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script.js
///IMPORTS----------------------------------------- import screens from './components/screens.js' import PausedTimeout from './functions/pausedTimeout.js' import map1 from './maps/map1.js' import map2 from './maps/map2.js' import map3 from './maps/map3.js' import map4 from './maps/map4.js' import map5 from './maps/map...
timeouts[timeout].stopTimeout() delete timeouts[timeout] } } window.rotationPercentage = function(){ let ratio (rotationAngle%360)/360 < 0 ? ratio = Math.abs((rotationAngle%360)/360 + 1) : ratio = (rotationAngle%360)/360 if(ratio >= 0.5) ratio = (1 - ratio) ratio*=4 if(rat...
window.destroyTimeouts = function(){ for(let timeout in timeouts){
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script.js
///IMPORTS----------------------------------------- import screens from './components/screens.js' import PausedTimeout from './functions/pausedTimeout.js' import map1 from './maps/map1.js' import map2 from './maps/map2.js' import map3 from './maps/map3.js' import map4 from './maps/map4.js' import map5 from './maps/map...
//EVENT LISTENERS --------------------------------------------------- window.initListeners = function(){ document.addEventListener('keypress',e=>{ //WHEN YOU PRESS THE SPACEBAR if(e.keyCode==32){ //PAUSES GAME if(!state.paused){ screens({ title:'Paused', ...
{ myIntervals.moving = setInterval(()=>{ if(state.paused) return let ratio = (rotationAngle%360)/360 if(ratio < 0 ) ratio=Math.abs(ratio + 1) let ratio2 = (10 * (ratio*4)) if(ratio2 > 20) ratio2 -= 2*(ratio2 - 20) let ratio3 = (10 * (ratio*4)) ...
identifier_body
codon_usage.py
#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Wed Mar 13 17:34:32 2019 @author: fanlizhou Analyze codon usage of sequence from 'SP_gene_seq.txt' and 'LP_gene_seq.txt' Plot heatmap of amino acid usage and codon usage Plot codon usage in each gene for each amino acid. Genes were arranged so that the ge...
# codon usage difference between SP and LP groups AAs = [] for AA in codon_dict.keys(): AAs.append(AA) if len(codon_dict[AA]) == 2: file.write('%s: %s, %s\n' % (AA, codon_dict[AA][0], codon_dict[AA][1])) else: file.write('%s...
file = io.open('AAs_to_compare.txt', 'w') file.write('Compare following AAs\n') # AAs that have only two codon choices and show significant
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codon_usage.py
#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Wed Mar 13 17:34:32 2019 @author: fanlizhou Analyze codon usage of sequence from 'SP_gene_seq.txt' and 'LP_gene_seq.txt' Plot heatmap of amino acid usage and codon usage Plot codon usage in each gene for each amino acid. Genes were arranged so that the ge...
def get_AA(self, codon): # dict key: codon -> AA codon_map = { 'TTT':'Phe', 'TTC':'Phe', 'TTA':'Leu', 'TTG':'Leu', 'TCT':'Ser', 'TCC':'Ser', 'TCA':'Ser', 'TCG':'Ser', 'TAT':'Tyr', 'TAC':'Tyr', 'TAA':'STOP', 'TAG':'STOP', 'TGT':'Cys', 'TGC':'Cys', 'TGA':'S...
file = io.open(filename) # list of selected gene sequences, excluded genes that are non-triple all_seq = [] gene_seq = '' count_all = 0 count_non_triple = 0 for line in file: # read a gene information line if line[0]=='>': coun...
identifier_body
codon_usage.py
#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Wed Mar 13 17:34:32 2019 @author: fanlizhou Analyze codon usage of sequence from 'SP_gene_seq.txt' and 'LP_gene_seq.txt' Plot heatmap of amino acid usage and codon usage Plot codon usage in each gene for each amino acid. Genes were arranged so that the ge...
(sp_AA_dict, lp_AA_dict): # plot each AA for AA in list(sp_AA_dict.keys()): # list of codon usage information codon_data = [] # List of codon names codons = [] for codon in sp_AA_dict[AA]: # LP group data is displayed from lowest expressed ge...
plot_SP_LP
identifier_name
codon_usage.py
#!/usr/bin/env python3 # -*- coding: utf-8 -*- """ Created on Wed Mar 13 17:34:32 2019 @author: fanlizhou Analyze codon usage of sequence from 'SP_gene_seq.txt' and 'LP_gene_seq.txt' Plot heatmap of amino acid usage and codon usage Plot codon usage in each gene for each amino acid. Genes were arranged so that the ge...
# read a gene sequence line else: gene_seq += line.strip() file.close() print('%s:\n%d genes added\n%d are non-triple\n'% (filename[:2],count_all, count_non_triple)) return (...
count_all += 1 # if a gene has been read, then append it to all_seq if the # sequence is triple if gene_seq!='': if len(gene_seq)%3: count_non_triple += 1 else: ...
conditional_block
game.rs
use std::ops::Add; use super::rand::{thread_rng, Rng}; use super::direction::Direction; /// A mask with a single section of 16 bits set to 0. /// Used to extract a "horizontal slice" out of a 64 bit integer. pub static ROW_MASK: u64 = 0xFFFF; /// A `u64` mask with 4 sections each starting after the n * 16th bit. /// ...
/// /// // | F | E | D | C | | F | B | 7 | 3 | /// // | B | A | 9 | 8 | => | E | A | 6 | 2 | /// // | 7 | 6 | 5 | 4 | | D | 9 | 5 | 1 | /// // | 3 | 2 | 1 | 0 | | C | 8 | 4 | 0 | /// /// assert_eq!(Game::transpose(0xFEDC_BA98_7654_3210), 0xFB73_EA62_D951_C840); /// `...
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game.rs
use std::ops::Add; use super::rand::{thread_rng, Rng}; use super::direction::Direction; /// A mask with a single section of 16 bits set to 0. /// Used to extract a "horizontal slice" out of a 64 bit integer. pub static ROW_MASK: u64 = 0xFFFF; /// A `u64` mask with 4 sections each starting after the n * 16th bit. /// ...
{ pub board: u64 } impl Game { /// Constructs a new `tfe::Game`. /// /// `Game` stores a board internally as a `u64`. /// /// # Examples /// /// Simple example: /// /// ``` /// use tfe::Game; /// /// let mut game = Game::new(); /// # println!("{:016x}", game.board); ...
Game
identifier_name
svg.go
// +build darwin package bg import ( "encoding/xml" "fmt" "image" "io" "log" "regexp" "strconv" "strings" "text/scanner" //polyclip "github.com/akavel/polyclip-go" "github.com/paulsmith/gogeos/geos" ) type svgVert struct { X, Y float64 } type svgPolyline struct { RawPoints string `xml:"points,attr"` ...
} verts = append(verts, geos.NewCoord(p.Points[0].X, p.Points[0].Y)) if poly == nil { newPoly, err := geos.NewPolygon(verts) if err != nil { log.Fatal(fmt.Errorf("New poly creation error: %+v", err)) } poly = newPoly } else { uPoly, _ := geos.NewPolygon(verts) uPolyTy...
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svg.go
// +build darwin package bg import ( "encoding/xml" "fmt" "image" "io" "log" "regexp" "strconv" "strings" "text/scanner" //polyclip "github.com/akavel/polyclip-go" "github.com/paulsmith/gogeos/geos" ) type svgVert struct { X, Y float64 } type svgPolyline struct { RawPoints string `xml:"points,attr"` ...
func (poly *svgPolygon) generatePoints() { vals := strings.FieldsFunc(poly.PointsData, func(r rune) bool { return (r == ' ' || r == '\t' || r == ',') }) poly.Points = make([]svgVert, len(vals)/2) for idx, _ := range poly.Points { x, _ := strconv.ParseFloat(vals[idx*2], 32) y, _ := strconv.ParseFloat(vals[id...
{ wall := jsonWedPolygon{Mode: poly.Mode} wall.Verts = make([]image.Point, len(poly.Points)) for idx, pt := range poly.Points { wall.Verts[idx].X = int(pt.X) wall.Verts[idx].Y = int(pt.Y) } return wall }
identifier_body
svg.go
// +build darwin package bg import ( "encoding/xml" "fmt" "image" "io" "log" "regexp" "strconv" "strings" "text/scanner" //polyclip "github.com/akavel/polyclip-go" "github.com/paulsmith/gogeos/geos" ) type svgVert struct { X, Y float64 } type svgPolyline struct { RawPoints string `xml:"points,attr"` ...
() { if len(group.Polygons) > 0 { var poly *geos.Geometry for _, p := range group.Polygons { if len(p.Points) > 2 { verts := make([]geos.Coord, 0) for _, v := range p.Points { verts = append(verts, geos.NewCoord(v.X, v.Y)) } verts = append(verts, geos.NewCoord(p.Points[0].X, p.Points[0].Y)...
