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Consider a transportation problem with sets of sources and sinks. There are profits and prices on the edges. |
We initiate the study of coresets for clustering in graph metrics, i.e., the shortest-path metric of edge-weighted graphs. Such clustering problems are essential to data analysis and used for example in road networks and data visualization. |
$\newcommand{\cala}{\mathcal{A}}$ In MAXSPACE, given a set of ads $\cala$, one wants to schedule a subset ${\cala'\subseteq\cala}$ into $K$ slots ${B_1, \dots, B_K}$ of size $L$. Each ad ${A_i \in \cala}$ has a size $s_i$ and a frequency $w_i$. |
In this paper, we introduce the problem of Matroid-Constrained Vertex Cover: given a graph with weights on the edges and a matroid imposed on the vertices, our problem is to choose a subset of vertices that is independent in the matroid, with the objective of maximizing the total weight of covered edges. This problem ... |
We study stationary online bipartite matching, where both types of nodes--offline and online--arrive according to Poisson processes. Offline nodes wait to be matched for some random time, determined by an exponential distribution, while online nodes need to be matched immediately. |
We prove a robust contraction decomposition theorem for $H$-minor-free graphs, which states that given an $H$-minor-free graph $G$ and an integer $p$, one can partition in polynomial time the vertices of $G$ into $p$ sets $Z_1,\dots,Z_p$ such that $\operatorname{tw}(G/(Z_i \setminus Z')) = O(p + |Z'|)$ for all ... |
The priority model of "greedy-like" algorithms was introduced by Borodin, Nielsen, and Rackoff in 2002. We augment this model by allowing priority algorithms to have access to advice, i.e., side information precomputed by an all-powerful oracle. |
We give an FPTAS and an efficient sampling algorithm for the high-fugacity hard-core model on bounded-degree bipartite expander graphs and the low-temperature ferromagnetic Potts model on bounded-degree expander graphs. The results apply, for example, to random (bipartite) $\Delta$-regular graphs, for which no efficie... |
Let ${\cal G}$ be a minor-closed graph class and let $G$ be an $n$-vertex graph. We say that $G$ is a $k$-apex of ${\cal G}$ if $G$ contains a set $S$ of at most $k$ vertices such that $G\setminus S$ belongs to ${\cal G}$. |
Hypergraph partitioning has a wide range of important applications such as VLSI design or scientific computing. With focus on solution quality, we develop the first multilevel memetic algorithm to tackle the problem. |
The classical, ubiquitous, predecessor problem is to construct a data structure for a set of integers that supports fast predecessor queries. Its generalization to weighted trees, a.k.a. the weighted ancestor problem, has been extensively explored and successfully reduced to the predecessor problem. |
The traveling tournament problem is a well-known benchmark problem of the sports scheduling. We propose an approximation algorithm for the traveling tournament problem with the constraints such that both the number of consecutive home games and that of consecutive away games are at most two (called TTP(2)). |
Since a few years there is an increasing interest in minimizing the energy consumption of computing systems. However in a shared computing system, users want to optimize their experienced quality of service, at the price of a high energy consumption. |
Interactive coding allows two parties to conduct a distributed computation despite noise corrupting a certain fraction of their communication. Dani et al. |
We establish new algorithmic guarantees with matching hardness results for coloring and independent set problems in one-sided expanders and related classes of graphs. For example, given a $3$-colorable regular one-sided expander, we compute in polynomial time either an independent set of relative size at least $1/2-o(... |
We present two new combinatorial tools for the design of parameterized algorithms. The first is a simple linear time randomized algorithm that given as input a $d$-degenerate graph $G$ and an integer $k$, outputs an independent set $Y$, such that for every independent set $X$ in $G$ of size at most $k$, the probabilit... |
Is matching in NC, i.e., is there a deterministic fast parallel algorithm for it? This has been an outstanding open question in TCS for over three decades, ever since the discovery of randomized NC matching algorithms [KUW85, MVV87]. |
