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idlesign/django-sitemessage | sitemessage/messengers/smtp.py | SMTPMessenger._build_message | def _build_message(self, to, text, subject=None, mtype=None, unsubscribe_url=None):
"""Constructs a MIME message from message and dispatch models."""
# TODO Maybe file attachments handling through `files` message_model context var.
if subject is None:
subject = u'%s' % _('No Subject... | python | def _build_message(self, to, text, subject=None, mtype=None, unsubscribe_url=None):
"""Constructs a MIME message from message and dispatch models."""
# TODO Maybe file attachments handling through `files` message_model context var.
if subject is None:
subject = u'%s' % _('No Subject... | [
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troeger/opensubmit | web/opensubmit/admin/__init__.py | _social_auth_login | def _social_auth_login(self, request, **kwargs):
'''
View function that redirects to social auth login,
in case the user is not logged in.
'''
if request.user.is_authenticated():
if not request.user.is_active or not request.user.is_staff:
raise PermissionDenied()
else... | python | def _social_auth_login(self, request, **kwargs):
'''
View function that redirects to social auth login,
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'''
if request.user.is_authenticated():
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troeger/opensubmit | web/opensubmit/admin/course.py | CourseAdmin.get_queryset | def get_queryset(self, request):
''' Restrict the listed courses for the current user.'''
qs = super(CourseAdmin, self).get_queryset(request)
if request.user.is_superuser:
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''' Restrict the listed courses for the current user.'''
qs = super(CourseAdmin, self).get_queryset(request)
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umich-brcf-bioinf/Connor | connor/connor.py | _build_tag_families | def _build_tag_families(tagged_paired_aligns,
ranked_tags,
hamming_threshold,
consensus_threshold,
family_filter=lambda _: None):
'''Partition paired aligns into families.
Each read is considered against each ranked... | python | def _build_tag_families(tagged_paired_aligns,
ranked_tags,
hamming_threshold,
consensus_threshold,
family_filter=lambda _: None):
'''Partition paired aligns into families.
Each read is considered against each ranked... | [
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umich-brcf-bioinf/Connor | connor/connor.py | _rank_tags | def _rank_tags(tagged_paired_aligns):
'''Return the list of tags ranked from most to least popular.'''
tag_count_dict = defaultdict(int)
for paired_align in tagged_paired_aligns:
tag_count_dict[paired_align.umt] += 1
tags_by_count = utils.sort_dict(tag_count_dict)
ranked_tags = [tag_count[0]... | python | def _rank_tags(tagged_paired_aligns):
'''Return the list of tags ranked from most to least popular.'''
tag_count_dict = defaultdict(int)
for paired_align in tagged_paired_aligns:
tag_count_dict[paired_align.umt] += 1
tags_by_count = utils.sort_dict(tag_count_dict)
ranked_tags = [tag_count[0]... | [
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umich-brcf-bioinf/Connor | connor/connor.py | main | def main(command_line_args=None):
'''Connor entry point. See help for more info'''
log = None
if not command_line_args:
command_line_args = sys.argv
try:
start_time = time.time()
args = parse_command_line_args(command_line_args)
log = utils.Logger(args)
command_va... | python | def main(command_line_args=None):
'''Connor entry point. See help for more info'''
log = None
if not command_line_args:
command_line_args = sys.argv
try:
start_time = time.time()
args = parse_command_line_args(command_line_args)
log = utils.Logger(args)
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idlesign/django-sitemessage | sitemessage/shortcuts.py | schedule_email | def schedule_email(message, to, subject=None, sender=None, priority=None):
"""Schedules an email message for delivery.
:param dict, str message: str or dict: use str for simple text email;
dict - to compile email from a template (default: `sitemessage/messages/email_html__smtp.html`).
:param list|s... | python | def schedule_email(message, to, subject=None, sender=None, priority=None):
"""Schedules an email message for delivery.
:param dict, str message: str or dict: use str for simple text email;
dict - to compile email from a template (default: `sitemessage/messages/email_html__smtp.html`).
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idlesign/django-sitemessage | sitemessage/shortcuts.py | schedule_jabber_message | def schedule_jabber_message(message, to, sender=None, priority=None):
"""Schedules Jabber XMPP message for delivery.
:param str message: text to send.
:param list|str|unicode to: recipients addresses or Django User model heir instances with `email` attributes.
:param User sender: User model heir instan... | python | def schedule_jabber_message(message, to, sender=None, priority=None):
"""Schedules Jabber XMPP message for delivery.
:param str message: text to send.
:param list|str|unicode to: recipients addresses or Django User model heir instances with `email` attributes.
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idlesign/django-sitemessage | sitemessage/shortcuts.py | schedule_tweet | def schedule_tweet(message, to='', sender=None, priority=None):
"""Schedules a Tweet for delivery.
:param str message: text to send.
:param list|str|unicode to: recipients addresses or Django User model heir instances with `telegram` attributes.
If supplied tweets will be @-replies.
:param User... | python | def schedule_tweet(message, to='', sender=None, priority=None):
"""Schedules a Tweet for delivery.
:param str message: text to send.
:param list|str|unicode to: recipients addresses or Django User model heir instances with `telegram` attributes.
If supplied tweets will be @-replies.
:param User... | [
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idlesign/django-sitemessage | sitemessage/shortcuts.py | schedule_telegram_message | def schedule_telegram_message(message, to, sender=None, priority=None):
"""Schedules Telegram message for delivery.
:param str message: text to send.
:param list|str|unicode to: recipients addresses or Django User model heir instances with `telegram` attributes.
:param User sender: User model heir inst... | python | def schedule_telegram_message(message, to, sender=None, priority=None):
"""Schedules Telegram message for delivery.
:param str message: text to send.
:param list|str|unicode to: recipients addresses or Django User model heir instances with `telegram` attributes.
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idlesign/django-sitemessage | sitemessage/shortcuts.py | schedule_facebook_message | def schedule_facebook_message(message, sender=None, priority=None):
"""Schedules Facebook wall message for delivery.
:param str message: text or URL to publish.
:param User sender: User model heir instance
:param int priority: number describing message priority. If set overrides priority provided with ... | python | def schedule_facebook_message(message, sender=None, priority=None):
"""Schedules Facebook wall message for delivery.