MergePolygons
identifier_name
svg.go
// +build darwin package bg import ( "encoding/xml" "fmt" "image" "io" "log" "regexp" "strconv" "strings" "text/scanner" //polyclip "github.com/akavel/polyclip-go" "github.com/paulsmith/gogeos/geos" ) type svgVert struct { X, Y float64 } type svgPolyline struct { RawPoints string `xml:"points,attr"` ...
return paths } func geosPolygonToPolygon(poly *geos.Geometry) svgPolygon { shell, err := poly.Shell() if err != nil { log.Fatal(fmt.Errorf("Shell creation error: %+v", err)) } mergedPoly := svgPolygon{} coords, err := shell.Coords() if err != nil { log.Fatal(fmt.Errorf("Coords error: %+v", err)) } for _...
{ p := &paths[idx] for pIdx, _ := range p.Polygons { poly := &p.Polygons[pIdx] for vIdx, _ := range poly.Points { v := &poly.Points[vIdx] v.X += group.translate.X v.Y += group.translate.Y } } }
conditional_block
db_feeds.go
package database import ( "database/sql" "fmt" "log" "strings" "github.com/mmcdole/gofeed" ) //GetFeedInfo -- Pulls the rss feed from the website and dumps the needed info into the database func GetFeedInfo(db *sql.DB, feedID int64) (err error) { var feedData *gofeed.Feed //Get the URl url, err := GetFeedUR...
if !strings.EqualFold(data, "") { //Need to convert the data to a gofeed object feedParser := gofeed.NewParser() feedData, err = feedParser.Parse(strings.NewReader(data)) if err != nil { return feed, fmt.Errorf("gofeed parser was unable to parse data: %s -- %s", data, err.Error()) } } var tags []stri...
{ return feed, fmt.Errorf("No data to retrieve: %s", err.Error()) }
conditional_block
db_feeds.go
package database import ( "database/sql" "fmt" "log" "strings" "github.com/mmcdole/gofeed" ) //GetFeedInfo -- Pulls the rss feed from the website and dumps the needed info into the database func GetFeedInfo(db *sql.DB, feedID int64) (err error) { var feedData *gofeed.Feed //Get the URl url, err := GetFeedUR...
(db *sql.DB, url string) bool { var id int64 var result bool row := db.QueryRow("SELECT id FROM feeds WHERE uri = $1", url) err := row.Scan(&id) if err != nil { if err != sql.ErrNoRows { log.Fatalf("Error happened when trying to check if the feed (%s) exists: %s", url, err.Error()) } } else { result = t...
FeedURLExist
identifier_name
db_feeds.go
package database import ( "database/sql" "fmt" "log" "strings" "github.com/mmcdole/gofeed" ) //GetFeedInfo -- Pulls the rss feed from the website and dumps the needed info into the database func GetFeedInfo(db *sql.DB, feedID int64) (err error) { var feedData *gofeed.Feed //Get the URl url, err := GetFeedUR...
//GetFeedAuthor -- returns the feed author func GetFeedAuthor(db *sql.DB, feedID int64) (name, email string, err error) { stmt := "SELECT authors.name, authors.email FROM feeds INNER JOIN authors ON authors.id = feeds.author_id WHERE feeds.id = $1" row := db.QueryRow(stmt, feedID) err = row.Scan(&name, &email) re...
{ var feedData *gofeed.Feed url, err := GetFeedURL(db, id) if err != nil { log.Fatal(err) } title, err := GetFeedTitle(db, id) if err != nil { log.Fatal(err) } if strings.EqualFold(title, "") { title = url } data, err := GetFeedRawData(db, id) if err != nil { return feed, fmt.Errorf("No data to re...
identifier_body
db_feeds.go
package database import ( "database/sql" "fmt" "log" "strings" "github.com/mmcdole/gofeed" ) //GetFeedInfo -- Pulls the rss feed from the website and dumps the needed info into the database func GetFeedInfo(db *sql.DB, feedID int64) (err error) { var feedData *gofeed.Feed //Get the URl url, err := GetFeedUR...
} return result, nil }
if err != nil { log.Fatal(err)
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rtmDiskUsage.js
Ext.define('rtm.src.rtmDiskUsage', { extend: 'Exem.DockForm', title : common.Util.TR('Disk Usage'), layout: 'fit', width : '100%', height: '100%', isClosedDockForm: false, listeners: { beforedestroy: function() { this.isClosedDockForm = true; this.stopRefre...
id.drawGrid(); adata = null; } });
a.rows[ix][0], // mount name adata.rows[ix][1], // file system adata.rows[ix][2], // ratio Math.trunc(+adata.rows[ix][3]), // used size Math.trunc(+adata.rows[ix][4]) // tota size ...
conditional_block
rtmDiskUsage.js
Ext.define('rtm.src.rtmDiskUsage', { extend: 'Exem.DockForm', title : common.Util.TR('Disk Usage'), layout: 'fit', width : '100%', height: '100%', isClosedDockForm: false, listeners: { beforedestroy: function() { this.isClosedDockForm = true; this.stopRefre...
});
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exif-tags.ts
import { ExifMetadataType } from "./types"; export interface TagNames { [id: number]: string; } export interface IfdTags { [ExifMetadataType.Exif]: TagNames; [ExifMetadataType.Gps]: TagNames; [ExifMetadataType.Interoperability]: TagNames; } const tags: IfdTags = { // Exif tags [ExifMetadataType.Exif] : {...
0xC716 : "PreviewApplicationName", 0xC717 : "PreviewApplicationVersion", 0xC718 : "PreviewSettingsName", 0xC719 : "PreviewSettingsDigest", 0xC71A : "PreviewColorSpace", 0xC71B : "PreviewDateTime", 0xC71C : "RawImageDigest", 0xC71D : "OriginalRawFileDigest", 0xC71E : "SubTileBlockSize...
0xC715 : "ForwardMatrix2",
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preprocessing_lpba40.py
import numpy as np import SimpleITK as sitk import matplotlib.pyplot as plt import scipy.stats as stats DEFAULT_CUTOFF = 0.01, 0.99 STANDARD_RANGE = 0, 100 def resample_image(itk_image, out_spacing=(2.0, 2.0, 2.0), is_label=False): original_spacing = itk_image.GetSpacing() original_size = itk_image.GetSize(...
import os import subprocess
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preprocessing_lpba40.py
import os import subprocess import numpy as np import SimpleITK as sitk import matplotlib.pyplot as plt import scipy.stats as stats DEFAULT_CUTOFF = 0.01, 0.99 STANDARD_RANGE = 0, 100 def resample_image(itk_image, out_spacing=(2.0, 2.0, 2.0), is_label=False): original_spacing = itk_image.GetSpacing() origin...
if not os.path.exists(str(output_path_mask)): os.makedirs(str(output_path_mask)) for i in list(range(1, 41, 1)): for j in list(range(1, 41, 1)): # ~~~~~~~~~~~~~~~ images ~~~~~~~~~~~~~~~ volpath = os.path.join(input_path, 'l{}_to_l{}.nii'.format(str(i), str(j))) ...
os.makedirs(str(output_path_hs_small))
conditional_block
preprocessing_lpba40.py
import os import subprocess import numpy as np import SimpleITK as sitk import matplotlib.pyplot as plt import scipy.stats as stats DEFAULT_CUTOFF = 0.01, 0.99 STANDARD_RANGE = 0, 100 def resample_image(itk_image, out_spacing=(2.0, 2.0, 2.0), is_label=False): original_spacing = itk_image.GetSpacing() origin...
def _get_average_mapping(percentiles_database): """Map the landmarks of the database to the chosen range. Args: percentiles_database: Percentiles database over which to perform the averaging. """ # Assuming percentiles_database.shape == (num_data_points, num_percentiles) pc1 ...
quartiles = np.arange(25, 100, 25).tolist() deciles = np.arange(10, 100, 10).tolist() all_percentiles = list(percentiles_cutoff) + quartiles + deciles percentiles = sorted(set(all_percentiles)) return np.array(percentiles)
identifier_body
preprocessing_lpba40.py
import os import subprocess import numpy as np import SimpleITK as sitk import matplotlib.pyplot as plt import scipy.stats as stats DEFAULT_CUTOFF = 0.01, 0.99 STANDARD_RANGE = 0, 100 def resample_image(itk_image, out_spacing=(2.0, 2.0, 2.0), is_label=False): original_spacing = itk_image.GetSpacing() origin...
