '%s'", output_file_path]) try: self.log(u"Compressing...") container = Container( output_file_path, output_container_format, logger=self.logger ) container.compress(self.tmp_directory) self.log(u"Compressing... done") self.log([u"Created output file: '%s'", output_file_path]) self.log(u"Writing output container for this job: succeeded") self.clean(False) return output_file_path except Exception as exc: self.clean(False) self.log_exc(u"Error while compressing", exc, True, ExecuteJobOutputError) return None
python
def write_output_container(self, output_directory_path): """ Write the output container for this job. Return the path to output container, which is the concatenation of ``output_directory_path`` and of the output container file or directory name. :param string output_directory_path: the path to a directory where the output container must be created :rtype: string :raises: :class:`~aeneas.executejob.ExecuteJobOutputError`: if there is a problem while writing the output container """ self.log(u"Writing output container for this job") if self.job is None: self.log_exc(u"The job object is None", None, True, ExecuteJobOutputError) if len(self.job) == 0: self.log_exc(u"The job has no tasks", None, True, ExecuteJobOutputError) self.log([u"Number of tasks: '%d'", len(self.job)]) # create temporary directory where the sync map files # will be created # this temporary directory will be compressed into # the output container self.tmp_directory = gf.tmp_directory(root=self.rconf[RuntimeConfiguration.TMP_PATH]) self.log([u"Created temporary directory '%s'", self.tmp_directory]) for task in self.job.tasks: custom_id = task.configuration["custom_id"] # check if the task has sync map and sync map file path if task.sync_map_file_path is None: self.log_exc(u"Task '%s' has sync_map_file_path not set" % (custom_id), None, True, ExecuteJobOutputError) if task.sync_map is None: self.log_exc(u"Task '%s' has sync_map not set" % (custom_id), None, True, ExecuteJobOutputError) try: # output sync map self.log([u"Outputting sync map for task '%s'...", custom_id]) task.output_sync_map_file(self.tmp_directory) self.log([u"Outputting sync map for task '%s'... done", custom_id]) except Exception as exc: self.log_exc(u"Error while outputting sync map for task '%s'" % (custom_id), None, True, ExecuteJobOutputError) # get output container info output_container_format = self.job.configuration["o_container_format"] self.log([u"Output container format: '%s'", output_container_format]) output_file_name = self.job.configuration["o_name"] if ((output_container_format != ContainerFormat.UNPACKED) and (not output_file_name.endswith(output_container_format))): self.log(u"Adding extension to output_file_name") output_file_name += "." + output_container_format self.log([u"Output file name: '%s'", output_file_name]) output_file_path = gf.norm_join( output_directory_path, output_file_name ) self.log([u"Output file path: '%s'", output_file_path]) try: self.log(u"Compressing...") container = Container( output_file_path, output_container_format, logger=self.logger ) container.compress(self.tmp_directory) self.log(u"Compressing... done") self.log([u"Created output file: '%s'", output_file_path]) self.log(u"Writing output container for this job: succeeded") self.clean(False) return output_file_path except Exception as exc: self.clean(False) self.log_exc(u"Error while compressing", exc, True, ExecuteJobOutputError) return None
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Write the output container for this job. Return the path to output container, which is the concatenation of ``output_directory_path`` and of the output container file or directory name. :param string output_directory_path: the path to a directory where the output container must be created :rtype: string :raises: :class:`~aeneas.executejob.ExecuteJobOutputError`: if there is a problem while writing the output container
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/executejob.py#L220-L296
train
227,105
readbeyond/aeneas
aeneas/executejob.py
ExecuteJob.clean
def clean(self, remove_working_directory=True): """ Remove the temporary directory. If ``remove_working_directory`` is ``True`` remove the working directory as well, otherwise just remove the temporary directory. :param bool remove_working_directory: if ``True``, remove the working directory as well """ if remove_working_directory is not None: self.log(u"Removing working directory... ") gf.delete_directory(self.working_directory) self.working_directory = None self.log(u"Removing working directory... done") self.log(u"Removing temporary directory... ") gf.delete_directory(self.tmp_directory) self.tmp_directory = None self.log(u"Removing temporary directory... done")
python
def clean(self, remove_working_directory=True): """ Remove the temporary directory. If ``remove_working_directory`` is ``True`` remove the working directory as well, otherwise just remove the temporary directory. :param bool remove_working_directory: if ``True``, remove the working directory as well """ if remove_working_directory is not None: self.log(u"Removing working directory... ") gf.delete_directory(self.working_directory) self.working_directory = None self.log(u"Removing working directory... done") self.log(u"Removing temporary directory... ") gf.delete_directory(self.tmp_directory) self.tmp_directory = None self.log(u"Removing temporary directory... done")
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Remove the temporary directory. If ``remove_working_directory`` is ``True`` remove the working directory as well, otherwise just remove the temporary directory. :param bool remove_working_directory: if ``True``, remove the working directory as well
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/executejob.py#L298-L316
train
227,106
readbeyond/aeneas
aeneas/tools/plot_waveform.py
PlotWaveformCLI._read_syncmap_file
def _read_syncmap_file(self, path, extension, text=False): """ Read labels from a SyncMap file """ syncmap = SyncMap(logger=self.logger) syncmap.read(extension, path, parameters=None) if text: return [(f.begin, f.end, u" ".join(f.text_fragment.lines)) for f in syncmap.fragments] return [(f.begin, f.end, f.text_fragment.identifier) for f in syncmap.fragments]
python
def _read_syncmap_file(self, path, extension, text=False): """ Read labels from a SyncMap file """ syncmap = SyncMap(logger=self.logger) syncmap.read(extension, path, parameters=None) if text: return [(f.begin, f.end, u" ".join(f.text_fragment.lines)) for f in syncmap.fragments] return [(f.begin, f.end, f.text_fragment.identifier) for f in syncmap.fragments]
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Read labels from a SyncMap file
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/tools/plot_waveform.py#L156-L162
train
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readbeyond/aeneas
aeneas/syncmap/__init__.py
SyncMap.has_adjacent_leaves_only
def has_adjacent_leaves_only(self): """ Return ``True`` if the sync map fragments which are the leaves of the sync map tree are all adjacent. :rtype: bool .. versionadded:: 1.7.0 """ leaves = self.leaves() for i in range(len(leaves) - 1): current_interval = leaves[i].interval next_interval = leaves[i + 1].interval if not current_interval.is_adjacent_before(next_interval): return False return True
python
def has_adjacent_leaves_only(self): """ Return ``True`` if the sync map fragments which are the leaves of the sync map tree are all adjacent. :rtype: bool .. versionadded:: 1.7.0 """ leaves = self.leaves() for i in range(len(leaves) - 1): current_interval = leaves[i].interval next_interval = leaves[i + 1].interval if not current_interval.is_adjacent_before(next_interval): return False return True
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/syncmap/__init__.py#L169-L185
train
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readbeyond/aeneas
aeneas/syncmap/__init__.py
SyncMap.json_string
def json_string(self): """ Return a JSON representation of the sync map. :rtype: string .. versionadded:: 1.3.1 """ def visit_children(node): """ Recursively visit the fragments_tree """ output_fragments = [] for child in node.children_not_empty: fragment = child.value text = fragment.text_fragment output_fragments.append({ "id": text.identifier, "language": text.language, "lines": text.lines, "begin": gf.time_to_ssmmm(fragment.begin), "end": gf.time_to_ssmmm(fragment.end), "children": visit_children(child) }) return output_fragments output_fragments = visit_children(self.fragments_tree) return gf.safe_unicode( json.dumps({"fragments": output_fragments}, indent=1, sort_keys=True) )
python
def json_string(self): """ Return a JSON representation of the sync map. :rtype: string .. versionadded:: 1.3.1 """ def visit_children(node): """ Recursively visit the fragments_tree """ output_fragments = [] for child in node.children_not_empty: fragment = child.value text = fragment.text_fragment output_fragments.append({ "id": text.identifier, "language": text.language, "lines": text.lines, "begin": gf.time_to_ssmmm(fragment.begin), "end": gf.time_to_ssmmm(fragment.end), "children": visit_children(child) }) return output_fragments output_fragments = visit_children(self.fragments_tree) return gf.safe_unicode( json.dumps({"fragments": output_fragments}, indent=1, sort_keys=True) )
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/syncmap/__init__.py#L248-L274
train
227,109
readbeyond/aeneas
aeneas/syncmap/__init__.py
SyncMap.add_fragment
def add_fragment(self, fragment, as_last=True): """ Add the given sync map fragment, as the first or last child of the root node of the sync map tree. :param fragment: the sync map fragment to be added :type fragment: :class:`~aeneas.syncmap.fragment.SyncMapFragment` :param bool as_last: if ``True``, append fragment; otherwise prepend it :raises: TypeError: if ``fragment`` is ``None`` or it is not an instance of :class:`~aeneas.syncmap.fragment.SyncMapFragment` """ if not isinstance(fragment, SyncMapFragment): self.log_exc(u"fragment is not an instance of SyncMapFragment", None, True, TypeError) self.fragments_tree.add_child(Tree(value=fragment), as_last=as_last)
python
def add_fragment(self, fragment, as_last=True): """ Add the given sync map fragment, as the first or last child of the root node of the sync map tree. :param fragment: the sync map fragment to be added :type fragment: :class:`~aeneas.syncmap.fragment.SyncMapFragment` :param bool as_last: if ``True``, append fragment; otherwise prepend it :raises: TypeError: if ``fragment`` is ``None`` or it is not an instance of :class:`~aeneas.syncmap.fragment.SyncMapFragment` """ if not isinstance(fragment, SyncMapFragment): self.log_exc(u"fragment is not an instance of SyncMapFragment", None, True, TypeError) self.fragments_tree.add_child(Tree(value=fragment), as_last=as_last)
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/syncmap/__init__.py#L276-L290
train
227,110
readbeyond/aeneas
aeneas/syncmap/__init__.py
SyncMap.output_html_for_tuning
def output_html_for_tuning( self, audio_file_path, output_file_path, parameters=None ): """ Output an HTML file for fine tuning the sync map manually. :param string audio_file_path: the path to the associated audio file :param string output_file_path: the path to the output file to write :param dict parameters: additional parameters .. versionadded:: 1.3.1 """ if not gf.file_can_be_written(output_file_path): self.log_exc(u"Cannot output HTML file '%s'. Wrong permissions?" % (output_file_path), None, True, OSError) if parameters is None: parameters = {} audio_file_path_absolute = gf.fix_slash(os.path.abspath(audio_file_path)) template_path_absolute = gf.absolute_path(self.FINETUNEAS_PATH, __file__) with io.open(template_path_absolute, "r", encoding="utf-8") as file_obj: template = file_obj.read() for repl in self.FINETUNEAS_REPLACEMENTS: template = template.replace(repl[0], repl[1]) template = template.replace( self.FINETUNEAS_REPLACE_AUDIOFILEPATH, u"audioFilePath = \"file://%s\";" % audio_file_path_absolute ) template = template.replace( self.FINETUNEAS_REPLACE_FRAGMENTS, u"fragments = (%s).fragments;" % self.json_string ) if gc.PPN_TASK_OS_FILE_FORMAT in parameters: output_format = parameters[gc.PPN_TASK_OS_FILE_FORMAT] if output_format in self.FINETUNEAS_ALLOWED_FORMATS: template = template.replace( self.FINETUNEAS_REPLACE_OUTPUT_FORMAT, u"outputFormat = \"%s\";" % output_format ) if output_format == "smil": for key, placeholder, replacement in [ ( gc.PPN_TASK_OS_FILE_SMIL_AUDIO_REF, self.FINETUNEAS_REPLACE_SMIL_AUDIOREF, "audioref = \"%s\";" ), ( gc.PPN_TASK_OS_FILE_SMIL_PAGE_REF, self.FINETUNEAS_REPLACE_SMIL_PAGEREF, "pageref = \"%s\";" ), ]: if key in parameters: template = template.replace( placeholder, replacement % parameters[key] ) with io.open(output_file_path, "w", encoding="utf-8") as file_obj: file_obj.write(template)
python
def output_html_for_tuning( self, audio_file_path, output_file_path, parameters=None ): """ Output an HTML file for fine tuning the sync map manually. :param string audio_file_path: the path to the associated audio file :param string output_file_path: the path to the output file to write :param dict parameters: additional parameters .. versionadded:: 1.3.1 """ if not gf.file_can_be_written(output_file_path): self.log_exc(u"Cannot output HTML file '%s'. Wrong permissions?" % (output_file_path), None, True, OSError) if parameters is None: parameters = {} audio_file_path_absolute = gf.fix_slash(os.path.abspath(audio_file_path)) template_path_absolute = gf.absolute_path(self.FINETUNEAS_PATH, __file__) with io.open(template_path_absolute, "r", encoding="utf-8") as file_obj: template = file_obj.read() for repl in self.FINETUNEAS_REPLACEMENTS: template = template.replace(repl[0], repl[1]) template = template.replace( self.FINETUNEAS_REPLACE_AUDIOFILEPATH, u"audioFilePath = \"file://%s\";" % audio_file_path_absolute ) template = template.replace( self.FINETUNEAS_REPLACE_FRAGMENTS, u"fragments = (%s).fragments;" % self.json_string ) if gc.PPN_TASK_OS_FILE_FORMAT in parameters: output_format = parameters[gc.PPN_TASK_OS_FILE_FORMAT] if output_format in self.FINETUNEAS_ALLOWED_FORMATS: template = template.replace( self.FINETUNEAS_REPLACE_OUTPUT_FORMAT, u"outputFormat = \"%s\";" % output_format ) if output_format == "smil": for key, placeholder, replacement in [ ( gc.PPN_TASK_OS_FILE_SMIL_AUDIO_REF, self.FINETUNEAS_REPLACE_SMIL_AUDIOREF, "audioref = \"%s\";" ), ( gc.PPN_TASK_OS_FILE_SMIL_PAGE_REF, self.FINETUNEAS_REPLACE_SMIL_PAGEREF, "pageref = \"%s\";" ), ]: if key in parameters: template = template.replace( placeholder, replacement % parameters[key] ) with io.open(output_file_path, "w", encoding="utf-8") as file_obj: file_obj.write(template)
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/syncmap/__init__.py#L309-L368
train
227,111
readbeyond/aeneas
aeneas/mfcc.py
MFCC._create_dct_matrix
def _create_dct_matrix(self): """ Create the not-quite-DCT matrix as used by Sphinx, and store it in ```self.s2dct```. """ self.s2dct = numpy.zeros((self.mfcc_size, self.filter_bank_size)) for i in range(0, self.mfcc_size): freq = numpy.pi * float(i) / self.filter_bank_size self.s2dct[i] = numpy.cos(freq * numpy.arange(0.5, 0.5 + self.filter_bank_size, 1.0, 'float64')) self.s2dct[:, 0] *= 0.5 self.s2dct = self.s2dct.transpose()
python
def _create_dct_matrix(self): """ Create the not-quite-DCT matrix as used by Sphinx, and store it in ```self.s2dct```. """ self.s2dct = numpy.zeros((self.mfcc_size, self.filter_bank_size)) for i in range(0, self.mfcc_size): freq = numpy.pi * float(i) / self.filter_bank_size self.s2dct[i] = numpy.cos(freq * numpy.arange(0.5, 0.5 + self.filter_bank_size, 1.0, 'float64')) self.s2dct[:, 0] *= 0.5 self.s2dct = self.s2dct.transpose()
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/mfcc.py#L104-L114
train
227,112
readbeyond/aeneas
aeneas/mfcc.py
MFCC._create_mel_filter_bank
def _create_mel_filter_bank(self): """ Create the Mel filter bank, and store it in ``self.filters``. Note that it is a function of the audio sample rate, so it cannot be created in the class initializer, but only later in :func:`aeneas.mfcc.MFCC.compute_from_data`. """ self.filters = numpy.zeros((1 + (self.fft_order // 2), self.filter_bank_size), 'd') dfreq = float(self.sample_rate) / self.fft_order nyquist_frequency = self.sample_rate / 2 if self.upper_frequency > nyquist_frequency: self.log_exc(u"Upper frequency %f exceeds Nyquist frequency %f" % (self.upper_frequency, nyquist_frequency), None, True, ValueError) melmax = MFCC._hz2mel(self.upper_frequency) melmin = MFCC._hz2mel(self.lower_frequency) dmelbw = (melmax - melmin) / (self.filter_bank_size + 1) filt_edge = MFCC._mel2hz(melmin + dmelbw * numpy.arange(self.filter_bank_size + 2, dtype='d')) # TODO can this code be written more numpy-style? # (the performance loss is negligible, it is just ugly to see) for whichfilt in range(0, self.filter_bank_size): # int() casts to native int instead of working with numpy.float64 leftfr = int(round(filt_edge[whichfilt] / dfreq)) centerfr = int(round(filt_edge[whichfilt + 1] / dfreq)) rightfr = int(round(filt_edge[whichfilt + 2] / dfreq)) fwidth = (rightfr - leftfr) * dfreq height = 2.0 / fwidth if centerfr != leftfr: leftslope = height / (centerfr - leftfr) else: leftslope = 0 freq = leftfr + 1 while freq < centerfr: self.filters[freq, whichfilt] = (freq - leftfr) * leftslope freq = freq + 1 # the next if should always be true! if freq == centerfr: self.filters[freq, whichfilt] = height freq = freq + 1 if centerfr != rightfr: rightslope = height / (centerfr - rightfr) while freq < rightfr: self.filters[freq, whichfilt] = (freq - rightfr) * rightslope freq = freq + 1
python
def _create_mel_filter_bank(self): """ Create the Mel filter bank, and store it in ``self.filters``. Note that it is a function of the audio sample rate, so it cannot be created in the class initializer, but only later in :func:`aeneas.mfcc.MFCC.compute_from_data`. """ self.filters = numpy.zeros((1 + (self.fft_order // 2), self.filter_bank_size), 'd') dfreq = float(self.sample_rate) / self.fft_order nyquist_frequency = self.sample_rate / 2 if self.upper_frequency > nyquist_frequency: self.log_exc(u"Upper frequency %f exceeds Nyquist frequency %f" % (self.upper_frequency, nyquist_frequency), None, True, ValueError) melmax = MFCC._hz2mel(self.upper_frequency) melmin = MFCC._hz2mel(self.lower_frequency) dmelbw = (melmax - melmin) / (self.filter_bank_size + 1) filt_edge = MFCC._mel2hz(melmin + dmelbw * numpy.arange(self.filter_bank_size + 2, dtype='d')) # TODO can this code be written more numpy-style? # (the performance loss is negligible, it is just ugly to see) for whichfilt in range(0, self.filter_bank_size): # int() casts to native int instead of working with numpy.float64 leftfr = int(round(filt_edge[whichfilt] / dfreq)) centerfr = int(round(filt_edge[whichfilt + 1] / dfreq)) rightfr = int(round(filt_edge[whichfilt + 2] / dfreq)) fwidth = (rightfr - leftfr) * dfreq height = 2.0 / fwidth if centerfr != leftfr: leftslope = height / (centerfr - leftfr) else: leftslope = 0 freq = leftfr + 1 while freq < centerfr: self.filters[freq, whichfilt] = (freq - leftfr) * leftslope freq = freq + 1 # the next if should always be true! if freq == centerfr: self.filters[freq, whichfilt] = height freq = freq + 1 if centerfr != rightfr: rightslope = height / (centerfr - rightfr) while freq < rightfr: self.filters[freq, whichfilt] = (freq - rightfr) * rightslope freq = freq + 1
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Create the Mel filter bank, and store it in ``self.filters``. Note that it is a function of the audio sample rate, so it cannot be created in the class initializer, but only later in :func:`aeneas.mfcc.MFCC.compute_from_data`.
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/mfcc.py#L116-L160
train
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readbeyond/aeneas
aeneas/mfcc.py
MFCC._pre_emphasis
def _pre_emphasis(self): """ Pre-emphasize the entire signal at once by self.emphasis_factor, overwriting ``self.data``. """ self.data = numpy.append(self.data[0], self.data[1:] - self.emphasis_factor * self.data[:-1])
python
def _pre_emphasis(self): """ Pre-emphasize the entire signal at once by self.emphasis_factor, overwriting ``self.data``. """ self.data = numpy.append(self.data[0], self.data[1:] - self.emphasis_factor * self.data[:-1])
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Pre-emphasize the entire signal at once by self.emphasis_factor, overwriting ``self.data``.