:param str message: text or URL to publish.
:param User sender: User model heir instance
:param int priority: number describing message priority. If set overrides priority provided with ... | [
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idlesign/django-sitemessage | sitemessage/shortcuts.py | schedule_vkontakte_message | def schedule_vkontakte_message(message, to, sender=None, priority=None):
"""Schedules VKontakte message for delivery.
:param str message: text or URL to publish on wall.
:param list|str|unicode to: recipients addresses or Django User model heir instances with `vk` attributes.
:param User sender: User m... | python | def schedule_vkontakte_message(message, to, sender=None, priority=None):
"""Schedules VKontakte message for delivery.
:param str message: text or URL to publish on wall.
:param list|str|unicode to: recipients addresses or Django User model heir instances with `vk` attributes.
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idlesign/django-sitemessage | sitemessage/messengers/base.py | MessengerBase.get_alias | def get_alias(cls):
"""Returns messenger alias.
:return: str
:rtype: str
"""
if cls.alias is None:
cls.alias = cls.__name__
return cls.alias | python | def get_alias(cls):
"""Returns messenger alias.
:return: str
:rtype: str
"""
if cls.alias is None:
cls.alias = cls.__name__
return cls.alias | [
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idlesign/django-sitemessage | sitemessage/messengers/base.py | MessengerBase._structure_recipients_data | def _structure_recipients_data(cls, recipients):
"""Converts recipients data into a list of Recipient objects.
:param list recipients: list of objects
:return: list of Recipient
:rtype: list
"""
try: # That's all due Django 1.7 apps loading.
from django.cont... | python | def _structure_recipients_data(cls, recipients):
"""Converts recipients data into a list of Recipient objects.
:param list recipients: list of objects
:return: list of Recipient
:rtype: list
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idlesign/django-sitemessage | sitemessage/messengers/base.py | MessengerBase.mark_error | def mark_error(self, dispatch, error_log, message_cls):
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Should be used within send().
:param Dispatch dispatch: a Dispatch
:param str error_log: error message
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idlesign/django-sitemessage | sitemessage/messengers/base.py | MessengerBase.mark_failed | def mark_failed(self, dispatch, error_log):
"""Marks a dispatch as failed.
Sitemessage won't try to deliver already failed messages.
Should be used within send().
:param Dispatch dispatch: a Dispatch
:param str error_log: str - error message
"""
dispatch.error_... | python | def mark_failed(self, dispatch, error_log):
"""Marks a dispatch as failed.
Sitemessage won't try to deliver already failed messages.
Should be used within send().
:param Dispatch dispatch: a Dispatch
:param str error_log: str - error message
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idlesign/django-sitemessage | sitemessage/messengers/base.py | MessengerBase._process_messages | def _process_messages(self, messages, ignore_unknown_message_types=False):
"""Performs message processing.
:param dict messages: indexed by message id dict with messages data
:param bool ignore_unknown_message_types: whether to silence exceptions
:raises UnknownMessageTypeError:
... | python | def _process_messages(self, messages, ignore_unknown_message_types=False):
"""Performs message processing.
:param dict messages: indexed by message id dict with messages data
:param bool ignore_unknown_message_types: whether to silence exceptions
:raises UnknownMessageTypeError:
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tg123/bottle-mysql | bottle_mysql.py | MySQLPlugin.setup | def setup(self, app):
'''
Make sure that other installed plugins don't affect the same keyword argument.
'''
for other in app.plugins:
if not isinstance(other, MySQLPlugin):
continue
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'''
Make sure that other installed plugins don't affect the same keyword argument.
'''
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continue
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troeger/opensubmit | web/opensubmit/views/demo.py | assign_role | def assign_role(backend, user, response, *args, **kwargs):
'''
Part of the Python Social Auth Pipeline.
Checks if the created demo user should be pushed into some group.
'''
if backend.name is 'passthrough' and settings.DEMO is True and 'role' in kwargs['request'].session[passthrough.SESSION_VAR]:
... | python | def assign_role(backend, user, response, *args, **kwargs):
'''
Part of the Python Social Auth Pipeline.
Checks if the created demo user should be pushed into some group.
'''
if backend.name is 'passthrough' and settings.DEMO is True and 'role' in kwargs['request'].session[passthrough.SESSION_VAR]:
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troeger/opensubmit | executor/opensubmitexec/server.py | fetch | def fetch(url, fullpath):
'''
Fetch data from an URL and save it under the given target name.
'''
logger.debug("Fetching %s from %s" % (fullpath, url))
try:
tmpfile, headers = urlretrieve(url)
if os.path.exists(fullpath):
os.remove(fullpath)
shutil.move(tmpfile, ... | python | def fetch(url, fullpath):
'''
Fetch data from an URL and save it under the given target name.
'''
logger.debug("Fetching %s from %s" % (fullpath, url))
try:
tmpfile, headers = urlretrieve(url)
if os.path.exists(fullpath):
os.remove(fullpath)
shutil.move(tmpfile, ... | [
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troeger/opensubmit | executor/opensubmitexec/server.py | send_post | def send_post(config, urlpath, post_data):
'''
Send POST data to an OpenSubmit server url path,
according to the configuration.
'''
server = config.get("Server", "url")
logger.debug("Sending executor payload to " + server)
post_data = urlencode(post_data)
post_data = post_data.encode("ut... | python | def send_post(config, urlpath, post_data):
'''
Send POST data to an OpenSubmit server url path,
according to the configuration.
'''
server = config.get("Server", "url")
logger.debug("Sending executor payload to " + server)
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troeger/opensubmit | executor/opensubmitexec/server.py | send_hostinfo | def send_hostinfo(config):
'''
Register this host on OpenSubmit test machine.
'''
info = all_host_infos()
logger.debug("Sending host information: " + str(info))
post_data = [("Config", json.dumps(info)),
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'''
Register this host on OpenSubmit test machine.
'''
info = all_host_infos()
logger.debug("Sending host information: " + str(info))
post_data = [("Config", json.dumps(info)),
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troeger/opensubmit | executor/opensubmitexec/server.py | compatible_api_version | def compatible_api_version(server_version):
'''
Check if this server API version is compatible to us.