In the knapsack problem under explorable uncertainty, we are given a knapsack instance with uncertain item profits. Instead of having access to the precise profits, we are only given uncertainty intervals that are guaranteed to contain the corresponding profits. |
In this article we study the stable marriage game induced by the men-proposing Gale-Shapley algorithm. Our setting is standard: all the lists are complete and the matching mechanism is the men-proposing Gale-Shapley algorithm. |
Near repeat (NR) is a well known phenomenon in crime analysis assuming that crime events exhibit correlations within a given time and space frame. Traditional NR calculation generates 2 event pairs if 2 events happened within a given space and time limit. |
We present efficient data structures for submatrix maximum queries in Monge matrices and Monge partial matrices. For $n\times n$ Monge matrices, we give a data structure that requires O(n) space and answers submatrix maximum queries in $O(\log n)$ time. |
The MULTICUT problem, given a graph G, a set of terminal pairs T={(s_i,t_i) | 1 <= i <= r} and an integer p, asks whether one can find a cutset consisting of at most p non-terminal vertices that separates all the terminal pairs, i.e., after removing the cutset, t_i is not reachable from s_i for each 1 <= i <... |
The Gibbs Sampler is a general method for sampling high-dimensional distributions, dating back to Turchin, 1971. In each step of the Gibbs Sampler, we pick a random coordinate and re-sample that coordinate from the distribution induced by fixing all other coordinates. |
A string matching -- and more generally, sequence matching -- algorithm is presented that has a linear worst-case computing time bound, a low worst-case bound on the number of comparisons (2n), and sublinear average-case behavior that is better than that of the fastest versions of the Boyer-Moore algorithm. The algori... |
We consider composition orderings for linear functions of one variable. Given $n$ linear functions $f_1,\dots,f_n$ and a constant $c$, the objective is to find a permutation $\sigma$ that minimizes/maximizes $f_{\sigma(n)}\circ\dots\circ f_{\sigma(1)}(c)$. |
We study convergence of the following discrete-time non-linear dynamical system: n agents are located in R^d and at every time step, each moves synchronously to the average location of all agents within a unit distance of it. This popularly studied system was introduced by Krause to model the dynamics of opinion forma... |
We extend the left-to-right Lyndon factorisation of a word to the left Lyndon tree construction of a Lyndon word. It yields an algorithm to sort the prefixes of a Lyndon word according to the infinite ordering defined by Dolce et al. (2019). |
We address the question of whether the primal-dual approach for the design and analysis of online algorithms can be applied to nonmonotone problems. We provide a positive answer by presenting a primal-dual analysis to the online algorithm of Awerbuch et al. |
A basic task in bioinformatics is the counting of $k$-mers in genome strings. The $k$-mer counting problem is to build a histogram of all substrings of length $k$ in a given genome sequence. |
We present a deterministic way of assigning small (log bit) weights to the edges of a bipartite planar graph so that the minimum weight perfect matching becomes unique. The isolation lemma as described in (Mulmuley et al. 1987) achieves the same for general graphs using a randomized weighting scheme, whereas we can do... |
A graph $G = (V,E)$ is called equistable if there exist a positive integer $t$ and a weight function $w : V \to \mathbb{N}$ such that $S \subseteq V$ is a maximal stable set of $G$ if and only if $w(S) = t$. Such a function $w$ is called an equistable function of $G$. |
Maintaining an archive of all non-dominated points is a standard task in multi-objective optimization. Sometimes it is sufficient to store all evaluated points and to obtain the non-dominated subset in a post-processing step. |
We present a polynomial time algorithm that for any graph G and integer k >= 0, either finds a spanning tree with at least k internal vertices, or outputs a new graph G' on at most 3k vertices and an integer k' such that G has a spanning tree with at least k internal vertices if and only if G' has a span... |
Star-shaped bodies are an important nonconvex generalization of convex bodies (e.g., linear programming with violations). Here we present an efficient algorithm for sampling a given star-shaped body. |