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/mfcc.py#L162-L167
train
227,114
readbeyond/aeneas
aeneas/mfcc.py
MFCC.compute_from_data
def compute_from_data(self, data, sample_rate): """ Compute MFCCs for the given audio data. The audio data must be a 1D :class:`numpy.ndarray`, that is, it must represent a monoaural (single channel) array of ``float64`` values in ``[-1.0, 1.0]``. :param data: the audio data :type data: :class:`numpy.ndarray` (1D) :param int sample_rate: the sample rate of the audio data, in samples/s (Hz) :raises: ValueError: if the data is not a 1D :class:`numpy.ndarray` (i.e., not mono), or if the data is empty :raises: ValueError: if the upper frequency defined in the ``rconf`` is larger than the Nyquist frequenct (i.e., half of ``sample_rate``) """ def _process_frame(self, frame): """ Process each frame, returning the log(power()) of it. """ # apply Hamming window frame *= self.hamming_window # compute RFFT fft = numpy.fft.rfft(frame, self.fft_order) # equivalent to power = fft.real * fft.real + fft.imag * fft.imag power = numpy.square(numpy.absolute(fft)) # # return the log(power()) of the transformed vector # v1 # COMMENTED logspec = numpy.log(numpy.dot(power, self.filters).clip(self.CUTOFF, numpy.inf)) # COMMENTED return numpy.dot(logspec, self.s2dct) / self.filter_bank_size # v2 return numpy.log(numpy.dot(power, self.filters).clip(self.CUTOFF, numpy.inf)) if len(data.shape) != 1: self.log_exc(u"The audio data must be a 1D numpy array (mono).", None, True, ValueError) if len(data) < 1: self.log_exc(u"The audio data must not be empty.", None, True, ValueError) self.data = data self.sample_rate = sample_rate # number of samples in the audio data_length = len(self.data) # frame length in number of samples frame_length = int(self.window_length * self.sample_rate) # frame length must be at least equal to the FFT order frame_length_padded = max(frame_length, self.fft_order) # frame shift in number of samples frame_shift = int(self.window_shift * self.sample_rate) # number of MFCC vectors (one for each frame) # this number includes the last shift, # where the data will be padded with zeros # if the remaining samples are less than frame_length_padded number_of_frames = int((1.0 * data_length) / frame_shift) # create Hamming window self.hamming_window = numpy.hamming(frame_length_padded) # build Mel filter bank self._create_mel_filter_bank() # pre-emphasize the entire audio data self._pre_emphasis() # allocate the MFCCs matrix # v1 # COMMENTED mfcc = numpy.zeros((number_of_frames, self.mfcc_size), 'float64') # v2 mfcc = numpy.zeros((number_of_frames, self.filter_bank_size), 'float64') # compute MFCCs one frame at a time for frame_index in range(number_of_frames): # COMMENTED print("Computing frame %d / %d" % (frame_index, number_of_frames)) # get the start and end indices for this frame, # do not overrun the data length frame_start = frame_index * frame_shift frame_end = min(frame_start + frame_length_padded, data_length) # frame is zero-padded if the remaining samples # are less than its length frame = numpy.zeros(frame_length_padded) frame[0:(frame_end - frame_start)] = self.data[frame_start:frame_end] # process the frame mfcc[frame_index] = _process_frame(self, frame) # v1 # COMMENTED return mfcc # v2 # return the dot product with the DCT matrix return numpy.dot(mfcc, self.s2dct) / self.filter_bank_size
python
def compute_from_data(self, data, sample_rate): """ Compute MFCCs for the given audio data. The audio data must be a 1D :class:`numpy.ndarray`, that is, it must represent a monoaural (single channel) array of ``float64`` values in ``[-1.0, 1.0]``. :param data: the audio data :type data: :class:`numpy.ndarray` (1D) :param int sample_rate: the sample rate of the audio data, in samples/s (Hz) :raises: ValueError: if the data is not a 1D :class:`numpy.ndarray` (i.e., not mono), or if the data is empty :raises: ValueError: if the upper frequency defined in the ``rconf`` is larger than the Nyquist frequenct (i.e., half of ``sample_rate``) """ def _process_frame(self, frame): """ Process each frame, returning the log(power()) of it. """ # apply Hamming window frame *= self.hamming_window # compute RFFT fft = numpy.fft.rfft(frame, self.fft_order) # equivalent to power = fft.real * fft.real + fft.imag * fft.imag power = numpy.square(numpy.absolute(fft)) # # return the log(power()) of the transformed vector # v1 # COMMENTED logspec = numpy.log(numpy.dot(power, self.filters).clip(self.CUTOFF, numpy.inf)) # COMMENTED return numpy.dot(logspec, self.s2dct) / self.filter_bank_size # v2 return numpy.log(numpy.dot(power, self.filters).clip(self.CUTOFF, numpy.inf)) if len(data.shape) != 1: self.log_exc(u"The audio data must be a 1D numpy array (mono).", None, True, ValueError) if len(data) < 1: self.log_exc(u"The audio data must not be empty.", None, True, ValueError) self.data = data self.sample_rate = sample_rate # number of samples in the audio data_length = len(self.data) # frame length in number of samples frame_length = int(self.window_length * self.sample_rate) # frame length must be at least equal to the FFT order frame_length_padded = max(frame_length, self.fft_order) # frame shift in number of samples frame_shift = int(self.window_shift * self.sample_rate) # number of MFCC vectors (one for each frame) # this number includes the last shift, # where the data will be padded with zeros # if the remaining samples are less than frame_length_padded number_of_frames = int((1.0 * data_length) / frame_shift) # create Hamming window self.hamming_window = numpy.hamming(frame_length_padded) # build Mel filter bank self._create_mel_filter_bank() # pre-emphasize the entire audio data self._pre_emphasis() # allocate the MFCCs matrix # v1 # COMMENTED mfcc = numpy.zeros((number_of_frames, self.mfcc_size), 'float64') # v2 mfcc = numpy.zeros((number_of_frames, self.filter_bank_size), 'float64') # compute MFCCs one frame at a time for frame_index in range(number_of_frames): # COMMENTED print("Computing frame %d / %d" % (frame_index, number_of_frames)) # get the start and end indices for this frame, # do not overrun the data length frame_start = frame_index * frame_shift frame_end = min(frame_start + frame_length_padded, data_length) # frame is zero-padded if the remaining samples # are less than its length frame = numpy.zeros(frame_length_padded) frame[0:(frame_end - frame_start)] = self.data[frame_start:frame_end] # process the frame mfcc[frame_index] = _process_frame(self, frame) # v1 # COMMENTED return mfcc # v2 # return the dot product with the DCT matrix return numpy.dot(mfcc, self.s2dct) / self.filter_bank_size
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/mfcc.py#L169-L265
train
227,115
readbeyond/aeneas
aeneas/wavfile.py
write
def write(filename, rate, data): """ Write a numpy array as a WAV file Parameters ---------- filename : string or open file handle Output wav file rate : int The sample rate (in samples/sec). data : ndarray A 1-D or 2-D numpy array of either integer or float data-type. Notes ----- * The file can be an open file or a filename. * Writes a simple uncompressed WAV file. * The bits-per-sample will be determined by the data-type. * To write multiple-channels, use a 2-D array of shape (Nsamples, Nchannels). """ if hasattr(filename, 'write'): fid = filename else: fid = open(filename, 'wb') try: dkind = data.dtype.kind if not (dkind == 'i' or dkind == 'f' or (dkind == 'u' and data.dtype.itemsize == 1)): raise ValueError("Unsupported data type '%s'" % data.dtype) fid.write(b'RIFF') fid.write(b'\x00\x00\x00\x00') fid.write(b'WAVE') # fmt chunk fid.write(b'fmt ') if dkind == 'f': comp = 3 else: comp = 1 if data.ndim == 1: noc = 1 else: noc = data.shape[1] bits = data.dtype.itemsize * 8 sbytes = rate * (bits // 8) * noc ba = noc * (bits // 8) fid.write(struct.pack('<ihHIIHH', 16, comp, noc, rate, sbytes, ba, bits)) # data chunk fid.write(b'data') fid.write(struct.pack('<i', data.nbytes)) if data.dtype.byteorder == '>' or (data.dtype.byteorder == '=' and sys.byteorder == 'big'): data = data.byteswap() _array_tofile(fid, data) # Determine file size and place it in correct # position at start of the file. size = fid.tell() fid.seek(4) fid.write(struct.pack('<i', size - 8)) finally: if not hasattr(filename, 'write'): fid.close() else: fid.seek(0)
python
def write(filename, rate, data): """ Write a numpy array as a WAV file Parameters ---------- filename : string or open file handle Output wav file rate : int The sample rate (in samples/sec). data : ndarray A 1-D or 2-D numpy array of either integer or float data-type. Notes ----- * The file can be an open file or a filename. * Writes a simple uncompressed WAV file. * The bits-per-sample will be determined by the data-type. * To write multiple-channels, use a 2-D array of shape (Nsamples, Nchannels). """ if hasattr(filename, 'write'): fid = filename else: fid = open(filename, 'wb') try: dkind = data.dtype.kind if not (dkind == 'i' or dkind == 'f' or (dkind == 'u' and data.dtype.itemsize == 1)): raise ValueError("Unsupported data type '%s'" % data.dtype) fid.write(b'RIFF') fid.write(b'\x00\x00\x00\x00') fid.write(b'WAVE') # fmt chunk fid.write(b'fmt ') if dkind == 'f': comp = 3 else: comp = 1 if data.ndim == 1: noc = 1 else: noc = data.shape[1] bits = data.dtype.itemsize * 8 sbytes = rate * (bits // 8) * noc ba = noc * (bits // 8) fid.write(struct.pack('<ihHIIHH', 16, comp, noc, rate, sbytes, ba, bits)) # data chunk fid.write(b'data') fid.write(struct.pack('<i', data.nbytes)) if data.dtype.byteorder == '>' or (data.dtype.byteorder == '=' and sys.byteorder == 'big'): data = data.byteswap() _array_tofile(fid, data) # Determine file size and place it in correct # position at start of the file. size = fid.tell() fid.seek(4) fid.write(struct.pack('<i', size - 8)) finally: if not hasattr(filename, 'write'): fid.close() else: fid.seek(0)
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/wavfile.py#L200-L270
train
227,116
readbeyond/aeneas
aeneas/globalfunctions.py
safe_print
def safe_print(msg): """ Safely print a given Unicode string to stdout, possibly replacing characters non-printable in the current stdout encoding. :param string msg: the message """ try: print(msg) except UnicodeEncodeError: try: # NOTE encoding and decoding so that in Python 3 no b"..." is printed encoded = msg.encode(sys.stdout.encoding, "replace") decoded = encoded.decode(sys.stdout.encoding, "replace") print(decoded) except (UnicodeDecodeError, UnicodeEncodeError): print(u"[ERRO] An unexpected error happened while printing to stdout.") print(u"[ERRO] Please check that your file/string encoding matches the shell encoding.") print(u"[ERRO] If possible, set your shell encoding to UTF-8 and convert any files with legacy encodings.")
python
def safe_print(msg): """ Safely print a given Unicode string to stdout, possibly replacing characters non-printable in the current stdout encoding. :param string msg: the message """ try: print(msg) except UnicodeEncodeError: try: # NOTE encoding and decoding so that in Python 3 no b"..." is printed encoded = msg.encode(sys.stdout.encoding, "replace") decoded = encoded.decode(sys.stdout.encoding, "replace") print(decoded) except (UnicodeDecodeError, UnicodeEncodeError): print(u"[ERRO] An unexpected error happened while printing to stdout.") print(u"[ERRO] Please check that your file/string encoding matches the shell encoding.") print(u"[ERRO] If possible, set your shell encoding to UTF-8 and convert any files with legacy encodings.")
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L65-L84
train
227,117
readbeyond/aeneas
aeneas/globalfunctions.py
print_error
def print_error(msg, color=True): """ Print an error message. :param string msg: the message :param bool color: if ``True``, print with POSIX color """ if color and is_posix(): safe_print(u"%s[ERRO] %s%s" % (ANSI_ERROR, msg, ANSI_END)) else: safe_print(u"[ERRO] %s" % (msg))
python
def print_error(msg, color=True): """ Print an error message. :param string msg: the message :param bool color: if ``True``, print with POSIX color """ if color and is_posix(): safe_print(u"%s[ERRO] %s%s" % (ANSI_ERROR, msg, ANSI_END)) else: safe_print(u"[ERRO] %s" % (msg))
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L87-L97
train
227,118
readbeyond/aeneas
aeneas/globalfunctions.py
print_success
def print_success(msg, color=True): """ Print a success message. :param string msg: the message :param bool color: if ``True``, print with POSIX color """ if color and is_posix(): safe_print(u"%s[INFO] %s%s" % (ANSI_OK, msg, ANSI_END)) else: safe_print(u"[INFO] %s" % (msg))
python
def print_success(msg, color=True): """ Print a success message. :param string msg: the message :param bool color: if ``True``, print with POSIX color """ if color and is_posix(): safe_print(u"%s[INFO] %s%s" % (ANSI_OK, msg, ANSI_END)) else: safe_print(u"[INFO] %s" % (msg))
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L110-L120
train
227,119
readbeyond/aeneas
aeneas/globalfunctions.py
print_warning
def print_warning(msg, color=True): """ Print a warning message. :param string msg: the message :param bool color: if ``True``, print with POSIX color """ if color and is_posix(): safe_print(u"%s[WARN] %s%s" % (ANSI_WARNING, msg, ANSI_END)) else: safe_print(u"[WARN] %s" % (msg))
python
def print_warning(msg, color=True): """ Print a warning message. :param string msg: the message :param bool color: if ``True``, print with POSIX color """ if color and is_posix(): safe_print(u"%s[WARN] %s%s" % (ANSI_WARNING, msg, ANSI_END)) else: safe_print(u"[WARN] %s" % (msg))
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L123-L133
train
227,120
readbeyond/aeneas
aeneas/globalfunctions.py
file_extension
def file_extension(path): """ Return the file extension. Examples: :: /foo/bar.baz => baz None => None :param string path: the file path :rtype: string """ if path is None: return None ext = os.path.splitext(os.path.basename(path))[1] if ext.startswith("."): ext = ext[1:] return ext
python
def file_extension(path): """ Return the file extension. Examples: :: /foo/bar.baz => baz None => None :param string path: the file path :rtype: string """ if path is None: return None ext = os.path.splitext(os.path.basename(path))[1] if ext.startswith("."): ext = ext[1:] return ext
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Return the file extension. Examples: :: /foo/bar.baz => baz None => None :param string path: the file path :rtype: string
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L196-L213
train
227,121
readbeyond/aeneas
aeneas/globalfunctions.py
mimetype_from_path
def mimetype_from_path(path): """ Return a mimetype from the file extension. :param string path: the file path :rtype: string """ extension = file_extension(path) if extension is not None: extension = extension.lower() if extension in gc.MIMETYPE_MAP: return gc.MIMETYPE_MAP[extension] return None
python
def mimetype_from_path(path): """ Return a mimetype from the file extension. :param string path: the file path :rtype: string """ extension = file_extension(path) if extension is not None: extension = extension.lower() if extension in gc.MIMETYPE_MAP: return gc.MIMETYPE_MAP[extension] return None
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L216-L228
train
227,122
readbeyond/aeneas
aeneas/globalfunctions.py
file_name_without_extension
def file_name_without_extension(path): """ Return the file name without extension. Examples: :: /foo/bar.baz => bar /foo/bar => bar None => None :param string path: the file path :rtype: string """ if path is None: return None return os.path.splitext(os.path.basename(path))[0]
python
def file_name_without_extension(path): """ Return the file name without extension. Examples: :: /foo/bar.baz => bar /foo/bar => bar None => None :param string path: the file path :rtype: string """ if path is None: return None return os.path.splitext(os.path.basename(path))[0]
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Return the file name without extension. Examples: :: /foo/bar.baz => bar /foo/bar => bar None => None :param string path: the file path :rtype: string
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L231-L246
train
227,123
readbeyond/aeneas
aeneas/globalfunctions.py
safe_float
def safe_float(string, default=None): """ Safely parse a string into a float. On error return the ``default`` value. :param string string: string value to be converted :param float default: default value to be used in case of failure :rtype: float """ value = default try: value = float(string) except TypeError: pass except ValueError: pass return value
python
def safe_float(string, default=None): """ Safely parse a string into a float. On error return the ``default`` value. :param string string: string value to be converted :param float default: default value to be used in case of failure :rtype: float """ value = default try: value = float(string) except TypeError: pass except ValueError: pass return value
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L272-L289
train
227,124
readbeyond/aeneas
aeneas/globalfunctions.py
safe_int
def safe_int(string, default=None): """ Safely parse a string into an int. On error return the ``default`` value. :param string string: string value to be converted :param int default: default value to be used in case of failure :rtype: int """ value = safe_float(string, default) if value is not None: value = int(value) return value
python
def safe_int(string, default=None): """ Safely parse a string into an int. On error return the ``default`` value. :param string string: string value to be converted :param int default: default value to be used in case of failure :rtype: int """ value = safe_float(string, default) if value is not None: value = int(value) return value
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L292-L305
train
227,125
readbeyond/aeneas
aeneas/globalfunctions.py
safe_get
def safe_get(dictionary, key, default_value, can_return_none=True): """ Safely perform a dictionary get, returning the default value if the key is not found. :param dict dictionary: the dictionary :param string key: the key :param variant default_value: the default value to be returned :param bool can_return_none: if ``True``, the function can return ``None``; otherwise, return ``default_value`` even if the dictionary lookup succeeded :rtype: variant """ return_value = default_value try: return_value = dictionary[key] if (return_value is None) and (not can_return_none): return_value = default_value except (KeyError, TypeError): # KeyError if key is not present in dictionary # TypeError if dictionary is None pass return return_value
python
def safe_get(dictionary, key, default_value, can_return_none=True): """ Safely perform a dictionary get, returning the default value if the key is not found. :param dict dictionary: the dictionary :param string key: the key :param variant default_value: the default value to be returned :param bool can_return_none: if ``True``, the function can return ``None``; otherwise, return ``default_value`` even if the dictionary lookup succeeded :rtype: variant """ return_value = default_value try: return_value = dictionary[key] if (return_value is None) and (not can_return_none): return_value = default_value except (KeyError, TypeError): # KeyError if key is not present in dictionary # TypeError if dictionary is None pass return return_value
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Safely perform a dictionary get, returning the default value if the key is not found. :param dict dictionary: the dictionary :param string key: the key :param variant default_value: the default value to be returned :param bool can_return_none: if ``True``, the function can return ``None``; otherwise, return ``default_value`` even if the dictionary lookup succeeded :rtype: variant
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L308-L330
train
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readbeyond/aeneas
aeneas/globalfunctions.py
norm_join
def norm_join(prefix, suffix): """ Join ``prefix`` and ``suffix`` paths and return the resulting path, normalized. :param string prefix: the prefix path :param string suffix: the suffix path :rtype: string """ if (prefix is None) and (suffix is None): return "." if prefix is None: return os.path.normpath(suffix) if suffix is None: return os.path.normpath(prefix) return os.path.normpath(os.path.join(prefix, suffix))
python
def norm_join(prefix, suffix): """ Join ``prefix`` and ``suffix`` paths and return the resulting path, normalized. :param string prefix: the prefix path :param string suffix: the suffix path :rtype: string """ if (prefix is None) and (suffix is None): return "." if prefix is None: return os.path.normpath(suffix) if suffix is None: return os.path.normpath(prefix) return os.path.normpath(os.path.join(prefix, suffix))
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Join ``prefix`` and ``suffix`` paths and return the resulting path, normalized. :param string prefix: the prefix path :param string suffix: the suffix path :rtype: string
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L333-L348
train
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readbeyond/aeneas
aeneas/globalfunctions.py
copytree
def copytree(source_directory, destination_directory, ignore=None): """ Recursively copy the contents of a source directory into a destination directory. Both directories must exist. This function does not copy the root directory ``source_directory`` into ``destination_directory``. Since ``shutil.copytree(src, dst)`` requires ``dst`` not to exist, we cannot use for our purposes. Code adapted from http://stackoverflow.com/a/12686557 :param string source_directory: the source directory, already existing :param string destination_directory: the destination directory, already existing """ if os.path.isdir(source_directory): if not os.path.isdir(destination_directory): os.makedirs(destination_directory) files = os.listdir(source_directory) if ignore is not None: ignored = ignore(source_directory, files) else: ignored = set() for f in files: if f not in ignored: copytree( os.path.join(source_directory, f), os.path.join(destination_directory, f), ignore ) else: shutil.copyfile(source_directory, destination_directory)
python
def copytree(source_directory, destination_directory, ignore=None): """ Recursively copy the contents of a source directory into a destination directory. Both directories must exist. This function does not copy the root directory ``source_directory`` into ``destination_directory``. Since ``shutil.copytree(src, dst)`` requires ``dst`` not to exist, we cannot use for our purposes. Code adapted from http://stackoverflow.com/a/12686557 :param string source_directory: the source directory, already existing :param string destination_directory: the destination directory, already existing """ if os.path.isdir(source_directory): if not os.path.isdir(destination_directory): os.makedirs(destination_directory) files = os.listdir(source_directory) if ignore is not None: ignored = ignore(source_directory, files) else: ignored = set() for f in files: if f not in ignored: copytree( os.path.join(source_directory, f), os.path.join(destination_directory, f), ignore ) else: shutil.copyfile(source_directory, destination_directory)
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L501-L534
train
227,128
readbeyond/aeneas
aeneas/globalfunctions.py
ensure_parent_directory
def ensure_parent_directory(path, ensure_parent=True): """ Ensures the parent directory exists. :param string path: the path of the file :param bool ensure_parent: if ``True``, ensure the parent directory of ``path`` exists; if ``False``, ensure ``path`` exists :raises: OSError: if the path cannot be created """ parent_directory = os.path.abspath(path) if ensure_parent: parent_directory = os.path.dirname(parent_directory) if not os.path.exists(parent_directory): try: os.makedirs(parent_directory) except (IOError, OSError): raise OSError(u"Directory '%s' cannot be created" % parent_directory)
python
def ensure_parent_directory(path, ensure_parent=True): """ Ensures the parent directory exists. :param string path: the path of the file :param bool ensure_parent: if ``True``, ensure the parent directory of ``path`` exists; if ``False``, ensure ``path`` exists :raises: OSError: if the path cannot be created """ parent_directory = os.path.abspath(path) if ensure_parent: parent_directory = os.path.dirname(parent_directory) if not os.path.exists(parent_directory): try: os.makedirs(parent_directory) except (IOError, OSError): raise OSError(u"Directory '%s' cannot be created" % parent_directory)
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L537-L553
train
227,129
readbeyond/aeneas
aeneas/globalfunctions.py
can_run_c_extension
def can_run_c_extension(name=None): """ Determine whether the given Python C extension loads correctly. If ``name`` is ``None``, tests all Python C extensions, and return ``True`` if and only if all load correctly. :param string name: the name of the Python C extension to test :rtype: bool """ def can_run_cdtw(): """ Python C extension for computing DTW """ try: import aeneas.cdtw.cdtw return True except ImportError: return False def can_run_cmfcc(): """ Python C extension for computing MFCC """ try: import aeneas.cmfcc.cmfcc return True except ImportError: return False def can_run_cew(): """ Python C extension for synthesizing with eSpeak """ try: import aeneas.cew.cew return True except ImportError: return False def can_run_cfw(): """ Python C extension for synthesizing with Festival """ try: import aeneas.cfw.cfw return True except ImportError: return False if name == "cdtw": return can_run_cdtw() elif name == "cmfcc": return can_run_cmfcc() elif name == "cew": return can_run_cew() elif name == "cfw": return can_run_cfw() else: # NOTE cfw is still experimental! return can_run_cdtw() and can_run_cmfcc() and can_run_cew()
python
