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senseobservationsystems/commonsense-python-lib | senseapi.py | SenseAPI.DataProcessorsGet | def DataProcessorsGet(self, parameters):
"""
List the users data processors.
@param parameters (dictonary) - Dictionary containing the parameters of the request.
@return (bool) - Boolean indicating whether this call was successful.
... | python | def DataProcessorsGet(self, parameters):
"""
List the users data processors.
@param parameters (dictonary) - Dictionary containing the parameters of the request.
@return (bool) - Boolean indicating whether this call was successful.
... | [
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senseobservationsystems/commonsense-python-lib | senseapi.py | SenseAPI.DataProcessorsDelete | def DataProcessorsDelete(self, dataProcessorId):
"""
Delete a data processor in CommonSense.
@param dataProcessorId - The id of the data processor that will be deleted.
@return (bool) - Boolean indicating whether GroupsP... | python | def DataProcessorsDelete(self, dataProcessorId):
"""
Delete a data processor in CommonSense.
@param dataProcessorId - The id of the data processor that will be deleted.
@return (bool) - Boolean indicating whether GroupsP... | [
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pysal/spglm | spglm/varfuncs.py | NegativeBinomial.deriv | def deriv(self, mu):
"""
Derivative of the negative binomial variance function.
"""
p = self._clean(mu)
return 1 + 2 * self.alpha * p | python | def deriv(self, mu):
"""
Derivative of the negative binomial variance function.
"""
p = self._clean(mu)
return 1 + 2 * self.alpha * p | [
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pysal/spglm | spglm/iwls.py | iwls | def iwls(y, x, family, offset, y_fix,
ini_betas=None, tol=1.0e-8, max_iter=200, wi=None):
"""
Iteratively re-weighted least squares estimation routine
Parameters
----------
y : array
n*1, dependent variable
x : array
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ini_betas=None, tol=1.0e-8, max_iter=200, wi=None):
"""
Iteratively re-weighted least squares estimation routine
Parameters
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pysal/spglm | spglm/utils.py | _next_regular | def _next_regular(target):
"""
Find the next regular number greater than or equal to target.
Regular numbers are composites of the prime factors 2, 3, and 5.
Also known as 5-smooth numbers or Hamming numbers, these are the optimal
size for inputs to FFTPACK.
Target must be a positive integer.
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"""
Find the next regular number greater than or equal to target.
Regular numbers are composites of the prime factors 2, 3, and 5.
Also known as 5-smooth numbers or Hamming numbers, these are the optimal
size for inputs to FFTPACK.
Target must be a positive integer.
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nudomarinero/wquantiles | wquantiles.py | quantile_1D | def quantile_1D(data, weights, quantile):
"""
Compute the weighted quantile of a 1D numpy array.
Parameters
----------
data : ndarray
Input array (one dimension).
weights : ndarray
Array with the weights of the same size of `data`.
quantile : float
Quantile to comput... | python | def quantile_1D(data, weights, quantile):
"""
Compute the weighted quantile of a 1D numpy array.
Parameters
----------
data : ndarray
Input array (one dimension).
weights : ndarray
Array with the weights of the same size of `data`.
quantile : float
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nudomarinero/wquantiles | wquantiles.py | quantile | def quantile(data, weights, quantile):
"""
Weighted quantile of an array with respect to the last axis.
Parameters
----------
data : ndarray
Input array.
weights : ndarray
Array with the weights. It must have the same size of the last
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"""
Weighted quantile of an array with respect to the last axis.
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----------
data : ndarray
Input array.
weights : ndarray
Array with the weights. It must have the same size of the last
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biocommons/eutils | eutils/queryservice.py | QueryService.einfo | def einfo(self, args=None):
"""
execute a NON-cached, throttled einfo query
einfo.fcgi?db=<database>
Input: Entrez database (&db) or None (returns info on all Entrez databases)
Output: XML containing database statistics
Example: Find database statistics for Entrez Pro... | python | def einfo(self, args=None):
"""
execute a NON-cached, throttled einfo query
einfo.fcgi?db=<database>
Input: Entrez database (&db) or None (returns info on all Entrez databases)
Output: XML containing database statistics
Example: Find database statistics for Entrez Pro... | [
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Output: XML containing database statistics
Example: Find database statistics for Entrez Protein.
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/base.py | CloudObject.native_obj | def native_obj(self):
"""Native storage object."""
if self.__native is None:
self.__native = self._get_object()
return self.__native | python | def native_obj(self):
"""Native storage object."""
if self.__native is None:
self.__native = self._get_object()
return self.__native | [
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/base.py | CloudObject.smart_content_type | def smart_content_type(self):
"""Smart content type."""
content_type = self.content_type
if content_type in (None, '', 'application/octet-stream'):
content_type, _ = mimetypes.guess_type(self.name)
return content_type | python | def smart_content_type(self):
"""Smart content type."""
content_type = self.content_type
if content_type in (None, '', 'application/octet-stream'):
content_type, _ = mimetypes.guess_type(self.name)
return content_type | [
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/base.py | CloudObject.smart_content_encoding | def smart_content_encoding(self):
"""Smart content encoding."""
encoding = self.content_encoding
if not encoding:
base_list = self.basename.split('.')
while (not encoding) and len(base_list) > 1:
_, encoding = mimetypes.guess_type('.'.join(base_list))
... | python | def smart_content_encoding(self):
"""Smart content encoding."""