'''
try:
semver = server_version.split('.')
if semver[0] != '1':
logger.error(
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'''
Check if this server API version is compatible to us.
'''
try:
semver = server_version.split('.')
if semver[0] != '1':
logger.error(
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troeger/opensubmit | executor/opensubmitexec/server.py | fetch_job | def fetch_job(config):
'''
Fetch any available work from the OpenSubmit server and
return an according job object.
Returns None if no work is available.
Errors are reported by this function directly.
'''
url = "%s/jobs/?Secret=%s&UUID=%s" % (config.get("Server", "url"),
... | python | def fetch_job(config):
'''
Fetch any available work from the OpenSubmit server and
return an according job object.
Returns None if no work is available.
Errors are reported by this function directly.
'''
url = "%s/jobs/?Secret=%s&UUID=%s" % (config.get("Server", "url"),
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troeger/opensubmit | executor/opensubmitexec/server.py | fake_fetch_job | def fake_fetch_job(config, src_dir):
'''
Act like fetch_job, but take the validator file and the student
submission files directly from a directory.
Intended for testing purposes when developing test scripts.
Check also cmdline.py.
'''
logger.debug("Creating fake job from " + src_dir)
... | python | def fake_fetch_job(config, src_dir):
'''
Act like fetch_job, but take the validator file and the student
submission files directly from a directory.
Intended for testing purposes when developing test scripts.
Check also cmdline.py.
'''
logger.debug("Creating fake job from " + src_dir)
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troeger/opensubmit | executor/opensubmitexec/job.py | Job.run_configure | def run_configure(self, mandatory=True):
"""Runs the 'configure' program in the working directory.
Args:
mandatory (bool): Throw exception if 'configure' fails or a
'configure' file is missing.
"""
if not has_file(self.working_dir, 'configure')... | python | def run_configure(self, mandatory=True):
"""Runs the 'configure' program in the working directory.
Args:
mandatory (bool): Throw exception if 'configure' fails or a
'configure' file is missing.
"""
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troeger/opensubmit | executor/opensubmitexec/job.py | Job.run_compiler | def run_compiler(self, compiler=GCC, inputs=None, output=None):
"""Runs a compiler in the working directory.
Args:
compiler (tuple): The compiler program and its command-line arguments,
including placeholders for output and input files.
inputs (tupl... | python | def run_compiler(self, compiler=GCC, inputs=None, output=None):
"""Runs a compiler in the working directory.
Args:
compiler (tuple): The compiler program and its command-line arguments,
including placeholders for output and input files.
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troeger/opensubmit | executor/opensubmitexec/job.py | Job.run_build | def run_build(self, compiler=GCC, inputs=None, output=None):
"""Combined call of 'configure', 'make' and the compiler.
The success of 'configure' and 'make' is optional.
The arguments are the same as for run_compiler.
"""
logger.info("Running build steps ...")
self.run_... | python | def run_build(self, compiler=GCC, inputs=None, output=None):
"""Combined call of 'configure', 'make' and the compiler.
The success of 'configure' and 'make' is optional.
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logger.info("Running build steps ...")
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troeger/opensubmit | executor/opensubmitexec/job.py | Job.spawn_program | def spawn_program(self, name, arguments=[], timeout=30, exclusive=False):
"""Spawns a program in the working directory.
This method allows the interaction with the running program,
based on the returned RunningProgram object.
Args:
name (str): The name of the program... | python | def spawn_program(self, name, arguments=[], timeout=30, exclusive=False):
"""Spawns a program in the working directory.
This method allows the interaction with the running program,
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troeger/opensubmit | executor/opensubmitexec/job.py | Job.run_program | def run_program(self, name, arguments=[], timeout=30, exclusive=False):
"""Runs a program in the working directory to completion.
Args:
name (str): The name of the program to be executed.
arguments (tuple): Command-line arguments for the program.
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"""Runs a program in the working directory to completion.
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name (str): The name of the program to be executed.
arguments (tuple): Command-line arguments for the program.
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troeger/opensubmit | executor/opensubmitexec/job.py | Job.grep | def grep(self, regex):
"""Scans the student files for text patterns.
Args:
regex (str): Regular expression used for scanning inside the files.
Returns:
tuple: Names of the matching files in the working directory.
"""
matches = []
logger... | python | def grep(self, regex):
"""Scans the student files for text patterns.
Args:
regex (str): Regular expression used for scanning inside the files.
Returns:
tuple: Names of the matching files in the working directory.
"""
matches = []
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troeger/opensubmit | executor/opensubmitexec/job.py | Job.ensure_files | def ensure_files(self, filenames):
"""Checks the student submission for specific files.
Args:
filenames (tuple): The list of file names to be cjecked for.
Returns:
bool: Indicator if all files are found in the student archive.
"""
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"""Checks the student submission for specific files.
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filenames (tuple): The list of file names to be cjecked for.
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bool: Indicator if all files are found in the student archive.
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praekelt/django-livechat | livechat/templatetags/livechat_tags.py | live_chat_banner | def live_chat_banner(context):
""" Display any available live chats as advertisements.
"""
context = copy(context)
# Find any upcoming or current live chat. The Chat date must be less than 5
# days away, or currently in progress.
oldchat = LiveChat.chat_finder.get_last_live_chat()
if oldc... | python | def live_chat_banner(context):
""" Display any available live chats as advertisements.
"""
context = copy(context)
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# days away, or currently in progress.
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troeger/opensubmit | executor/opensubmitexec/running.py | kill_longrunning | def kill_longrunning(config):
'''
Terminate everything under the current user account
that has run too long. This is a final safeguard if
the subprocess timeout stuff is not working.
You better have no production servers running also
under the current user account ...
'''... | python | def kill_longrunning(config):
'''
Terminate everything under the current user account
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You better have no production servers running also
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troeger/opensubmit | executor/opensubmitexec/running.py | RunningProgram.get_exitstatus | def get_exitstatus(self):
"""Get the exit status of the program execution.
Returns:
int: Exit status as reported by the operating system,
or None if it is not available.
"""
logger.debug("Exit status is {0}".format(self._spawn.exitstatus))
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"""Get the exit status of the program execution.