(array, landmarks, mask=None, cutoff=None, epsilon=1e-5): cutoff_ = DEFAULT_CUTOFF if cutoff is None else cutoff mapping = landmarks data = array shape = data.shape data = data.reshape(-1).astype(np.float32) if mask is None: mask = np.ones_like(data, np.bool) mask = mask.reshape(-1...
normalize
identifier_name
git.rs
//---------------------------------------------------------------------------// // Copyright (c) 2017-2023 Ismael Gutiérrez González. All rights reserved. // // This file is part of the Rusted PackFile Manager (RPFM) project, // which can be found here: https://github.com/Frodo45127/rpfm. // // This file is licensed un...
let _ = std::fs::remove_dir_all(&self.local_path); self.update_repo() } else { // Reset the repo to his original state after the check if current_branch_name != master_refname { self.checkout_branch(&repo, &current_branch_name)?; ...
let path = self.local_path.to_string_lossy().to_string() + "\\*.*"; let _ = SystemCommand::new("attrib").arg("-r").arg(path).arg("/s").output(); }
conditional_block
git.rs
//---------------------------------------------------------------------------// // Copyright (c) 2017-2023 Ismael Gutiérrez González. All rights reserved. // // This file is part of the Rusted PackFile Manager (RPFM) project, // which can be found here: https://github.com/Frodo45127/rpfm. // // This file is licensed un...
self, contents: &str) -> Result<()> { let mut file = BufWriter::new(File::create(self.local_path.join(".gitignore"))?); file.write_all(contents.as_bytes()).map_err(From::from) } /// This function switches the branch of a `GitIntegration` to the provided refspec. pub fn checkout_branch(&self...
d_gitignore(&
identifier_name
git.rs
//---------------------------------------------------------------------------// // Copyright (c) 2017-2023 Ismael Gutiérrez González. All rights reserved. // // This file is part of the Rusted PackFile Manager (RPFM) project, // which can be found here: https://github.com/Frodo45127/rpfm. // // This file is licensed un...
Err(_) => return Ok(GitResponse::NoLocalFiles), }; // Just in case there are loose changes, stash them. // Ignore a fail on this, as it's possible we don't have contents to stash. let current_branch_name = Reference::normalize_name(repo.head()?.name().unwrap(), ReferenceForm...
let mut repo = match Repository::open(&self.local_path) { Ok(repo) => repo, // If this fails, it means we either we don´t have the repo downloaded, or we have a folder without the .git folder.
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RPMutils.py
"""Utility functions and global parameters for the model.""" import time import math import os from ca.nengo.model import SimulationMode from ca.nengo.model import Units from ca.nengo.model.impl import FunctionInput from ca.nengo.model.nef.impl import NEFEnsembleFactoryImpl from ca.nengo.math import PDFTools from ca....
#prediction of blank cell from neural module def hypothesisFile(modulename): return os.path.join(CURR_LOCATION, "data", FOLDER_NAME, modulename + "_hypothesis_" + str(JOB_ID) + ".txt") #file to record the rules used to solve a matrix def ruleFile(): return os.path.join(CURR_LOCATION, "data", FOLDER_NAME, "rule...
#rule output from neural module def resultFile(modulename): return os.path.join(CURR_LOCATION, "data", FOLDER_NAME, modulename + "_result_" + str(JOB_ID) + ".txt")
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RPMutils.py
"""Utility functions and global parameters for the model.""" import time import math import os from ca.nengo.model import SimulationMode from ca.nengo.model import Units from ca.nengo.model.impl import FunctionInput from ca.nengo.model.nef.impl import NEFEnsembleFactoryImpl from ca.nengo.math import PDFTools from ca....
(names, vectors): return [FunctionInput(names[i], [ConstantFunction(1,x) for x in vec], Units.UNK) for i,vec in enumerate(vectors)] #load vectors from a file and create corresponding output functions def loadInputVectors(filename): file = open(filename) vectors = [str2floatlist(line) for line in file] ...
makeInputVectors
identifier_name
RPMutils.py
"""Utility functions and global parameters for the model.""" import time import math import os from ca.nengo.model import SimulationMode from ca.nengo.model import Units from ca.nengo.model.impl import FunctionInput from ca.nengo.model.nef.impl import NEFEnsembleFactoryImpl from ca.nengo.math import PDFTools from ca....
#normalize vec def normalize(vec): l = length(vec) if l == 0: return vec return [x/l for x in vec] #calculate similarity between vec1 and vec2 def similarity(vec1, vec2): if len(vec1) != len(vec2): System.err.println("vectors not the same length in RPMutils.similarity(), something is ...
return math.sqrt(sum([x**2 for x in vec]))
identifier_body
RPMutils.py
"""Utility functions and global parameters for the model.""" import time import math import os from ca.nengo.model import SimulationMode from ca.nengo.model import Units from ca.nengo.model.impl import FunctionInput from ca.nengo.model.nef.impl import NEFEnsembleFactoryImpl from ca.nengo.math import PDFTools from ca....
return float(sum(vec)) / len(vec) #calculate the words in vocab that vec1 and vec2 have in common def calcSame(vec1, vec2, vocab, threshold, weight1, weight2): vec1 = [x*weight1 for x in vec1] vec2 = [x*weight2 for x in vec2] vec = vecsum(vec1,vec2) ans = [0 for i in range(len(vec))] for ...
return 0.0
conditional_block
runtime.py
# Copyright (c) 2015 - 2022, Intel Corporation # SPDX-License-Identifier: BSD-3-Clause # """Tools to support runtime implementations that use the GEOPM service """ import math import time import subprocess # nosec import sys import shlex from . import pio class TimedLoop: """Object that can be iterated over ...
"""Execute control loop defined by agent Interfaces with PlatformIO directly through the geopmdpy.pio module. Args: argv (list(str)): Arguments for application that is executed policy (object): Policy for Agent to use during the run Returns: str: Human rea...
identifier_body
runtime.py
# Copyright (c) 2015 - 2022, Intel Corporation # SPDX-License-Identifier: BSD-3-Clause # """Tools to support runtime implementations that use the GEOPM service """ import math import time import subprocess # nosec import sys import shlex from . import pio class TimedLoop: """Object that can be iterated over ...
return self._returncode def run(self, argv, policy=None, profile=None): """Execute control loop defined by agent Interfaces with PlatformIO directly through the geopmdpy.pio module. Args: argv (list(str)): Arguments for application that is executed policy ...
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runtime.py
# Copyright (c) 2015 - 2022, Intel Corporation # SPDX-License-Identifier: BSD-3-Clause # """Tools to support runtime implementations that use the GEOPM service """ import math import time import subprocess # nosec import sys import shlex from . import pio class TimedLoop: """Object that can be iterated over ...
(self): """Get the target time interval for the control loop Returns: float: Time interval in seconds """ raise NotImplementedError('Agent is an abstract base class') def get_report(self): """Summary of all data collected by calls to update() The repor...
get_period
identifier_name
runtime.py
# Copyright (c) 2015 - 2022, Intel Corporation # SPDX-License-Identifier: BSD-3-Clause # """Tools to support runtime implementations that use the GEOPM service """ import math import time import subprocess # nosec import sys import shlex from . import pio class TimedLoop: """Object that can be iterated over ...
for control_idx, new_setting in zip(self._controls_idx, new_settings): pio.adjust(control_idx, new_setting) pio.write_batch() self._agent.run_end() except: raise finally: pio.restore_control() self._returnco...
break
conditional_block
FutureWork.py
'''In this script, we will produce preliminary results for the ideas that are emitted in the disrtation entiteled "A new Bayesian framework for the interpretation of geophysical data". Those ideas are: 1) Building a prior with a fixed, large number of layers 2) Propagating the posterior model space from close-by poi...
pool.terminate()
conditional_block
FutureWork.py
'''In this script, we will produce preliminary results for the ideas that are emitted in the disrtation entiteled "A new Bayesian framework for the interpretation of geophysical data". Those ideas are: 1) Building a prior with a fixed, large number of layers 2) Propagating the posterior model space from close-by poi...
(): '''BUILDMODELSET is a function that will build the benchmark model. It does not take any arguments. ''' # Values for the benchmark model parameters: TrueModel1 = np.asarray([0.01, 0.05, 0.120, 0.280, 0.600]) # Thickness and Vs for the 3 layers (variable of the problem) TrueModel2 = np.asarray...
buildMODELSET_MASW
identifier_name
FutureWork.py
'''In this script, we will produce preliminary results for the ideas that are emitted in the disrtation entiteled "A new Bayesian framework for the interpretation of geophysical data". Those ideas are: 1) Building a prior with a fixed, large number of layers 2) Propagating the posterior model space from close-by poi...
forwardFun = funcSurf96 forward = {"Fun":forwardFun,"Axis":Periods} # Building the function for conditions (here, just checks that a sampled model is inside the prior) cond = lambda model: (np.logical_and(np.greater_equal(model,Mins),np.less_equal(model,Maxs))).all() # Initialize the model paramet...
import numpy as np from pysurf96 import surf96 Vp = np.asarray([0.300, 0.750, 1.5]) # Defined again inside the function for parallelization rho = np.asarray([1.5, 1.9, 2.2]) # Idem nLayer = 3 # Idem Frequency = np.logspace(0.1,1.5,50) # I...
identifier_body
FutureWork.py
'''In this script, we will produce preliminary results for the ideas that are emitted in the disrtation entiteled "A new Bayesian framework for the interpretation of geophysical data". Those ideas are: 1) Building a prior with a fixed, large number of layers 2) Propagating the posterior model space from close-by poi...
if ParallelComputing: pool = pp.ProcessPool(mp.cpu_count())# Create the parallel pool with at most the number of available CPU cores ppComp = [True, pool] else: ppComp = [False, None] # No parallel computing '''1) Building a prior with fixed, large number of layers''' if Ru...
seed(0)
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MultinomialAdversarialNetwork.py
#This version assumes domains = train/test set import numpy as np from ..utils import Dataset import math import random from .interface import TopicModel from .man_model.models import * from .man_model import utils from .man_model.options import opt import torch.utils.data as data_utils from tqdm import tqdm from colle...