encoding = self.content_encoding
if not encoding:
base_list = self.basename.split('.')
while (not encoding) and len(base_list) > 1:
_, encoding = mimetypes.guess_type('.'.join(base_list))
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/base.py | CloudContainer.native_container | def native_container(self):
"""Native container object."""
if self.__native is None:
self.__native = self._get_container()
return self.__native | python | def native_container(self):
"""Native container object."""
if self.__native is None:
self.__native = self._get_container()
return self.__native | [
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/base.py | CloudConnection.native_conn | def native_conn(self):
"""Native connection object."""
if self.__native is None:
self.__native = self._get_connection()
return self.__native | python | def native_conn(self):
"""Native connection object."""
if self.__native is None:
self.__native = self._get_connection()
return self.__native | [
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ryan-roemer/django-cloud-browser | cloud_browser/app_settings.py | Setting.validate | def validate(self, name, value):
"""Validate and return a value."""
if self.valid_set and value not in self.valid_set:
raise ImproperlyConfigured(
"%s: \"%s\" is not a valid setting (choose between %s)." %
(name, value, ", ".join("\"%s\"" % x for x in self.va... | python | def validate(self, name, value):
"""Validate and return a value."""
if self.valid_set and value not in self.valid_set:
raise ImproperlyConfigured(
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ryan-roemer/django-cloud-browser | cloud_browser/app_settings.py | Setting.get | def get(self, name, default=None):
"""Get value."""
default = default if default is not None else self.default
try:
value = getattr(_settings, name)
except AttributeError:
value = os.environ.get(name, default) if self.from_env else default
# Convert en... | python | def get(self, name, default=None):
"""Get value."""
default = default if default is not None else self.default
try:
value = getattr(_settings, name)
except AttributeError:
value = os.environ.get(name, default) if self.from_env else default
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ryan-roemer/django-cloud-browser | cloud_browser/app_settings.py | Settings._container_whitelist | def _container_whitelist(self):
"""Container whitelist."""
if self.__container_whitelist is None:
self.__container_whitelist = \
set(self.CLOUD_BROWSER_CONTAINER_WHITELIST or [])
return self.__container_whitelist | python | def _container_whitelist(self):
"""Container whitelist."""
if self.__container_whitelist is None:
self.__container_whitelist = \
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return self.__container_whitelist | [
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ryan-roemer/django-cloud-browser | cloud_browser/app_settings.py | Settings._container_blacklist | def _container_blacklist(self):
"""Container blacklist."""
if self.__container_blacklist is None:
self.__container_blacklist = \
set(self.CLOUD_BROWSER_CONTAINER_BLACKLIST or [])
return self.__container_blacklist | python | def _container_blacklist(self):
"""Container blacklist."""
if self.__container_blacklist is None:
self.__container_blacklist = \
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return self.__container_blacklist | [
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ryan-roemer/django-cloud-browser | cloud_browser/app_settings.py | Settings.container_permitted | def container_permitted(self, name):
"""Return whether or not a container is permitted.
:param name: Container name.
:return: ``True`` if container is permitted.
:rtype: ``bool``
"""
white = self._container_whitelist
black = self._container_blacklist
ret... | python | def container_permitted(self, name):
"""Return whether or not a container is permitted.
:param name: Container name.
:return: ``True`` if container is permitted.
:rtype: ``bool``
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ryan-roemer/django-cloud-browser | cloud_browser/app_settings.py | Settings.app_media_url | def app_media_url(self):
"""Get application media root from real media root URL."""
url = None
media_dir = self.CLOUD_BROWSER_STATIC_MEDIA_DIR
if media_dir:
url = os.path.join(self.MEDIA_URL, media_dir).rstrip('/') + '/'
return url | python | def app_media_url(self):
"""Get application media root from real media root URL."""
url = None
media_dir = self.CLOUD_BROWSER_STATIC_MEDIA_DIR
if media_dir:
url = os.path.join(self.MEDIA_URL, media_dir).rstrip('/') + '/'
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Kitware/tangelo | tangelo/tangelo/pkgdata/plugin/watch/python/__init__.py | module_getmtime | def module_getmtime(filename):
"""
Get the mtime associated with a module. If this is a .pyc or .pyo file and
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:param filename: filename of the module.
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Kitware/tangelo | tangelo/tangelo/pkgdata/plugin/watch/python/__init__.py | module_reload_changed | def module_reload_changed(key):
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Kitware/tangelo | tangelo/tangelo/pkgdata/plugin/watch/python/__init__.py | reload_including_local | def reload_including_local(module):
"""
Reload a module. If it isn"t found, try to include the local service
directory. This must be called from a thread that has acquired the import
lock.
:param module: the module to reload.
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... | python | def reload_including_local(module):
"""
Reload a module. If it isn"t found, try to include the local service
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lock.
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Kitware/tangelo | tangelo/tangelo/pkgdata/plugin/watch/python/__init__.py | reload_recent_submodules | def reload_recent_submodules(module, mtime=0, processed=[]):
"""
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:param module: the module name. The WatchList is checked for modules tha... | python | def reload_recent_submodules(module, mtime=0, processed=[]):
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Kitware/tangelo | tangelo/tangelo/pkgdata/plugin/watch/python/__init__.py | watch_import | def watch_import(name, globals=None, *args, **kwargs):
"""
When a module is asked to be imported, check if we have previously imported
it. If so, check if the time stamp of it, a companion yaml file, or any
modules it imports have changed. If so, reimport the module.