Returns:
int: Exit status as reported by the operating system,
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"""
logger.debug("Exit status is {0}".format(self._spawn.exitstatus))
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troeger/opensubmit | executor/opensubmitexec/running.py | RunningProgram.expect_output | def expect_output(self, pattern, timeout=-1):
"""Wait until the running program performs some given output, or terminates.
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pattern: The pattern the output should be checked for.
timeout (int): How many seconds should be waited for the output.
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pattern: The pattern the output should be checked for.
timeout (int): How many seconds should be waited for the output.
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troeger/opensubmit | executor/opensubmitexec/running.py | RunningProgram.sendline | def sendline(self, text):
"""Sends an input line to the running program, including os.linesep.
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text (str): The input text to be send.
Raises:
TerminationException: The program terminated before / while / after sending the input.
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"""Sends an input line to the running program, including os.linesep.
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text (str): The input text to be send.
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troeger/opensubmit | executor/opensubmitexec/running.py | RunningProgram.expect_end | def expect_end(self):
"""Wait for the running program to finish.
Returns:
A tuple with the exit code, as reported by the operating system, and the output produced.
"""
logger.debug("Waiting for termination of '{0}'".format(self.name))
try:
# Make sure we ... | python | def expect_end(self):
"""Wait for the running program to finish.
Returns:
A tuple with the exit code, as reported by the operating system, and the output produced.
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logger.debug("Waiting for termination of '{0}'".format(self.name))
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troeger/opensubmit | executor/opensubmitexec/running.py | RunningProgram.expect_exitstatus | def expect_exitstatus(self, exit_status):
"""Wait for the running program to finish and expect some exit status.
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exit_status (int): The expected exit status.
Raises:
WrongExitStatusException: The produced exit status is not the expected one.
"""
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idlesign/django-sitemessage | sitemessage/views.py | unsubscribe | def unsubscribe(request, message_id, dispatch_id, hashed, redirect_to=None):
"""Handles unsubscribe request.
:param Request request:
:param int message_id:
:param int dispatch_id:
:param str hashed:
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:param str hashed:
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idlesign/django-sitemessage | sitemessage/toolbox.py | schedule_messages | def schedule_messages(messages, recipients=None, sender=None, priority=None):
"""Schedules a message or messages.
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idlesign/django-sitemessage | sitemessage/toolbox.py | send_scheduled_messages | def send_scheduled_messages(priority=None, ignore_unknown_messengers=False, ignore_unknown_message_types=False):
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idlesign/django-sitemessage | sitemessage/toolbox.py | check_undelivered | def check_undelivered(to=None):
"""Sends a notification email if any undelivered dispatches.
Returns undelivered (failed) dispatches count.
:param str|unicode to: Recipient address. If not set Django ADMINS setting is used.
:rtype: int
"""
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idlesign/django-sitemessage | sitemessage/toolbox.py | prepare_dispatches | def prepare_dispatches():
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:rtype: list
"""
dispatches = []
target_messages = Message.get_without_dispatches()
cache = {}
for message_model in target_messages:
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idlesign/django-sitemessage | sitemessage/toolbox.py | get_user_preferences_for_ui | def get_user_preferences_for_ui(user, message_filter=None, messenger_filter=None, new_messengers_titles=None):
"""Returns a two element tuple with user subscription preferences to render in UI.
Message types with the same titles are merged into one row.
First element:
A list of messengers titles.
... | python | def get_user_preferences_for_ui(user, message_filter=None, messenger_filter=None, new_messengers_titles=None):
"""Returns a two element tuple with user subscription preferences to render in UI.
Message types with the same titles are merged into one row.
First element:
A list of messengers titles.
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idlesign/django-sitemessage | sitemessage/toolbox.py | set_user_preferences_from_request | def set_user_preferences_from_request(request):
"""Sets user subscription preferences using data from a request.
Expects data sent by form built with `sitemessage_prefs_table` template tag.
:param request:
:rtype: bool
:return: Flag, whether prefs were found in the request.
"""
prefs = []
... | python | def set_user_preferences_from_request(request):
"""Sets user subscription preferences using data from a request.
Expects data sent by form built with `sitemessage_prefs_table` template tag.
:param request:
:rtype: bool
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troeger/opensubmit | web/opensubmit/admin/gradingscheme.py | GradingSchemeAdmin.formfield_for_dbfield | def formfield_for_dbfield(self, db_field, **kwargs):
''' Offer only gradings that are not used by other schemes, which means they are used by this scheme or not at all.'''
if db_field.name == "gradings":
request=kwargs['request']
try:
#TODO: MockRequst object fro... | python | def formfield_for_dbfield(self, db_field, **kwargs):
''' Offer only gradings that are not used by other schemes, which means they are used by this scheme or not at all.'''
if db_field.name == "gradings":
request=kwargs['request']
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umich-brcf-bioinf/Connor | connor/consam/bamtag.py | build_bam_tags | def build_bam_tags():
'''builds the list of BAM tags to be added to output BAMs'''
#pylint: disable=unused-argument
def _combine_filters(fam, paired_align, align):
filters = [x.filter_value for x in [fam, align] if x and x.filter_value]
if filters:
return ";".join(filters).replac... | python | def build_bam_tags():
'''builds the list of BAM tags to be added to output BAMs'''
#pylint: disable=unused-argument
def _combine_filters(fam, paired_align, align):
filters = [x.filter_value for x in [fam, align] if x and x.filter_value]
if filters:
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praekelt/django-livechat | livechat/context_processors.py | current_livechat | def current_livechat(request):
"""
Checks if a live chat is currently on the go, and add it to the request
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This is to allow the AskMAMA URL in the top-navigation to be redirected to
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views and tags that depends on i... | python | def current_livechat(request):
"""
Checks if a live chat is currently on the go, and add it to the request
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the live chat object view consistently, and to make it available to the
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troeger/opensubmit | web/opensubmit/models/submissionfile.py | upload_path | def upload_path(instance, filename):
'''
Sanitize the user-provided file name, add timestamp for uniqness.