(self, k, m, model_params=None, log_params=None): super().__init__(k,m,model_params,log_params) def prepare_data(self,d): """ Assume d is a dictionary of dataset where d[domain] = another dataset class Assume labeled domain = train set, unlabeled = test """ t...
__init__
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MultinomialAdversarialNetwork.py
#This version assumes domains = train/test set import numpy as np from ..utils import Dataset import math import random from .interface import TopicModel from .man_model.models import * from .man_model import utils from .man_model.options import opt import torch.utils.data as data_utils from tqdm import tqdm from colle...
def transform(self, d, *args, **kwargs): F_d = self.F_d[opt.domains[0]] self.F_s.eval() F_d.eval() self.C.eval() _,_,_,it = self.prepare_data(d) it = it[opt.unlabeled_domains[0]] correct = 0 total = 0 confusion = ConfusionMeter(opt.num_la...
train_loaders, train_iters, unlabeled_loaders, unlabeled_iters = self.prepare_data(d) #Training self.F_s = MlpFeatureExtractor(d['train'].X.shape[1], opt.F_hidden_sizes,opt.shared_hidden_size, opt.dropout) self.F_d = {} for domain in opt.domains: self.F_d[domain] = MlpFeature...
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MultinomialAdversarialNetwork.py
#This version assumes domains = train/test set import numpy as np from ..utils import Dataset import math import random from .interface import TopicModel from .man_model.models import * from .man_model import utils from .man_model.options import opt import torch.utils.data as data_utils from tqdm import tqdm from colle...
return train_loaders, train_iters, unlabeled_loaders, unlabeled_iters def fit(self, d, *args, **kwargs): #minibatches = create_minibatch(X, y, z, batch_size) #TODO: make this able to fit consecutively train_loaders, train_iters, unlabeled_lo...
features, target = torch.from_numpy(d[domain].X.todense().astype('float32')), torch.from_numpy(d[domain].y)#.reshape(-1,1)) uset = data_utils.TensorDataset(features,target) unlabeled_loaders[domain] = DataLoader(uset,opt.batch_size, shuffle = True) unlabeled_iters[domain] = iter(unla...
conditional_block
MultinomialAdversarialNetwork.py
#This version assumes domains = train/test set import numpy as np from ..utils import Dataset import math import random from .interface import TopicModel from .man_model.models import * from .man_model import utils from .man_model.options import opt import torch.utils.data as data_utils from tqdm import tqdm from colle...
elif opt.loss.lower() == 'l2': d_targets = utils.get_random_domain_label(opt.loss, len(d_inputs)) l_d = functional.mse_loss(d_outputs, d_targets) if opt.lambd > 0: l_d *= opt.lambd ...
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fid_pics.py
# This script creates plots for experiments from # ICLR 2018 submission by Bousquet, Gelly, Tolstikhin, Bernhard. # 1. Random samples # 2. Interpolations: # a. Between points of the test set, linearly # b. Take a random point from Pz and make a whole circle on geodesic # 3. Test reconstructions import os import sy...
def create_dir(d): if not tf.gfile.IsDirectory(d): tf.gfile.MakeDirs(d) main()
if len(pic.shape) == 4: pic = pic[0] height = pic.shape[0] width = pic.shape[1] fig = plt.figure(frameon=False, figsize=(width, height))#, dpi=1) ax = plt.Axes(fig, [0., 0., 1., 1.]) ax.set_axis_off() fig.add_axes(ax) if exp.symmetrize: pic = (pic + 1.) / 2. if exp.datase...
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fid_pics.py
# This script creates plots for experiments from # ICLR 2018 submission by Bousquet, Gelly, Tolstikhin, Bernhard. # 1. Random samples # 2. Interpolations: # a. Between points of the test set, linearly # b. Take a random point from Pz and make a whole circle on geodesic # 3. Test reconstructions import os import sy...
elif exp_name == 'celeba_vae': exp = exp9 exp_list = [exp] for exp in exp_list: output_dir = os.path.join(OUT_DIR, exp.alias) create_dir(output_dir) z_dim = exp.z_dim pz_std = exp.pz_std dataset = exp.dataset model_path = exp.trained_model_path ...
exp = exp8
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fid_pics.py
# This script creates plots for experiments from # ICLR 2018 submission by Bousquet, Gelly, Tolstikhin, Bernhard. # 1. Random samples # 2. Interpolations: # a. Between points of the test set, linearly # b. Take a random point from Pz and make a whole circle on geodesic # 3. Test reconstructions import os import sy...
self.symmetrize = None self.dataset = None self.alias = None self.test_size = None def main(): exp_name = sys.argv[-1] create_dir(OUT_DIR) exp_names = ['mnist_gan', 'mnist_mmd', 'celeba_gan', 'celeba_mmd'] cluster_mnist_mmd_path = './mount/GANs/results_mnist_pot_sota_wo...
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fid_pics.py
# This script creates plots for experiments from # ICLR 2018 submission by Bousquet, Gelly, Tolstikhin, Bernhard. # 1. Random samples # 2. Interpolations: # a. Between points of the test set, linearly # b. Take a random point from Pz and make a whole circle on geodesic # 3. Test reconstructions import os import sy...
(d): if not tf.gfile.IsDirectory(d): tf.gfile.MakeDirs(d) main()
create_dir
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server_utils.go
// // (C) Copyright 2021-2022 Intel Corporation. // // SPDX-License-Identifier: BSD-2-Clause-Patent // package server import ( "bytes" "context" "fmt" "net" "os" "path/filepath" "sort" "strconv" "strings" "sync" "github.com/dustin/go-humanize" "github.com/pkg/errors" "google.golang.org/grpc" "github.c...
engine.RUnlock() // Retrieve up-to-date hugepage info to check that we got the requested number of hugepages. mi, err := getMemInfo() if err != nil { return err } // Calculate mem_size per I/O engine (in MB) from number of hugepages required per engine. nrPagesRequired := srv.cfg.NrHugepages / len(srv.cfg.E...
{ srv.log.Debugf("skipping mem check on engine %d, no bdevs", ei) engine.RUnlock() return nil }
conditional_block
server_utils.go
// // (C) Copyright 2021-2022 Intel Corporation. // // SPDX-License-Identifier: BSD-2-Clause-Patent // package server import ( "bytes" "context" "fmt" "net" "os" "path/filepath" "sort" "strconv" "strings" "sync" "github.com/dustin/go-humanize" "github.com/pkg/errors" "google.golang.org/grpc" "github.c...
const scanMinHugePageCount = 128 func getBdevCfgsFromSrvCfg(cfg *config.Server) storage.TierConfigs { var bdevCfgs storage.TierConfigs for _, engineCfg := range cfg.Engines { bdevCfgs = append(bdevCfgs, engineCfg.Storage.Tiers.BdevConfigs()...) } return bdevCfgs } func cfgGetReplicas(cfg *config.Server, look...
{ host, port, err := net.SplitHostPort(addr) if err != nil { return nil, errors.Wrapf(err, "unable to split %q", addr) } iPort, err := strconv.Atoi(port) if err != nil { return nil, errors.Wrapf(err, "unable to convert %q to int", port) } addrs, err := lookup(host) if err != nil { return nil, errors.Wrapf...
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server_utils.go
// // (C) Copyright 2021-2022 Intel Corporation. // // SPDX-License-Identifier: BSD-2-Clause-Patent // package server import ( "bytes" "context" "fmt" "net" "os" "path/filepath" "sort" "strconv" "strings" "sync" "github.com/dustin/go-humanize" "github.com/pkg/errors" "google.golang.org/grpc" "github.c...
f, err := os.OpenFile(path, os.O_WRONLY, 0644) if err != nil { // Work around a testing oddity that seems to be related to launching // the server via SSH, with the result that the /proc file is unwritable. if os.IsPermission(err) { log.Debugf("Unable to write core dump filter to %s: %s", path, err) retur...
return filepath.Join(cfg.Engines[0].Storage.Tiers.ScmConfigs()[0].Scm.MountPoint, "control_raft") } func writeCoreDumpFilter(log logging.Logger, path string, filter uint8) error {
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server_utils.go
// // (C) Copyright 2021-2022 Intel Corporation. // // SPDX-License-Identifier: BSD-2-Clause-Patent // package server import ( "bytes" "context" "fmt" "net" "os" "path/filepath" "sort" "strconv" "strings" "sync" "github.com/dustin/go-humanize" "github.com/pkg/errors" "google.golang.org/grpc" "github.c...
