| | --- |
| | title: MR-RATE-atlas Dataset |
| | license: cc-by-nc-sa-4.0 |
| | task_categories: |
| | - image-to-text |
| | - text-to-image |
| | - image-classification |
| | - question-answering |
| | - visual-question-answering |
| | - zero-shot-classification |
| | language: |
| | - en |
| | tags: |
| | - brain-mri |
| | - radiology |
| | - science |
| | - huggingscience |
| | - 3d-medical-imaging |
| | - medical |
| | - mr-rate |
| | - multimodal |
| | - vision-language |
| | - healthcare |
| | - diagnostic-imaging |
| | - computer-vision |
| | - foundation-model |
| | size_categories: |
| | - 10K<n<100K |
| | pretty_name: "MR-RATE-atlas: Atlas-Registered Brain MRI Volumes" |
| | extra_gated_prompt: > |
| | ## Terms and Conditions for Using the MR-RATE Dataset |
| | **1. Acceptance of Terms** |
| | Accessing and using the MR-RATE dataset implies your agreement to these terms |
| | and conditions. If you disagree with any part, please refrain from using the |
| | dataset. |
| | |
| |
|
| | **2. Permitted Use** |
| |
|
| | - The dataset is intended solely for academic, research, and educational |
| | purposes. |
| |
|
| | - Any commercial exploitation of the dataset without prior permission is |
| | strictly forbidden. |
| |
|
| | - You must adhere to all relevant laws, regulations, and research ethics, |
| | including data privacy and protection standards. |
| |
|
| |
|
| | **3. Data Protection and Privacy** |
| |
|
| | - Acknowledge the presence of sensitive information within the dataset and |
| | commit to maintaining data confidentiality. |
| |
|
| | - Direct attempts to re-identify individuals from the dataset are prohibited. |
| |
|
| | - Ensure compliance with data protection laws such as GDPR and HIPAA. |
| |
|
| |
|
| | **4. Attribution** |
| |
|
| | - Cite the dataset and acknowledge the providers in any publications resulting |
| | from its use. |
| |
|
| | - Claims of ownership or exclusive rights over the dataset or derivatives are |
| | not permitted. |
| |
|
| |
|
| | **5. Redistribution** |
| |
|
| | - Redistribution of the dataset or any portion thereof is not allowed. |
| |
|
| | - Sharing derived data must respect the privacy and confidentiality terms set |
| | forth. |
| |
|
| |
|
| | **6. Disclaimer** |
| |
|
| | The dataset is provided "as is" without warranty of any kind, either expressed |
| | or implied, including but not limited to the accuracy or completeness of the |
| | data. |
| |
|
| |
|
| | **7. Limitation of Liability** |
| |
|
| | Under no circumstances will the dataset providers be liable for any claims or |
| | damages resulting from your use of the dataset. |
| |
|
| |
|
| | **8. Access Revocation** |
| |
|
| | Violation of these terms may result in the termination of your access to the |
| | dataset. |
| |
|
| |
|
| | **9. Amendments** |
| |
|
| | The terms and conditions may be updated at any time; continued use of the |
| | dataset signifies acceptance of the new terms. |
| |
|
| |
|
| | **10. Governing Law** |
| |
|
| | These terms are governed by the laws of the location of the dataset providers, |
| | excluding conflict of law rules. |
| |
|
| |
|
| | **Consent:** |
| |
|
| | Accessing and using the MR-RATE dataset signifies your acknowledgment and |
| | agreement to these terms and conditions. |
| | extra_gated_fields: |
| | Name: text |
| | Institution: text |
| | Email: text |
| | I have read and agree with Terms and Conditions for using the MR-RATE dataset: checkbox |
| | --- |
| | <p align="center"> |
| | <span style="font-size: 24px; font-weight: 700;"> |
| | MR-RATE: A Vision-Language Foundation Model and Dataset for Magnetic Resonance Imaging |
| | </span> |
| | </p> |
| | <p align="center"> |
| | <strong>Paper</strong> (Coming soon) | |
| | <a href="https://github.com/forithmus/MR-RATE">GitHub</a> | |
| | <a href="https://huggingface.co/datasets/Forithmus/MR-RATE#dataset-repositories">Dataset Repositories</a> | |
| | <strong>Model Weights</strong> (Coming soon) |
| | </p> |
| | |
| | This is the **MR-RATE-atlas** repository, part of the **MR-RATE** dataset release. It contains atlas-registered brain MRI volumes in which all imaging sequences within each study have been spatially normalized to a standard atlas-space. For full dataset details, native-space MRI volumes, radiology reports, metadata, and data splits, please refer to the [MR-RATE](https://huggingface.co/datasets/Forithmus/MR-RATE) repository. |
| |
|
| | # Atlas-Registered Brain MRI Volumes |
| |
|
| | Within each study, the T1-weighted brain MRI volume serving as the center modality is rigidly registered to the [MNI152 (ICBM 2009c Nonlinear Symmetric)](https://nist.mni.mcgill.ca/icbm-152-nonlinear-atlases-2009/) atlas using [ANTs](https://github.com/antsx/ants). The native-space moving modality brain MRI volumes, and the brain masks and defacing masks of center modalities from [MR-RATE](https://huggingface.co/datasets/Forithmus/MR-RATE) repository are then transformed to atlas-space by composing the native-to-center and center-to-atlas registration transforms, bringing all sequences of a given study into a standardized coordinate space that enables group-level analyses and cross-patient comparisons. |
| |
|
| | This repository provides: |
| | - **Atlas-registered center modalities** (in NIfTI format) — All T1-weighted center modality brain MRI volumes, and corresponding brain masks and defacing masks warped to atlas-space |
| | - **Atlas-registered moving modalities** (in NIfTI format) — All moving modality brain MRI volumes transformed to atlas-space |
| | - **Registration transforms** (in .mat format) — The ANTs registration transform files mapping each center modality to the atlas, enabling users to apply them in their custom workflows |
| |
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| | Study folders are zipped to comply with Hugging Face's per-repository file count limits. |
| |
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| | A detailed guide explaining the dataset organization, the preprocessing steps used, and download instructions is coming soon. |
| |
|
| | # Citing Us |
| | When using this dataset, please consider citing the following related papers: |
| |
|
| | ``` |
| | Coming soon |
| | ``` |
| |
|
| | # Ethical Approval |
| | Information for researchers who require ethical approval documentation for grant applications is coming soon. |
| |
|
| | # License |
| | We are committed to fostering innovation and collaboration in the research community. To this end, all elements of the MR-RATE dataset are released under a [Creative Commons Attribution (CC BY-NC-SA 4.0) license](https://creativecommons.org/licenses/by-nc-sa/4.0/). This licensing framework ensures that our contributions can be freely used for non-commercial research purposes, while also encouraging contributions and modifications, provided that the original work is properly cited and any derivative works are shared under similar terms. |
| |
|
| | For commercial inquiries related to MR-RATE, please contact: contact@forithmus.com. |