def can_run_c_extension(name=None): """ Determine whether the given Python C extension loads correctly. If ``name`` is ``None``, tests all Python C extensions, and return ``True`` if and only if all load correctly. :param string name: the name of the Python C extension to test :rtype: bool """ def can_run_cdtw(): """ Python C extension for computing DTW """ try: import aeneas.cdtw.cdtw return True except ImportError: return False def can_run_cmfcc(): """ Python C extension for computing MFCC """ try: import aeneas.cmfcc.cmfcc return True except ImportError: return False def can_run_cew(): """ Python C extension for synthesizing with eSpeak """ try: import aeneas.cew.cew return True except ImportError: return False def can_run_cfw(): """ Python C extension for synthesizing with Festival """ try: import aeneas.cfw.cfw return True except ImportError: return False if name == "cdtw": return can_run_cdtw() elif name == "cmfcc": return can_run_cmfcc() elif name == "cew": return can_run_cew() elif name == "cfw": return can_run_cfw() else: # NOTE cfw is still experimental! return can_run_cdtw() and can_run_cmfcc() and can_run_cew()
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L805-L857
train
227,130
readbeyond/aeneas
aeneas/globalfunctions.py
run_c_extension_with_fallback
def run_c_extension_with_fallback( log_function, extension, c_function, py_function, args, rconf ): """ Run a function calling a C extension, falling back to a pure Python function if the former does not succeed. :param function log_function: a logger function :param string extension: the name of the extension :param function c_function: the (Python) function calling the C extension :param function py_function: the (Python) function providing the fallback :param rconf: the runtime configuration :type rconf: :class:`aeneas.runtimeconfiguration.RuntimeConfiguration` :rtype: depends on the extension being called :raises: RuntimeError: if both the C extension and the pure Python code did not succeed. .. versionadded:: 1.4.0 """ computed = False if not rconf[u"c_extensions"]: log_function(u"C extensions disabled") elif extension not in rconf: log_function([u"C extension '%s' not recognized", extension]) elif not rconf[extension]: log_function([u"C extension '%s' disabled", extension]) else: log_function([u"C extension '%s' enabled", extension]) if c_function is None: log_function(u"C function is None") elif can_run_c_extension(extension): log_function([u"C extension '%s' enabled and it can be loaded", extension]) computed, result = c_function(*args) else: log_function([u"C extension '%s' enabled but it cannot be loaded", extension]) if not computed: if py_function is None: log_function(u"Python function is None") else: log_function(u"Running the pure Python code") computed, result = py_function(*args) if not computed: raise RuntimeError(u"Both the C extension and the pure Python code failed. (Wrong arguments? Input too big?)") return result
python
def run_c_extension_with_fallback( log_function, extension, c_function, py_function, args, rconf ): """ Run a function calling a C extension, falling back to a pure Python function if the former does not succeed. :param function log_function: a logger function :param string extension: the name of the extension :param function c_function: the (Python) function calling the C extension :param function py_function: the (Python) function providing the fallback :param rconf: the runtime configuration :type rconf: :class:`aeneas.runtimeconfiguration.RuntimeConfiguration` :rtype: depends on the extension being called :raises: RuntimeError: if both the C extension and the pure Python code did not succeed. .. versionadded:: 1.4.0 """ computed = False if not rconf[u"c_extensions"]: log_function(u"C extensions disabled") elif extension not in rconf: log_function([u"C extension '%s' not recognized", extension]) elif not rconf[extension]: log_function([u"C extension '%s' disabled", extension]) else: log_function([u"C extension '%s' enabled", extension]) if c_function is None: log_function(u"C function is None") elif can_run_c_extension(extension): log_function([u"C extension '%s' enabled and it can be loaded", extension]) computed, result = c_function(*args) else: log_function([u"C extension '%s' enabled but it cannot be loaded", extension]) if not computed: if py_function is None: log_function(u"Python function is None") else: log_function(u"Running the pure Python code") computed, result = py_function(*args) if not computed: raise RuntimeError(u"Both the C extension and the pure Python code failed. (Wrong arguments? Input too big?)") return result
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L860-L908
train
227,131
readbeyond/aeneas
aeneas/globalfunctions.py
file_can_be_read
def file_can_be_read(path): """ Return ``True`` if the file at the given ``path`` can be read. :param string path: the file path :rtype: bool .. versionadded:: 1.4.0 """ if path is None: return False try: with io.open(path, "rb") as test_file: pass return True except (IOError, OSError): pass return False
python
def file_can_be_read(path): """ Return ``True`` if the file at the given ``path`` can be read. :param string path: the file path :rtype: bool .. versionadded:: 1.4.0 """ if path is None: return False try: with io.open(path, "rb") as test_file: pass return True except (IOError, OSError): pass return False
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Return ``True`` if the file at the given ``path`` can be read. :param string path: the file path :rtype: bool .. versionadded:: 1.4.0
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L911-L928
train
227,132
readbeyond/aeneas
aeneas/globalfunctions.py
file_can_be_written
def file_can_be_written(path): """ Return ``True`` if a file can be written at the given ``path``. :param string path: the file path :rtype: bool .. warning:: This function will attempt to open the given ``path`` in write mode, possibly destroying the file previously existing there. .. versionadded:: 1.4.0 """ if path is None: return False try: with io.open(path, "wb") as test_file: pass delete_file(None, path) return True except (IOError, OSError): pass return False
python
def file_can_be_written(path): """ Return ``True`` if a file can be written at the given ``path``. :param string path: the file path :rtype: bool .. warning:: This function will attempt to open the given ``path`` in write mode, possibly destroying the file previously existing there. .. versionadded:: 1.4.0 """ if path is None: return False try: with io.open(path, "wb") as test_file: pass delete_file(None, path) return True except (IOError, OSError): pass return False
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Return ``True`` if a file can be written at the given ``path``. :param string path: the file path :rtype: bool .. warning:: This function will attempt to open the given ``path`` in write mode, possibly destroying the file previously existing there. .. versionadded:: 1.4.0
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L931-L952
train
227,133
readbeyond/aeneas
aeneas/globalfunctions.py
read_file_bytes
def read_file_bytes(input_file_path): """ Read the file at the given file path and return its contents as a byte string, or ``None`` if an error occurred. :param string input_file_path: the file path :rtype: bytes """ contents = None try: with io.open(input_file_path, "rb") as input_file: contents = input_file.read() except: pass return contents
python
def read_file_bytes(input_file_path): """ Read the file at the given file path and return its contents as a byte string, or ``None`` if an error occurred. :param string input_file_path: the file path :rtype: bytes """ contents = None try: with io.open(input_file_path, "rb") as input_file: contents = input_file.read() except: pass return contents
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Read the file at the given file path and return its contents as a byte string, or ``None`` if an error occurred. :param string input_file_path: the file path :rtype: bytes
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L1101-L1116
train
227,134
readbeyond/aeneas
aeneas/globalfunctions.py
human_readable_number
def human_readable_number(number, suffix=""): """ Format the given number into a human-readable string. Code adapted from http://stackoverflow.com/a/1094933 :param variant number: the number (int or float) :param string suffix: the unit of the number :rtype: string """ for unit in ["", "K", "M", "G", "T", "P", "E", "Z"]: if abs(number) < 1024.0: return "%3.1f%s%s" % (number, unit, suffix) number /= 1024.0 return "%.1f%s%s" % (number, "Y", suffix)
python
def human_readable_number(number, suffix=""): """ Format the given number into a human-readable string. Code adapted from http://stackoverflow.com/a/1094933 :param variant number: the number (int or float) :param string suffix: the unit of the number :rtype: string """ for unit in ["", "K", "M", "G", "T", "P", "E", "Z"]: if abs(number) < 1024.0: return "%3.1f%s%s" % (number, unit, suffix) number /= 1024.0 return "%.1f%s%s" % (number, "Y", suffix)
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Format the given number into a human-readable string. Code adapted from http://stackoverflow.com/a/1094933 :param variant number: the number (int or float) :param string suffix: the unit of the number :rtype: string
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L1119-L1133
train
227,135
readbeyond/aeneas
aeneas/globalfunctions.py
safe_unichr
def safe_unichr(codepoint): """ Safely return a Unicode string of length one, containing the Unicode character with given codepoint. :param int codepoint: the codepoint :rtype: string """ if is_py2_narrow_build(): return ("\\U%08x" % codepoint).decode("unicode-escape") elif PY2: return unichr(codepoint) return chr(codepoint)
python
def safe_unichr(codepoint): """ Safely return a Unicode string of length one, containing the Unicode character with given codepoint. :param int codepoint: the codepoint :rtype: string """ if is_py2_narrow_build(): return ("\\U%08x" % codepoint).decode("unicode-escape") elif PY2: return unichr(codepoint) return chr(codepoint)
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L1192-L1204
train
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readbeyond/aeneas
aeneas/globalfunctions.py
safe_unicode_stdin
def safe_unicode_stdin(string): """ Safely convert the given string to a Unicode string, decoding using ``sys.stdin.encoding`` if needed. If running from a frozen binary, ``utf-8`` encoding is assumed. :param variant string: the byte string or Unicode string to convert :rtype: string """ if string is None: return None if is_bytes(string): if FROZEN: return string.decode("utf-8") try: return string.decode(sys.stdin.encoding) except UnicodeDecodeError: return string.decode(sys.stdin.encoding, "replace") except: return string.decode("utf-8") return string
python
def safe_unicode_stdin(string): """ Safely convert the given string to a Unicode string, decoding using ``sys.stdin.encoding`` if needed. If running from a frozen binary, ``utf-8`` encoding is assumed. :param variant string: the byte string or Unicode string to convert :rtype: string """ if string is None: return None if is_bytes(string): if FROZEN: return string.decode("utf-8") try: return string.decode(sys.stdin.encoding) except UnicodeDecodeError: return string.decode(sys.stdin.encoding, "replace") except: return string.decode("utf-8") return string
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/globalfunctions.py#L1235-L1256
train
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readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
TTSCache.get
def get(self, fragment_info): """ Get the value associated with the given key. :param fragment_info: the text key :type fragment_info: tuple of str ``(language, text)`` :raises: KeyError if the key is not present in the cache """ if not self.is_cached(fragment_info): raise KeyError(u"Attempt to get text not cached") return self.cache[fragment_info]
python
def get(self, fragment_info): """ Get the value associated with the given key. :param fragment_info: the text key :type fragment_info: tuple of str ``(language, text)`` :raises: KeyError if the key is not present in the cache """ if not self.is_cached(fragment_info): raise KeyError(u"Attempt to get text not cached") return self.cache[fragment_info]
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L116-L126
train
227,138
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
TTSCache.clear
def clear(self): """ Clear the cache and remove all the files from disk. """ self.log(u"Clearing cache...") for file_handler, file_info in self.cache.values(): self.log([u" Removing file '%s'", file_info]) gf.delete_file(file_handler, file_info) self._initialize_cache() self.log(u"Clearing cache... done")
python
def clear(self): """ Clear the cache and remove all the files from disk. """ self.log(u"Clearing cache...") for file_handler, file_info in self.cache.values(): self.log([u" Removing file '%s'", file_info]) gf.delete_file(file_handler, file_info) self._initialize_cache() self.log(u"Clearing cache... done")
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Clear the cache and remove all the files from disk.
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L128-L137
train
227,139
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
BaseTTSWrapper._language_to_voice_code
def _language_to_voice_code(self, language): """ Translate a language value to a voice code. If you want to mock support for a language by using a voice for a similar language, please add it to the ``LANGUAGE_TO_VOICE_CODE`` dictionary. :param language: the requested language :type language: :class:`~aeneas.language.Language` :rtype: string """ voice_code = self.rconf[RuntimeConfiguration.TTS_VOICE_CODE] if voice_code is None: try: voice_code = self.LANGUAGE_TO_VOICE_CODE[language] except KeyError as exc: self.log_exc(u"Language code '%s' not found in LANGUAGE_TO_VOICE_CODE" % (language), exc, False, None) self.log_warn(u"Using the language code as the voice code") voice_code = language else: self.log(u"TTS voice override in rconf") self.log([u"Language to voice code: '%s' => '%s'", language, voice_code]) return voice_code
python
def _language_to_voice_code(self, language): """ Translate a language value to a voice code. If you want to mock support for a language by using a voice for a similar language, please add it to the ``LANGUAGE_TO_VOICE_CODE`` dictionary. :param language: the requested language :type language: :class:`~aeneas.language.Language` :rtype: string """ voice_code = self.rconf[RuntimeConfiguration.TTS_VOICE_CODE] if voice_code is None: try: voice_code = self.LANGUAGE_TO_VOICE_CODE[language] except KeyError as exc: self.log_exc(u"Language code '%s' not found in LANGUAGE_TO_VOICE_CODE" % (language), exc, False, None) self.log_warn(u"Using the language code as the voice code") voice_code = language else: self.log(u"TTS voice override in rconf") self.log([u"Language to voice code: '%s' => '%s'", language, voice_code]) return voice_code
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L299-L322
train
227,140
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
BaseTTSWrapper.clear_cache
def clear_cache(self): """ Clear the TTS cache, removing all cache files from disk. .. versionadded:: 1.6.0 """ if self.use_cache: self.log(u"Requested to clear TTS cache") self.cache.clear()
python
def clear_cache(self): """ Clear the TTS cache, removing all cache files from disk. .. versionadded:: 1.6.0 """ if self.use_cache: self.log(u"Requested to clear TTS cache") self.cache.clear()
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Clear the TTS cache, removing all cache files from disk. .. versionadded:: 1.6.0
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L331-L339
train
227,141
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
BaseTTSWrapper.set_subprocess_arguments
def set_subprocess_arguments(self, subprocess_arguments): """ Set the list of arguments that the wrapper will pass to ``subprocess``. Placeholders ``CLI_PARAMETER_*`` can be used, and they will be replaced by actual values in the ``_synthesize_multiple_subprocess()`` and ``_synthesize_single_subprocess()`` built-in functions. Literal parameters will be passed unchanged. The list should start with the path to the TTS engine. This function should be called in the constructor of concrete subclasses. :param list subprocess_arguments: the list of arguments to be passed to the TTS engine via subprocess """ # NOTE this is a method because we might need to access self.rconf, # so we cannot specify the list of arguments as a class field self.subprocess_arguments = subprocess_arguments self.log([u"Subprocess arguments: %s", subprocess_arguments])
python
def set_subprocess_arguments(self, subprocess_arguments): """ Set the list of arguments that the wrapper will pass to ``subprocess``. Placeholders ``CLI_PARAMETER_*`` can be used, and they will be replaced by actual values in the ``_synthesize_multiple_subprocess()`` and ``_synthesize_single_subprocess()`` built-in functions. Literal parameters will be passed unchanged. The list should start with the path to the TTS engine. This function should be called in the constructor of concrete subclasses. :param list subprocess_arguments: the list of arguments to be passed to the TTS engine via subprocess """ # NOTE this is a method because we might need to access self.rconf, # so we cannot specify the list of arguments as a class field self.subprocess_arguments = subprocess_arguments self.log([u"Subprocess arguments: %s", subprocess_arguments])
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Set the list of arguments that the wrapper will pass to ``subprocess``. Placeholders ``CLI_PARAMETER_*`` can be used, and they will be replaced by actual values in the ``_synthesize_multiple_subprocess()`` and ``_synthesize_single_subprocess()`` built-in functions. Literal parameters will be passed unchanged. The list should start with the path to the TTS engine. This function should be called in the constructor of concrete subclasses. :param list subprocess_arguments: the list of arguments to be passed to the TTS engine via subprocess
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L341-L361
train
227,142
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
BaseTTSWrapper.synthesize_multiple
def synthesize_multiple(self, text_file, output_file_path, quit_after=None, backwards=False): """ Synthesize the text contained in the given fragment list into a WAVE file. Return a tuple (anchors, total_time, num_chars). Concrete subclasses must implement at least one of the following private functions: 1. ``_synthesize_multiple_python()`` 2. ``_synthesize_multiple_c_extension()`` 3. ``_synthesize_multiple_subprocess()`` :param text_file: the text file to be synthesized :type text_file: :class:`~aeneas.textfile.TextFile` :param string output_file_path: the path to the output audio file :param quit_after: stop synthesizing as soon as reaching this many seconds :type quit_after: :class:`~aeneas.exacttiming.TimeValue` :param bool backwards: if > 0, synthesize from the end of the text file :rtype: tuple (anchors, total_time, num_chars) :raises: TypeError: if ``text_file`` is ``None`` or one of the text fragments is not a Unicode string :raises: ValueError: if ``self.rconf[RuntimeConfiguration.ALLOW_UNLISTED_LANGUAGES]`` is ``False`` and a fragment has a language code not supported by the TTS engine, or if ``text_file`` has no fragments or all its fragments are empty :raises: OSError: if output file cannot be written to ``output_file_path`` :raises: RuntimeError: if both the C extension and the pure Python code did not succeed. """ if text_file is None: self.log_exc(u"text_file is None", None, True, TypeError) if len(text_file) < 1: self.log_exc(u"The text file has no fragments", None, True, ValueError) if text_file.chars == 0: self.log_exc(u"All fragments in the text file are empty", None, True, ValueError) if not self.rconf[RuntimeConfiguration.ALLOW_UNLISTED_LANGUAGES]: for fragment in text_file.fragments: if fragment.language not in self.LANGUAGE_TO_VOICE_CODE: self.log_exc(u"Language '%s' is not supported by the selected TTS engine" % (fragment.language), None, True, ValueError) for fragment in text_file.fragments: for line in fragment.lines: if not gf.is_unicode(line): self.log_exc(u"The text file contain a line which is not a Unicode string", None, True, TypeError) # log parameters if quit_after is not None: self.log([u"Quit after reaching %.3f", quit_after]) if backwards: self.log(u"Synthesizing backwards") # check that output_file_path can be written if not gf.file_can_be_written(output_file_path): self.log_exc(u"Cannot write to output file '%s'" % (output_file_path), None, True, OSError) # first, call Python function _synthesize_multiple_python() if available if self.HAS_PYTHON_CALL: self.log(u"Calling TTS engine via Python") try: computed, result = self._synthesize_multiple_python(text_file, output_file_path, quit_after, backwards) if computed: self.log(u"The _synthesize_multiple_python call was successful, returning anchors") return result else: self.log(u"The _synthesize_multiple_python call failed") except Exception as exc: self.log_exc(u"An unexpected error occurred while calling _synthesize_multiple_python", exc, False, None) # call _synthesize_multiple_c_extension() or _synthesize_multiple_subprocess() self.log(u"Calling TTS engine via C extension or subprocess") c_extension_function = self._synthesize_multiple_c_extension if self.HAS_C_EXTENSION_CALL else None subprocess_function = self._synthesize_multiple_subprocess if self.HAS_SUBPROCESS_CALL else None return gf.run_c_extension_with_fallback( self.log, self.C_EXTENSION_NAME, c_extension_function, subprocess_function, (text_file, output_file_path, quit_after, backwards), rconf=self.rconf )
python
def synthesize_multiple(self, text_file, output_file_path, quit_after=None, backwards=False): """ Synthesize the text contained in the given fragment list into a WAVE file. Return a tuple (anchors, total_time, num_chars). Concrete subclasses must implement at least one of the following private functions: 1. ``_synthesize_multiple_python()`` 2. ``_synthesize_multiple_c_extension()`` 3. ``_synthesize_multiple_subprocess()`` :param text_file: the text file to be synthesized :type text_file: :class:`~aeneas.textfile.TextFile` :param string output_file_path: the path to the output audio file :param quit_after: stop synthesizing as soon as reaching this many seconds :type quit_after: :class:`~aeneas.exacttiming.TimeValue` :param bool backwards: if > 0, synthesize from the end of the text file :rtype: tuple (anchors, total_time, num_chars) :raises: TypeError: if ``text_file`` is ``None`` or one of the text fragments is not a Unicode string :raises: ValueError: if ``self.rconf[RuntimeConfiguration.ALLOW_UNLISTED_LANGUAGES]`` is ``False`` and a fragment has a language code not supported by the TTS engine, or if ``text_file`` has no fragments or all its fragments are empty :raises: OSError: if output file cannot be written to ``output_file_path`` :raises: RuntimeError: if both the C extension and the pure Python code did not succeed. """ if text_file is None: self.log_exc(u"text_file is None", None, True, TypeError) if len(text_file) < 1: self.log_exc(u"The text file has no fragments", None, True, ValueError) if text_file.chars == 0: self.log_exc(u"All fragments in the text file are empty", None, True, ValueError) if not self.rconf[RuntimeConfiguration.ALLOW_UNLISTED_LANGUAGES]: for fragment in text_file.fragments: if fragment.language not in self.LANGUAGE_TO_VOICE_CODE: self.log_exc(u"Language '%s' is not supported by the selected TTS engine" % (fragment.language), None, True, ValueError) for fragment in text_file.fragments: for line in fragment.lines: if not gf.is_unicode(line): self.log_exc(u"The text file contain a line which is not a Unicode string", None, True, TypeError) # log parameters if quit_after is not None: self.log([u"Quit after reaching %.3f", quit_after]) if backwards: self.log(u"Synthesizing backwards") # check that output_file_path can be written if not gf.file_can_be_written(output_file_path): self.log_exc(u"Cannot write to output file '%s'" % (output_file_path), None, True, OSError) # first, call Python function _synthesize_multiple_python() if available if self.HAS_PYTHON_CALL: self.log(u"Calling TTS engine via Python") try: computed, result = self._synthesize_multiple_python(text_file, output_file_path, quit_after, backwards) if computed: self.log(u"The _synthesize_multiple_python call was successful, returning anchors") return result else: self.log(u"The _synthesize_multiple_python call failed") except Exception as exc: self.log_exc(u"An unexpected error occurred while calling _synthesize_multiple_python", exc, False, None) # call _synthesize_multiple_c_extension() or _synthesize_multiple_subprocess() self.log(u"Calling TTS engine via C extension or subprocess") c_extension_function = self._synthesize_multiple_c_extension if self.HAS_C_EXTENSION_CALL else None subprocess_function = self._synthesize_multiple_subprocess if self.HAS_SUBPROCESS_CALL else None return gf.run_c_extension_with_fallback( self.log, self.C_EXTENSION_NAME, c_extension_function, subprocess_function, (text_file, output_file_path, quit_after, backwards), rconf=self.rconf )
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Synthesize the text contained in the given fragment list into a WAVE file. Return a tuple (anchors, total_time, num_chars). Concrete subclasses must implement at least one of the following private functions: 1. ``_synthesize_multiple_python()`` 2. ``_synthesize_multiple_c_extension()`` 3. ``_synthesize_multiple_subprocess()`` :param text_file: the text file to be synthesized :type text_file: :class:`~aeneas.textfile.TextFile` :param string output_file_path: the path to the output audio file :param quit_after: stop synthesizing as soon as reaching this many seconds :type quit_after: :class:`~aeneas.exacttiming.TimeValue` :param bool backwards: if > 0, synthesize from the end of the text file :rtype: tuple (anchors, total_time, num_chars) :raises: TypeError: if ``text_file`` is ``None`` or one of the text fragments is not a Unicode string :raises: ValueError: if ``self.rconf[RuntimeConfiguration.ALLOW_UNLISTED_LANGUAGES]`` is ``False`` and a fragment has a language code not supported by the TTS engine, or if ``text_file`` has no fragments or all its fragments are empty :raises: OSError: if output file cannot be written to ``output_file_path`` :raises: RuntimeError: if both the C extension and the pure Python code did not succeed.