(srv *server, engine *EngineInstance, allStarted *sync.WaitGroup) { // Register callback to publish engine process exit events. engine.OnInstanceExit(createPublishInstanceExitFunc(srv.pubSub.Publish, srv.hostname)) // Register callback to publish engine format requested events. engine.OnAwaitFormat(createPublishFo...
registerEngineEventCallbacks
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path_test.go
// Copyright 2020 The Kubernetes Authors. // SPDX-License-Identifier: Apache-2.0 package common import ( "bytes" "os" "path/filepath" "strings" "testing" "github.com/stretchr/testify/assert" "k8s.io/cli-runtime/pkg/genericclioptions" "sigs.k8s.io/cli-utils/pkg/testutil" ) const ( packageDir = ...
}) } } func TestFilterInputFile(t *testing.T) { tf := testutil.Setup(t) defer tf.Clean() testCases := map[string]struct { configObjects [][]byte expectedObjects [][]byte }{ "Empty config objects writes empty file": { configObjects: [][]byte{}, expectedObjects: [][]byte{}, }, "Only inventor...
{ assert.Equal(t, err.Error(), tc.errFromDemandOneDirectory) }
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path_test.go
// Copyright 2020 The Kubernetes Authors. // SPDX-License-Identifier: Apache-2.0 package common import ( "bytes" "os" "path/filepath" "strings" "testing" "github.com/stretchr/testify/assert" "k8s.io/cli-runtime/pkg/genericclioptions" "sigs.k8s.io/cli-utils/pkg/testutil" ) const ( packageDir = ...
(configs ...[]byte) []byte { r := []byte{} for i, config := range configs { if i > 0 { r = append(r, []byte(configSeparator)...) } r = append(r, config...) } return r } func TestProcessPaths(t *testing.T) { tf := setupTestFilesystem(t) defer tf.Clean() trueVal := true testCases := map[string]struct {...
buildMultiResourceConfig
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path_test.go
// Copyright 2020 The Kubernetes Authors. // SPDX-License-Identifier: Apache-2.0 package common import ( "bytes" "os" "path/filepath" "strings" "testing" "github.com/stretchr/testify/assert" "k8s.io/cli-runtime/pkg/genericclioptions" "sigs.k8s.io/cli-utils/pkg/testutil" ) const ( packageDir = ...
func TestProcessPaths(t *testing.T) { tf := setupTestFilesystem(t) defer tf.Clean() trueVal := true testCases := map[string]struct { paths []string expectedFileNameFlags genericclioptions.FileNameFlags errFromDemandOneDirectory string }{ "empty slice means reading from StdIn": { ...
{ r := []byte{} for i, config := range configs { if i > 0 { r = append(r, []byte(configSeparator)...) } r = append(r, config...) } return r }
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path_test.go
// Copyright 2020 The Kubernetes Authors. // SPDX-License-Identifier: Apache-2.0 package common import ( "bytes" "os" "path/filepath" "strings" "testing" "github.com/stretchr/testify/assert" "k8s.io/cli-runtime/pkg/genericclioptions" "sigs.k8s.io/cli-utils/pkg/testutil" ) const ( packageDir = ...
} }) } } func TestFilterInputFile(t *testing.T) { tf := testutil.Setup(t) defer tf.Clean() testCases := map[string]struct { configObjects [][]byte expectedObjects [][]byte }{ "Empty config objects writes empty file": { configObjects: [][]byte{}, expectedObjects: [][]byte{}, }, "Only inve...
assert.Equal(t, tc.expectedFileNameFlags, fileNameFlags) if err != nil && err.Error() != tc.errFromDemandOneDirectory { assert.Equal(t, err.Error(), tc.errFromDemandOneDirectory)
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pandas_gp.py
# -*- coding: utf-8 -*- """ Standard GP Algorithm (Strongly typed) Created on Sun Aug 21 10:40:14 2016 @author: jm """ import operator import math import random import cPickle import math import numpy as np import pandas as pd import matplotlib.pyplot as plt import networkx as nx from deap import algorithms from...
return sharpe, toolbox.register('evaluate', evalFitness, points=train) toolbox.register('select', tools.selTournament, tournsize=3) toolbox.register('mate', gp.cxOnePoint) toolbox.register('expr_mut', gp.genFull, min_=0, max_=3) toolbox.register('mutate', gp.mutUniform, expr=toolbox.expr_mut,...
sharpe = -99999
conditional_block
pandas_gp.py
# -*- coding: utf-8 -*- """ Standard GP Algorithm (Strongly typed) Created on Sun Aug 21 10:40:14 2016 @author: jm """ import operator import math import random import cPickle import math import numpy as np import pandas as pd import matplotlib.pyplot as plt import networkx as nx from deap import algorithms from...
if __name__ == '__main__': #random.seed(10) pop = toolbox.population(n=200) hof = tools.HallOfFame(1) stats = tools.Statistics(lambda ind: ind.fitness.values) stats.register('avg', np.mean) stats.register('min', np.min) stats.register('max', np.max) pop, log = algorithms.eaMuPlus...
nodes, edges, labels = gp.graph(individual) g = nx.Graph() g.add_nodes_from(nodes) g.add_edges_from(edges) pos = nx.drawing.nx_agraph.graphviz_layout(g, prog="dot") nx.draw_networkx_nodes(g, pos) nx.draw_networkx_edges(g, pos) nx.draw_networkx_labels(g, pos, labels) plt.show()
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pandas_gp.py
# -*- coding: utf-8 -*- """ Standard GP Algorithm (Strongly typed) Created on Sun Aug 21 10:40:14 2016 @author: jm """ import operator import math import random import cPickle import math import numpy as np import pandas as pd import matplotlib.pyplot as plt import networkx as nx from deap import algorithms from...
(left, right): return left - right def pd_multiply(left, right): return left * right def pd_divide(left, right): return left / right def pd_diff(df_in, _periods): return df_in.diff(periods=abs(_periods)) def sma(df_in, periods): return pd.rolling_mean(df_in, abs(periods)) def ewma(df_...
pd_subtract
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pandas_gp.py
# -*- coding: utf-8 -*- """ Standard GP Algorithm (Strongly typed) Created on Sun Aug 21 10:40:14 2016 @author: jm """ import operator import math import random import cPickle import math import numpy as np import pandas as pd import matplotlib.pyplot as plt import networkx as nx from deap import algorithms from...
pd_df_float, pd_df_float, pd_df_float, pd_df_float, pd_df_bool, pd_df_bool], pd_df_bool) pse...
pset = gp.PrimitiveSetTyped('MAIN', [pd_df_float,
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gke.go
/** * Copyright (c) 2019-present Future Corporation * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicab...
() (*model.Report, error) { if r.error != nil { return nil, r.error } managerList, err := compute.NewInstanceGroupManagersService(r.s).AggregatedList(r.projectID).Do() if err != nil { return nil, err } // add instance group name of cluster node pool to Set gkeNodePoolInstanceGroupSet, err := r.getGKEInstan...
Recovery
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gke.go
/** * Copyright (c) 2019-present Future Corporation
* Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable law or agreed to in writing, software * distributed ...
*
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gke.go
/** * Copyright (c) 2019-present Future Corporation * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicab...
var res []*container.Cluster for _, cluster := range l { if cluster.ResourceLabels[label] == value { res = append(res, cluster) } } return res }
{ //TODO Temp impl return l }
conditional_block
gke.go
/** * Copyright (c) 2019-present Future Corporation * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicab...
func (r *GKENodePoolCall) Resize(size int64) (*model.Report, error) { if r.error != nil { return nil, r.error } // get all instance group mangers list managerList, err := compute.NewInstanceGroupManagersService(r.s).AggregatedList(r.projectID).Do() if err != nil { return nil, err } // add instance group ...
{ if r.error != nil { return r } r.targetLabel = labelName r.targetLabelValue = value return r }
identifier_body
blob.go
package types import ( "bytes" "crypto/sha256" "encoding/binary" "fmt" ) const ( /* * Currently only to support Legacy VPN plugins, and Mac App Store * but intended to replace all the various platform code, dev code etc. bits. */ CS_SIGNER_TYPE_UNKNOWN = 0 CS_SIGNER_TYPE_LEGACYVPN = 5 CS_SIGNE...
return "Launch Constraint (parent)" case CSSLOT_LAUNCH_CONSTRAINT_RESPONSIBLE: return "Launch Constraint (responsible proc)" case CSSLOT_LIBRARY_CONSTRAINT: return "Library Constraint" case CSSLOT_ALTERNATE_CODEDIRECTORIES: return "Alternate CodeDirectories 0" case CSSLOT_ALTERNATE_CODEDIRECTORIES1: retur...
case CSSLOT_LAUNCH_CONSTRAINT_SELF: return "Launch Constraint (self)" case CSSLOT_LAUNCH_CONSTRAINT_PARENT:
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blob.go
package types import ( "bytes" "crypto/sha256" "encoding/binary" "fmt" ) const ( /* * Currently only to support Legacy VPN plugins, and Mac App Store * but intended to replace all the various platform code, dev code etc. bits. */ CS_SIGNER_TYPE_UNKNOWN = 0 CS_SIGNER_TYPE_LEGACYVPN = 5 CS_SIGNE...
if err := binary.Write(buf, o, s.Index); err != nil { return fmt.Errorf("failed to write SuperBlob indices to buffer: %v", err) } for _, blob := range s.Blobs { if err := binary.Write(buf, o, blob.BlobHeader); err != nil { return fmt.Errorf("failed to write blob header to superblob buffer: %v", err) } if...