'''
filename = filename.replace(" ", "_")
filename = unicodedata.normalize('NFKD', filename).lower()
return os.path.join(str(timezone.now().date().isoformat()), filename) | python | def upload_path(instance, filename):
'''
Sanitize the user-provided file name, add timestamp for uniqness.
'''
filename = filename.replace(" ", "_")
filename = unicodedata.normalize('NFKD', filename).lower()
return os.path.join(str(timezone.now().date().isoformat()), filename) | [
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troeger/opensubmit | web/opensubmit/models/submissionfile.py | SubmissionFile.is_archive | def is_archive(self):
'''
Determines if the attachment is an archive.
'''
try:
if zipfile.is_zipfile(self.attachment.path) or tarfile.is_tarfile(self.attachment.path):
return True
except Exception:
pass
return False | python | def is_archive(self):
'''
Determines if the attachment is an archive.
'''
try:
if zipfile.is_zipfile(self.attachment.path) or tarfile.is_tarfile(self.attachment.path):
return True
except Exception:
pass
return False | [
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troeger/opensubmit | web/opensubmit/social/passthrough.py | PassThroughAuth.get_user_details | def get_user_details(self, response):
""" Complete with additional information from session, as available. """
result = {
'id': response['id'],
'username': response.get('username', None),
'email': response.get('email', None),
'first_name': response.get('fi... | python | def get_user_details(self, response):
""" Complete with additional information from session, as available. """
result = {
'id': response['id'],
'username': response.get('username', None),
'email': response.get('email', None),
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umich-brcf-bioinf/Connor | connor/consam/readers.py | paired_reader_from_bamfile | def paired_reader_from_bamfile(args,
log,
usage_logger,
annotated_writer):
'''Given a BAM file, return a generator that yields filtered, paired reads'''
total_aligns = pysamwrapper.total_align_count(args.input_bam)
... | python | def paired_reader_from_bamfile(args,
log,
usage_logger,
annotated_writer):
'''Given a BAM file, return a generator that yields filtered, paired reads'''
total_aligns = pysamwrapper.total_align_count(args.input_bam)
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troeger/opensubmit | executor/opensubmitexec/hostinfo.py | opencl | def opencl():
'''
Determine some system information about the installed OpenCL device.
'''
result = []
try:
import pyopencl as ocl
for plt in ocl.get_platforms():
result.append("Platform: " + platform.name)
for device in plt.get_devices():
... | python | def opencl():
'''
Determine some system information about the installed OpenCL device.
'''
result = []
try:
import pyopencl as ocl
for plt in ocl.get_platforms():
result.append("Platform: " + platform.name)
for device in plt.get_devices():
... | [
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troeger/opensubmit | executor/opensubmitexec/hostinfo.py | all_host_infos | def all_host_infos():
'''
Summarize all host information.
'''
output = []
output.append(["Operating system", os()])
output.append(["CPUID information", cpu()])
output.append(["CC information", compiler()])
output.append(["JDK information", from_cmd("java -version")])
output.appen... | python | def all_host_infos():
'''
Summarize all host information.
'''
output = []
output.append(["Operating system", os()])
output.append(["CPUID information", cpu()])
output.append(["CC information", compiler()])
output.append(["JDK information", from_cmd("java -version")])
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umich-brcf-bioinf/Connor | connor/family.py | CoordinateFamilyHolder._completed_families | def _completed_families(self, reference_name, rightmost_boundary):
'''returns one or more families whose end < rightmost boundary'''
in_progress = self._right_coords_in_progress[reference_name]
while len(in_progress):
right_coord = in_progress[0]
if right_coord < rightmos... | python | def _completed_families(self, reference_name, rightmost_boundary):
'''returns one or more families whose end < rightmost boundary'''
in_progress = self._right_coords_in_progress[reference_name]
while len(in_progress):
right_coord = in_progress[0]
if right_coord < rightmos... | [
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troeger/opensubmit | web/opensubmit/mails.py | inform_student | def inform_student(submission, request, state):
'''
Create an email message for the student,
based on the given submission state.
Sending eMails on validation completion does
not work, since this may have been triggered
by the admin.
'''
details_url = request.build_absolute_uri(reverse(... | python | def inform_student(submission, request, state):
'''
Create an email message for the student,
based on the given submission state.
Sending eMails on validation completion does
not work, since this may have been triggered
by the admin.
'''
details_url = request.build_absolute_uri(reverse(... | [
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troeger/opensubmit | web/opensubmit/models/course.py | Course.graded_submissions | def graded_submissions(self):
'''
Queryset for the graded submissions, which are worth closing.
'''
qs = self._valid_submissions().filter(state__in=[Submission.GRADED])
return qs | python | def graded_submissions(self):
'''
Queryset for the graded submissions, which are worth closing.
'''
qs = self._valid_submissions().filter(state__in=[Submission.GRADED])
return qs | [
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troeger/opensubmit | web/opensubmit/models/course.py | Course.authors | def authors(self):
'''
Queryset for all distinct authors this course had so far. Important for statistics.
Note that this may be different from the list of people being registered for the course,
f.e. when they submit something and the leave the course.
'''
qs... | python | def authors(self):
'''
Queryset for all distinct authors this course had so far. Important for statistics.
Note that this may be different from the list of people being registered for the course,
f.e. when they submit something and the leave the course.
'''
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troeger/opensubmit | web/opensubmit/signalhandlers.py | post_user_login | def post_user_login(sender, request, user, **kwargs):
"""
Create a profile for the user, when missing.
Make sure that all neccessary user groups exist and have the right permissions.
We need that automatism for people not calling the configure tool,
admin rights for admins after the ... | python | def post_user_login(sender, request, user, **kwargs):
"""
Create a profile for the user, when missing.
Make sure that all neccessary user groups exist and have the right permissions.
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troeger/opensubmit | web/opensubmit/signalhandlers.py | submissionfile_post_save | def submissionfile_post_save(sender, instance, signal, created, **kwargs):
'''
Update MD5 field for newly uploaded files.
'''
if created:
logger.debug("Running post-processing for new submission file.")
instance.md5 = instance.attachment_md5()
instance.save() | python | def submissionfile_post_save(sender, instance, signal, created, **kwargs):
'''
Update MD5 field for newly uploaded files.