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L363-L443
train
227,143
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
BaseTTSWrapper._synthesize_multiple_python
def _synthesize_multiple_python(self, text_file, output_file_path, quit_after=None, backwards=False): """ Synthesize multiple fragments via a Python call. :rtype: tuple (result, (anchors, current_time, num_chars)) """ self.log(u"Synthesizing multiple via a Python call...") ret = self._synthesize_multiple_generic( helper_function=self._synthesize_single_python_helper, text_file=text_file, output_file_path=output_file_path, quit_after=quit_after, backwards=backwards ) self.log(u"Synthesizing multiple via a Python call... done") return ret
python
def _synthesize_multiple_python(self, text_file, output_file_path, quit_after=None, backwards=False): """ Synthesize multiple fragments via a Python call. :rtype: tuple (result, (anchors, current_time, num_chars)) """ self.log(u"Synthesizing multiple via a Python call...") ret = self._synthesize_multiple_generic( helper_function=self._synthesize_single_python_helper, text_file=text_file, output_file_path=output_file_path, quit_after=quit_after, backwards=backwards ) self.log(u"Synthesizing multiple via a Python call... done") return ret
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Synthesize multiple fragments via a Python call. :rtype: tuple (result, (anchors, current_time, num_chars))
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L445-L460
train
227,144
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
BaseTTSWrapper._synthesize_multiple_subprocess
def _synthesize_multiple_subprocess(self, text_file, output_file_path, quit_after=None, backwards=False): """ Synthesize multiple fragments via ``subprocess``. :rtype: tuple (result, (anchors, current_time, num_chars)) """ self.log(u"Synthesizing multiple via subprocess...") ret = self._synthesize_multiple_generic( helper_function=self._synthesize_single_subprocess_helper, text_file=text_file, output_file_path=output_file_path, quit_after=quit_after, backwards=backwards ) self.log(u"Synthesizing multiple via subprocess... done") return ret
python
def _synthesize_multiple_subprocess(self, text_file, output_file_path, quit_after=None, backwards=False): """ Synthesize multiple fragments via ``subprocess``. :rtype: tuple (result, (anchors, current_time, num_chars)) """ self.log(u"Synthesizing multiple via subprocess...") ret = self._synthesize_multiple_generic( helper_function=self._synthesize_single_subprocess_helper, text_file=text_file, output_file_path=output_file_path, quit_after=quit_after, backwards=backwards ) self.log(u"Synthesizing multiple via subprocess... done") return ret
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L496-L511
train
227,145
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
BaseTTSWrapper._read_audio_data
def _read_audio_data(self, file_path): """ Read audio data from file. :rtype: tuple (True, (duration, sample_rate, codec, data)) or (False, None) on exception """ try: self.log(u"Reading audio data...") # if we know the TTS outputs to PCM16 mono WAVE # with the correct sample rate, # we can read samples directly from it, # without an intermediate conversion through ffmpeg audio_file = AudioFile( file_path=file_path, file_format=self.OUTPUT_AUDIO_FORMAT, rconf=self.rconf, logger=self.logger ) audio_file.read_samples_from_file() self.log([u"Duration of '%s': %f", file_path, audio_file.audio_length]) self.log(u"Reading audio data... done") return (True, ( audio_file.audio_length, audio_file.audio_sample_rate, audio_file.audio_format, audio_file.audio_samples )) except (AudioFileUnsupportedFormatError, OSError) as exc: self.log_exc(u"An unexpected error occurred while reading audio data", exc, True, None) return (False, None)
python
def _read_audio_data(self, file_path): """ Read audio data from file. :rtype: tuple (True, (duration, sample_rate, codec, data)) or (False, None) on exception """ try: self.log(u"Reading audio data...") # if we know the TTS outputs to PCM16 mono WAVE # with the correct sample rate, # we can read samples directly from it, # without an intermediate conversion through ffmpeg audio_file = AudioFile( file_path=file_path, file_format=self.OUTPUT_AUDIO_FORMAT, rconf=self.rconf, logger=self.logger ) audio_file.read_samples_from_file() self.log([u"Duration of '%s': %f", file_path, audio_file.audio_length]) self.log(u"Reading audio data... done") return (True, ( audio_file.audio_length, audio_file.audio_sample_rate, audio_file.audio_format, audio_file.audio_samples )) except (AudioFileUnsupportedFormatError, OSError) as exc: self.log_exc(u"An unexpected error occurred while reading audio data", exc, True, None) return (False, None)
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Read audio data from file. :rtype: tuple (True, (duration, sample_rate, codec, data)) or (False, None) on exception
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L639-L668
train
227,146
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
BaseTTSWrapper._loop_no_cache
def _loop_no_cache(self, helper_function, num, fragment): """ Synthesize all fragments without using the cache """ self.log([u"Examining fragment %d (no cache)...", num]) # synthesize and get the duration of the output file voice_code = self._language_to_voice_code(fragment.language) self.log(u"Calling helper function") succeeded, data = helper_function( text=fragment.filtered_text, voice_code=voice_code, output_file_path=None, return_audio_data=True ) # check output if not succeeded: self.log_crit(u"An unexpected error occurred in helper_function") return (False, None) self.log([u"Examining fragment %d (no cache)... done", num]) return (True, data)
python
def _loop_no_cache(self, helper_function, num, fragment): """ Synthesize all fragments without using the cache """ self.log([u"Examining fragment %d (no cache)...", num]) # synthesize and get the duration of the output file voice_code = self._language_to_voice_code(fragment.language) self.log(u"Calling helper function") succeeded, data = helper_function( text=fragment.filtered_text, voice_code=voice_code, output_file_path=None, return_audio_data=True ) # check output if not succeeded: self.log_crit(u"An unexpected error occurred in helper_function") return (False, None) self.log([u"Examining fragment %d (no cache)... done", num]) return (True, data)
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Synthesize all fragments without using the cache
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L769-L786
train
227,147
readbeyond/aeneas
aeneas/ttswrappers/basettswrapper.py
BaseTTSWrapper._loop_use_cache
def _loop_use_cache(self, helper_function, num, fragment): """ Synthesize all fragments using the cache """ self.log([u"Examining fragment %d (cache)...", num]) fragment_info = (fragment.language, fragment.filtered_text) if self.cache.is_cached(fragment_info): self.log(u"Fragment cached: retrieving audio data from cache") # read data from file, whose path is in the cache file_handler, file_path = self.cache.get(fragment_info) self.log([u"Reading cached fragment at '%s'...", file_path]) succeeded, data = self._read_audio_data(file_path) if not succeeded: self.log_crit(u"An unexpected error occurred while reading cached audio file") return (False, None) self.log([u"Reading cached fragment at '%s'... done", file_path]) else: self.log(u"Fragment not cached: synthesizing and caching") # creating destination file file_info = gf.tmp_file(suffix=u".cache.wav", root=self.rconf[RuntimeConfiguration.TMP_PATH]) file_handler, file_path = file_info self.log([u"Synthesizing fragment to '%s'...", file_path]) # synthesize and get the duration of the output file voice_code = self._language_to_voice_code(fragment.language) self.log(u"Calling helper function") succeeded, data = helper_function( text=fragment.filtered_text, voice_code=voice_code, output_file_path=file_path, return_audio_data=True ) # check output if not succeeded: self.log_crit(u"An unexpected error occurred in helper_function") return (False, None) self.log([u"Synthesizing fragment to '%s'... done", file_path]) duration, sr_nu, enc_nu, samples = data if duration > 0: self.log(u"Fragment has > 0 duration, adding it to cache") self.cache.add(fragment_info, file_info) self.log(u"Added fragment to cache") else: self.log(u"Fragment has zero duration, not adding it to cache") self.log([u"Closing file handler for cached output file path '%s'", file_path]) gf.close_file_handler(file_handler) self.log([u"Examining fragment %d (cache)... done", num]) return (True, data)
python
def _loop_use_cache(self, helper_function, num, fragment): """ Synthesize all fragments using the cache """ self.log([u"Examining fragment %d (cache)...", num]) fragment_info = (fragment.language, fragment.filtered_text) if self.cache.is_cached(fragment_info): self.log(u"Fragment cached: retrieving audio data from cache") # read data from file, whose path is in the cache file_handler, file_path = self.cache.get(fragment_info) self.log([u"Reading cached fragment at '%s'...", file_path]) succeeded, data = self._read_audio_data(file_path) if not succeeded: self.log_crit(u"An unexpected error occurred while reading cached audio file") return (False, None) self.log([u"Reading cached fragment at '%s'... done", file_path]) else: self.log(u"Fragment not cached: synthesizing and caching") # creating destination file file_info = gf.tmp_file(suffix=u".cache.wav", root=self.rconf[RuntimeConfiguration.TMP_PATH]) file_handler, file_path = file_info self.log([u"Synthesizing fragment to '%s'...", file_path]) # synthesize and get the duration of the output file voice_code = self._language_to_voice_code(fragment.language) self.log(u"Calling helper function") succeeded, data = helper_function( text=fragment.filtered_text, voice_code=voice_code, output_file_path=file_path, return_audio_data=True ) # check output if not succeeded: self.log_crit(u"An unexpected error occurred in helper_function") return (False, None) self.log([u"Synthesizing fragment to '%s'... done", file_path]) duration, sr_nu, enc_nu, samples = data if duration > 0: self.log(u"Fragment has > 0 duration, adding it to cache") self.cache.add(fragment_info, file_info) self.log(u"Added fragment to cache") else: self.log(u"Fragment has zero duration, not adding it to cache") self.log([u"Closing file handler for cached output file path '%s'", file_path]) gf.close_file_handler(file_handler) self.log([u"Examining fragment %d (cache)... done", num]) return (True, data)
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Synthesize all fragments using the cache
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/ttswrappers/basettswrapper.py#L788-L835
train
227,148
readbeyond/aeneas
aeneas/adjustboundaryalgorithm.py
AdjustBoundaryAlgorithm.adjust
def adjust( self, aba_parameters, boundary_indices, real_wave_mfcc, text_file, allow_arbitrary_shift=False ): """ Adjust the boundaries of the text map using the algorithm and parameters specified in the constructor, storing the sync map fragment list internally. :param dict aba_parameters: a dictionary containing the algorithm and its parameters, as produced by ``aba_parameters()`` in ``TaskConfiguration`` :param boundary_indices: the current boundary indices, with respect to the audio file full MFCCs :type boundary_indices: :class:`numpy.ndarray` (1D) :param real_wave_mfcc: the audio file MFCCs :type real_wave_mfcc: :class:`~aeneas.audiofilemfcc.AudioFileMFCC` :param text_file: the text file containing the text fragments associated :type text_file: :class:`~aeneas.textfile.TextFile` :param bool allow_arbitrary_shift: if ``True``, allow arbitrary shifts when adjusting zero length :rtype: list of :class:`~aeneas.syncmap.SyncMapFragmentList` """ self.log(u"Called adjust") if boundary_indices is None: self.log_exc(u"boundary_indices is None", None, True, TypeError) if not isinstance(real_wave_mfcc, AudioFileMFCC): self.log_exc(u"real_wave_mfcc is not an AudioFileMFCC object", None, True, TypeError) if not isinstance(text_file, TextFile): self.log_exc(u"text_file is not a TextFile object", None, True, TypeError) nozero = aba_parameters["nozero"] ns_min, ns_string = aba_parameters["nonspeech"] algorithm, algo_parameters = aba_parameters["algorithm"] self.log(u" Converting boundary indices to fragment list...") begin = real_wave_mfcc.middle_begin * real_wave_mfcc.rconf.mws end = real_wave_mfcc.middle_end * real_wave_mfcc.rconf.mws time_values = [begin] + list(boundary_indices * self.mws) + [end] self.intervals_to_fragment_list( text_file=text_file, time_values=time_values ) self.log(u" Converting boundary indices to fragment list... done") self.log(u" Processing fragments with zero length...") self._process_zero_length(nozero, allow_arbitrary_shift) self.log(u" Processing fragments with zero length... done") self.log(u" Processing nonspeech fragments...") self._process_long_nonspeech(ns_min, ns_string, real_wave_mfcc) self.log(u" Processing nonspeech fragments... done") self.log(u" Adjusting...") ALGORITHM_MAP = { self.AFTERCURRENT: self._adjust_aftercurrent, self.AUTO: self._adjust_auto, self.BEFORENEXT: self._adjust_beforenext, self.OFFSET: self._adjust_offset, self.PERCENT: self._adjust_percent, self.RATE: self._adjust_rate, self.RATEAGGRESSIVE: self._adjust_rate_aggressive, } ALGORITHM_MAP[algorithm](real_wave_mfcc, algo_parameters) self.log(u" Adjusting... done") self.log(u" Smoothing...") self._smooth_fragment_list(real_wave_mfcc.audio_length, ns_string) self.log(u" Smoothing... done") return self.smflist
python
def adjust( self, aba_parameters, boundary_indices, real_wave_mfcc, text_file, allow_arbitrary_shift=False ): """ Adjust the boundaries of the text map using the algorithm and parameters specified in the constructor, storing the sync map fragment list internally. :param dict aba_parameters: a dictionary containing the algorithm and its parameters, as produced by ``aba_parameters()`` in ``TaskConfiguration`` :param boundary_indices: the current boundary indices, with respect to the audio file full MFCCs :type boundary_indices: :class:`numpy.ndarray` (1D) :param real_wave_mfcc: the audio file MFCCs :type real_wave_mfcc: :class:`~aeneas.audiofilemfcc.AudioFileMFCC` :param text_file: the text file containing the text fragments associated :type text_file: :class:`~aeneas.textfile.TextFile` :param bool allow_arbitrary_shift: if ``True``, allow arbitrary shifts when adjusting zero length :rtype: list of :class:`~aeneas.syncmap.SyncMapFragmentList` """ self.log(u"Called adjust") if boundary_indices is None: self.log_exc(u"boundary_indices is None", None, True, TypeError) if not isinstance(real_wave_mfcc, AudioFileMFCC): self.log_exc(u"real_wave_mfcc is not an AudioFileMFCC object", None, True, TypeError) if not isinstance(text_file, TextFile): self.log_exc(u"text_file is not a TextFile object", None, True, TypeError) nozero = aba_parameters["nozero"] ns_min, ns_string = aba_parameters["nonspeech"] algorithm, algo_parameters = aba_parameters["algorithm"] self.log(u" Converting boundary indices to fragment list...") begin = real_wave_mfcc.middle_begin * real_wave_mfcc.rconf.mws end = real_wave_mfcc.middle_end * real_wave_mfcc.rconf.mws time_values = [begin] + list(boundary_indices * self.mws) + [end] self.intervals_to_fragment_list( text_file=text_file, time_values=time_values ) self.log(u" Converting boundary indices to fragment list... done") self.log(u" Processing fragments with zero length...") self._process_zero_length(nozero, allow_arbitrary_shift) self.log(u" Processing fragments with zero length... done") self.log(u" Processing nonspeech fragments...") self._process_long_nonspeech(ns_min, ns_string, real_wave_mfcc) self.log(u" Processing nonspeech fragments... done") self.log(u" Adjusting...") ALGORITHM_MAP = { self.AFTERCURRENT: self._adjust_aftercurrent, self.AUTO: self._adjust_auto, self.BEFORENEXT: self._adjust_beforenext, self.OFFSET: self._adjust_offset, self.PERCENT: self._adjust_percent, self.RATE: self._adjust_rate, self.RATEAGGRESSIVE: self._adjust_rate_aggressive, } ALGORITHM_MAP[algorithm](real_wave_mfcc, algo_parameters) self.log(u" Adjusting... done") self.log(u" Smoothing...") self._smooth_fragment_list(real_wave_mfcc.audio_length, ns_string) self.log(u" Smoothing... done") return self.smflist
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Adjust the boundaries of the text map using the algorithm and parameters specified in the constructor, storing the sync map fragment list internally. :param dict aba_parameters: a dictionary containing the algorithm and its parameters, as produced by ``aba_parameters()`` in ``TaskConfiguration`` :param boundary_indices: the current boundary indices, with respect to the audio file full MFCCs :type boundary_indices: :class:`numpy.ndarray` (1D) :param real_wave_mfcc: the audio file MFCCs :type real_wave_mfcc: :class:`~aeneas.audiofilemfcc.AudioFileMFCC` :param text_file: the text file containing the text fragments associated :type text_file: :class:`~aeneas.textfile.TextFile` :param bool allow_arbitrary_shift: if ``True``, allow arbitrary shifts when adjusting zero length :rtype: list of :class:`~aeneas.syncmap.SyncMapFragmentList`
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/adjustboundaryalgorithm.py#L236-L310
train
227,149
readbeyond/aeneas
aeneas/adjustboundaryalgorithm.py
AdjustBoundaryAlgorithm.append_fragment_list_to_sync_root
def append_fragment_list_to_sync_root(self, sync_root): """ Append the sync map fragment list to the given node from a sync map tree. :param sync_root: the root of the sync map tree to which the new nodes should be appended :type sync_root: :class:`~aeneas.tree.Tree` """ if not isinstance(sync_root, Tree): self.log_exc(u"sync_root is not a Tree object", None, True, TypeError) self.log(u"Appending fragment list to sync root...") for fragment in self.smflist: sync_root.add_child(Tree(value=fragment)) self.log(u"Appending fragment list to sync root... done")
python
def append_fragment_list_to_sync_root(self, sync_root): """ Append the sync map fragment list to the given node from a sync map tree. :param sync_root: the root of the sync map tree to which the new nodes should be appended :type sync_root: :class:`~aeneas.tree.Tree` """ if not isinstance(sync_root, Tree): self.log_exc(u"sync_root is not a Tree object", None, True, TypeError) self.log(u"Appending fragment list to sync root...") for fragment in self.smflist: sync_root.add_child(Tree(value=fragment)) self.log(u"Appending fragment list to sync root... done")
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Append the sync map fragment list to the given node from a sync map tree. :param sync_root: the root of the sync map tree to which the new nodes should be appended :type sync_root: :class:`~aeneas.tree.Tree`
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/adjustboundaryalgorithm.py#L387-L401
train
227,150
readbeyond/aeneas
aeneas/adjustboundaryalgorithm.py
AdjustBoundaryAlgorithm._process_zero_length