{ return fmt.Errorf("failed to write SuperBlob header to buffer: %v", err) }
conditional_block
blob.go
package types import ( "bytes" "crypto/sha256" "encoding/binary" "fmt" ) const ( /* * Currently only to support Legacy VPN plugins, and Mac App Store * but intended to replace all the various platform code, dev code etc. bits. */ CS_SIGNER_TYPE_UNKNOWN = 0 CS_SIGNER_TYPE_LEGACYVPN = 5 CS_SIGNE...
func (b Blob) Bytes() ([]byte, error) { buf := new(bytes.Buffer) if err := binary.Write(buf, binary.BigEndian, b.BlobHeader); err != nil { return nil, fmt.Errorf("failed to write blob header to buffer: %v", err) } if err := binary.Write(buf, binary.BigEndian, b.Data); err != nil { return nil, fmt.Errorf("fail...
{ h := sha256.New() if err := binary.Write(h, binary.BigEndian, b.BlobHeader); err != nil { return nil, fmt.Errorf("failed to hash blob header: %v", err) } if err := binary.Write(h, binary.BigEndian, b.Data); err != nil { return nil, fmt.Errorf("failed to hash blob header: %v", err) } return h.Sum(nil), nil }
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blob.go
package types import ( "bytes" "crypto/sha256" "encoding/binary" "fmt" ) const ( /* * Currently only to support Legacy VPN plugins, and Mac App Store * but intended to replace all the various platform code, dev code etc. bits. */ CS_SIGNER_TYPE_UNKNOWN = 0 CS_SIGNER_TYPE_LEGACYVPN = 5 CS_SIGNE...
() ([]byte, error) { h := sha256.New() if err := binary.Write(h, binary.BigEndian, b.BlobHeader); err != nil { return nil, fmt.Errorf("failed to hash blob header: %v", err) } if err := binary.Write(h, binary.BigEndian, b.Data); err != nil { return nil, fmt.Errorf("failed to hash blob header: %v", err) } retur...
Sha256Hash
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storage.go
package callosum import ( "database/sql" "fmt" "log" "sync" _ "github.com/mattn/go-sqlite3" //sqllite DB driver import ) //UserRow holds the data obtained from fetching a row from the `users` table. type UserRow struct { ID int64 ScreenName string Description string LastLookedAt ...
} //StoreScreenName inserts the given screenName into the `screenames` table func (s *Storage) StoreScreenName(screenName string) { _, err := s.db.Exec("INSERT OR IGNORE INTO screennames (screen_name) VALUES (?)", screenName) if err != nil { log.Fatal(err) } } //StoreUser inserts the Twitter user details into t...
{ log.Fatalf("%q: %s\n", err, sqlStmt) return }
conditional_block
storage.go
package callosum import ( "database/sql" "fmt" "log" "sync" _ "github.com/mattn/go-sqlite3" //sqllite DB driver import ) //UserRow holds the data obtained from fetching a row from the `users` table. type UserRow struct { ID int64 ScreenName string Description string LastLookedAt ...
} mutex.Unlock() return s } func (s *Storage) setupTables() { tableName := "users" s.makeTable(tableName, fmt.Sprintf(` CREATE TABLE IF NOT EXISTS %s ( user_id INTEGER PRIMARY KEY, screen_name TEXT CONSTRAINT uniquescreenname UNIQUE, description TEXT CONSTRAINT defaultdesc DEFAULT "", ...
s.setupTables()
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storage.go
package callosum import ( "database/sql" "fmt" "log" "sync" _ "github.com/mattn/go-sqlite3" //sqllite DB driver import ) //UserRow holds the data obtained from fetching a row from the `users` table. type UserRow struct { ID int64 ScreenName string Description string LastLookedAt ...
(userID int64, lastLookedAt, latestTweetID int64) { chQueryArgs <- &queryArgs{"UPDATE users SET last_looked_at=?, latest_tweet_id=? where user_id=?", []interface{}{lastLookedAt, latestTweetID, userID}} } //MarkUserLatestFriendsCollected sets the `latest_following_id` to the latest id of the users given userID //is fo...
MarkUserLatestTweetsCollected
identifier_name
storage.go
package callosum import ( "database/sql" "fmt" "log" "sync" _ "github.com/mattn/go-sqlite3" //sqllite DB driver import ) //UserRow holds the data obtained from fetching a row from the `users` table. type UserRow struct { ID int64 ScreenName string Description string LastLookedAt ...
//StoreUser inserts the Twitter user details into the `users` table. func (s *Storage) StoreUser(userID int64, screenName, description string, protected bool, blob []byte) { chQueryArgs <- &queryArgs{"INSERT OR IGNORE INTO users (user_id, screen_name, description, protected, blob) VALUES (?, ?, ?, ?, ?)", []interf...
{ _, err := s.db.Exec("INSERT OR IGNORE INTO screennames (screen_name) VALUES (?)", screenName) if err != nil { log.Fatal(err) } }
identifier_body
equilibrium_computation.py
""" @version $Id: equilibrium_computation.py 2017-02-10 16:08 denis $ Module to compute the resting equilibrium point of a Virtual Epileptic Patient module """ import numpy from scipy.optimize import root from sympy import symbols, exp, solve, lambdify from tvb_epilepsy.base.constants import X1_DEF, X1_EQ_CR_DEF, X0_...
jac_e_x1o = -numpy.dot(i_x0, K[:,iE]) * w[iE][:,ix0] jac_x0_x0e = numpy.zeros((no_x0,no_e),dtype = type) jac_x0_x1o = numpy.diag(4 + 3 * x[ix0] ** 2 + 4 * x[ix0] + K[ix0] * numpy.sum(w[ix0][:,ix0], axis=1)) \ - numpy.dot(i_x0, K[:, ix0]) * w[ix0][:, ix0] jac = numpy.zeros((n_regions,n_...
jac_e_x0e = numpy.diag(- 4 * rx0[iE])
random_line_split
equilibrium_computation.py
""" @version $Id: equilibrium_computation.py 2017-02-10 16:08 denis $ Module to compute the resting equilibrium point of a Virtual Epileptic Patient module """ import numpy from scipy.optimize import root from sympy import symbols, exp, solve, lambdify from tvb_epilepsy.base.constants import X1_DEF, X1_EQ_CR_DEF, X0_...
return x2eq, y2eq # def pop2eq_calc(n_regions,x1eq,zeq,Iext2): # shape = x1eq.shape # type = x1eq.dtype # #g_eq = 0.1*x1eq (1) # #y2eq = 6*(x2eq+0.25)*x1eq (2) # #-x2eq**3 + x2eq -y2eq+2*g_eq-0.3*(zeq-3.5)+Iext2 =0=> (1),(2) # #-x2eq**3 + x2eq -6*(x2eq+0.25)*x1eq+2*0.1*x1eq-0.3*(zeq-3.5)+Iext2 ...
x2eq[0 ,i] = numpy.min(numpy.real(numpy.roots([-1.0, 0.0, 1.0, p0[0 ,i]])))
conditional_block
equilibrium_computation.py
""" @version $Id: equilibrium_computation.py 2017-02-10 16:08 denis $ Module to compute the resting equilibrium point of a Virtual Epileptic Patient module """ import numpy from scipy.optimize import root from sympy import symbols, exp, solve, lambdify from tvb_epilepsy.base.constants import X1_DEF, X1_EQ_CR_DEF, X0_...
(X1_DEF, X1_EQ_CR_DEF, n_regions): #The default initial condition for x1 equilibrium search return numpy.repeat(numpy.array((X1_EQ_CR_DEF + X1_DEF) / 2.0), n_regions) def x1_lin_def(X1_DEF, X1_EQ_CR_DEF, n_regions): # The point of the linear Taylor expansion return numpy.repeat(numpy.array((X1_EQ_CR_D...
x1eq_def
identifier_name
equilibrium_computation.py
""" @version $Id: equilibrium_computation.py 2017-02-10 16:08 denis $ Module to compute the resting equilibrium point of a Virtual Epileptic Patient module """ import numpy from scipy.optimize import root from sympy import symbols, exp, solve, lambdify from tvb_epilepsy.base.constants import X1_DEF, X1_EQ_CR_DEF, X0_...
def zeq_6d_calc(x1eq, y0, Iext1): return fx1_6d_calc(x1eq, z=0, y0=y0, Iext1=Iext1) def y1eq_calc(x1eq, d=5.0): return 1 - d * x1eq ** 2 def pop2eq_calc(x1eq, zeq, Iext2): shape = x1eq.shape type = x1eq.dtype # g_eq = 0.1*x1eq (1) # y2eq = 0 (2) y2eq = numpy.zeros(shape, dtype=type) ...
return fx1_2d_calc(x1eq, z=0, y0=y0, Iext1=Iext1)
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hverse-encounter-helper.user.js
/* eslint-disable max-len */ // ==UserScript== // @name HentaiVerse Encounter Unclicker // @namespace PrincessRTFM // @version 3.2.1 // @description Massively improves the useability/interface of the HentaiVerse random encounters system; tracks the time since the last event (and what it was), automatic...