In this paper, we investigate the computational complexity of subgraph reconfiguration problems in directed graphs. More specifically, we focus on the problem of reconfiguring arborescences in a digraph, where an arborescence is a directed graph such that its underlying undirected graph forms a tree and all vertices h... |
In a directed graph $G$ with non-correlated edge lengths and costs, the \emph{network design problem with bounded distances} asks for a cost-minimal spanning subgraph subject to a length bound for all node pairs. We give a bi-criteria $(2+\varepsilon,O(n^{0.5+\varepsilon}))$-approximation for this problem. |
{\sc Directed Feedback Vertex Set (DFVS)} is a fundamental computational problem that has received extensive attention in parameterized complexity. In this paper, we initiate the study of a wide generalization, the {\sc ${\cal H}$-free SCC Deletion} problem. |
The Matrix Spencer Conjecture asks whether given $n$ symmetric matrices in $\mathbb{R}^{n \times n}$ with eigenvalues in $[-1,1]$ one can always find signs so that their signed sum has singular values bounded by $O(\sqrt{n})$. The standard approach in discrepancy requires proving that the convex body of all good fract... |
Fair resource allocation is a fundamental optimization problem with applications in operations research, networking, and economic and game theory. Research in these areas has led to the general acceptance of a class of $\alpha$-fair utility functions parameterized by $\alpha \in [0, \infty]$. |
The simple random walk on $\mathbb{Z}^p$ shows two drastically different behaviours depending on the value of $p$: it is recurrent when $p\in\{1,2\}$ while it escapes (with a rate increasing with $p$) as soon as $p\geq3$. This classical example illustrates that the asymptotic properties of a random walk provides some ... |
Graphlet analysis is an approach to network analysis that is particularly popular in bioinformatics. We show how to set up a system of linear equations that relate the orbit counts and can be used in an algorithm that is significantly faster than the existing approaches based on direct enumeration of graphlets. |
In an empirical comparisons of algorithms we might compare run times over a set of benchmark problems to decide which one is fastest, i.e. an algorithmic horse race. Ideally we would like to download source code for the algorithms, compile and then run on our machine. |
In this paper we initiate a systematic study of exact algorithms for well-known clustering problems, namely $k$-Median and $k$-Means. In $k$-Median, the input consists of a set $X$ of $n$ points belonging to a metric space, and the task is to select a subset $C \subseteq X$ of $k$ points as centers, such that the sum ... |
We provide theoretical insights around the cutwidth of a graph and the One-Sided Crossing Minimization (OSCM) problem. OSCM was posed in the Parameterized Algorithms and Computational Experiments Challenge 2024, where the cutwidth of the input graph was the parameter in the parameterized track. |
The problem of finding aperiodic low auto-correlation binary sequences (LABS) presents a significant computational challenge, particularly as the sequence length increases. Such sequences have important applications in communication engineering, physics, chemistry, and cryptography. |
We consider Online Minimum Bipartite Matching under the uniform metric. We show that Randomized Greedy achieves a competitive ratio equal to $(1+1/n) (H_{n+1}-1)$, which matches the lower bound. |
Lovász conjectured that every connected 4-regular planar graph G admits a realization as a system of circles, i.e., it can be drawn on the plane utilizing a set of circles, such that the vertices of G correspond to the intersection and touching points of the circles and the edges of G are the arc segments among pairs o... |
In the unit-cost comparison model, a black box takes an input two items and outputs the result of the comparison. Problems like sorting and searching have been studied in this model, and it has been generalized to include the concept of priced information, where different pairs of items (say database records) have dif... |
Phylogenetic trees are leaf-labelled trees used to model the evolution of species. In practice it is not uncommon to obtain two topologically distinct trees for the same set of species, and this motivates the use of distance measures to quantify dissimilarity. |
We present a new approach called GR (Graph Reduction) algorithm for searching loop-less k-shortest paths (1st to k-th shortest paths) in a graph based on graph reduction. Let a source vertex and a target vertex of k-shortest paths be v_s and v_t respectively. |
