Datasets:

---

DiegoGF1329

/

oceanus-gainforest

like 0

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 17 new columns ({'class', 'Seq', 'GF-A4_12S_MiFish', 'GF-A3_12S_MiFish', 'phylum', 'GF-BRA_12S_MiFish', 'GF-NN_12S_MiFish', 'GF-S1_12S_MiFish', 'GF-A5_12S_MiFish', 'genus', 'species', 'domain', 'order', 'GF-A2_12S_MiFish', 'family', 'GF-MDR_12S_MiFish', 'ID'}) and 17 missing columns ({'GF-A5', 'GF-A2', 'Order', 'GF-MDR', 'Family', 'GF-A3', 'GF-BRA', 'Genus', 'GF-S1', 'Species', 'Unnamed: 0', 'Class', 'GF-A4', 'Kingdom', 'Phylum', 'rowname', 'GF-NN'}).

This happened while the csv dataset builder was generating data using

hf://datasets/DiegoGF1329/oceanus-gainforest/MiFish_OTU_table_clean.csv (at revision 2cc78535db8bb5db8608c9a5764f9013ca134e99)

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1831, in _prepare_split_single
                  writer.write_table(table)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_writer.py", line 644, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              ID: string
              GF-A2_12S_MiFish: double
              GF-A3_12S_MiFish: double
              GF-A4_12S_MiFish: double
              GF-A5_12S_MiFish: double
              GF-BRA_12S_MiFish: double
              GF-MDR_12S_MiFish: double
              GF-NN_12S_MiFish: double
              GF-S1_12S_MiFish: double
              Seq: string
              domain: string
              phylum: string
              class: string
              order: string
              family: string
              genus: string
              species: string
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 2318
              to
              {'Unnamed: 0': Value('int64'), 'rowname': Value('string'), 'GF-A2': Value('int64'), 'GF-A3': Value('int64'), 'GF-A4': Value('int64'), 'GF-A5': Value('int64'), 'GF-BRA': Value('int64'), 'GF-MDR': Value('int64'), 'GF-NN': Value('int64'), 'GF-S1': Value('int64'), 'Kingdom': Value('string'), 'Phylum': Value('string'), 'Class': Value('string'), 'Order': Value('string'), 'Family': Value('string'), 'Genus': Value('string'), 'Species': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1456, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1055, in convert_to_parquet
                  builder.download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 894, in download_and_prepare
                  self._download_and_prepare(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 970, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1702, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/builder.py", line 1833, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 17 new columns ({'class', 'Seq', 'GF-A4_12S_MiFish', 'GF-A3_12S_MiFish', 'phylum', 'GF-BRA_12S_MiFish', 'GF-NN_12S_MiFish', 'GF-S1_12S_MiFish', 'GF-A5_12S_MiFish', 'genus', 'species', 'domain', 'order', 'GF-A2_12S_MiFish', 'family', 'GF-MDR_12S_MiFish', 'ID'}) and 17 missing columns ({'GF-A5', 'GF-A2', 'Order', 'GF-MDR', 'Family', 'GF-A3', 'GF-BRA', 'Genus', 'GF-S1', 'Species', 'Unnamed: 0', 'Class', 'GF-A4', 'Kingdom', 'Phylum', 'rowname', 'GF-NN'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/DiegoGF1329/oceanus-gainforest/MiFish_OTU_table_clean.csv (at revision 2cc78535db8bb5db8608c9a5764f9013ca134e99)
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)