news.first().prepend(eventPane); } else if (gallery.length) { gallery.after(eventPane); } } if (!eventPane .find('a[href]') .filter((i, e) => (e.href || '').toLowerCase().includes('hentaiverse.org')) .length ) { eventPane.append('<p><a href="https://hentaiverse.org/">Enter the HentaiVerse</a></p>...
const gallery = $('#nb'); if (news.length) {
random_line_split
hverse-encounter-helper.user.js
/* eslint-disable max-len */ // ==UserScript== // @name HentaiVerse Encounter Unclicker // @namespace PrincessRTFM // @version 3.2.1 // @description Massively improves the useability/interface of the HentaiVerse random encounters system; tracks the time since the last event (and what it was), automatic...
this); for (let i = 0; i < 5; i++) { s += bits.splice(Math.floor(Math.random() * bits.length), 1); } return s; }, }); // SCRIPT CORE BEGINS \\ ((window, $, moment) => { // eslint-disable-next-line no-extend-native Set.prototype.addAll = Set.prototype.addAll || function addAll(iterable) { Array.from(iter...
from(
identifier_name
hverse-encounter-helper.user.js
/* eslint-disable max-len */ // ==UserScript== // @name HentaiVerse Encounter Unclicker // @namespace PrincessRTFM // @version 3.2.1 // @description Massively improves the useability/interface of the HentaiVerse random encounters system; tracks the time since the last event (and what it was), automatic...
LAST_EVENT_TIMESTAMP_KEY, 0) || Date.now().valueOf()); const expandTemplate = (tmpl, durationObj, eventKey) => { const durationStr = durationObj.humanize(); return tmpl .replace(/\$PERIOD\$/gu, durationStr) .replace( /\$PERIOD.SHORT\$/gu, durationStr .replace(/^a\s+few\s+/ui, "0 ") .replace...
nt.js library').css('border-bottom', '2px dotted red'); return; } const lastEvent = () => moment(GM_getValue(
conditional_block
hverse-encounter-helper.user.js
/* eslint-disable max-len */ // ==UserScript== // @name HentaiVerse Encounter Unclicker // @namespace PrincessRTFM // @version 3.2.1 // @description Massively improves the useability/interface of the HentaiVerse random encounters system; tracks the time since the last event (and what it was), automatic...
moment) => { // eslint-disable-next-line no-extend-native Set.prototype.addAll = Set.prototype.addAll || function addAll(iterable) { Array.from(iterable).forEach(e => this.add(e)); }; const genid = () => ([1e7] + 1e3 + 4e3 + 8e3 + 1e11) .repeat(2) .replace( /[018]/gu, c => (c ^ crypto.getRandomValues(n...
s); for (let i = 0; i < 5; i++) { s += bits.splice(Math.floor(Math.random() * bits.length), 1); } return s; }, }); // SCRIPT CORE BEGINS \\ ((window, $,
identifier_body
experiment_types.go
/* Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at http://www.apache.org/licenses/LICENSE-2.0 Unless required by applicable law or agreed to in writing, software distributed under the License is ...
// Noted that at most one reward metric is allowed // If more than one reward criterion is included, the first would be used while others would be omitted // +optional Criteria []Criterion `json:"criteria,omitempty"` // TrafficControl provides instructions on traffic management for an experiment // +optional Tr...
// Criteria contains a list of Criterion for assessing the target service
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Blockchain.go
package BLC import ( "bytes" "crypto/ecdsa" "encoding/hex" "fmt" "github.com/boltdb/bolt" "log" "math/big" "os" "strconv" ) type Blockchain struct { Tip []byte // BlockHash of top Block DB *bolt.DB // A pointer to the database } func CreateBlockchainWithGenesisBlock(address string, nodeID string)
// Convert command variables to Transaction Objects func (blockchain *Blockchain) hanldeTransations(from []string, to []string, amount []string, nodeId string) []*Transaction { var txs []*Transaction utxoSet := &UTXOSet{blockchain} for i := 0; i < len(from); i++ { amountInt, _ := strconv.Atoi(amount[i]) tx :=...
{ DBName := fmt.Sprintf(DBName, nodeID) if DBExists(DBName) { fmt.Println("Genesis block already exist!") os.Exit(1) } fmt.Println("Creating genesis block....") db, err := bolt.Open(DBName, 0600, nil) if err != nil { log.Panic(err) } defer db.Close() err = db.Update(func(tx *bolt.Tx) error { b, err...
identifier_body
Blockchain.go
package BLC import ( "bytes" "crypto/ecdsa" "encoding/hex" "fmt" "github.com/boltdb/bolt" "log" "math/big" "os" "strconv" ) type Blockchain struct { Tip []byte // BlockHash of top Block DB *bolt.DB // A pointer to the database } func CreateBlockchainWithGenesisBlock(address string, nodeID string) { DB...
fmt.Println("没找到对应交易") } else { //fmt.Println("preTxs___________________________________") //fmt.Println(prevTxs) } //验证 return tx.VerifyTransaction(prevTxs) //return true } func (bc *Blockchain) GetAllUTXOs() map[string]*UTXOArray { iterator := bc.Iterator() utxoMap := make(map[string]*UTXOArray) //已花费...
if len(prevTxs) == 0 {
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Blockchain.go
package BLC import ( "bytes" "crypto/ecdsa" "encoding/hex" "fmt" "github.com/boltdb/bolt" "log" "math/big" "os" "strconv" ) type Blockchain struct { Tip []byte // BlockHash of top Block DB *bolt.DB // A pointer to the database } func CreateBlockchainWithGenesisBlock(address string, nodeID string) { DB...
ame := fmt.Sprintf(DBName, nodeID) if DBExists(DBName) { db, err := bolt.Open(DBName, 0600, nil) if err != nil { log.Panic(err) } defer db.Close() var blockchain *Blockchain err = db.View(func(tx *bolt.Tx) error { b := tx.Bucket([]byte(BlockBucketName)) if b != nil { hash := b.Get([]byte("l"))...
*Blockchain { DBN
conditional_block
Blockchain.go
package BLC import ( "bytes" "crypto/ecdsa" "encoding/hex" "fmt" "github.com/boltdb/bolt" "log" "math/big" "os" "strconv" ) type Blockchain struct { Tip []byte // BlockHash of top Block DB *bolt.DB // A pointer to the database } func CreateBlockchainWithGenesisBlock(address string, nodeID string) { DB...
).Cmp(bigInt) == 0 { break } } return blocksHashes } func (bc *Blockchain) GetBlockByHash(hash []byte) *Block { var block Block DBName := fmt.Sprintf(DBName, os.Getenv("NODE_ID")) db, err := bolt.Open(DBName, 0600, nil) if err != nil { log.Panic(err) } defer db.Close() err = db.View(func(tx *bolt.Tx) ...
.NewInt(0
identifier_name
channel.pb.go
// Copyright (c) 2018 NEC Laboratories Europe GmbH. // // Authors: Wenting Li <wenting.li@neclab.eu> // Sergey Fedorov <sergey.fedorov@neclab.eu> // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of...
}.Build() File_channel_proto = out.File file_channel_proto_rawDesc = nil file_channel_proto_goTypes = nil file_channel_proto_depIdxs = nil } // Reference imports to suppress errors if they are not otherwise used. var _ context.Context var _ grpc.ClientConnInterface // This is a compile-time assertion to ensure t...
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channel.pb.go
// Copyright (c) 2018 NEC Laboratories Europe GmbH. // // Authors: Wenting Li <wenting.li@neclab.eu> // Sergey Fedorov <sergey.fedorov@neclab.eu> // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of...
type Channel_PeerChatServer interface { Send(*Message) error Recv() (*Message, error) grpc.ServerStream } type channelPeerChatServer struct { grpc.ServerStream } func (x *channelPeerChatServer) Send(m *Message) error { return x.ServerStream.SendMsg(m) } func (x *channelPeerChatServer) Recv() (*Message, error)...
{ return srv.(ChannelServer).PeerChat(&channelPeerChatServer{stream}) }
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channel.pb.go
// Copyright (c) 2018 NEC Laboratories Europe GmbH. // // Authors: Wenting Li <wenting.li@neclab.eu> // Sergey Fedorov <sergey.fedorov@neclab.eu> // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of...
type x struct{} out := protoimpl.TypeBuilder{ File: protoimpl.DescBuilder{ GoPackagePath: reflect.TypeOf(x{}).PkgPath(), RawDescriptor: file_channel_proto_rawDesc, NumEnums: 0, NumMessages: 1, NumExtensions: 0, NumServices: 1, }, GoTypes: file_channel_proto_goTypes, Depen...