:params: see __builtin__.__im... | python | def watch_import(name, globals=None, *args, **kwargs):
"""
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Kitware/tangelo | tangelo/tangelo/pkgdata/plugin/watch/python/__init__.py | watch_module_cache_get | def watch_module_cache_get(cache, module):
"""
When we ask to fetch a module with optional config file, check time stamps
and dependencies to determine if it should be reloaded or not.
:param cache: the cache object that stores whether to check for config
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ryan-roemer/django-cloud-browser | cloud_browser/common.py | get_int | def get_int(value, default, test_fn=None):
"""Convert value to integer.
:param value: Integer value.
:param default: Default value on failed conversion.
:param test_fn: Constraint function. Use default if returns ``False``.
:return: Integer value.
:rtype: ``int``
"""
try:
conve... | python | def get_int(value, default, test_fn=None):
"""Convert value to integer.
:param value: Integer value.
:param default: Default value on failed conversion.
:param test_fn: Constraint function. Use default if returns ``False``.
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ryan-roemer/django-cloud-browser | cloud_browser/common.py | requires | def requires(module, name=""):
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ryan-roemer/django-cloud-browser | cloud_browser/common.py | dt_from_header | def dt_from_header(date_str):
"""Try various RFC conversions to ``datetime`` or return ``None``.
:param date_str: Date string.
:type date_str: ``string``
:return: Date time.
:rtype: :class:`datetime.datetime` or ``None``
"""
convert_fns = (
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"""Try various RFC conversions to ``datetime`` or return ``None``.
:param date_str: Date string.
:type date_str: ``string``
:return: Date time.
:rtype: :class:`datetime.datetime` or ``None``
"""
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ryan-roemer/django-cloud-browser | cloud_browser/common.py | basename | def basename(path):
"""Rightmost part of path after separator."""
base_path = path.strip(SEP)
sep_ind = base_path.rfind(SEP)
if sep_ind < 0:
return path
return base_path[sep_ind + 1:] | python | def basename(path):
"""Rightmost part of path after separator."""
base_path = path.strip(SEP)
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return path
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ryan-roemer/django-cloud-browser | cloud_browser/common.py | path_parts | def path_parts(path):
"""Split path into container, object.
:param path: Path to resource (including container).
:type path: `string`
:return: Container, storage object tuple.
:rtype: `tuple` of `string`, `string`
"""
path = path if path is not None else ''
container_path = object_pat... | python | def path_parts(path):
"""Split path into container, object.
:param path: Path to resource (including container).
:type path: `string`
:return: Container, storage object tuple.
:rtype: `tuple` of `string`, `string`
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ryan-roemer/django-cloud-browser | cloud_browser/common.py | path_yield | def path_yield(path):
"""Yield on all path parts."""
for part in (x for x in path.strip(SEP).split(SEP) if x not in (None, '')):
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"""Yield on all path parts."""
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ryan-roemer/django-cloud-browser | cloud_browser/common.py | path_join | def path_join(*args):
"""Join path parts to single path."""
return SEP.join((x for x in args if x not in (None, ''))).strip(SEP) | python | def path_join(*args):
"""Join path parts to single path."""
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ryan-roemer/django-cloud-browser | cloud_browser/common.py | relpath | def relpath(path, start):
"""Get relative path to start.
Note: Modeled after python2.6 :meth:`os.path.relpath`.
"""
path_items = path_list(path)
start_items = path_list(start)
# Find common parts of path.
common = []
for pth, stt in zip(path_items, start_items):
if pth != stt:
... | python | def relpath(path, start):
"""Get relative path to start.
Note: Modeled after python2.6 :meth:`os.path.relpath`.
"""
path_items = path_list(path)
start_items = path_list(start)
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bjmorgan/lattice_mc | lattice_mc/species.py | Species.collective_dr_squared | def collective_dr_squared( self ):
"""
Squared sum of total displacements for these atoms.
Args:
None
Returns:
(Float): The square of the summed total displacements for these atoms.
"""
return sum( np.square( sum( [ atom.dr for atom in self.atoms... | python | def collective_dr_squared( self ):
"""
Squared sum of total displacements for these atoms.
Args:
None
Returns:
(Float): The square of the summed total displacements for these atoms.
"""
return sum( np.square( sum( [ atom.dr for atom in self.atoms... | [
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bjmorgan/lattice_mc | lattice_mc/species.py | Species.occupations | def occupations( self, site_label ):
"""
Number of these atoms occupying a specific site type.
Args:
site_label (Str): Label for the site type being considered.
Returns:
(Int): Number of atoms occupying sites of type `site_label`.
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Number of these atoms occupying a specific site type.
Args:
site_label (Str): Label for the site type being considered.
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(Int): Number of atoms occupying sites of type `site_label`.
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futurecolors/django-geoip | django_geoip/utils.py | get_class | def get_class(class_string):
"""
Convert a string version of a function name to the callable object.
"""
try:
mod_name, class_name = get_mod_func(class_string)
if class_name != '':
cls = getattr(__import__(mod_name, {}, {}, ['']), class_name)
return cls
except... | python | def get_class(class_string):
"""
Convert a string version of a function name to the callable object.