'''
if created:
logger.debug("Running post-processing for new submission file.")
instance.md5 = instance.attachment_md5()
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troeger/opensubmit | web/opensubmit/signalhandlers.py | submission_post_save | def submission_post_save(sender, instance, **kwargs):
''' Several sanity checks after we got a valid submission object.'''
logger.debug("Running post-processing for submission")
# Make the submitter an author
if instance.submitter not in instance.authors.all():
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''' Several sanity checks after we got a valid submission object.'''
logger.debug("Running post-processing for submission")
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idlesign/django-sitemessage | sitemessage/messages/base.py | MessageBase.get_subscribers | def get_subscribers(cls, active_only=True):
"""Returns a list of Recipient objects subscribed for this message type.
:param bool active_only: Flag whether
:return:
"""
subscribers_raw = Subscription.get_for_message_cls(cls.alias)
subscribers = []
for subscriber ... | python | def get_subscribers(cls, active_only=True):
"""Returns a list of Recipient objects subscribed for this message type.
:param bool active_only: Flag whether
:return:
"""
subscribers_raw = Subscription.get_for_message_cls(cls.alias)
subscribers = []
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idlesign/django-sitemessage | sitemessage/messages/base.py | MessageBase._get_url | def _get_url(cls, name, message_model, dispatch_model):
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:param str name: URL name
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:param Dispatch|None dispatch_model:
:return:
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url = ''
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"""Returns a common pattern sitemessage URL.
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:param Dispatch|None dispatch_model:
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idlesign/django-sitemessage | sitemessage/messages/base.py | MessageBase.handle_unsubscribe_request | def handle_unsubscribe_request(cls, request, message, dispatch, hash_is_valid, redirect_to):
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:param Request request: Request instance
:param Message message: Message model instance
:param Dispatch dispatch: Dispatch model instance
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idlesign/django-sitemessage | sitemessage/messages/base.py | MessageBase.handle_mark_read_request | def handle_mark_read_request(cls, request, message, dispatch, hash_is_valid, redirect_to):
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:param Request request: Request instance
:param Message message: Message model instance
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idlesign/django-sitemessage | sitemessage/messages/base.py | MessageBase.get_template | def get_template(cls, message, messenger):
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2. `template` field of message class;
3. deduced from message, messenger data and `template_ext` message type field
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1. `tpl` field of message context;
2. `template` field of message class;
3. deduced from message, messenger data and `template_ext` message type field
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idlesign/django-sitemessage | sitemessage/messages/base.py | MessageBase.compile | def compile(cls, message, messenger, dispatch=None):
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Otherwise a SIMPLE_TEXT_ID field from message context is used as message contents.
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"""Compiles and returns a message text.
Considers `use_tpl` field from message context to decide whether
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idlesign/django-sitemessage | sitemessage/messages/base.py | MessageBase.prepare_dispatches | def prepare_dispatches(cls, message, recipients=None):
"""Creates Dispatch models for a given message and return them.
:param Message message: Message model instance
:param list|None recipients: A list or Recipient objects
:return: list of created Dispatch models
:rtype: list
... | python | def prepare_dispatches(cls, message, recipients=None):
"""Creates Dispatch models for a given message and return them.
:param Message message: Message model instance
:param list|None recipients: A list or Recipient objects
:return: list of created Dispatch models
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idlesign/django-sitemessage | sitemessage/messengers/facebook.py | FacebookMessenger.get_page_access_token | def get_page_access_token(self, app_id, app_secret, user_token):
"""Returns a dictionary of never expired page token indexed by page names.
:param str app_id: Application ID
:param str app_secret: Application secret
:param str user_token: User short-lived token
:rtype: dict
... | python | def get_page_access_token(self, app_id, app_secret, user_token):
"""Returns a dictionary of never expired page token indexed by page names.
:param str app_id: Application ID
:param str app_secret: Application secret
:param str user_token: User short-lived token
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troeger/opensubmit | executor/opensubmitexec/filesystem.py | create_working_dir | def create_working_dir(config, prefix):
'''
Create a fresh temporary directory, based on the fiven prefix.
Returns the new path.
'''
# Fetch base directory from executor configuration
basepath = config.get("Execution", "directory")
if not prefix:
prefix = 'opensubmit'
f... | python | def create_working_dir(config, prefix):
'''
Create a fresh temporary directory, based on the fiven prefix.
Returns the new path.
'''
# Fetch base directory from executor configuration
basepath = config.get("Execution", "directory")
if not prefix:
prefix = 'opensubmit'
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troeger/opensubmit | executor/opensubmitexec/filesystem.py | prepare_working_directory | def prepare_working_directory(job, submission_path, validator_path):
'''
Based on two downloaded files in the working directory,
the student submission and the validation package,
the working directory is prepared.
We unpack student submission first, so that teacher files overwrite
them in case... | python | def prepare_working_directory(job, submission_path, validator_path):
'''
Based on two downloaded files in the working directory,
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troeger/opensubmit | web/opensubmit/cmdline.py | django_admin | def django_admin(args):
'''
Run something like it would be done through Django's manage.py.
'''
from django.core.management import execute_from_command_line
from django.core.exceptions import ImproperlyConfigured
os.environ.setdefault("DJANGO_SETTINGS_MODULE", "opensubmit.settings")
try:... | python | def django_admin(args):
'''
Run something like it would be done through Django's manage.py.
'''
from django.core.management import execute_from_command_line
from django.core.exceptions import ImproperlyConfigured
os.environ.setdefault("DJANGO_SETTINGS_MODULE", "opensubmit.settings")
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troeger/opensubmit | web/opensubmit/cmdline.py | check_path | def check_path(file_path):
'''
Checks if the directories for this path exist, and creates them in case.
'''
directory = os.path.dirname(file_path)
if directory != '':
if not os.path.exists(directory):
os.makedirs(directory, 0o775) | python | def check_path(file_path):
'''
Checks if the directories for this path exist, and creates them in case.
'''
directory = os.path.dirname(file_path)
if directory != '':
if not os.path.exists(directory):
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troeger/opensubmit | web/opensubmit/cmdline.py | check_file | def check_file(filepath):
'''
- Checks if the parent directories for this path exist.
- Checks that the file exists.
- Donates the file to the web server user.