def _process_zero_length(self, nozero, allow_arbitrary_shift): """ If ``nozero`` is ``True``, modify the sync map fragment list so that no fragment will have zero length. """ self.log(u"Called _process_zero_length") if not nozero: self.log(u"Processing zero length intervals not requested: returning") return self.log(u"Processing zero length intervals requested") self.log(u" Checking and fixing...") duration = self.rconf[RuntimeConfiguration.ABA_NO_ZERO_DURATION] self.log([u" Requested no zero duration: %.3f", duration]) if not allow_arbitrary_shift: self.log(u" No arbitrary shift => taking max with mws") duration = self.rconf.mws.geq_multiple(duration) self.log([u" Actual no zero duration: %.3f", duration]) # ignore HEAD and TAIL max_index = len(self.smflist) - 1 self.smflist.fix_zero_length_fragments( duration=duration, min_index=1, max_index=max_index ) self.log(u" Checking and fixing... done") if self.smflist.has_zero_length_fragments(1, max_index): self.log_warn(u" The fragment list still has fragments with zero length") else: self.log(u" The fragment list does not have fragments with zero length")
python
def _process_zero_length(self, nozero, allow_arbitrary_shift): """ If ``nozero`` is ``True``, modify the sync map fragment list so that no fragment will have zero length. """ self.log(u"Called _process_zero_length") if not nozero: self.log(u"Processing zero length intervals not requested: returning") return self.log(u"Processing zero length intervals requested") self.log(u" Checking and fixing...") duration = self.rconf[RuntimeConfiguration.ABA_NO_ZERO_DURATION] self.log([u" Requested no zero duration: %.3f", duration]) if not allow_arbitrary_shift: self.log(u" No arbitrary shift => taking max with mws") duration = self.rconf.mws.geq_multiple(duration) self.log([u" Actual no zero duration: %.3f", duration]) # ignore HEAD and TAIL max_index = len(self.smflist) - 1 self.smflist.fix_zero_length_fragments( duration=duration, min_index=1, max_index=max_index ) self.log(u" Checking and fixing... done") if self.smflist.has_zero_length_fragments(1, max_index): self.log_warn(u" The fragment list still has fragments with zero length") else: self.log(u" The fragment list does not have fragments with zero length")
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/adjustboundaryalgorithm.py#L407-L435
train
227,151
readbeyond/aeneas
pyinstaller-aeneas-cli.py
main
def main(): """ This is the aeneas-cli "hydra" script, to be compiled by pyinstaller. """ if FROZEN: HydraCLI(invoke="aeneas-cli").run( arguments=sys.argv, show_help=False ) else: HydraCLI(invoke="pyinstaller-aeneas-cli.py").run( arguments=sys.argv, show_help=False )
python
def main(): """ This is the aeneas-cli "hydra" script, to be compiled by pyinstaller. """ if FROZEN: HydraCLI(invoke="aeneas-cli").run( arguments=sys.argv, show_help=False ) else: HydraCLI(invoke="pyinstaller-aeneas-cli.py").run( arguments=sys.argv, show_help=False )
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/pyinstaller-aeneas-cli.py#L48-L62
train
227,152
readbeyond/aeneas
aeneas/vad.py
VAD.run_vad
def run_vad( self, wave_energy, log_energy_threshold=None, min_nonspeech_length=None, extend_before=None, extend_after=None ): """ Compute the time intervals containing speech and nonspeech, and return a boolean mask with speech frames set to ``True``, and nonspeech frames set to ``False``. The last four parameters might be ``None``: in this case, the corresponding RuntimeConfiguration values are applied. :param wave_energy: the energy vector of the audio file (0-th MFCC) :type wave_energy: :class:`numpy.ndarray` (1D) :param float log_energy_threshold: the minimum log energy threshold to consider a frame as speech :param int min_nonspeech_length: the minimum length, in frames, of a nonspeech interval :param int extend_before: extend each speech interval by this number of frames to the left (before) :param int extend_after: extend each speech interval by this number of frames to the right (after) :rtype: :class:`numpy.ndarray` (1D) """ self.log(u"Computing VAD for wave") mfcc_window_shift = self.rconf.mws self.log([u"MFCC window shift (s): %.3f", mfcc_window_shift]) if log_energy_threshold is None: log_energy_threshold = self.rconf[RuntimeConfiguration.VAD_LOG_ENERGY_THRESHOLD] self.log([u"Log energy threshold: %.3f", log_energy_threshold]) if min_nonspeech_length is None: min_nonspeech_length = int(self.rconf[RuntimeConfiguration.VAD_MIN_NONSPEECH_LENGTH] / mfcc_window_shift) self.log([u"Min nonspeech length (s): %.3f", self.rconf[RuntimeConfiguration.VAD_MIN_NONSPEECH_LENGTH]]) if extend_before is None: extend_before = int(self.rconf[RuntimeConfiguration.VAD_EXTEND_SPEECH_INTERVAL_BEFORE] / mfcc_window_shift) self.log([u"Extend speech before (s): %.3f", self.rconf[RuntimeConfiguration.VAD_EXTEND_SPEECH_INTERVAL_BEFORE]]) if extend_after is None: extend_after = int(self.rconf[RuntimeConfiguration.VAD_EXTEND_SPEECH_INTERVAL_AFTER] / mfcc_window_shift) self.log([u"Extend speech after (s): %.3f", self.rconf[RuntimeConfiguration.VAD_EXTEND_SPEECH_INTERVAL_AFTER]]) energy_length = len(wave_energy) energy_threshold = numpy.min(wave_energy) + log_energy_threshold self.log([u"Min nonspeech length (frames): %d", min_nonspeech_length]) self.log([u"Extend speech before (frames): %d", extend_before]) self.log([u"Extend speech after (frames): %d", extend_after]) self.log([u"Energy vector length (frames): %d", energy_length]) self.log([u"Energy threshold (log): %.3f", energy_threshold]) # using windows to be sure we have at least # min_nonspeech_length consecutive frames with nonspeech self.log(u"Determining initial labels...") mask = wave_energy >= energy_threshold windows = self._rolling_window(mask, min_nonspeech_length) nonspeech_runs = self._compute_runs((numpy.where(numpy.sum(windows, axis=1) == 0))[0]) self.log(u"Determining initial labels... done") # initially, everything is marked as speech # we remove the nonspeech intervals as needed, # possibly extending the adjacent speech interval # if requested by the user self.log(u"Determining final labels...") mask = numpy.ones(energy_length, dtype="bool") for ns in nonspeech_runs: start = ns[0] if (extend_after > 0) and (start > 0): start += extend_after stop = ns[-1] + min_nonspeech_length if (extend_before > 0) and (stop < energy_length - 1): stop -= extend_before mask[start:stop] = 0 self.log(u"Determining final labels... done") return mask
python
def run_vad( self, wave_energy, log_energy_threshold=None, min_nonspeech_length=None, extend_before=None, extend_after=None ): """ Compute the time intervals containing speech and nonspeech, and return a boolean mask with speech frames set to ``True``, and nonspeech frames set to ``False``. The last four parameters might be ``None``: in this case, the corresponding RuntimeConfiguration values are applied. :param wave_energy: the energy vector of the audio file (0-th MFCC) :type wave_energy: :class:`numpy.ndarray` (1D) :param float log_energy_threshold: the minimum log energy threshold to consider a frame as speech :param int min_nonspeech_length: the minimum length, in frames, of a nonspeech interval :param int extend_before: extend each speech interval by this number of frames to the left (before) :param int extend_after: extend each speech interval by this number of frames to the right (after) :rtype: :class:`numpy.ndarray` (1D) """ self.log(u"Computing VAD for wave") mfcc_window_shift = self.rconf.mws self.log([u"MFCC window shift (s): %.3f", mfcc_window_shift]) if log_energy_threshold is None: log_energy_threshold = self.rconf[RuntimeConfiguration.VAD_LOG_ENERGY_THRESHOLD] self.log([u"Log energy threshold: %.3f", log_energy_threshold]) if min_nonspeech_length is None: min_nonspeech_length = int(self.rconf[RuntimeConfiguration.VAD_MIN_NONSPEECH_LENGTH] / mfcc_window_shift) self.log([u"Min nonspeech length (s): %.3f", self.rconf[RuntimeConfiguration.VAD_MIN_NONSPEECH_LENGTH]]) if extend_before is None: extend_before = int(self.rconf[RuntimeConfiguration.VAD_EXTEND_SPEECH_INTERVAL_BEFORE] / mfcc_window_shift) self.log([u"Extend speech before (s): %.3f", self.rconf[RuntimeConfiguration.VAD_EXTEND_SPEECH_INTERVAL_BEFORE]]) if extend_after is None: extend_after = int(self.rconf[RuntimeConfiguration.VAD_EXTEND_SPEECH_INTERVAL_AFTER] / mfcc_window_shift) self.log([u"Extend speech after (s): %.3f", self.rconf[RuntimeConfiguration.VAD_EXTEND_SPEECH_INTERVAL_AFTER]]) energy_length = len(wave_energy) energy_threshold = numpy.min(wave_energy) + log_energy_threshold self.log([u"Min nonspeech length (frames): %d", min_nonspeech_length]) self.log([u"Extend speech before (frames): %d", extend_before]) self.log([u"Extend speech after (frames): %d", extend_after]) self.log([u"Energy vector length (frames): %d", energy_length]) self.log([u"Energy threshold (log): %.3f", energy_threshold]) # using windows to be sure we have at least # min_nonspeech_length consecutive frames with nonspeech self.log(u"Determining initial labels...") mask = wave_energy >= energy_threshold windows = self._rolling_window(mask, min_nonspeech_length) nonspeech_runs = self._compute_runs((numpy.where(numpy.sum(windows, axis=1) == 0))[0]) self.log(u"Determining initial labels... done") # initially, everything is marked as speech # we remove the nonspeech intervals as needed, # possibly extending the adjacent speech interval # if requested by the user self.log(u"Determining final labels...") mask = numpy.ones(energy_length, dtype="bool") for ns in nonspeech_runs: start = ns[0] if (extend_after > 0) and (start > 0): start += extend_after stop = ns[-1] + min_nonspeech_length if (extend_before > 0) and (stop < energy_length - 1): stop -= extend_before mask[start:stop] = 0 self.log(u"Determining final labels... done") return mask
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/vad.py#L60-L131
train
227,153
readbeyond/aeneas
aeneas/vad.py
VAD._compute_runs
def _compute_runs(self, array): """ Compute runs as a list of arrays, each containing the indices of a contiguous run. :param array: the data array :type array: numpy 1D array :rtype: list of numpy 1D arrays """ if len(array) < 1: return [] return numpy.split(array, numpy.where(numpy.diff(array) != 1)[0] + 1)
python
def _compute_runs(self, array): """ Compute runs as a list of arrays, each containing the indices of a contiguous run. :param array: the data array :type array: numpy 1D array :rtype: list of numpy 1D arrays """ if len(array) < 1: return [] return numpy.split(array, numpy.where(numpy.diff(array) != 1)[0] + 1)
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/vad.py#L134-L145
train
227,154
readbeyond/aeneas
aeneas/vad.py
VAD._rolling_window
def _rolling_window(self, array, size): """ Compute rolling windows of width ``size`` of the given array. Return a numpy 2D stride array, where rows are the windows, each of ``size`` elements. :param array: the data array :type array: numpy 1D array (n) :param int size: the width of each window :rtype: numpy 2D stride array (n // size, size) """ shape = array.shape[:-1] + (array.shape[-1] - size + 1, size) strides = array.strides + (array.strides[-1],) return numpy.lib.stride_tricks.as_strided(array, shape=shape, strides=strides)
python
def _rolling_window(self, array, size): """ Compute rolling windows of width ``size`` of the given array. Return a numpy 2D stride array, where rows are the windows, each of ``size`` elements. :param array: the data array :type array: numpy 1D array (n) :param int size: the width of each window :rtype: numpy 2D stride array (n // size, size) """ shape = array.shape[:-1] + (array.shape[-1] - size + 1, size) strides = array.strides + (array.strides[-1],) return numpy.lib.stride_tricks.as_strided(array, shape=shape, strides=strides)
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9d95535ad63eef4a98530cfdff033b8c35315ee1
https://github.com/readbeyond/aeneas/blob/9d95535ad63eef4a98530cfdff033b8c35315ee1/aeneas/vad.py#L148-L162
train
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pysam-developers/pysam
pysam/utils.py
PysamDispatcher.usage
def usage(self): '''return the samtools usage information for this command''' retval, stderr, stdout = _pysam_dispatch( self.collection, self.dispatch, is_usage=True, catch_stdout=True) # some tools write usage to stderr, such as mpileup if stderr: return stderr else: return stdout
python
def usage(self): '''return the samtools usage information for this command''' retval, stderr, stdout = _pysam_dispatch( self.collection, self.dispatch, is_usage=True, catch_stdout=True) # some tools write usage to stderr, such as mpileup if stderr: return stderr else: return stdout
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return the samtools usage information for this command
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9961bebd4cd1f2bf5e42817df25699a6e6344b5a
https://github.com/pysam-developers/pysam/blob/9961bebd4cd1f2bf5e42817df25699a6e6344b5a/pysam/utils.py#L93-L104
train
227,156
pysam-developers/pysam
pysam/Pileup.py
iterate
def iterate(infile): '''iterate over ``samtools pileup -c`` formatted file. *infile* can be any iterator over a lines. The function yields named tuples of the type :class:`pysam.Pileup.PileupSubstitution` or :class:`pysam.Pileup.PileupIndel`. .. note:: The parser converts to 0-based coordinates ''' conv_subst = (str, lambda x: int(x) - 1, str, str, int, int, int, int, str, str) conv_indel = (str, lambda x: int(x) - 1, str, str, int, int, int, int, str, str, int, int, int) for line in infile: d = line[:-1].split() if d[2] == "*": try: yield PileupIndel(*[x(y) for x, y in zip(conv_indel, d)]) except TypeError: raise pysam.SamtoolsError("parsing error in line: `%s`" % line) else: try: yield PileupSubstitution(*[x(y) for x, y in zip(conv_subst, d)]) except TypeError: raise pysam.SamtoolsError("parsing error in line: `%s`" % line)
python
def iterate(infile): '''iterate over ``samtools pileup -c`` formatted file. *infile* can be any iterator over a lines. The function yields named tuples of the type :class:`pysam.Pileup.PileupSubstitution` or :class:`pysam.Pileup.PileupIndel`. .. note:: The parser converts to 0-based coordinates ''' conv_subst = (str, lambda x: int(x) - 1, str, str, int, int, int, int, str, str) conv_indel = (str, lambda x: int(x) - 1, str, str, int, int, int, int, str, str, int, int, int) for line in infile: d = line[:-1].split() if d[2] == "*": try: yield PileupIndel(*[x(y) for x, y in zip(conv_indel, d)]) except TypeError: raise pysam.SamtoolsError("parsing error in line: `%s`" % line) else: try: yield PileupSubstitution(*[x(y) for x, y in zip(conv_subst, d)]) except TypeError: raise pysam.SamtoolsError("parsing error in line: `%s`" % line)
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iterate over ``samtools pileup -c`` formatted file. *infile* can be any iterator over a lines. The function yields named tuples of the type :class:`pysam.Pileup.PileupSubstitution` or :class:`pysam.Pileup.PileupIndel`. .. note:: The parser converts to 0-based coordinates
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9961bebd4cd1f2bf5e42817df25699a6e6344b5a
https://github.com/pysam-developers/pysam/blob/9961bebd4cd1f2bf5e42817df25699a6e6344b5a/pysam/Pileup.py#L35-L64
train
227,157
pysam-developers/pysam
pysam/Pileup.py
vcf2pileup
def vcf2pileup(vcf, sample): '''convert vcf record to pileup record.''' chromosome = vcf.contig pos = vcf.pos reference = vcf.ref allelles = [reference] + vcf.alt data = vcf[sample] # get genotype genotypes = data["GT"] if len(genotypes) > 1: raise ValueError("only single genotype per position, %s" % (str(vcf))) genotypes = genotypes[0] # not a variant if genotypes[0] == ".": return None genotypes = [allelles[int(x)] for x in genotypes if x != "/"] # snp_quality is "genotype quality" snp_quality = consensus_quality = data.get("GQ", [0])[0] mapping_quality = vcf.info.get("MQ", [0])[0] coverage = data.get("DP", 0) if len(reference) > 1 or max([len(x) for x in vcf.alt]) > 1: # indel genotype, offset = translateIndelGenotypeFromVCF(genotypes, reference) return PileupIndel(chromosome, pos + offset, "*", genotype, consensus_quality, snp_quality, mapping_quality, coverage, genotype, "<" * len(genotype), 0, 0, 0) else: genotype = encodeGenotype("".join(genotypes)) read_bases = "" base_qualities = "" return PileupSubstitution(chromosome, pos, reference, genotype, consensus_quality, snp_quality, mapping_quality, coverage, read_bases, base_qualities)
python
def vcf2pileup(vcf, sample): '''convert vcf record to pileup record.''' chromosome = vcf.contig pos = vcf.pos reference = vcf.ref allelles = [reference] + vcf.alt data = vcf[sample] # get genotype genotypes = data["GT"] if len(genotypes) > 1: raise ValueError("only single genotype per position, %s" % (str(vcf))) genotypes = genotypes[0] # not a variant if genotypes[0] == ".": return None genotypes = [allelles[int(x)] for x in genotypes if x != "/"] # snp_quality is "genotype quality" snp_quality = consensus_quality = data.get("GQ", [0])[0] mapping_quality = vcf.info.get("MQ", [0])[0] coverage = data.get("DP", 0) if len(reference) > 1 or max([len(x) for x in vcf.alt]) > 1: # indel genotype, offset = translateIndelGenotypeFromVCF(genotypes, reference) return PileupIndel(chromosome, pos + offset, "*", genotype, consensus_quality, snp_quality, mapping_quality, coverage, genotype, "<" * len(genotype), 0, 0, 0) else: genotype = encodeGenotype("".join(genotypes)) read_bases = "" base_qualities = "" return PileupSubstitution(chromosome, pos, reference, genotype, consensus_quality, snp_quality, mapping_quality, coverage, read_bases, base_qualities)
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convert vcf record to pileup record.
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9961bebd4cd1f2bf5e42817df25699a6e6344b5a
https://github.com/pysam-developers/pysam/blob/9961bebd4cd1f2bf5e42817df25699a6e6344b5a/pysam/Pileup.py#L198-L253
train
227,158
pysam-developers/pysam
pysam/Pileup.py
iterate_from_vcf
def iterate_from_vcf(infile, sample): '''iterate over a vcf-formatted file. *infile* can be any iterator over a lines. The function yields named tuples of the type :class:`pysam.Pileup.PileupSubstitution` or :class:`pysam.Pileup.PileupIndel`. Positions without a snp will be skipped. This method is wasteful and written to support same legacy code that expects samtools pileup output. Better use the vcf parser directly. ''' vcf = pysam.VCF() vcf.connect(infile) if sample not in vcf.getsamples(): raise KeyError("sample %s not vcf file") for row in vcf.fetch(): result = vcf2pileup(row, sample) if result: yield result
python
def iterate_from_vcf(infile, sample): '''iterate over a vcf-formatted file. *infile* can be any iterator over a lines. The function yields named tuples of the type :class:`pysam.Pileup.PileupSubstitution` or :class:`pysam.Pileup.PileupIndel`. Positions without a snp will be skipped. This method is wasteful and written to support same legacy code that expects samtools pileup output. Better use the vcf parser directly. ''' vcf = pysam.VCF() vcf.connect(infile) if sample not in vcf.getsamples(): raise KeyError("sample %s not vcf file") for row in vcf.fetch(): result = vcf2pileup(row, sample) if result: yield result
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iterate over a vcf-formatted file. *infile* can be any iterator over a lines. The function yields named tuples of the type :class:`pysam.Pileup.PileupSubstitution` or :class:`pysam.Pileup.PileupIndel`. Positions without a snp will be skipped. This method is wasteful and written to support same legacy code that expects samtools pileup output. Better use the vcf parser directly.