"""
try:
mod_name, class_name = get_mod_func(class_string)
if class_name != '':
cls = getattr(__import__(mod_name, {}, {}, ['']), class_name)
return cls
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/google.py | GsObject._is_gs_folder | def _is_gs_folder(cls, result):
"""Return ``True`` if GS standalone folder object.
GS will create a 0 byte ``<FOLDER NAME>_$folder$`` key as a
pseudo-directory place holder if there are no files present.
"""
return (cls.is_key(result) and
result.size == 0 and
... | python | def _is_gs_folder(cls, result):
"""Return ``True`` if GS standalone folder object.
GS will create a 0 byte ``<FOLDER NAME>_$folder$`` key as a
pseudo-directory place holder if there are no files present.
"""
return (cls.is_key(result) and
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/google.py | GsObject.is_prefix | def is_prefix(cls, result):
"""Return ``True`` if result is a prefix object.
.. note::
Boto uses the S3 Prefix object for GS prefixes.
"""
from boto.s3.prefix import Prefix
return isinstance(result, Prefix) or cls._is_gs_folder(result) | python | def is_prefix(cls, result):
"""Return ``True`` if result is a prefix object.
.. note::
Boto uses the S3 Prefix object for GS prefixes.
"""
from boto.s3.prefix import Prefix
return isinstance(result, Prefix) or cls._is_gs_folder(result) | [
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/boto_base.py | BotoExceptionWrapper.translate | def translate(self, exc):
"""Return whether or not to do translation."""
from boto.exception import StorageResponseError
if isinstance(exc, StorageResponseError):
if exc.status == 404:
return self.error_cls(str(exc))
return None | python | def translate(self, exc):
"""Return whether or not to do translation."""
from boto.exception import StorageResponseError
if isinstance(exc, StorageResponseError):
if exc.status == 404:
return self.error_cls(str(exc))
return None | [
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/boto_base.py | BotoObject.from_result | def from_result(cls, container, result):
"""Create from ambiguous result."""
if result is None:
raise errors.NoObjectException
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return cls.from_prefix(container, result)
elif cls.is_key(result):
return cls.from_key(containe... | python | def from_result(cls, container, result):
"""Create from ambiguous result."""
if result is None:
raise errors.NoObjectException
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return cls.from_prefix(container, result)
elif cls.is_key(result):
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/boto_base.py | BotoObject.from_key | def from_key(cls, container, key):
"""Create from key object."""
if key is None:
raise errors.NoObjectException
# Get Key (1123): Tue, 13 Apr 2010 14:02:48 GMT
# List Keys (8601): 2010-04-13T14:02:48.000Z
return cls(container,
name=key.name,
... | python | def from_key(cls, container, key):
"""Create from key object."""
if key is None:
raise errors.NoObjectException
# Get Key (1123): Tue, 13 Apr 2010 14:02:48 GMT
# List Keys (8601): 2010-04-13T14:02:48.000Z
return cls(container,
name=key.name,
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/boto_base.py | BotoContainer.from_bucket | def from_bucket(cls, connection, bucket):
"""Create from bucket object."""
if bucket is None:
raise errors.NoContainerException
# It appears that Amazon does not have a single-shot REST query to
# determine the number of keys / overall byte size of a bucket.
return c... | python | def from_bucket(cls, connection, bucket):
"""Create from bucket object."""
if bucket is None:
raise errors.NoContainerException
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# determine the number of keys / overall byte size of a bucket.
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/config.py | Config.from_settings | def from_settings(cls):
"""Create configuration from Django settings or environment."""
from cloud_browser.app_settings import settings
from django.core.exceptions import ImproperlyConfigured
conn_cls = conn_fn = None
datastore = settings.CLOUD_BROWSER_DATASTORE
if datas... | python | def from_settings(cls):
"""Create configuration from Django settings or environment."""
from cloud_browser.app_settings import settings
from django.core.exceptions import ImproperlyConfigured
conn_cls = conn_fn = None
datastore = settings.CLOUD_BROWSER_DATASTORE
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/config.py | Config.get_connection_cls | def get_connection_cls(cls):
"""Return connection class.
:rtype: :class:`type`
"""
if cls.__connection_cls is None:
cls.__connection_cls, _ = cls.from_settings()
return cls.__connection_cls | python | def get_connection_cls(cls):
"""Return connection class.
:rtype: :class:`type`
"""
if cls.__connection_cls is None:
cls.__connection_cls, _ = cls.from_settings()
return cls.__connection_cls | [
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/config.py | Config.get_connection | def get_connection(cls):
"""Return connection object.
:rtype: :class:`cloud_browser.cloud.base.CloudConnection`
"""
if cls.__connection_obj is None:
if cls.__connection_fn is None:
_, cls.__connection_fn = cls.from_settings()
cls.__connection_obj ... | python | def get_connection(cls):
"""Return connection object.
:rtype: :class:`cloud_browser.cloud.base.CloudConnection`
"""
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/fs.py | FilesystemObject.from_path | def from_path(cls, container, path):
"""Create object from path."""
from datetime import datetime
path = path.strip(SEP)
full_path = os.path.join(container.base_path, path)
last_modified = datetime.fromtimestamp(os.path.getmtime(full_path))
obj_type = cls.type_cls.SUBDIR... | python | def from_path(cls, container, path):
"""Create object from path."""
from datetime import datetime
path = path.strip(SEP)
full_path = os.path.join(container.base_path, path)
last_modified = datetime.fromtimestamp(os.path.getmtime(full_path))
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path = path.strip(SEP)
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bjmorgan/lattice_mc | lattice_mc/init_lattice.py | cubic_lattice | def cubic_lattice( a, b, c, spacing ):
"""
Generate a cubic lattice.