Bloom filter is a widely used classic data structure for approximate membership queries. Learned Bloom filters improve memory efficiency by leveraging machine learning, with the partitioned learned Bloom filter (PLBF) being among the most memory-efficient variants. |
The Independent Cascade Model (ICM) is a widely studied model that aims to capture the dynamics of the information diffusion in social networks and in general complex networks. In this model, we can distinguish between active nodes which spread the information and inactive ones. |
We study the $p$-generalized probit regression model, which is a generalized linear model for binary responses. It extends the standard probit model by replacing its link function, the standard normal cdf, by a $p$-generalized normal distribution for $p\in[1, \infty)$. |
We consider the classical problem of scheduling $n$ jobs with release dates on both single and identical parallel machines. We measure the quality of service provided to each job by its stretch, which is defined as the ratio of its response time to processing time. |
The ancestral maximum-likelihood and phylogeography problems are two fundamental problems involving evolutionary studies. The ancestral maximum-likelihood problem involves identifying a rooted tree alongside internal node sequences that maximizes the probability of observing a given set of sequences as leaves. |
We consider distributed computations between two parties carried out over a noisy channel that may erase messages. Following a noise model proposed by Dani et al. (2018), the noise level observed by the parties during the computation in our setting is arbitrary and a priori unknown to the parties. |
We consider the problem of locating a black hole in synchronous anonymous networks using finite state agents. A black hole is a harmful node in the network that destroys any agent visiting that node without leaving any trace. |
In this paper, we investigate the approximability of two node deletion problems. Given a vertex weighted graph $G=(V,E)$ and a specified, or "distinguished" vertex $p \in V$, MDD(min) is the problem of finding a minimum weight vertex set $S \subseteq V\setminus \{p\}$ such that $p$ becomes the minimum degree v... |
The new dual-pivot Quicksort by Vladimir Yaroslavskiy - used in Oracle's Java runtime library since version 7 - features intriguing asymmetries. They make a basic variant of this algorithm use less comparisons than classic single-pivot Quicksort. |
We study the classic Max-Cut problem under multiple cardinality constraints, which we refer to as the Constrained Max-Cut problem. Given a graph $G=(V, E)$, a partition of the vertices into $c$ disjoint parts $V_1, \ldots, V_c$, and cardinality parameters $k_1, \ldots, k_c$, the goal is to select a set $S \subseteq V$... |
A common problem appearing across the field of data science is $k$-NN ($k$-nearest neighbours), particularly within the context of Geographic Information Systems. In this article, we present a novel data structure, the GeoTree, which holds a collection of geohashes (string encodings of GPS co-ordinates). |
The problem of computing all maximal induced subgraphs of a graph G that have a graph property P, also called the maximal P-subgraphs problem, is considered. This problem is studied for hereditary, connected-hereditary and rooted-hereditary graph properties. |
For positive integers $n, d$, consider the hypergrid $[n]^d$ with the coordinate-wise product partial ordering denoted by $\prec$. A function $f: [n]^d \mapsto \mathbb{N}$ is monotone if $\forall x \prec y$, $f |
In this report we study the problem of determining three-dimensional orientations for noisy projections of randomly oriented identical particles. The problem is of central importance in the tomographic reconstruction of the density map of macromolecular complexes from electron microscope images and it has been studied... |
We show that some natural problems that are XNLP-hard (which implies W[t]-hardness for all t) when parameterized by pathwidth or treewidth, become FPT when parameterized by stable gonality, a novel graph parameter based on optimal maps from graphs to trees. The problems we consider are classical flow and orientation p... |
A basic problem in metagenomics is to assign a sequenced read to the correct species in the reference collection. In typical applications in genomic epidemiology and viral metagenomics the reference collection consists of set of species with each species represented by its highly similar strains. |