TODO: This is Debian / Ubuntu specific.
'''
check_path(filepath)
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print... | python | def check_file(filepath):
'''
- Checks if the parent directories for this path exist.
- Checks that the file exists.
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TODO: This is Debian / Ubuntu specific.
'''
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troeger/opensubmit | web/opensubmit/cmdline.py | check_web_config_consistency | def check_web_config_consistency(config):
'''
Check the web application config file for consistency.
'''
login_conf_deps = {
'LOGIN_TWITTER_OAUTH_KEY': ['LOGIN_TWITTER_OAUTH_SECRET'],
'LOGIN_GOOGLE_OAUTH_KEY': ['LOGIN_GOOGLE_OAUTH_SECRET'],
'LOGIN_GITHUB_OAUTH_KEY': ['LOGIN_G... | python | def check_web_config_consistency(config):
'''
Check the web application config file for consistency.
'''
login_conf_deps = {
'LOGIN_TWITTER_OAUTH_KEY': ['LOGIN_TWITTER_OAUTH_SECRET'],
'LOGIN_GOOGLE_OAUTH_KEY': ['LOGIN_GOOGLE_OAUTH_SECRET'],
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troeger/opensubmit | web/opensubmit/cmdline.py | check_web_config | def check_web_config(config_fname):
'''
Try to load the Django settings.
If this does not work, than settings file does not exist.
Returns:
Loaded configuration, or None.
'''
print("Looking for config file at {0} ...".format(config_fname))
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... | python | def check_web_config(config_fname):
'''
Try to load the Django settings.
If this does not work, than settings file does not exist.
Returns:
Loaded configuration, or None.
'''
print("Looking for config file at {0} ...".format(config_fname))
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nitely/kua | kua/routes.py | normalize_url | def normalize_url(url: str) -> str:
"""
Remove leading and trailing slashes from a URL
:param url: URL
:return: URL with no leading and trailing slashes
:private:
"""
if url.startswith('/'):
url = url[1:]
if url.endswith('/'):
url = url[:-1]
return url | python | def normalize_url(url: str) -> str:
"""
Remove leading and trailing slashes from a URL
:param url: URL
:return: URL with no leading and trailing slashes
:private:
"""
if url.startswith('/'):
url = url[1:]
if url.endswith('/'):
url = url[:-1]
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nitely/kua | kua/routes.py | _unwrap | def _unwrap(variable_parts: VariablePartsType):
"""
Yield URL parts. The given parts are usually in reverse order.
"""
curr_parts = variable_parts
var_any = []
while curr_parts:
curr_parts, (var_type, part) = curr_parts
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"""
Yield URL parts. The given parts are usually in reverse order.
"""
curr_parts = variable_parts
var_any = []
while curr_parts:
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nitely/kua | kua/routes.py | make_params | def make_params(
key_parts: Sequence[str],
variable_parts: VariablePartsType) -> Dict[str, Union[str, Tuple[str]]]:
"""
Map keys to variables. This map\
URL-pattern variables to\
a URL related parts
:param key_parts: A list of URL parts
:param variable_parts: A linked-list\
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key_parts: Sequence[str],
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Map keys to variables. This map\
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nitely/kua | kua/routes.py | Routes._deconstruct_url | def _deconstruct_url(self, url: str) -> List[str]:
"""
Split a regular URL into parts
:param url: A normalized URL
:return: Parts of the URL
:raises kua.routes.RouteError: \
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Split a regular URL into parts
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nitely/kua | kua/routes.py | Routes._match | def _match(self, parts: Sequence[str]) -> RouteResolved:
"""
Match URL parts to a registered pattern.
This function is basically where all\
the CPU-heavy work is done.
:param parts: URL parts
:return: Matched route
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"""
Match URL parts to a registered pattern.
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nitely/kua | kua/routes.py | Routes.match | def match(self, url: str) -> RouteResolved:
"""
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:param url: URL
:return: Matched route
:raises kua.RouteError: If there is no match
"""
url = normalize_url(url)
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"""
Match a URL to a registered pattern.
:param url: URL
:return: Matched route
:raises kua.RouteError: If there is no match
"""
url = normalize_url(url)
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nitely/kua | kua/routes.py | Routes.add | def add(self, url: str, anything: Any) -> None:
"""
Register a URL pattern into\
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It's possible to attach any kind of\
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retrieving. A dict with methods and callbacks,\
for example. Anything really.
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idlesign/django-sitemessage | sitemessage/utils.py | get_site_url | def get_site_url():
"""Returns a URL for current site.
:rtype: str|unicode
"""
site_url = getattr(_THREAD_LOCAL, _THREAD_SITE_URL, None)
if site_url is None:
site_url = SITE_URL or get_site_url_()
setattr(_THREAD_LOCAL, _THREAD_SITE_URL, site_url)
return site_url | python | def get_site_url():
"""Returns a URL for current site.
:rtype: str|unicode
"""
site_url = getattr(_THREAD_LOCAL, _THREAD_SITE_URL, None)
if site_url is None:
site_url = SITE_URL or get_site_url_()
setattr(_THREAD_LOCAL, _THREAD_SITE_URL, site_url)
return site_url | [
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idlesign/django-sitemessage | sitemessage/utils.py | get_message_type_for_app | def get_message_type_for_app(app_name, default_message_type_alias):
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Supposed to be used by reusable applications authors,
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idlesign/django-sitemessage | sitemessage/utils.py | recipients | def recipients(messenger, addresses):
"""Structures recipients data.
:param str|unicode, MessageBase messenger: MessengerBase heir
:param list[str|unicode]|str|unicode addresses: recipients addresses or Django User
model heir instances (NOTE: if supported by a messenger)
:return: list of Recip... | python | def recipients(messenger, addresses):
"""Structures recipients data.
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] | 25b179b798370354c5988042ec209e255d23793f | https://github.com/idlesign/django-sitemessage/blob/25b179b798370354c5988042ec209e255d23793f/sitemessage/utils.py#L183-L196 | train | 64,188 |
praekelt/django-livechat | livechat/models.py | LiveChatManager.upcoming_live_chat | def upcoming_live_chat(self):
"""
Find any upcoming or current live chat to advertise on the home page or
live chat page.