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9961bebd4cd1f2bf5e42817df25699a6e6344b5a
https://github.com/pysam-developers/pysam/blob/9961bebd4cd1f2bf5e42817df25699a6e6344b5a/pysam/Pileup.py#L256-L282
train
227,159
pysam-developers/pysam
devtools/import.py
_update_pysam_files
def _update_pysam_files(cf, destdir): '''update pysam files applying redirection of ouput''' basename = os.path.basename(destdir) for filename in cf: if not filename: continue dest = filename + ".pysam.c" with open(filename, encoding="utf-8") as infile: lines = "".join(infile.readlines()) with open(dest, "w", encoding="utf-8") as outfile: outfile.write('#include "{}.pysam.h"\n\n'.format(basename)) subname, _ = os.path.splitext(os.path.basename(filename)) if subname in MAIN.get(basename, []): lines = re.sub(r"int main\(", "int {}_main(".format( basename), lines) else: lines = re.sub(r"int main\(", "int {}_{}_main(".format( basename, subname), lines) lines = re.sub("stderr", "{}_stderr".format(basename), lines) lines = re.sub("stdout", "{}_stdout".format(basename), lines) lines = re.sub(r" printf\(", " fprintf({}_stdout, ".format(basename), lines) lines = re.sub(r"([^kf])puts\(", r"\1{}_puts(".format(basename), lines) lines = re.sub(r"putchar\(([^)]+)\)", r"fputc(\1, {}_stdout)".format(basename), lines) fn = os.path.basename(filename) # some specific fixes: SPECIFIC_SUBSTITUTIONS = { "bam_md.c": ( 'sam_open_format("-", mode_w', 'sam_open_format({}_stdout_fn, mode_w'.format(basename)), "phase.c": ( 'putc("ACGT"[f->seq[j] == 1? (c&3, {}_stdout) : (c>>16&3)]);'.format(basename), 'putc("ACGT"[f->seq[j] == 1? (c&3) : (c>>16&3)], {}_stdout);'.format(basename)), "cut_target.c": ( 'putc(33 + (cns[j]>>8>>2, {}_stdout));'.format(basename), 'putc(33 + (cns[j]>>8>>2), {}_stdout);'.format(basename)) } if fn in SPECIFIC_SUBSTITUTIONS: lines = lines.replace( SPECIFIC_SUBSTITUTIONS[fn][0], SPECIFIC_SUBSTITUTIONS[fn][1]) outfile.write(lines) with open(os.path.join("import", "pysam.h")) as inf, \ open(os.path.join(destdir, "{}.pysam.h".format(basename)), "w") as outf: outf.write(re.sub("@pysam@", basename, inf.read())) with open(os.path.join("import", "pysam.c")) as inf, \ open(os.path.join(destdir, "{}.pysam.c".format(basename)), "w") as outf: outf.write(re.sub("@pysam@", basename, inf.read()))
python
def _update_pysam_files(cf, destdir): '''update pysam files applying redirection of ouput''' basename = os.path.basename(destdir) for filename in cf: if not filename: continue dest = filename + ".pysam.c" with open(filename, encoding="utf-8") as infile: lines = "".join(infile.readlines()) with open(dest, "w", encoding="utf-8") as outfile: outfile.write('#include "{}.pysam.h"\n\n'.format(basename)) subname, _ = os.path.splitext(os.path.basename(filename)) if subname in MAIN.get(basename, []): lines = re.sub(r"int main\(", "int {}_main(".format( basename), lines) else: lines = re.sub(r"int main\(", "int {}_{}_main(".format( basename, subname), lines) lines = re.sub("stderr", "{}_stderr".format(basename), lines) lines = re.sub("stdout", "{}_stdout".format(basename), lines) lines = re.sub(r" printf\(", " fprintf({}_stdout, ".format(basename), lines) lines = re.sub(r"([^kf])puts\(", r"\1{}_puts(".format(basename), lines) lines = re.sub(r"putchar\(([^)]+)\)", r"fputc(\1, {}_stdout)".format(basename), lines) fn = os.path.basename(filename) # some specific fixes: SPECIFIC_SUBSTITUTIONS = { "bam_md.c": ( 'sam_open_format("-", mode_w', 'sam_open_format({}_stdout_fn, mode_w'.format(basename)), "phase.c": ( 'putc("ACGT"[f->seq[j] == 1? (c&3, {}_stdout) : (c>>16&3)]);'.format(basename), 'putc("ACGT"[f->seq[j] == 1? (c&3) : (c>>16&3)], {}_stdout);'.format(basename)), "cut_target.c": ( 'putc(33 + (cns[j]>>8>>2, {}_stdout));'.format(basename), 'putc(33 + (cns[j]>>8>>2), {}_stdout);'.format(basename)) } if fn in SPECIFIC_SUBSTITUTIONS: lines = lines.replace( SPECIFIC_SUBSTITUTIONS[fn][0], SPECIFIC_SUBSTITUTIONS[fn][1]) outfile.write(lines) with open(os.path.join("import", "pysam.h")) as inf, \ open(os.path.join(destdir, "{}.pysam.h".format(basename)), "w") as outf: outf.write(re.sub("@pysam@", basename, inf.read())) with open(os.path.join("import", "pysam.c")) as inf, \ open(os.path.join(destdir, "{}.pysam.c".format(basename)), "w") as outf: outf.write(re.sub("@pysam@", basename, inf.read()))
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update pysam files applying redirection of ouput
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9961bebd4cd1f2bf5e42817df25699a6e6344b5a
https://github.com/pysam-developers/pysam/blob/9961bebd4cd1f2bf5e42817df25699a6e6344b5a/devtools/import.py#L83-L134
train
227,160
pysam-developers/pysam
pysam/__init__.py
get_include
def get_include(): '''return a list of include directories.''' dirname = os.path.abspath(os.path.join(os.path.dirname(__file__))) # # Header files may be stored in different relative locations # depending on installation mode (e.g., `python setup.py install`, # `python setup.py develop`. The first entry in each list is # where develop-mode headers can be found. # htslib_possibilities = [os.path.join(dirname, '..', 'htslib'), os.path.join(dirname, 'include', 'htslib')] samtool_possibilities = [os.path.join(dirname, '..', 'samtools'), os.path.join(dirname, 'include', 'samtools')] includes = [dirname] for header_locations in [htslib_possibilities, samtool_possibilities]: for header_location in header_locations: if os.path.exists(header_location): includes.append(os.path.abspath(header_location)) break return includes
python
def get_include(): '''return a list of include directories.''' dirname = os.path.abspath(os.path.join(os.path.dirname(__file__))) # # Header files may be stored in different relative locations # depending on installation mode (e.g., `python setup.py install`, # `python setup.py develop`. The first entry in each list is # where develop-mode headers can be found. # htslib_possibilities = [os.path.join(dirname, '..', 'htslib'), os.path.join(dirname, 'include', 'htslib')] samtool_possibilities = [os.path.join(dirname, '..', 'samtools'), os.path.join(dirname, 'include', 'samtools')] includes = [dirname] for header_locations in [htslib_possibilities, samtool_possibilities]: for header_location in header_locations: if os.path.exists(header_location): includes.append(os.path.abspath(header_location)) break return includes
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return a list of include directories.
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9961bebd4cd1f2bf5e42817df25699a6e6344b5a
https://github.com/pysam-developers/pysam/blob/9961bebd4cd1f2bf5e42817df25699a6e6344b5a/pysam/__init__.py#L53-L75
train
227,161
pysam-developers/pysam
pysam/__init__.py
get_libraries
def get_libraries(): '''return a list of libraries to link against.''' # Note that this list does not include libcsamtools.so as there are # numerous name conflicts with libchtslib.so. dirname = os.path.abspath(os.path.join(os.path.dirname(__file__))) pysam_libs = ['libctabixproxies', 'libcfaidx', 'libcsamfile', 'libcvcf', 'libcbcf', 'libctabix'] if pysam.config.HTSLIB == "builtin": pysam_libs.append('libchtslib') so = sysconfig.get_config_var('SO') return [os.path.join(dirname, x + so) for x in pysam_libs]
python
def get_libraries(): '''return a list of libraries to link against.''' # Note that this list does not include libcsamtools.so as there are # numerous name conflicts with libchtslib.so. dirname = os.path.abspath(os.path.join(os.path.dirname(__file__))) pysam_libs = ['libctabixproxies', 'libcfaidx', 'libcsamfile', 'libcvcf', 'libcbcf', 'libctabix'] if pysam.config.HTSLIB == "builtin": pysam_libs.append('libchtslib') so = sysconfig.get_config_var('SO') return [os.path.join(dirname, x + so) for x in pysam_libs]
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return a list of libraries to link against.
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9961bebd4cd1f2bf5e42817df25699a6e6344b5a
https://github.com/pysam-developers/pysam/blob/9961bebd4cd1f2bf5e42817df25699a6e6344b5a/pysam/__init__.py#L85-L100
train
227,162
nerdvegas/rez
src/rez/vendor/pygraph/classes/digraph.py
digraph.has_edge
def has_edge(self, edge): """ Return whether an edge exists. @type edge: tuple @param edge: Edge. @rtype: boolean @return: Truth-value for edge existence. """ u, v = edge return (u, v) in self.edge_properties
python
def has_edge(self, edge): """ Return whether an edge exists. @type edge: tuple @param edge: Edge. @rtype: boolean @return: Truth-value for edge existence. """ u, v = edge return (u, v) in self.edge_properties
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Return whether an edge exists. @type edge: tuple @param edge: Edge. @rtype: boolean @return: Truth-value for edge existence.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/vendor/pygraph/classes/digraph.py#L214-L225
train
227,163
nerdvegas/rez
src/rez/package_serialise.py
dump_package_data
def dump_package_data(data, buf, format_=FileFormat.py, skip_attributes=None): """Write package data to `buf`. Args: data (dict): Data source - must conform to `package_serialise_schema`. buf (file-like object): Destination stream. format_ (`FileFormat`): Format to dump data in. skip_attributes (list of str): List of attributes to not print. """ if format_ == FileFormat.txt: raise ValueError("'txt' format not supported for packages.") data_ = dict((k, v) for k, v in data.iteritems() if v is not None) data_ = package_serialise_schema.validate(data_) skip = set(skip_attributes or []) items = [] for key in package_key_order: if key not in skip: value = data_.pop(key, None) if value is not None: items.append((key, value)) # remaining are arbitrary keys for key, value in data_.iteritems(): if key not in skip: items.append((key, value)) dump_func = dump_functions[format_] dump_func(items, buf)
python
def dump_package_data(data, buf, format_=FileFormat.py, skip_attributes=None): """Write package data to `buf`. Args: data (dict): Data source - must conform to `package_serialise_schema`. buf (file-like object): Destination stream. format_ (`FileFormat`): Format to dump data in. skip_attributes (list of str): List of attributes to not print. """ if format_ == FileFormat.txt: raise ValueError("'txt' format not supported for packages.") data_ = dict((k, v) for k, v in data.iteritems() if v is not None) data_ = package_serialise_schema.validate(data_) skip = set(skip_attributes or []) items = [] for key in package_key_order: if key not in skip: value = data_.pop(key, None) if value is not None: items.append((key, value)) # remaining are arbitrary keys for key, value in data_.iteritems(): if key not in skip: items.append((key, value)) dump_func = dump_functions[format_] dump_func(items, buf)
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Write package data to `buf`. Args: data (dict): Data source - must conform to `package_serialise_schema`. buf (file-like object): Destination stream. format_ (`FileFormat`): Format to dump data in. skip_attributes (list of str): List of attributes to not print.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/package_serialise.py#L97-L126
train
227,164
nerdvegas/rez
src/rez/vendor/distlib/_backport/sysconfig.py
get_config_vars
def get_config_vars(*args): """With no arguments, return a dictionary of all configuration variables relevant for the current platform. On Unix, this means every variable defined in Python's installed Makefile; On Windows and Mac OS it's a much smaller set. With arguments, return a list of values that result from looking up each argument in the configuration variable dictionary. """ global _CONFIG_VARS if _CONFIG_VARS is None: _CONFIG_VARS = {} # Normalized versions of prefix and exec_prefix are handy to have; # in fact, these are the standard versions used most places in the # distutils2 module. _CONFIG_VARS['prefix'] = _PREFIX _CONFIG_VARS['exec_prefix'] = _EXEC_PREFIX _CONFIG_VARS['py_version'] = _PY_VERSION _CONFIG_VARS['py_version_short'] = _PY_VERSION_SHORT _CONFIG_VARS['py_version_nodot'] = _PY_VERSION[0] + _PY_VERSION[2] _CONFIG_VARS['base'] = _PREFIX _CONFIG_VARS['platbase'] = _EXEC_PREFIX _CONFIG_VARS['projectbase'] = _PROJECT_BASE try: _CONFIG_VARS['abiflags'] = sys.abiflags except AttributeError: # sys.abiflags may not be defined on all platforms. _CONFIG_VARS['abiflags'] = '' if os.name in ('nt', 'os2'): _init_non_posix(_CONFIG_VARS) if os.name == 'posix': _init_posix(_CONFIG_VARS) # Setting 'userbase' is done below the call to the # init function to enable using 'get_config_var' in # the init-function. if sys.version >= '2.6': _CONFIG_VARS['userbase'] = _getuserbase() if 'srcdir' not in _CONFIG_VARS: _CONFIG_VARS['srcdir'] = _PROJECT_BASE else: _CONFIG_VARS['srcdir'] = _safe_realpath(_CONFIG_VARS['srcdir']) # Convert srcdir into an absolute path if it appears necessary. # Normally it is relative to the build directory. However, during # testing, for example, we might be running a non-installed python # from a different directory. if _PYTHON_BUILD and os.name == "posix": base = _PROJECT_BASE try: cwd = os.getcwd() except OSError: cwd = None if (not os.path.isabs(_CONFIG_VARS['srcdir']) and base != cwd): # srcdir is relative and we are not in the same directory # as the executable. Assume executable is in the build # directory and make srcdir absolute. srcdir = os.path.join(base, _CONFIG_VARS['srcdir']) _CONFIG_VARS['srcdir'] = os.path.normpath(srcdir) if sys.platform == 'darwin': kernel_version = os.uname()[2] # Kernel version (8.4.3) major_version = int(kernel_version.split('.')[0]) if major_version < 8: # On Mac OS X before 10.4, check if -arch and -isysroot # are in CFLAGS or LDFLAGS and remove them if they are. # This is needed when building extensions on a 10.3 system # using a universal build of python. for key in ('LDFLAGS', 'BASECFLAGS', # a number of derived variables. These need to be # patched up as well. 'CFLAGS', 'PY_CFLAGS', 'BLDSHARED'): flags = _CONFIG_VARS[key] flags = re.sub('-arch\s+\w+\s', ' ', flags) flags = re.sub('-isysroot [^ \t]*', ' ', flags) _CONFIG_VARS[key] = flags else: # Allow the user to override the architecture flags using # an environment variable. # NOTE: This name was introduced by Apple in OSX 10.5 and # is used by several scripting languages distributed with # that OS release. if 'ARCHFLAGS' in os.environ: arch = os.environ['ARCHFLAGS'] for key in ('LDFLAGS', 'BASECFLAGS', # a number of derived variables. These need to be # patched up as well. 'CFLAGS', 'PY_CFLAGS', 'BLDSHARED'): flags = _CONFIG_VARS[key] flags = re.sub('-arch\s+\w+\s', ' ', flags) flags = flags + ' ' + arch _CONFIG_VARS[key] = flags # If we're on OSX 10.5 or later and the user tries to # compiles an extension using an SDK that is not present # on the current machine it is better to not use an SDK # than to fail. # # The major usecase for this is users using a Python.org # binary installer on OSX 10.6: that installer uses # the 10.4u SDK, but that SDK is not installed by default # when you install Xcode. # CFLAGS = _CONFIG_VARS.get('CFLAGS', '') m = re.search('-isysroot\s+(\S+)', CFLAGS) if m is not None: sdk = m.group(1) if not os.path.exists(sdk): for key in ('LDFLAGS', 'BASECFLAGS', # a number of derived variables. These need to be # patched up as well. 'CFLAGS', 'PY_CFLAGS', 'BLDSHARED'): flags = _CONFIG_VARS[key] flags = re.sub('-isysroot\s+\S+(\s|$)', ' ', flags) _CONFIG_VARS[key] = flags if args: vals = [] for name in args: vals.append(_CONFIG_VARS.get(name)) return vals else: return _CONFIG_VARS
python
def get_config_vars(*args): """With no arguments, return a dictionary of all configuration variables relevant for the current platform. On Unix, this means every variable defined in Python's installed Makefile; On Windows and Mac OS it's a much smaller set. With arguments, return a list of values that result from looking up each argument in the configuration variable dictionary. """ global _CONFIG_VARS if _CONFIG_VARS is None: _CONFIG_VARS = {} # Normalized versions of prefix and exec_prefix are handy to have; # in fact, these are the standard versions used most places in the # distutils2 module. _CONFIG_VARS['prefix'] = _PREFIX _CONFIG_VARS['exec_prefix'] = _EXEC_PREFIX _CONFIG_VARS['py_version'] = _PY_VERSION _CONFIG_VARS['py_version_short'] = _PY_VERSION_SHORT _CONFIG_VARS['py_version_nodot'] = _PY_VERSION[0] + _PY_VERSION[2] _CONFIG_VARS['base'] = _PREFIX _CONFIG_VARS['platbase'] = _EXEC_PREFIX _CONFIG_VARS['projectbase'] = _PROJECT_BASE try: _CONFIG_VARS['abiflags'] = sys.abiflags except AttributeError: # sys.abiflags may not be defined on all platforms. _CONFIG_VARS['abiflags'] = '' if os.name in ('nt', 'os2'): _init_non_posix(_CONFIG_VARS) if os.name == 'posix': _init_posix(_CONFIG_VARS) # Setting 'userbase' is done below the call to the # init function to enable using 'get_config_var' in # the init-function. if sys.version >= '2.6': _CONFIG_VARS['userbase'] = _getuserbase() if 'srcdir' not in _CONFIG_VARS: _CONFIG_VARS['srcdir'] = _PROJECT_BASE else: _CONFIG_VARS['srcdir'] = _safe_realpath(_CONFIG_VARS['srcdir']) # Convert srcdir into an absolute path if it appears necessary. # Normally it is relative to the build directory. However, during # testing, for example, we might be running a non-installed python # from a different directory. if _PYTHON_BUILD and os.name == "posix": base = _PROJECT_BASE try: cwd = os.getcwd() except OSError: cwd = None if (not os.path.isabs(_CONFIG_VARS['srcdir']) and base != cwd): # srcdir is relative and we are not in the same directory # as the executable. Assume executable is in the build # directory and make srcdir absolute. srcdir = os.path.join(base, _CONFIG_VARS['srcdir']) _CONFIG_VARS['srcdir'] = os.path.normpath(srcdir) if sys.platform == 'darwin': kernel_version = os.uname()[2] # Kernel version (8.4.3) major_version = int(kernel_version.split('.')[0]) if major_version < 8: # On Mac OS X before 10.4, check if -arch and -isysroot # are in CFLAGS or LDFLAGS and remove them if they are. # This is needed when building extensions on a 10.3 system # using a universal build of python. for key in ('LDFLAGS', 'BASECFLAGS', # a number of derived variables. These need to be # patched up as well. 'CFLAGS', 'PY_CFLAGS', 'BLDSHARED'): flags = _CONFIG_VARS[key] flags = re.sub('-arch\s+\w+\s', ' ', flags) flags = re.sub('-isysroot [^ \t]*', ' ', flags) _CONFIG_VARS[key] = flags else: # Allow the user to override the architecture flags using # an environment variable. # NOTE: This name was introduced by Apple in OSX 10.5 and # is used by several scripting languages distributed with # that OS release. if 'ARCHFLAGS' in os.environ: arch = os.environ['ARCHFLAGS'] for key in ('LDFLAGS', 'BASECFLAGS', # a number of derived variables. These need to be # patched up as well. 'CFLAGS', 'PY_CFLAGS', 'BLDSHARED'): flags = _CONFIG_VARS[key] flags = re.sub('-arch\s+\w+\s', ' ', flags) flags = flags + ' ' + arch _CONFIG_VARS[key] = flags # If we're on OSX 10.5 or later and the user tries to # compiles an extension using an SDK that is not present # on the current machine it is better to not use an SDK # than to fail. # # The major usecase for this is users using a Python.org # binary installer on OSX 10.6: that installer uses # the 10.4u SDK, but that SDK is not installed by default # when you install Xcode. # CFLAGS = _CONFIG_VARS.get('CFLAGS', '') m = re.search('-isysroot\s+(\S+)', CFLAGS) if m is not None: sdk = m.group(1) if not os.path.exists(sdk): for key in ('LDFLAGS', 'BASECFLAGS', # a number of derived variables. These need to be # patched up as well. 'CFLAGS', 'PY_CFLAGS', 'BLDSHARED'): flags = _CONFIG_VARS[key] flags = re.sub('-isysroot\s+\S+(\s|$)', ' ', flags) _CONFIG_VARS[key] = flags if args: vals = [] for name in args: vals.append(_CONFIG_VARS.get(name)) return vals else: return _CONFIG_VARS
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/vendor/distlib/_backport/sysconfig.py#L463-L591
train
227,165
nerdvegas/rez
src/support/package_utils/set_authors.py
set_authors
def set_authors(data): """Add 'authors' attribute based on repo contributions """ if "authors" in data: return shfile = os.path.join(os.path.dirname(__file__), "get_committers.sh") p = subprocess.Popen(["bash", shfile], stdout=subprocess.PIPE) out, _ = p.communicate() if p.returncode: return authors = out.strip().split('\n') authors = [x.strip() for x in authors] data["authors"] = authors
python
def set_authors(data): """Add 'authors' attribute based on repo contributions """ if "authors" in data: return shfile = os.path.join(os.path.dirname(__file__), "get_committers.sh") p = subprocess.Popen(["bash", shfile], stdout=subprocess.PIPE) out, _ = p.communicate() if p.returncode: return authors = out.strip().split('\n') authors = [x.strip() for x in authors] data["authors"] = authors
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Add 'authors' attribute based on repo contributions
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/support/package_utils/set_authors.py#L5-L21
train
227,166
nerdvegas/rez
src/rez/package_maker__.py
make_package
def make_package(name, path, make_base=None, make_root=None, skip_existing=True, warn_on_skip=True): """Make and install a package. Example: >>> def make_root(variant, path): >>> os.symlink("/foo_payload/misc/python27", "ext") >>> >>> with make_package('foo', '/packages', make_root=make_root) as pkg: >>> pkg.version = '1.0.0' >>> pkg.description = 'does foo things' >>> pkg.requires = ['python-2.7'] Args: name (str): Package name. path (str): Package repository path to install package into. make_base (callable): Function that is used to create the package payload, if applicable. make_root (callable): Function that is used to create the package variant payloads, if applicable. skip_existing (bool): If True, detect if a variant already exists, and skip with a warning message if so. warn_on_skip (bool): If True, print warning when a variant is skipped. Yields: `PackageMaker` object. Note: Both `make_base` and `make_root` are called once per variant install, and have the signature (variant, path). Note: The 'installed_variants' attribute on the `PackageMaker` instance will be appended with variant(s) created by this function, if any. """ maker = PackageMaker(name) yield maker # post-with-block: # package = maker.get_package() cwd = os.getcwd() src_variants = [] # skip those variants that already exist if skip_existing: for variant in package.iter_variants(): variant_ = variant.install(path, dry_run=True) if variant_ is None: src_variants.append(variant) else: maker.skipped_variants.append(variant_) if warn_on_skip: print_warning("Skipping installation: Package variant already " "exists: %s" % variant_.uri) else: src_variants = package.iter_variants() with retain_cwd(): # install the package variant(s) into the filesystem package repo at `path` for variant in src_variants: variant_ = variant.install(path) base = variant_.base if make_base and base: if not os.path.exists(base): os.makedirs(base) os.chdir(base) make_base(variant_, base) root = variant_.root if make_root and root: if not os.path.exists(root): os.makedirs(root) os.chdir(root) make_root(variant_, root) maker.installed_variants.append(variant_)
python