Args:
a (Int): Number of lattice repeat units along x.
b (Int): Number of lattice repeat units along y.
c (Int): Number of lattice repeat units along z.
spacing (Float): Distance bet... | python | def cubic_lattice( a, b, c, spacing ):
"""
Generate a cubic lattice.
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a (Int): Number of lattice repeat units along x.
b (Int): Number of lattice repeat units along y.
c (Int): Number of lattice repeat units along z.
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bjmorgan/lattice_mc | lattice_mc/init_lattice.py | lattice_from_sites_file | def lattice_from_sites_file( site_file, cell_lengths ):
"""
Generate a lattice from a sites file.
Args:
site_file (Str): Filename for the file containing the site information.
cell_lengths (List(Float,Float,Float)): A list containing the [ x, y, z ] cell lengths.
Returns:
(Latt... | python | def lattice_from_sites_file( site_file, cell_lengths ):
"""
Generate a lattice from a sites file.
Args:
site_file (Str): Filename for the file containing the site information.
cell_lengths (List(Float,Float,Float)): A list containing the [ x, y, z ] cell lengths.
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futurecolors/django-geoip | django_geoip/views.py | set_location | def set_location(request):
"""
Redirect to a given url while setting the chosen location in the
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Since this view changes how the user will see the rest of the site, it must
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"""
Redirect to a given url while setting the chosen location in the
cookie. The url and the location_id need to be
specified in the request parameters.
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bjmorgan/lattice_mc | lattice_mc/lattice_site.py | Site.site_specific_nn_occupation | def site_specific_nn_occupation( self ):
"""
Returns the number of occupied nearest neighbour sites, classified by site type.
Args:
None
Returns:
(Dict(Str:Int)): Dictionary of nearest-neighbour occupied site numbers, classified by site label, e.g. { 'A' : 2, 'B... | python | def site_specific_nn_occupation( self ):
"""
Returns the number of occupied nearest neighbour sites, classified by site type.
Args:
None
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bjmorgan/lattice_mc | lattice_mc/lattice_site.py | Site.cn_occupation_energy | def cn_occupation_energy( self, delta_occupation=None ):
"""
The coordination-number dependent energy for this site.
Args:
delta_occupation (:obj:Dict(Str:Int), optional): A dictionary of a change in (site-type specific) coordination number, e.g. { 'A' : 1, 'B' : -1 }.
... | python | def cn_occupation_energy( self, delta_occupation=None ):
"""
The coordination-number dependent energy for this site.
Args:
delta_occupation (:obj:Dict(Str:Int), optional): A dictionary of a change in (site-type specific) coordination number, e.g. { 'A' : 1, 'B' : -1 }.
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futurecolors/django-geoip | django_geoip/management/ipgeobase.py | IpGeobase.clear_database | def clear_database(self):
""" Removes all geodata stored in database.
Useful for development, never use on production.
"""
self.logger.info('Removing obsolete geoip from database...')
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""" Removes all geodata stored in database.
Useful for development, never use on production.
"""
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futurecolors/django-geoip | django_geoip/management/ipgeobase.py | IpGeobase._download_extract_archive | def _download_extract_archive(self, url):
""" Returns dict with 2 extracted filenames """
self.logger.info('Downloading zipfile from ipgeobase.ru...')
temp_dir = tempfile.mkdtemp()
archive = zipfile.ZipFile(self._download_url_to_string(url))
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""" Returns dict with 2 extracted filenames """
self.logger.info('Downloading zipfile from ipgeobase.ru...')
temp_dir = tempfile.mkdtemp()
archive = zipfile.ZipFile(self._download_url_to_string(url))
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""" Converts file line into dictonary """
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bjmorgan/lattice_mc | lattice_mc/lookup_table.py | LookupTable.relative_probability | def relative_probability( self, l1, l2, c1, c2 ):
"""
The relative probability for a jump between two sites with specific site types and coordination numbers.
Args:
l1 (Str): Site label for the initial site.
l2 (Str): Site label for the final site.
c1 (Int): ... | python | def relative_probability( self, l1, l2, c1, c2 ):
"""
The relative probability for a jump between two sites with specific site types and coordination numbers.
Args:
l1 (Str): Site label for the initial site.
l2 (Str): Site label for the final site.
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bjmorgan/lattice_mc | lattice_mc/lookup_table.py | LookupTable.generate_nearest_neighbour_lookup_table | def generate_nearest_neighbour_lookup_table( self ):
"""
Construct a look-up table of relative jump probabilities for a nearest-neighbour interaction Hamiltonian.
Args:
None.
Returns:
None.
"""
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for site_label_1 ... | python | def generate_nearest_neighbour_lookup_table( self ):
"""
Construct a look-up table of relative jump probabilities for a nearest-neighbour interaction Hamiltonian.
Args:
None.
Returns:
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bjmorgan/lattice_mc | lattice_mc/atom.py | Atom.reset | def reset( self ):
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"""
Reinitialise the stored displacements, number of hops, and list of sites visited for this `Atom`.