{ file_channel_proto_msgTypes[0].Exporter = func(v interface{}, i int) interface{} { switch v := v.(*Message); i { case 0: return &v.state case 1: return &v.sizeCache case 2: return &v.unknownFields default: return nil } } }
conditional_block
channel.pb.go
// Copyright (c) 2018 NEC Laboratories Europe GmbH. // // Authors: Wenting Li <wenting.li@neclab.eu> // Sergey Fedorov <sergey.fedorov@neclab.eu> // // Licensed under the Apache License, Version 2.0 (the "License"); // you may not use this file except in compliance with the License. // You may obtain a copy of...
() ([]byte, []int) { return file_channel_proto_rawDescGZIP(), []int{0} } func (x *Message) GetPayload() []byte { if x != nil { return x.Payload } return nil } var File_channel_proto protoreflect.FileDescriptor var file_channel_proto_rawDesc = []byte{ 0x0a, 0x0d, 0x63, 0x68, 0x61, 0x6e, 0x6e, 0x65, 0x6c, 0x2e,...
Descriptor
identifier_name
ag.py
#!/bin/python3 import os import re import sys import json from pprint import pprint from shorthand import * from amyhead import * #charset_namespace="[A-Za-z0-9_$]+" # in 'shorthand' #parser_goal=re.compile('[ \t]*([0-9]+)[ \t](.+)') token_item=r'([\n]|^)([ \t]*\~?[0-9]+|[ \t]*\~?include|[ \t]*\~?gonear)...
return rtv ''' learn file a learn file records ordered goals of the successful paths probably ''' def loadNextGoalFile(self,filename=None): # return True on error # else False if isNone(filename): filename=self.filename if isNone(filename) or os.path.isfile(filename)==False: return True ...
x.size() for k,v in tmp.items(): rtv[k]+=v
conditional_block
ag.py
#!/bin/python3 import os import re import sys import json from pprint import pprint from shorthand import * from amyhead import * #charset_namespace="[A-Za-z0-9_$]+" # in 'shorthand' #parser_goal=re.compile('[ \t]*([0-9]+)[ \t](.+)') token_item=r'([\n]|^)([ \t]*\~?[0-9]+|[ \t]*\~?include|[ \t]*\~?gonear)...
ef fromStr(self,s,cd='./',extView=None): s=s.replace('\r','') ''' \r\n , \n\r , \n -> \n format: see self.fromTxt ''' # unset filename self.filename=None self.extendedView=extView #old=self.sets p=self.__class__.parser_set s=re.sub("(\n\r|\n|\r\n)[ \t]*(\n\r|\n|\r\n)","\n\n",s) def...
rn [ k for k in self.sets if self.getSucc(k)=='-' ] d
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ag.py
#!/bin/python3 import os import re import sys import json from pprint import pprint from shorthand import * from amyhead import * #charset_namespace="[A-Za-z0-9_$]+" # in 'shorthand' #parser_goal=re.compile('[ \t]*([0-9]+)[ \t](.+)') token_item=r'([\n]|^)([ \t]*\~?[0-9]+|[ \t]*\~?include|[ \t]*\~?gonear)...
self.constraints=[] # [ (int(label),item,negate?) ... ] self.maxLabel=-1 self.including=False self.arrangeNeeded=False self.extendedView=None # inherit from Goaltree def __eq__(self,rhs): self.arrange() if isinstance(rhs,self.__class__): return self.constraints==rhs.constraints else: ra...
random_line_split
ag.py
#!/bin/python3 import os import re import sys import json from pprint import pprint from shorthand import * from amyhead import * #charset_namespace="[A-Za-z0-9_$]+" # in 'shorthand' #parser_goal=re.compile('[ \t]*([0-9]+)[ \t](.+)') token_item=r'([\n]|^)([ \t]*\~?[0-9]+|[ \t]*\~?include|[ \t]*\~?gonear)...
f,k): return self.sets[k][2] def getSuccsStr(self,k): return self.sets[k][3][0] def getPrecs(self,k): return self.sets[k][4] def getOpts(self,k): rtv=dict(self.sets[k][5]) for i in rtv: rtv[i]=rtv[i][1] return rtv def getFinals(self): return [ k for k in self.sets if self.getSucc(k)=='-' ] ...
uccs(sel
identifier_name
daemon.go
/* * Copyright 2020 The Dragonfly Authors * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable la...
if opt.Security.Cert == "" || opt.Security.Key == "" { return nil, -1, errors.New("empty cert or key for tls") } // Create the TLS ClientOption with the CA pool and enable Client certificate validation if opt.Security.TLSConfig == nil { opt.Security.TLSConfig = &tls.Config{} } tlsConfig := opt.Security.TLS...
{ return ln, port, err }
conditional_block
daemon.go
/* * Copyright 2020 The Dragonfly Authors * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable la...
func (cd *clientDaemon) ExportPeerHost() *scheduler.PeerHost { return cd.schedPeerHost }
{ return cd.PeerTaskManager }
identifier_body
daemon.go
/* * Copyright 2020 The Dragonfly Authors * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable la...
schedPeerHost: host, Option: *opt, RPCManager: rpcManager, PeerTaskManager: peerTaskManager, PieceManager: pieceManager, ProxyManager: proxyManager, UploadManager: uploadManager, StorageManager: storageManager, GCManager: gc.NewManager(opt.GCInterval.Duration), }, nil } f...
once: &sync.Once{}, done: make(chan bool),
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daemon.go
/* * Copyright 2020 The Dragonfly Authors * * Licensed under the Apache License, Version 2.0 (the "License"); * you may not use this file except in compliance with the License. * You may obtain a copy of the License at * * http://www.apache.org/licenses/LICENSE-2.0 * * Unless required by applicable la...
(opt config.SecurityOption) (credentials.TransportCredentials, error) { // Load certificate of the CA who signed client's certificate pemClientCA, err := ioutil.ReadFile(opt.CACert) if err != nil { return nil, err } certPool := x509.NewCertPool() if !certPool.AppendCertsFromPEM(pemClientCA) { return nil, fmt...
loadGPRCTLSCredentials
identifier_name
main.rs
extern crate bible_reference_rs; extern crate chrono; extern crate futures; extern crate hyper; extern crate postgres; extern crate serde; extern crate url; #[macro_use] extern crate serde_json; mod models; use bible_reference_rs::*; use futures::future::{Future, FutureResult}; use hyper::service::{NewService, Service...
struct SearchService; impl NewService for SearchService { type ReqBody = Body; type ResBody = Body; type Error = ServiceError; type Service = SearchService; type Future = Box<Future<Item = Self::Service, Error = Self::Error> + Send>; type InitError = ServiceError; fn new_service(&self) -...
{ futures::future::ok( Response::builder() .header(header::CONTENT_TYPE, "application/json") .header(header::ACCESS_CONTROL_ALLOW_ORIGIN, "*") .header(header::ACCESS_CONTROL_ALLOW_METHODS, "GET") .header(header::ACCESS_CONTROL_ALLOW_HEADERS, "Content-Type") ...
identifier_body
main.rs
extern crate bible_reference_rs; extern crate chrono; extern crate futures; extern crate hyper; extern crate postgres; extern crate serde; extern crate url; #[macro_use] extern crate serde_json; mod models; use bible_reference_rs::*; use futures::future::{Future, FutureResult}; use hyper::service::{NewService, Service...
(query: SearchPaginate, db: &Connection) -> FutureResult<Body, ServiceError> { let text = &query.text; let results = fetch_search_results(text.to_string(), query.page, db); futures::future::ok(Body::from( json!({ "meta": { "text": text, "page": query.page, "total": results.1 }, ...
search_text
identifier_name
main.rs
extern crate bible_reference_rs; extern crate chrono; extern crate futures; extern crate hyper; extern crate postgres; extern crate serde; extern crate url; #[macro_use] extern crate serde_json; mod models; use bible_reference_rs::*; use futures::future::{Future, FutureResult}; use hyper::service::{NewService, Service...
.unwrap(), ) } struct SearchService; impl NewService for SearchService { type ReqBody = Body; type ResBody = Body; type Error = ServiceError; type Service = SearchService; type Future = Box<Future<Item = Self::Service, Error = Self::Error> + Send>; type InitError = ServiceError...
.header(header::ACCESS_CONTROL_ALLOW_METHODS, "GET") .header(header::ACCESS_CONTROL_ALLOW_HEADERS, "Content-Type") .body(body)
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domain_randomization.py
# Copyright (c) 2020, Fabio Muratore, Honda Research Institute Europe GmbH, and # Technical University of Darmstadt. # All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # 1. Redistributions of source ...
def randomizer(self) -> DomainRandomizer: # Forward to the wrapped DomainRandWrapper return self._wrapped_env.randomizer @randomizer.setter def randomizer(self, dr: DomainRandomizer): # Forward to the wrapped DomainRandWrapper self._wrapped_env.randomizer = dr def adapt...
self.dp_mapping = dp_mapping @property
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domain_randomization.py
# Copyright (c) 2020, Fabio Muratore, Honda Research Institute Europe GmbH, and # Technical University of Darmstadt. # All rights reserved. # # Redistribution and use in source and binary forms, with or without # modification, are permitted provided that the following conditions are met: # 1. Redistributions of source ...
return env
env = remove_env(env, DomainRandWrapper)
conditional_block