We consider the Fault-Tolerant Facility Placement problem ($FTFP$), which is a generalization of the classical Uncapacitated Facility Location problem ($UFL$). In the $FTFP$ problem we have a set of clients $C$ and a set of facilities $F$. |
This work establishes the technical fundamentals of a well-tuned Customizable Contraction Hierarchies (CCH) implementation that is simple and elegant. We give a detailed overview of the state of the art of CCH, review recent advances on CCH and show how to combine them. |
In this paper, we propose some amendment on Dijkstras algorithm in order to optimize it by reducing the number of iterations. The main idea is to solve the problem where more than one node satisfies the condition of the second step in the traditional Dijkstras algorithm. |
During the last decade, the matroid secretary problem (MSP) became one of the most prominent classes of online selection problems. Partially linked to its numerous applications in mechanism design, substantial interest arose also in the study of nonlinear versions of MSP, with a focus on the submodular matroid secreta... |
Optimal Transport (OT) has established itself as a robust framework for quantifying differences between distributions, with applications that span fields such as machine learning, data science, and computer vision. This paper offers a detailed examination of the OT problem, beginning with its theoretical foundations, ... |
We show how to answer spatial multiple-set intersection queries in O(n(log w)/w + kt) expected time, where n is the total size of the t sets involved in the query, w is the number of bits in a memory word, k is the output size, and c is any fixed constant. This improves the asymptotic performance over previous solutio... |
An undirected graph is Eulerian if it is connected and all its vertices are of even degree. Similarly, a directed graph is Eulerian, if for each vertex its in-degree is equal to its out-degree. |
We consider the graph dynamical systems known as k-reversible processes. In such processes, each vertex in the graph has one of two possible states at each discrete time step. |
The Knapsack problem is one of the most fundamental NP-complete problems at the intersection of computer science, optimization, and operations research. A recent line of research worked towards understanding the complexity of pseudopolynomial-time algorithms for Knapsack parameterized by the maximum item weight $w_{\m... |
We present an algorithm for maintaining maximal matching in a graph under addition and deletion of edges. Our data structure is randomized that takes O(log |
We present a new approximation algorithm for the (metric) prize-collecting traveling salesperson problem (PCTSP). In PCTSP, opposed to the classical traveling salesperson problem (TSP), one may not include a vertex of the input graph in the returned tour at the cost of a given vertex-dependent penalty, and the objecti... |
$k$-means clustering is NP-hard in the worst case but previous work has shown efficient algorithms assuming the optimal $k$-means clusters are \emph{stable} under additive or multiplicative perturbation of data. This has two caveats. |
The hybridization number problem requires us to embed a set of binary rooted phylogenetic trees into a binary rooted phylogenetic network such that the number of nodes with indegree two is minimized. However, from a biological point of view accurately inferring the root location in a phylogenetic tree is notoriously d... |
Let $G$ be a graph where each vertex is associated with a label. A Vertex-Labeled Approximate Distance Oracle is a data structure that, given a vertex $v$ and a label $\lambda$, returns a $(1+\varepsilon)$-approximation of the distance from $v$ to the closest vertex with label $\lambda$ in $G$. |
Within the context of stochastic probing with commitment, we consider the online stochastic matching problem; that is, the one sided online bipartite matching problem where edges adjacent to an online node must be probed to determine if they exist, based on known edge probabilities. If a probed edge exists, it must be... |
Let G be an edge-weighted hypergraph on n vertices, m edges of size \le s, where the edges have real weights in an interval [1,W]. We show that if we can approximate a maximum weight matching in G within factor alpha in time T(n,m,W) then we can find a matching of weight at least (alpha-epsilon) times the maximum weig... |
Temporal networks representing a stream of timestamped edges are seemingly ubiquitous in the real-world. However, the massive size and continuous nature of these networks make them fundamentally challenging to analyze and leverage for descriptive and predictive modeling tasks. |