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ryan-roemer/django-cloud-browser | fabfile.py | _manage | def _manage(target, extra='', proj_settings=PROJ_SETTINGS):
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Decorate a function to automatically convert its return type to a string
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/errors.py | CloudExceptionWrapper.excepts | def excepts(cls):
"""Return tuple of underlying exception classes to trap and wrap.
:rtype: ``tuple`` of ``type``
"""
if cls._excepts is None:
cls._excepts = tuple(cls.translations.keys())
return cls._excepts | python | def excepts(cls):
"""Return tuple of underlying exception classes to trap and wrap.
:rtype: ``tuple`` of ``type``
"""
if cls._excepts is None:
cls._excepts = tuple(cls.translations.keys())
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ryan-roemer/django-cloud-browser | cloud_browser/cloud/errors.py | CloudExceptionWrapper.translate | def translate(self, exc):
"""Return translation of exception to new class.
Calling code should only raise exception if exception class is passed
in, else ``None`` (which signifies no wrapping should be done).
"""
# Find actual class.
for key in self.translations.keys():
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"""Return translation of exception to new class.
Calling code should only raise exception if exception class is passed
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ryan-roemer/django-cloud-browser | cloud_browser/views.py | settings_view_decorator | def settings_view_decorator(function):
"""Insert decorator from settings, if any.
.. note:: Decorator in ``CLOUD_BROWSER_VIEW_DECORATOR`` can be either a
callable or a fully-qualified string path (the latter, which we'll
lazy import).
"""
dec = settings.CLOUD_BROWSER_VIEW_DECORATOR
... | python | def settings_view_decorator(function):
"""Insert decorator from settings, if any.
.. note:: Decorator in ``CLOUD_BROWSER_VIEW_DECORATOR`` can be either a
callable or a fully-qualified string path (the latter, which we'll
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ryan-roemer/django-cloud-browser | cloud_browser/views.py | _breadcrumbs | def _breadcrumbs(path):
"""Return breadcrumb dict from path."""
full = None
crumbs = []
for part in path_yield(path):
full = path_join(full, part) if full else part
crumbs.append((full, part))
return crumbs | python | def _breadcrumbs(path):
"""Return breadcrumb dict from path."""
full = None
crumbs = []
for part in path_yield(path):
full = path_join(full, part) if full else part
crumbs.append((full, part))
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ryan-roemer/django-cloud-browser | cloud_browser/views.py | browser | def browser(request, path='', template="cloud_browser/browser.html"):
"""View files in a file path.
:param request: The request.
:param path: Path to resource, including container as first part of path.
:param template: Template to render.
"""
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try:
# p... | python | def browser(request, path='', template="cloud_browser/browser.html"):
"""View files in a file path.
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:param path: Path to resource, including container as first part of path.
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ryan-roemer/django-cloud-browser | cloud_browser/views.py | document | def document(_, path=''):
"""View single document from path.
:param path: Path to resource, including container as first part of path.
"""
container_path, object_path = path_parts(path)
conn = get_connection()
try:
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except errors.NoConta... | python | def document(_, path=''):
"""View single document from path.
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"""
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ryan-roemer/django-cloud-browser | cloud_browser/templatetags/cloud_browser_extras.py | truncatechars | def truncatechars(value, num, end_text="..."):
"""Truncate string on character boundary.
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Django ticket `5025 <http://code.djangoproject.com/ticket/5025>`_ has a
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{{ my_variable|truncatechars:... | python | def truncatechars(value, num, end_text="..."):
"""Truncate string on character boundary.
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Django ticket `5025 <http://code.djangoproject.com/ticket/5025>`_ has a
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ryan-roemer/django-cloud-browser | cloud_browser/templatetags/cloud_browser_extras.py | cloud_browser_media_url | def cloud_browser_media_url(_, token):
"""Get base media URL for application static media.
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<link rel="stylesheet" type="text/css"
href="{% cloud_browser_media... | python | def cloud_browser_media_url(_, token):
"""Get base media URL for application static media.
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bjmorgan/lattice_mc | lattice_mc/simulation.py | Simulation.reset | def reset( self ):
"""
Reset all counters for this simulation.
Args:
None
Returns:
None
"""
self.lattice.reset()
for atom in self.atoms.atoms:
atom.reset() | python | def reset( self ):
"""
Reset all counters for this simulation.
Args:
None
Returns:
None
"""
self.lattice.reset()
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bjmorgan/lattice_mc | lattice_mc/simulation.py | Simulation.set_number_of_atoms | def set_number_of_atoms( self, n, selected_sites=None ):
"""
Set the number of atoms for the simulation, and populate the simulation lattice.
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n (Int): Number of atoms for this simulation.
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"""
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bjmorgan/lattice_mc | lattice_mc/simulation.py | Simulation.is_initialised | def is_initialised( self ):
"""
Check whether the simulation has been initialised.
Args:
None
Returns:
None
"""
if not self.lattice:
raise AttributeError('Running a simulation needs the lattice to be initialised')
if not self.... | python | def is_initialised( self ):
"""
Check whether the simulation has been initialised.
Args:
None
Returns:
None
"""
if not self.lattice:
raise AttributeError('Running a simulation needs the lattice to be initialised')
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bjmorgan/lattice_mc | lattice_mc/simulation.py | Simulation.old_collective_correlation | def old_collective_correlation( self ):
"""
Returns the collective correlation factor, f_I
Args:
None
Returns:
(Float): The collective correlation factor, f_I.