def make_package(name, path, make_base=None, make_root=None, skip_existing=True, warn_on_skip=True): """Make and install a package. Example: >>> def make_root(variant, path): >>> os.symlink("/foo_payload/misc/python27", "ext") >>> >>> with make_package('foo', '/packages', make_root=make_root) as pkg: >>> pkg.version = '1.0.0' >>> pkg.description = 'does foo things' >>> pkg.requires = ['python-2.7'] Args: name (str): Package name. path (str): Package repository path to install package into. make_base (callable): Function that is used to create the package payload, if applicable. make_root (callable): Function that is used to create the package variant payloads, if applicable. skip_existing (bool): If True, detect if a variant already exists, and skip with a warning message if so. warn_on_skip (bool): If True, print warning when a variant is skipped. Yields: `PackageMaker` object. Note: Both `make_base` and `make_root` are called once per variant install, and have the signature (variant, path). Note: The 'installed_variants' attribute on the `PackageMaker` instance will be appended with variant(s) created by this function, if any. """ maker = PackageMaker(name) yield maker # post-with-block: # package = maker.get_package() cwd = os.getcwd() src_variants = [] # skip those variants that already exist if skip_existing: for variant in package.iter_variants(): variant_ = variant.install(path, dry_run=True) if variant_ is None: src_variants.append(variant) else: maker.skipped_variants.append(variant_) if warn_on_skip: print_warning("Skipping installation: Package variant already " "exists: %s" % variant_.uri) else: src_variants = package.iter_variants() with retain_cwd(): # install the package variant(s) into the filesystem package repo at `path` for variant in src_variants: variant_ = variant.install(path) base = variant_.base if make_base and base: if not os.path.exists(base): os.makedirs(base) os.chdir(base) make_base(variant_, base) root = variant_.root if make_root and root: if not os.path.exists(root): os.makedirs(root) os.chdir(root) make_root(variant_, root) maker.installed_variants.append(variant_)
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Make and install a package. Example: >>> def make_root(variant, path): >>> os.symlink("/foo_payload/misc/python27", "ext") >>> >>> with make_package('foo', '/packages', make_root=make_root) as pkg: >>> pkg.version = '1.0.0' >>> pkg.description = 'does foo things' >>> pkg.requires = ['python-2.7'] Args: name (str): Package name. path (str): Package repository path to install package into. make_base (callable): Function that is used to create the package payload, if applicable. make_root (callable): Function that is used to create the package variant payloads, if applicable. skip_existing (bool): If True, detect if a variant already exists, and skip with a warning message if so. warn_on_skip (bool): If True, print warning when a variant is skipped. Yields: `PackageMaker` object. Note: Both `make_base` and `make_root` are called once per variant install, and have the signature (variant, path). Note: The 'installed_variants' attribute on the `PackageMaker` instance will be appended with variant(s) created by this function, if any.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/package_maker__.py#L140-L219
train
227,167
nerdvegas/rez
src/rez/package_maker__.py
PackageMaker.get_package
def get_package(self): """Create the analogous package. Returns: `Package` object. """ # get and validate package data package_data = self._get_data() package_data = package_schema.validate(package_data) # check compatibility with rez version if "requires_rez_version" in package_data: ver = package_data.pop("requires_rez_version") if _rez_Version < ver: raise PackageMetadataError( "Failed reading package definition file: rez version >= %s " "needed (current version is %s)" % (ver, _rez_Version)) # create a 'memory' package repository containing just this package version_str = package_data.get("version") or "_NO_VERSION" repo_data = {self.name: {version_str: package_data}} repo = create_memory_package_repository(repo_data) # retrieve the package from the new repository family_resource = repo.get_package_family(self.name) it = repo.iter_packages(family_resource) package_resource = it.next() package = self.package_cls(package_resource) # revalidate the package for extra measure package.validate_data() return package
python
def get_package(self): """Create the analogous package. Returns: `Package` object. """ # get and validate package data package_data = self._get_data() package_data = package_schema.validate(package_data) # check compatibility with rez version if "requires_rez_version" in package_data: ver = package_data.pop("requires_rez_version") if _rez_Version < ver: raise PackageMetadataError( "Failed reading package definition file: rez version >= %s " "needed (current version is %s)" % (ver, _rez_Version)) # create a 'memory' package repository containing just this package version_str = package_data.get("version") or "_NO_VERSION" repo_data = {self.name: {version_str: package_data}} repo = create_memory_package_repository(repo_data) # retrieve the package from the new repository family_resource = repo.get_package_family(self.name) it = repo.iter_packages(family_resource) package_resource = it.next() package = self.package_cls(package_resource) # revalidate the package for extra measure package.validate_data() return package
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Create the analogous package. Returns: `Package` object.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/package_maker__.py#L93-L126
train
227,168
nerdvegas/rez
src/rez/vendor/pyparsing/pyparsing.py
getTokensEndLoc
def getTokensEndLoc(): """Method to be called from within a parse action to determine the end location of the parsed tokens.""" import inspect fstack = inspect.stack() try: # search up the stack (through intervening argument normalizers) for correct calling routine for f in fstack[2:]: if f[3] == "_parseNoCache": endloc = f[0].f_locals["loc"] return endloc else: raise ParseFatalException("incorrect usage of getTokensEndLoc - may only be called from within a parse action") finally: del fstack
python
def getTokensEndLoc(): """Method to be called from within a parse action to determine the end location of the parsed tokens.""" import inspect fstack = inspect.stack() try: # search up the stack (through intervening argument normalizers) for correct calling routine for f in fstack[2:]: if f[3] == "_parseNoCache": endloc = f[0].f_locals["loc"] return endloc else: raise ParseFatalException("incorrect usage of getTokensEndLoc - may only be called from within a parse action") finally: del fstack
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/vendor/pyparsing/pyparsing.py#L3350-L3364
train
227,169
nerdvegas/rez
src/rez/utils/schema.py
schema_keys
def schema_keys(schema): """Get the string values of keys in a dict-based schema. Non-string keys are ignored. Returns: Set of string keys of a schema which is in the form (eg): schema = Schema({Required("foo"): int, Optional("bah"): basestring}) """ def _get_leaf(value): if isinstance(value, Schema): return _get_leaf(value._schema) return value keys = set() dict_ = schema._schema assert isinstance(dict_, dict) for key in dict_.iterkeys(): key_ = _get_leaf(key) if isinstance(key_, basestring): keys.add(key_) return keys
python
def schema_keys(schema): """Get the string values of keys in a dict-based schema. Non-string keys are ignored. Returns: Set of string keys of a schema which is in the form (eg): schema = Schema({Required("foo"): int, Optional("bah"): basestring}) """ def _get_leaf(value): if isinstance(value, Schema): return _get_leaf(value._schema) return value keys = set() dict_ = schema._schema assert isinstance(dict_, dict) for key in dict_.iterkeys(): key_ = _get_leaf(key) if isinstance(key_, basestring): keys.add(key_) return keys
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/utils/schema.py#L12-L37
train
227,170
nerdvegas/rez
src/rez/utils/schema.py
dict_to_schema
def dict_to_schema(schema_dict, required, allow_custom_keys=True, modifier=None): """Convert a dict of Schemas into a Schema. Args: required (bool): Whether to make schema keys optional or required. allow_custom_keys (bool, optional): If True, creates a schema that allows custom items in dicts. modifier (callable): Functor to apply to dict values - it is applied via `Schema.Use`. Returns: A `Schema` object. """ if modifier: modifier = Use(modifier) def _to(value): if isinstance(value, dict): d = {} for k, v in value.iteritems(): if isinstance(k, basestring): k = Required(k) if required else Optional(k) d[k] = _to(v) if allow_custom_keys: d[Optional(basestring)] = modifier or object schema = Schema(d) elif modifier: schema = And(value, modifier) else: schema = value return schema return _to(schema_dict)
python
def dict_to_schema(schema_dict, required, allow_custom_keys=True, modifier=None): """Convert a dict of Schemas into a Schema. Args: required (bool): Whether to make schema keys optional or required. allow_custom_keys (bool, optional): If True, creates a schema that allows custom items in dicts. modifier (callable): Functor to apply to dict values - it is applied via `Schema.Use`. Returns: A `Schema` object. """ if modifier: modifier = Use(modifier) def _to(value): if isinstance(value, dict): d = {} for k, v in value.iteritems(): if isinstance(k, basestring): k = Required(k) if required else Optional(k) d[k] = _to(v) if allow_custom_keys: d[Optional(basestring)] = modifier or object schema = Schema(d) elif modifier: schema = And(value, modifier) else: schema = value return schema return _to(schema_dict)
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/utils/schema.py#L40-L72
train
227,171
nerdvegas/rez
src/rezgui/widgets/ContextTableWidget.py
ContextTableWidget.enter_diff_mode
def enter_diff_mode(self, context_model=None): """Enter diff mode. Args: context_model (`ContextModel`): Context to diff against. If None, a copy of the current context is used. """ assert not self.diff_mode self.diff_mode = True if context_model is None: self.diff_from_source = True self.diff_context_model = self.context_model.copy() else: self.diff_from_source = False self.diff_context_model = context_model self.clear() self.setColumnCount(5) self.refresh()
python
def enter_diff_mode(self, context_model=None): """Enter diff mode. Args: context_model (`ContextModel`): Context to diff against. If None, a copy of the current context is used. """ assert not self.diff_mode self.diff_mode = True if context_model is None: self.diff_from_source = True self.diff_context_model = self.context_model.copy() else: self.diff_from_source = False self.diff_context_model = context_model self.clear() self.setColumnCount(5) self.refresh()
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rezgui/widgets/ContextTableWidget.py#L349-L368
train
227,172
nerdvegas/rez
src/rezgui/widgets/ContextTableWidget.py
ContextTableWidget.leave_diff_mode
def leave_diff_mode(self): """Leave diff mode.""" assert self.diff_mode self.diff_mode = False self.diff_context_model = None self.diff_from_source = False self.setColumnCount(2) self.refresh()
python
def leave_diff_mode(self): """Leave diff mode.""" assert self.diff_mode self.diff_mode = False self.diff_context_model = None self.diff_from_source = False self.setColumnCount(2) self.refresh()
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rezgui/widgets/ContextTableWidget.py#L370-L377
train
227,173
nerdvegas/rez
src/rezgui/widgets/ContextTableWidget.py
ContextTableWidget.get_title
def get_title(self): """Returns a string suitable for titling a window containing this table.""" def _title(context_model): context = context_model.context() if context is None: return "new context*" title = os.path.basename(context.load_path) if context.load_path \ else "new context" if context_model.is_modified(): title += '*' return title if self.diff_mode: diff_title = _title(self.diff_context_model) if self.diff_from_source: diff_title += "'" return "%s %s %s" % (_title(self.context_model), self.short_double_arrow, diff_title) else: return _title(self.context_model)
python
def get_title(self): """Returns a string suitable for titling a window containing this table.""" def _title(context_model): context = context_model.context() if context is None: return "new context*" title = os.path.basename(context.load_path) if context.load_path \ else "new context" if context_model.is_modified(): title += '*' return title if self.diff_mode: diff_title = _title(self.diff_context_model) if self.diff_from_source: diff_title += "'" return "%s %s %s" % (_title(self.context_model), self.short_double_arrow, diff_title) else: return _title(self.context_model)
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Returns a string suitable for titling a window containing this table.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rezgui/widgets/ContextTableWidget.py#L390-L409
train
227,174
nerdvegas/rez
src/rez/utils/colorize.py
_color_level
def _color_level(str_, level): """ Return the string wrapped with the appropriate styling for the message level. The styling will be determined based on the rez configuration. Args: str_ (str): The string to be wrapped. level (str): The message level. Should be one of 'critical', 'error', 'warning', 'info' or 'debug'. Returns: str: The string styled with the appropriate escape sequences. """ fore_color, back_color, styles = _get_style_from_config(level) return _color(str_, fore_color, back_color, styles)
python
def _color_level(str_, level): """ Return the string wrapped with the appropriate styling for the message level. The styling will be determined based on the rez configuration. Args: str_ (str): The string to be wrapped. level (str): The message level. Should be one of 'critical', 'error', 'warning', 'info' or 'debug'. Returns: str: The string styled with the appropriate escape sequences. """ fore_color, back_color, styles = _get_style_from_config(level) return _color(str_, fore_color, back_color, styles)
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/utils/colorize.py#L160-L173
train
227,175
nerdvegas/rez
src/rez/utils/colorize.py
_color
def _color(str_, fore_color=None, back_color=None, styles=None): """ Return the string wrapped with the appropriate styling escape sequences. Args: str_ (str): The string to be wrapped. fore_color (str, optional): Any foreground color supported by the `Colorama`_ module. back_color (str, optional): Any background color supported by the `Colorama`_ module. styles (list of str, optional): Any styles supported by the `Colorama`_ module. Returns: str: The string styled with the appropriate escape sequences. .. _Colorama: https://pypi.python.org/pypi/colorama """ # TODO: Colorama is documented to work on Windows and trivial test case # proves this to be the case, but it doesn't work in Rez. If the initialise # is called in sec/rez/__init__.py then it does work, however as discussed # in the following comment this is not always desirable. So until we can # work out why we forcibly turn it off. if not config.get("color_enabled", False) or platform_.name == "windows": return str_ # lazily init colorama. This is important - we don't want to init at startup, # because colorama prints a RESET_ALL character atexit. This in turn adds # unexpected output when capturing the output of a command run in a # ResolvedContext, for example. _init_colorama() colored = "" if not styles: styles = [] if fore_color: colored += getattr(colorama.Fore, fore_color.upper(), '') if back_color: colored += getattr(colorama.Back, back_color.upper(), '') for style in styles: colored += getattr(colorama.Style, style.upper(), '') return colored + str_ + colorama.Style.RESET_ALL
python
def _color(str_, fore_color=None, back_color=None, styles=None): """ Return the string wrapped with the appropriate styling escape sequences. Args: str_ (str): The string to be wrapped. fore_color (str, optional): Any foreground color supported by the `Colorama`_ module. back_color (str, optional): Any background color supported by the `Colorama`_ module. styles (list of str, optional): Any styles supported by the `Colorama`_ module. Returns: str: The string styled with the appropriate escape sequences. .. _Colorama: https://pypi.python.org/pypi/colorama """ # TODO: Colorama is documented to work on Windows and trivial test case # proves this to be the case, but it doesn't work in Rez. If the initialise # is called in sec/rez/__init__.py then it does work, however as discussed # in the following comment this is not always desirable. So until we can # work out why we forcibly turn it off. if not config.get("color_enabled", False) or platform_.name == "windows": return str_ # lazily init colorama. This is important - we don't want to init at startup, # because colorama prints a RESET_ALL character atexit. This in turn adds # unexpected output when capturing the output of a command run in a # ResolvedContext, for example. _init_colorama() colored = "" if not styles: styles = [] if fore_color: colored += getattr(colorama.Fore, fore_color.upper(), '') if back_color: colored += getattr(colorama.Back, back_color.upper(), '') for style in styles: colored += getattr(colorama.Style, style.upper(), '') return colored + str_ + colorama.Style.RESET_ALL
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/utils/colorize.py#L176-L219
train
227,176
nerdvegas/rez
src/rez/utils/sourcecode.py
late
def late(): """Used by functions in package.py that are evaluated lazily. The term 'late' refers to the fact these package attributes are evaluated late, ie when the attribute is queried for the first time. If you want to implement a package.py attribute as a function, you MUST use this decorator - otherwise it is understood that you want your attribute to be a function, not the return value of that function. """ from rez.package_resources_ import package_rex_keys def decorated(fn): # this is done here rather than in standard schema validation because # the latter causes a very obfuscated error message if fn.__name__ in package_rex_keys: raise ValueError("Cannot use @late decorator on function '%s'" % fn.__name__) setattr(fn, "_late", True) _add_decorator(fn, "late") return fn return decorated
python
def late(): """Used by functions in package.py that are evaluated lazily. The term 'late' refers to the fact these package attributes are evaluated late, ie when the attribute is queried for the first time. If you want to implement a package.py attribute as a function, you MUST use this decorator - otherwise it is understood that you want your attribute to be a function, not the return value of that function. """ from rez.package_resources_ import package_rex_keys def decorated(fn): # this is done here rather than in standard schema validation because # the latter causes a very obfuscated error message if fn.__name__ in package_rex_keys: raise ValueError("Cannot use @late decorator on function '%s'" % fn.__name__) setattr(fn, "_late", True) _add_decorator(fn, "late") return fn return decorated
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Used by functions in package.py that are evaluated lazily. The term 'late' refers to the fact these package attributes are evaluated late, ie when the attribute is queried for the first time. If you want to implement a package.py attribute as a function, you MUST use this decorator - otherwise it is understood that you want your attribute to be a function, not the return value of that function.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/utils/sourcecode.py#L25-L49
train
227,177
nerdvegas/rez
src/rez/utils/sourcecode.py
include
def include(module_name, *module_names): """Used by functions in package.py to have access to named modules. See the 'package_definition_python_path' config setting for more info. """ def decorated(fn): _add_decorator(fn, "include", nargs=[module_name] + list(module_names)) return fn return decorated
python
def include(module_name, *module_names): """Used by functions in package.py to have access to named modules. See the 'package_definition_python_path' config setting for more info. """ def decorated(fn): _add_decorator(fn, "include", nargs=[module_name] + list(module_names)) return fn return decorated
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/utils/sourcecode.py#L52-L61
train
227,178
nerdvegas/rez
src/rez/packages_.py
iter_package_families
def iter_package_families(paths=None): """Iterate over package families, in no particular order. Note that multiple package families with the same name can be returned. Unlike packages, families later in the searchpath are not hidden by earlier families. Args: paths (list of str, optional): paths to search for package families, defaults to `config.packages_path`. Returns: `PackageFamily` iterator. """ for path in (paths or config.packages_path): repo = package_repository_manager.get_repository(path) for resource in repo.iter_package_families(): yield PackageFamily(resource)
python
def iter_package_families(paths=None): """Iterate over package families, in no particular order. Note that multiple package families with the same name can be returned. Unlike packages, families later in the searchpath are not hidden by earlier families. Args: paths (list of str, optional): paths to search for package families, defaults to `config.packages_path`. Returns: `PackageFamily` iterator. """ for path in (paths or config.packages_path): repo = package_repository_manager.get_repository(path) for resource in repo.iter_package_families(): yield PackageFamily(resource)
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Iterate over package families, in no particular order. Note that multiple package families with the same name can be returned. Unlike packages, families later in the searchpath are not hidden by earlier families. Args: paths (list of str, optional): paths to search for package families, defaults to `config.packages_path`. Returns: `PackageFamily` iterator.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L465-L482
train
227,179
nerdvegas/rez
src/rez/packages_.py
iter_packages
def iter_packages(name, range_=None, paths=None): """Iterate over `Package` instances, in no particular order. Packages of the same name and version earlier in the search path take precedence - equivalent packages later in the paths are ignored. Packages are not returned in any specific order. Args: name (str): Name of the package, eg 'maya'. range_ (VersionRange or str): If provided, limits the versions returned to those in `range_`. paths (list of str, optional): paths to search for packages, defaults to `config.packages_path`. Returns: `Package` iterator. """ entries = _get_families(name, paths) seen = set() for repo, family_resource in entries: for package_resource in repo.iter_packages(family_resource): key = (package_resource.name, package_resource.version) if key in seen: continue seen.add(key) if range_: if isinstance(range_, basestring): range_ = VersionRange(range_) if package_resource.version not in range_: continue yield Package(package_resource)
python
def iter_packages(name, range_=None, paths=None): """Iterate over `Package` instances, in no particular order. Packages of the same name and version earlier in the search path take precedence - equivalent packages later in the paths are ignored. Packages are not returned in any specific order. Args: name (str): Name of the package, eg 'maya'. range_ (VersionRange or str): If provided, limits the versions returned to those in `range_`. paths (list of str, optional): paths to search for packages, defaults to `config.packages_path`. Returns: `Package` iterator. """ entries = _get_families(name, paths) seen = set() for repo, family_resource in entries: for package_resource in repo.iter_packages(family_resource): key = (package_resource.name, package_resource.version) if key in seen: continue seen.add(key) if range_: if isinstance(range_, basestring): range_ = VersionRange(range_) if package_resource.version not in range_: continue yield Package(package_resource)