These are LiveChat's with primary category of 'ask-mama' and category
of 'live-chat'. The Chat date must be less than 5 days away, or
happening now.
... | python | def upcoming_live_chat(self):
"""
Find any upcoming or current live chat to advertise on the home page or
live chat page.
These are LiveChat's with primary category of 'ask-mama' and category
of 'live-chat'. The Chat date must be less than 5 days away, or
happening now.
... | [
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praekelt/django-livechat | livechat/models.py | LiveChatManager.get_current_live_chat | def get_current_live_chat(self):
""" Check if there is a live chat on the go, so that we should take
over the AskMAMA page with the live chat.
"""
now = datetime.now()
chat = self.upcoming_live_chat()
if chat and chat.is_in_progress():
return chat
... | python | def get_current_live_chat(self):
""" Check if there is a live chat on the go, so that we should take
over the AskMAMA page with the live chat.
"""
now = datetime.now()
chat = self.upcoming_live_chat()
if chat and chat.is_in_progress():
return chat
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praekelt/django-livechat | livechat/models.py | LiveChatManager.get_last_live_chat | def get_last_live_chat(self):
""" Check if there is a live chat that ended in the last 3 days, and
return it. We will display a link to it on the articles page.
"""
now = datetime.now()
lcqs = self.get_query_set()
lcqs = lcqs.filter(
chat_ends_at__lte=now... | python | def get_last_live_chat(self):
""" Check if there is a live chat that ended in the last 3 days, and
return it. We will display a link to it on the articles page.
"""
now = datetime.now()
lcqs = self.get_query_set()
lcqs = lcqs.filter(
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praekelt/django-livechat | livechat/models.py | LiveChat.comment_set | def comment_set(self):
""" Get the comments that have been submitted for the chat
"""
ct = ContentType.objects.get_for_model(self.__class__)
qs = Comment.objects.filter(
content_type=ct,
object_pk=self.pk)
qs = qs.exclude(is_removed=True)
qs = qs.o... | python | def comment_set(self):
""" Get the comments that have been submitted for the chat
"""
ct = ContentType.objects.get_for_model(self.__class__)
qs = Comment.objects.filter(
content_type=ct,
object_pk=self.pk)
qs = qs.exclude(is_removed=True)
qs = qs.o... | [
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idlesign/django-sitemessage | sitemessage/models.py | _get_dispatches | def _get_dispatches(filter_kwargs):
"""Simplified version. Not distributed friendly."""
dispatches = Dispatch.objects.prefetch_related('message').filter(
**filter_kwargs
).order_by('-message__time_created')
return list(dispatches) | python | def _get_dispatches(filter_kwargs):
"""Simplified version. Not distributed friendly."""
dispatches = Dispatch.objects.prefetch_related('message').filter(
**filter_kwargs
).order_by('-message__time_created')
return list(dispatches) | [
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idlesign/django-sitemessage | sitemessage/models.py | _get_dispatches_for_update | def _get_dispatches_for_update(filter_kwargs):
"""Distributed friendly version using ``select for update``."""
dispatches = Dispatch.objects.prefetch_related('message').filter(
**filter_kwargs
).select_for_update(
**GET_DISPATCHES_ARGS[1]
).order_by('-message__time_created')
try:... | python | def _get_dispatches_for_update(filter_kwargs):
"""Distributed friendly version using ``select for update``."""
dispatches = Dispatch.objects.prefetch_related('message').filter(
**filter_kwargs
).select_for_update(
**GET_DISPATCHES_ARGS[1]
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troeger/opensubmit | web/opensubmit/models/submission.py | Submission.author_list | def author_list(self):
''' The list of authors als text, for admin submission list overview.'''
author_list = [self.submitter] + \
[author for author in self.authors.all().exclude(pk=self.submitter.pk)]
return ",\n".join([author.get_full_name() for author in author_list]) | python | def author_list(self):
''' The list of authors als text, for admin submission list overview.'''
author_list = [self.submitter] + \
[author for author in self.authors.all().exclude(pk=self.submitter.pk)]
return ",\n".join([author.get_full_name() for author in author_list]) | [
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troeger/opensubmit | web/opensubmit/models/submission.py | Submission.grading_status_text | def grading_status_text(self):
'''
A rendering of the grading that is an answer on the question
"Is grading finished?".
Used in duplicate view and submission list on the teacher backend.
'''
if self.assignment.is_graded():
if self.is_grading_finished():
... | python | def grading_status_text(self):
'''
A rendering of the grading that is an answer on the question
"Is grading finished?".
Used in duplicate view and submission list on the teacher backend.
'''
if self.assignment.is_graded():
if self.is_grading_finished():
... | [
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troeger/opensubmit | web/opensubmit/models/submission.py | Submission.grading_value_text | def grading_value_text(self):
'''
A rendering of the grading that is an answer to the question
"What is the grade?".
'''
if self.assignment.is_graded():
if self.is_grading_finished():
return str(self.grading)
else:
return st... | python | def grading_value_text(self):
'''
A rendering of the grading that is an answer to the question
"What is the grade?".
'''
if self.assignment.is_graded():
if self.is_grading_finished():
return str(self.grading)
else:
return st... | [
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troeger/opensubmit | web/opensubmit/models/submission.py | Submission.grading_means_passed | def grading_means_passed(self):
'''
Information if the given grading means passed.
Non-graded assignments are always passed.
'''
if self.assignment.is_graded():
if self.grading and self.grading.means_passed:
return True
else:
... | python | def grading_means_passed(self):
'''
Information if the given grading means passed.
Non-graded assignments are always passed.
'''
if self.assignment.is_graded():
if self.grading and self.grading.means_passed:
return True
else:
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troeger/opensubmit | web/opensubmit/models/submission.py | Submission.can_modify | def can_modify(self, user=None):
"""Determines whether the submission can be modified.
Returns a boolean value.
The 'user' parameter is optional and additionally checks whether
the given user is authorized to perform these actions.
This function checks the submission states and ... | python | def can_modify(self, user=None):
"""Determines whether the submission can be modified.
Returns a boolean value.
The 'user' parameter is optional and additionally checks whether
the given user is authorized to perform these actions.
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