Notes:
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... | python | def old_collective_correlation( self ):
"""
Returns the collective correlation factor, f_I
Args:
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Returns:
(Float): The collective correlation factor, f_I.
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bjmorgan/lattice_mc | lattice_mc/simulation.py | Simulation.collective_diffusion_coefficient | def collective_diffusion_coefficient( self ):
"""
Returns the collective or "jump" diffusion coefficient, D_J.
Args:
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Returns:
(Float): The collective diffusion coefficient, D_J.
"""
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return self.atoms.collective_d... | python | def collective_diffusion_coefficient( self ):
"""
Returns the collective or "jump" diffusion coefficient, D_J.
Args:
None
Returns:
(Float): The collective diffusion coefficient, D_J.
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bjmorgan/lattice_mc | lattice_mc/simulation.py | Simulation.setup_lookup_table | def setup_lookup_table( self, hamiltonian='nearest-neighbour' ):
"""
Create a jump-probability look-up table corresponding to the appropriate Hamiltonian.
Args:
hamiltonian (Str, optional): String specifying the simulation Hamiltonian.
valid values are 'nearest-neigh... | python | def setup_lookup_table( self, hamiltonian='nearest-neighbour' ):
"""
Create a jump-probability look-up table corresponding to the appropriate Hamiltonian.
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.update | def update( self, jump ):
"""
Update the lattice state by accepting a specific jump
Args:
jump (Jump): The jump that has been accepted.
Returns:
None.
"""
atom = jump.initial_site.atom
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#print( "at... | python | def update( self, jump ):
"""
Update the lattice state by accepting a specific jump
Args:
jump (Jump): The jump that has been accepted.
Returns:
None.
"""
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.populate_sites | def populate_sites( self, number_of_atoms, selected_sites=None ):
"""
Populate the lattice sites with a specific number of atoms.
Args:
number_of_atoms (Int): The number of atoms to populate the lattice sites with.
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.jump | def jump( self ):
"""
Select a jump at random from all potential jumps, then update the lattice state.
Args:
None
Returns:
None
"""
potential_jumps = self.potential_jumps()
if not potential_jumps:
raise BlockedLatticeError('No... | python | def jump( self ):
"""
Select a jump at random from all potential jumps, then update the lattice state.
Args:
None
Returns:
None
"""
potential_jumps = self.potential_jumps()
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.site_occupation_statistics | def site_occupation_statistics( self ):
"""
Average site occupation for each site type
Args:
None
Returns:
(Dict(Str:Float)): Dictionary of occupation statistics, e.g.::
{ 'A' : 2.5, 'B' : 25.3 }
"""
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"""
Average site occupation for each site type
Args:
None
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(Dict(Str:Float)): Dictionary of occupation statistics, e.g.::
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.set_site_energies | def set_site_energies( self, energies ):
"""
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energies (Dict(Str:Float): Dictionary of energies for each site label, e.g.::
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Returns:
None
... | python | def set_site_energies( self, energies ):
"""
Set the energies for every site in the lattice according to the site labels.
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energies (Dict(Str:Float): Dictionary of energies for each site label, e.g.::
{ 'A' : 1.0, 'B', 0.0 }
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.set_cn_energies | def set_cn_energies( self, cn_energies ):
"""
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.site_specific_coordination_numbers | def site_specific_coordination_numbers( self ):
"""
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(Dict(Str:List(Int))) : Dictionary of coordination numbers for each site type, e.g.::
{ 'A' : [ 2, 4 ], 'B' ... | python | def site_specific_coordination_numbers( self ):
"""
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.transmute_sites | def transmute_sites( self, old_site_label, new_site_label, n_sites_to_change ):
"""
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Args:
old_site_label (String or List(String)): Site label(s) of the sites to be modified..
new_sit... | python | def transmute_sites( self, old_site_label, new_site_label, n_sites_to_change ):
"""
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old_site_label (String or List(String)): Site label(s) of the sites to be modified..
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.connected_sites | def connected_sites( self, site_labels=None ):
"""
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"""
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bjmorgan/lattice_mc | lattice_mc/lattice.py | Lattice.select_sites | def select_sites( self, site_labels ):
"""
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Args:
site_labels (List(Str)|Set(Str)|Str): Labels of sites to select.
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(... | python | def select_sites( self, site_labels ):
"""
Selects sites in the lattice with specified labels.
Args:
site_labels (List(Str)|Set(Str)|Str): Labels of sites to select.
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Args:
site_labels (List(Str)|Set(Str)|Str): Labels of sites to select.
This can be a List [ 'A', 'B' ], a Set ( 'A', 'B' ), or a String 'A'.
Returns:
(List(Site)): List of sites with labels given by `site_label... | [
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bjmorgan/lattice_mc | lattice_mc/cluster.py | Cluster.merge | def merge( self, other_cluster ):
"""
Combine two clusters into a single cluster.
Args:
other_cluster (Cluster): The second cluster to combine.
Returns:
(Cluster): The combination of both clusters.
"""
new_cluster = Cluster( self.sites | other_... | python | def merge( self, other_cluster ):
"""
Combine two clusters into a single cluster.
Args:
other_cluster (Cluster): The second cluster to combine.
Returns:
(Cluster): The combination of both clusters.
"""
new_cluster = Cluster( self.sites | other_... | [
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bjmorgan/lattice_mc | lattice_mc/cluster.py | Cluster.sites_at_edges | def sites_at_edges( self ):
"""
Finds the six sites with the maximum and minimum coordinates along x, y, and z.