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L485-L518
train
227,180
nerdvegas/rez
src/rez/packages_.py
get_package
def get_package(name, version, paths=None): """Get an exact version of a package. Args: name (str): Name of the package, eg 'maya'. version (Version or str): Version of the package, eg '1.0.0' paths (list of str, optional): paths to search for package, defaults to `config.packages_path`. Returns: `Package` object, or None if the package was not found. """ if isinstance(version, basestring): range_ = VersionRange("==%s" % version) else: range_ = VersionRange.from_version(version, "==") it = iter_packages(name, range_, paths) try: return it.next() except StopIteration: return None
python
def get_package(name, version, paths=None): """Get an exact version of a package. Args: name (str): Name of the package, eg 'maya'. version (Version or str): Version of the package, eg '1.0.0' paths (list of str, optional): paths to search for package, defaults to `config.packages_path`. Returns: `Package` object, or None if the package was not found. """ if isinstance(version, basestring): range_ = VersionRange("==%s" % version) else: range_ = VersionRange.from_version(version, "==") it = iter_packages(name, range_, paths) try: return it.next() except StopIteration: return None
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L521-L542
train
227,181
nerdvegas/rez
src/rez/packages_.py
get_package_from_string
def get_package_from_string(txt, paths=None): """Get a package given a string. Args: txt (str): String such as 'foo', 'bah-1.3'. paths (list of str, optional): paths to search for package, defaults to `config.packages_path`. Returns: `Package` instance, or None if no package was found. """ o = VersionedObject(txt) return get_package(o.name, o.version, paths=paths)
python
def get_package_from_string(txt, paths=None): """Get a package given a string. Args: txt (str): String such as 'foo', 'bah-1.3'. paths (list of str, optional): paths to search for package, defaults to `config.packages_path`. Returns: `Package` instance, or None if no package was found. """ o = VersionedObject(txt) return get_package(o.name, o.version, paths=paths)
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L563-L575
train
227,182
nerdvegas/rez
src/rez/packages_.py
get_developer_package
def get_developer_package(path, format=None): """Create a developer package. Args: path (str): Path to dir containing package definition file. format (str): Package definition file format, detected if None. Returns: `DeveloperPackage`. """ from rez.developer_package import DeveloperPackage return DeveloperPackage.from_path(path, format=format)
python
def get_developer_package(path, format=None): """Create a developer package. Args: path (str): Path to dir containing package definition file. format (str): Package definition file format, detected if None. Returns: `DeveloperPackage`. """ from rez.developer_package import DeveloperPackage return DeveloperPackage.from_path(path, format=format)
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L578-L589
train
227,183
nerdvegas/rez
src/rez/packages_.py
create_package
def create_package(name, data, package_cls=None): """Create a package given package data. Args: name (str): Package name. data (dict): Package data. Must conform to `package_maker.package_schema`. Returns: `Package` object. """ from rez.package_maker__ import PackageMaker maker = PackageMaker(name, data, package_cls=package_cls) return maker.get_package()
python
def create_package(name, data, package_cls=None): """Create a package given package data. Args: name (str): Package name. data (dict): Package data. Must conform to `package_maker.package_schema`. Returns: `Package` object. """ from rez.package_maker__ import PackageMaker maker = PackageMaker(name, data, package_cls=package_cls) return maker.get_package()
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L592-L604
train
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nerdvegas/rez
src/rez/packages_.py
get_last_release_time
def get_last_release_time(name, paths=None): """Returns the most recent time this package was released. Note that releasing a variant into an already-released package is also considered a package release. Returns: int: Epoch time of last package release, or zero if this cannot be determined. """ entries = _get_families(name, paths) max_time = 0 for repo, family_resource in entries: time_ = repo.get_last_release_time(family_resource) if time_ == 0: return 0 max_time = max(max_time, time_) return max_time
python
def get_last_release_time(name, paths=None): """Returns the most recent time this package was released. Note that releasing a variant into an already-released package is also considered a package release. Returns: int: Epoch time of last package release, or zero if this cannot be determined. """ entries = _get_families(name, paths) max_time = 0 for repo, family_resource in entries: time_ = repo.get_last_release_time(family_resource) if time_ == 0: return 0 max_time = max(max_time, time_) return max_time
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Returns the most recent time this package was released. Note that releasing a variant into an already-released package is also considered a package release. Returns: int: Epoch time of last package release, or zero if this cannot be determined.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L628-L646
train
227,185
nerdvegas/rez
src/rez/packages_.py
get_completions
def get_completions(prefix, paths=None, family_only=False): """Get autocompletion options given a prefix string. Example: >>> get_completions("may") set(["maya", "maya_utils"]) >>> get_completions("maya-") set(["maya-2013.1", "maya-2015.0.sp1"]) Args: prefix (str): Prefix to match. paths (list of str): paths to search for packages, defaults to `config.packages_path`. family_only (bool): If True, only match package names, do not include version component. Returns: Set of strings, may be empty. """ op = None if prefix: if prefix[0] in ('!', '~'): if family_only: return set() op = prefix[0] prefix = prefix[1:] fam = None for ch in ('-', '@', '#'): if ch in prefix: if family_only: return set() fam = prefix.split(ch)[0] break words = set() if not fam: words = set(x.name for x in iter_package_families(paths=paths) if x.name.startswith(prefix)) if len(words) == 1: fam = iter(words).next() if family_only: return words if fam: it = iter_packages(fam, paths=paths) words.update(x.qualified_name for x in it if x.qualified_name.startswith(prefix)) if op: words = set(op + x for x in words) return words
python
def get_completions(prefix, paths=None, family_only=False): """Get autocompletion options given a prefix string. Example: >>> get_completions("may") set(["maya", "maya_utils"]) >>> get_completions("maya-") set(["maya-2013.1", "maya-2015.0.sp1"]) Args: prefix (str): Prefix to match. paths (list of str): paths to search for packages, defaults to `config.packages_path`. family_only (bool): If True, only match package names, do not include version component. Returns: Set of strings, may be empty. """ op = None if prefix: if prefix[0] in ('!', '~'): if family_only: return set() op = prefix[0] prefix = prefix[1:] fam = None for ch in ('-', '@', '#'): if ch in prefix: if family_only: return set() fam = prefix.split(ch)[0] break words = set() if not fam: words = set(x.name for x in iter_package_families(paths=paths) if x.name.startswith(prefix)) if len(words) == 1: fam = iter(words).next() if family_only: return words if fam: it = iter_packages(fam, paths=paths) words.update(x.qualified_name for x in it if x.qualified_name.startswith(prefix)) if op: words = set(op + x for x in words) return words
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Get autocompletion options given a prefix string. Example: >>> get_completions("may") set(["maya", "maya_utils"]) >>> get_completions("maya-") set(["maya-2013.1", "maya-2015.0.sp1"]) Args: prefix (str): Prefix to match. paths (list of str): paths to search for packages, defaults to `config.packages_path`. family_only (bool): If True, only match package names, do not include version component. Returns: Set of strings, may be empty.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L649-L702
train
227,186
nerdvegas/rez
src/rez/packages_.py
PackageFamily.iter_packages
def iter_packages(self): """Iterate over the packages within this family, in no particular order. Returns: `Package` iterator. """ for package in self.repository.iter_packages(self.resource): yield Package(package)
python
def iter_packages(self): """Iterate over the packages within this family, in no particular order. Returns: `Package` iterator. """ for package in self.repository.iter_packages(self.resource): yield Package(package)
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L55-L62
train
227,187
nerdvegas/rez
src/rez/packages_.py
PackageBaseResourceWrapper.is_local
def is_local(self): """Returns True if the package is in the local package repository""" local_repo = package_repository_manager.get_repository( self.config.local_packages_path) return (self.resource._repository.uid == local_repo.uid)
python
def is_local(self): """Returns True if the package is in the local package repository""" local_repo = package_repository_manager.get_repository( self.config.local_packages_path) return (self.resource._repository.uid == local_repo.uid)
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L99-L103
train
227,188
nerdvegas/rez
src/rez/packages_.py
PackageBaseResourceWrapper.print_info
def print_info(self, buf=None, format_=FileFormat.yaml, skip_attributes=None, include_release=False): """Print the contents of the package. Args: buf (file-like object): Stream to write to. format_ (`FileFormat`): Format to write in. skip_attributes (list of str): List of attributes to not print. include_release (bool): If True, include release-related attributes, such as 'timestamp' and 'changelog' """ data = self.validated_data().copy() # config is a special case. We only really want to show any config settings # that were in the package.py, not the entire Config contents that get # grafted onto the Package/Variant instance. However Variant has an empy # 'data' dict property, since it forwards data from its parent package. data.pop("config", None) if self.config: if isinstance(self, Package): config_dict = self.data.get("config") else: config_dict = self.parent.data.get("config") data["config"] = config_dict if not include_release: skip_attributes = list(skip_attributes or []) + list(package_release_keys) buf = buf or sys.stdout dump_package_data(data, buf=buf, format_=format_, skip_attributes=skip_attributes)
python
def print_info(self, buf=None, format_=FileFormat.yaml, skip_attributes=None, include_release=False): """Print the contents of the package. Args: buf (file-like object): Stream to write to. format_ (`FileFormat`): Format to write in. skip_attributes (list of str): List of attributes to not print. include_release (bool): If True, include release-related attributes, such as 'timestamp' and 'changelog' """ data = self.validated_data().copy() # config is a special case. We only really want to show any config settings # that were in the package.py, not the entire Config contents that get # grafted onto the Package/Variant instance. However Variant has an empy # 'data' dict property, since it forwards data from its parent package. data.pop("config", None) if self.config: if isinstance(self, Package): config_dict = self.data.get("config") else: config_dict = self.parent.data.get("config") data["config"] = config_dict if not include_release: skip_attributes = list(skip_attributes or []) + list(package_release_keys) buf = buf or sys.stdout dump_package_data(data, buf=buf, format_=format_, skip_attributes=skip_attributes)
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Print the contents of the package. Args: buf (file-like object): Stream to write to. format_ (`FileFormat`): Format to write in. skip_attributes (list of str): List of attributes to not print. include_release (bool): If True, include release-related attributes, such as 'timestamp' and 'changelog'
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L105-L135
train
227,189
nerdvegas/rez
src/rez/packages_.py
Package.qualified_name
def qualified_name(self): """Get the qualified name of the package. Returns: str: Name of the package with version, eg "maya-2016.1". """ o = VersionedObject.construct(self.name, self.version) return str(o)
python
def qualified_name(self): """Get the qualified name of the package. Returns: str: Name of the package with version, eg "maya-2016.1". """ o = VersionedObject.construct(self.name, self.version) return str(o)
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Get the qualified name of the package. Returns: str: Name of the package with version, eg "maya-2016.1".
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L218-L225
train
227,190
nerdvegas/rez
src/rez/packages_.py
Package.parent
def parent(self): """Get the parent package family. Returns: `PackageFamily`. """ family = self.repository.get_parent_package_family(self.resource) return PackageFamily(family) if family else None
python
def parent(self): """Get the parent package family. Returns: `PackageFamily`. """ family = self.repository.get_parent_package_family(self.resource) return PackageFamily(family) if family else None
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L228-L235
train
227,191
nerdvegas/rez
src/rez/packages_.py
Package.iter_variants
def iter_variants(self): """Iterate over the variants within this package, in index order. Returns: `Variant` iterator. """ for variant in self.repository.iter_variants(self.resource): yield Variant(variant, context=self.context, parent=self)
python
def iter_variants(self): """Iterate over the variants within this package, in index order. Returns: `Variant` iterator. """ for variant in self.repository.iter_variants(self.resource): yield Variant(variant, context=self.context, parent=self)
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Iterate over the variants within this package, in index order. Returns: `Variant` iterator.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L250-L257
train
227,192
nerdvegas/rez
src/rez/packages_.py
Package.get_variant
def get_variant(self, index=None): """Get the variant with the associated index. Returns: `Variant` object, or None if no variant with the given index exists. """ for variant in self.iter_variants(): if variant.index == index: return variant
python
def get_variant(self, index=None): """Get the variant with the associated index. Returns: `Variant` object, or None if no variant with the given index exists. """ for variant in self.iter_variants(): if variant.index == index: return variant
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L259-L267
train
227,193
nerdvegas/rez
src/rez/packages_.py
Variant.qualified_name
def qualified_name(self): """Get the qualified name of the variant. Returns: str: Name of the variant with version and index, eg "maya-2016.1[1]". """ idxstr = '' if self.index is None else str(self.index) return "%s[%s]" % (self.qualified_package_name, idxstr)
python
def qualified_name(self): """Get the qualified name of the variant. Returns: str: Name of the variant with version and index, eg "maya-2016.1[1]". """ idxstr = '' if self.index is None else str(self.index) return "%s[%s]" % (self.qualified_package_name, idxstr)
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Get the qualified name of the variant. Returns: str: Name of the variant with version and index, eg "maya-2016.1[1]".
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L305-L312
train
227,194
nerdvegas/rez
src/rez/packages_.py
Variant.parent
def parent(self): """Get the parent package. Returns: `Package`. """ if self._parent is not None: return self._parent try: package = self.repository.get_parent_package(self.resource) self._parent = Package(package, context=self.context) except AttributeError as e: reraise(e, ValueError) return self._parent
python
def parent(self): """Get the parent package. Returns: `Package`. """ if self._parent is not None: return self._parent try: package = self.repository.get_parent_package(self.resource) self._parent = Package(package, context=self.context) except AttributeError as e: reraise(e, ValueError) return self._parent
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Get the parent package. Returns: `Package`.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L315-L330
train
227,195
nerdvegas/rez
src/rez/packages_.py
Variant.get_requires
def get_requires(self, build_requires=False, private_build_requires=False): """Get the requirements of the variant. Args: build_requires (bool): If True, include build requirements. private_build_requires (bool): If True, include private build requirements. Returns: List of `Requirement` objects. """ requires = self.requires or [] if build_requires: requires = requires + (self.build_requires or []) if private_build_requires: requires = requires + (self.private_build_requires or []) return requires
python
def get_requires(self, build_requires=False, private_build_requires=False): """Get the requirements of the variant. Args: build_requires (bool): If True, include build requirements. private_build_requires (bool): If True, include private build requirements. Returns: List of `Requirement` objects. """ requires = self.requires or [] if build_requires: requires = requires + (self.build_requires or []) if private_build_requires: requires = requires + (self.private_build_requires or []) return requires
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L358-L376
train
227,196
nerdvegas/rez
src/rez/packages_.py
Variant.install
def install(self, path, dry_run=False, overrides=None): """Install this variant into another package repository. If the package already exists, this variant will be correctly merged into the package. If the variant already exists in this package, the existing variant is returned. Args: path (str): Path to destination package repository. dry_run (bool): If True, do not actually install the variant. In this mode, a `Variant` instance is only returned if the equivalent variant already exists in this repository; otherwise, None is returned. overrides (dict): Use this to change or add attributes to the installed variant. Returns: `Variant` object - the (existing or newly created) variant in the specified repository. If `dry_run` is True, None may be returned. """ repo = package_repository_manager.get_repository(path) resource = repo.install_variant(self.resource, dry_run=dry_run, overrides=overrides) if resource is None: return None elif resource is self.resource: return self else: return Variant(resource)
python
def install(self, path, dry_run=False, overrides=None): """Install this variant into another package repository. If the package already exists, this variant will be correctly merged into the package. If the variant already exists in this package, the existing variant is returned. Args: path (str): Path to destination package repository. dry_run (bool): If True, do not actually install the variant. In this mode, a `Variant` instance is only returned if the equivalent variant already exists in this repository; otherwise, None is returned. overrides (dict): Use this to change or add attributes to the installed variant. Returns: `Variant` object - the (existing or newly created) variant in the specified repository. If `dry_run` is True, None may be returned. """ repo = package_repository_manager.get_repository(path) resource = repo.install_variant(self.resource, dry_run=dry_run, overrides=overrides) if resource is None: return None elif resource is self.resource: return self else: return Variant(resource)
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/packages_.py#L378-L407
train
227,197
nerdvegas/rez
src/rez/serialise.py
open_file_for_write
def open_file_for_write(filepath, mode=None): """Writes both to given filepath, and tmpdir location. This is to get around the problem with some NFS's where immediately reading a file that has just been written is problematic. Instead, any files that we write, we also write to /tmp, and reads of these files are redirected there. Args: filepath (str): File to write. mode (int): Same mode arg as you would pass to `os.chmod`. Yields: File-like object. """ stream = StringIO() yield stream content = stream.getvalue() filepath = os.path.realpath(filepath) tmpdir = tmpdir_manager.mkdtemp() cache_filepath = os.path.join(tmpdir, os.path.basename(filepath)) debug_print("Writing to %s (local cache of %s)", cache_filepath, filepath) with atomic_write(filepath, overwrite=True) as f: f.write(content) if mode is not None: os.chmod(filepath, mode) with open(cache_filepath, 'w') as f: f.write(content) file_cache[filepath] = cache_filepath
python
def open_file_for_write(filepath, mode=None): """Writes both to given filepath, and tmpdir location. This is to get around the problem with some NFS's where immediately reading a file that has just been written is problematic. Instead, any files that we write, we also write to /tmp, and reads of these files are redirected there. Args: filepath (str): File to write. mode (int): Same mode arg as you would pass to `os.chmod`. Yields: File-like object. """ stream = StringIO() yield stream content = stream.getvalue() filepath = os.path.realpath(filepath) tmpdir = tmpdir_manager.mkdtemp() cache_filepath = os.path.join(tmpdir, os.path.basename(filepath)) debug_print("Writing to %s (local cache of %s)", cache_filepath, filepath) with atomic_write(filepath, overwrite=True) as f: f.write(content) if mode is not None: os.chmod(filepath, mode) with open(cache_filepath, 'w') as f: f.write(content) file_cache[filepath] = cache_filepath
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Writes both to given filepath, and tmpdir location. This is to get around the problem with some NFS's where immediately reading a file that has just been written is problematic. Instead, any files that we write, we also write to /tmp, and reads of these files are redirected there. Args: filepath (str): File to write. mode (int): Same mode arg as you would pass to `os.chmod`. Yields: File-like object.
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1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/serialise.py#L43-L76
train
227,198
nerdvegas/rez
src/rez/serialise.py
load_py
def load_py(stream, filepath=None): """Load python-formatted data from a stream. Args: stream (file-like object). Returns: dict. """ with add_sys_paths(config.package_definition_build_python_paths): return _load_py(stream, filepath=filepath)
python
def load_py(stream, filepath=None): """Load python-formatted data from a stream. Args: stream (file-like object). Returns: dict. """ with add_sys_paths(config.package_definition_build_python_paths): return _load_py(stream, filepath=filepath)
[ "def", "load_py", "(", "stream", ",", "filepath", "=", "None", ")", ":", "with", "add_sys_paths", "(", "config", ".", "package_definition_build_python_paths", ")", ":", "return", "_load_py", "(", "stream", ",", "filepath", "=", "filepath", ")" ]
Load python-formatted data from a stream. Args: stream (file-like object). Returns: dict.
[ "Load", "python", "-", "formatted", "data", "from", "a", "stream", "." ]
1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7
https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/serialise.py#L193-L203
train
227,199