$k$d-trees are widely used in parallel databases to support efficient neighborhood/similarity queries. Supporting parallel updates to $k$d-trees is therefore an important operation. |
The Block Tree (BT) is a novel compact data structure designed to compress sequence collections. It obtains compression ratios close to Lempel-Ziv and supports efficient direct access to any substring. |
We study the problem of high-dimensional sparse mean estimation in the presence of an $\epsilon$-fraction of adversarial outliers. Prior work obtained sample and computationally efficient algorithms for this task for identity-covariance subgaussian distributions. |
We consider an online vector balancing question where $T$ vectors, chosen from an arbitrary distribution over $[-1,1]^n$, arrive one-by-one and must be immediately given a $\pm$ sign. The goal is to keep the discrepancy small as possible. |
The use of Hirschberg algorithm reduces the spatial cost of recovering the Longest Common Subsequence to linear space. The same technique can be applied to similar problems like Sequence Alignment. |
We present a new algorithm for the 2D Sliding Window Discrete Fourier Transform (SWDFT). Our algorithm avoids repeating calculations in overlapping windows by storing them in a tree data-structure based on the ideas of the Cooley- Tukey Fast Fourier Transform (FFT). |
Step-asynchronous successive overrelaxation updates the values contained in a single vector using the usual Gauß-Seidel-like weighted rule, but arbitrarily mixing old and new values, the only constraint being temporal coherence: you cannot use a value before it has been computed. We show that given a nonnegative real ... |
Internet search companies sell advertisement slots based on users' search queries via an auction. Advertisers have to determine how to place bids on the keywords of their interest in order to maximize their return for a given budget: this is the budget optimization problem. |
We give a deterministic, polynomial-time algorithm for approximately counting the number of {0,1}-solutions to any instance of the knapsack problem. On an instance of length n with total weight W and accuracy parameter eps, our algorithm produces a (1 + eps)-multiplicative approximation in time poly(n,log W,1/eps). |
The problem of detecting and removing redundant constraints is fundamental in optimization. We focus on the case of linear programs (LPs), given by $d$ variables with $n$ inequality constraints. |
We consider Stable Marriage with Covering Constraints (SMC): in this variant of Stable Marriage, we distinguish a subset of women as well as a subset of men, and we seek a matching with fewest number of blocking pairs that matches all of the distinguished people. We investigate how a set of natural parameters, namely ... |
In the Maximum Independent Set problem we are asked to find a set of pairwise nonadjacent vertices in a given graph with the maximum possible cardinality. In general graphs, this classical problem is known to be NP-hard and hard to approximate within a factor of $n^{1-\varepsilon}$ for any $\varepsilon > 0$. |
We present algorithms for the $(1+\epsilon)$-approximate version of the closest vector problem for certain norms. The currently fastest algorithm (Dadush and Kun 2016) for general norms has running time of $2^{O(n)} (1/\epsilon)^n$. |
We explored an uncharted part of the solution space for sorting algorithms: the role of symmetry in divide&conquer algorithms. We found/designed novel simple binary Quicksort and Mergesort algorithms operating in contiguous space which achieve improved trade-offs between worst-case CPU-efficiency, best-case adapti... |
Goemans and Rothvoss (SODA'14) gave a framework for solving problems which can be described as finding a point in int$. $cone$(P\cap\mathbb{Z}^N)\cap Q$, where $P,Q\subset\mathbb{R}^N$ are (bounded) polyhedra. |
In the Time-Windows TSP (TW-TSP) we are given requests at different locations on a network; each request is endowed with a reward and an interval of time; the goal is to find a tour that visits as much reward as possible during the corresponding time window. For the online version of this problem, where each request i... |
In this paper, we present an improved approximation algorithm for three related problems. In the Minimum Sum of Radii clustering problem (MSR), we aim to select $k$ balls in a metric space to cover all points while minimizing the sum of the radii. |
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