Args:
None
Returns:
(List(List)): In the order [ +x, -x, +y, -y, +z, -z ]
"""
min_x = min( [ s.r[0] for s in self.sites ] )
m... | python | def sites_at_edges( self ):
"""
Finds the six sites with the maximum and minimum coordinates along x, y, and z.
Args:
None
Returns:
(List(List)): In the order [ +x, -x, +y, -y, +z, -z ]
"""
min_x = min( [ s.r[0] for s in self.sites ] )
m... | [
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bjmorgan/lattice_mc | lattice_mc/cluster.py | Cluster.is_periodically_contiguous | def is_periodically_contiguous( self ):
"""
logical check whether a cluster connects with itself across the
simulation periodic boundary conditions.
Args:
none
Returns
( Bool, Bool, Bool ): Contiguity along the x, y, and z coordinate axes
"""
... | python | def is_periodically_contiguous( self ):
"""
logical check whether a cluster connects with itself across the
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Args:
none
Returns
( Bool, Bool, Bool ): Contiguity along the x, y, and z coordinate axes
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bjmorgan/lattice_mc | lattice_mc/cluster.py | Cluster.remove_sites_from_neighbours | def remove_sites_from_neighbours( self, remove_labels ):
"""
Removes sites from the set of neighbouring sites if these have labels in remove_labels.
Args:
Remove_labels (List) or (Str): List of Site labels to be removed from the cluster neighbour set.
Returns:
N... | python | def remove_sites_from_neighbours( self, remove_labels ):
"""
Removes sites from the set of neighbouring sites if these have labels in remove_labels.
Args:
Remove_labels (List) or (Str): List of Site labels to be removed from the cluster neighbour set.
Returns:
N... | [
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bjmorgan/lattice_mc | lattice_mc/transitions.py | Transitions.cumulative_probabilities | def cumulative_probabilities( self ):
"""
Cumulative sum of the relative probabilities for all possible jumps.
Args:
None
Returns:
(np.array): Cumulative sum of relative jump probabilities.
"""
partition_function = np.sum( self.p )
return... | python | def cumulative_probabilities( self ):
"""
Cumulative sum of the relative probabilities for all possible jumps.
Args:
None
Returns:
(np.array): Cumulative sum of relative jump probabilities.
"""
partition_function = np.sum( self.p )
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bjmorgan/lattice_mc | lattice_mc/transitions.py | Transitions.random | def random( self ):
"""
Select a jump at random with appropriate relative probabilities.
Args:
None
Returns:
(Jump): The randomly selected Jump.
"""
j = np.searchsorted( self.cumulative_probabilities(), random.random() )
return self.jumps... | python | def random( self ):
"""
Select a jump at random with appropriate relative probabilities.
Args:
None
Returns:
(Jump): The randomly selected Jump.
"""
j = np.searchsorted( self.cumulative_probabilities(), random.random() )
return self.jumps... | [
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bjmorgan/lattice_mc | lattice_mc/transitions.py | Transitions.time_to_jump | def time_to_jump( self ):
"""
The timestep until the next jump.
Args:
None
Returns:
(Float): The timestep until the next jump.
"""
k_tot = rate_prefactor * np.sum( self.p )
return -( 1.0 / k_tot ) * math.log( random.random() ) | python | def time_to_jump( self ):
"""
The timestep until the next jump.
Args:
None
Returns:
(Float): The timestep until the next jump.
"""
k_tot = rate_prefactor * np.sum( self.p )
return -( 1.0 / k_tot ) * math.log( random.random() ) | [
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futurecolors/django-geoip | django_geoip/base.py | Locator._get_real_ip | def _get_real_ip(self):
"""
Get IP from request.
:param request: A usual request object
:type request: HttpRequest
:return: ipv4 string or None
"""
try:
# Trying to work with most common proxy headers
real_ip = self.request.META['HTTP_X_FO... | python | def _get_real_ip(self):
"""
Get IP from request.
:param request: A usual request object
:type request: HttpRequest
:return: ipv4 string or None
"""
try:
# Trying to work with most common proxy headers
real_ip = self.request.META['HTTP_X_FO... | [
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futurecolors/django-geoip | django_geoip/base.py | Locator._get_ip_range | def _get_ip_range(self):
"""
Fetches IpRange instance if request IP is found in database.
:param request: A ususal request object
:type request: HttpRequest
:return: IpRange object or None
"""
ip = self._get_real_ip()
try:
geobase_entry = IpRa... | python | def _get_ip_range(self):
"""
Fetches IpRange instance if request IP is found in database.
:param request: A ususal request object
:type request: HttpRequest
:return: IpRange object or None
"""
ip = self._get_real_ip()
try:
geobase_entry = IpRa... | [
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futurecolors/django-geoip | django_geoip/base.py | Locator._get_stored_location | def _get_stored_location(self):
""" Get location from cookie.
:param request: A ususal request object
:type request: HttpRequest
:return: Custom location model
"""
location_storage = storage_class(request=self.request, response=None)
return location_storage.get() | python | def _get_stored_location(self):
""" Get location from cookie.
:param request: A ususal request object
:type request: HttpRequest
:return: Custom location model
"""
location_storage = storage_class(request=self.request, response=None)
return location_storage.get() | [
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