Datasets:

---

FriendVsFoe

/

AstroBio

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Josephine and Sasha 2

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 1 new columns ({'label'}) and 499 missing columns ({'guln__L', 'fe3', 'tcynt', 'phe__L', 'ascb__L', 'udpacgal', 'coa', 'no2', 'fecrm', 'xtsn', 'ppt', 'araban__L', 'pydam', 'acgam1p', 'murein4px4px4p', 'man6p', 'acac', 'o2', 'tma', 'thr__L', 'oxa', 'omclo', 'h2co3', 'but', 'id3acald', 'dump', 'duri', 'akg', 'r5p', 'sulfac', 'oaa', 'cu2', 'tc7', 'succ', '3pg', 'glyc2p', 'udpglcur', 'cell6', 'lys__L', 'acon_C', 'mso3', '2dhglcn', 'alltn', 'g1p', 'skm', 'tag__D', 'vanln', 'pheme', 'nmn', 'gam6p', 'tmp', 'istnt', 'fuc__L', 'murein4px4p', 'hco3', 'idon__L', 'ile__L', 'cl', 'nh4', 'arbt', 'tym', 'no3', 'hg2', 'colipap', 'tyr__L', 'cd2', 'ttrcyc', '3hpppn', 'glcn', 'u4', '3hoxpac', '3mb', 'salchs4', 'bmn', 'ocdcea', 'ac', 'feenter', 'cgly', 'cu', 'uri', 'chols', '26dap__M', 'ade', 'galman4', 'phenol', 'chtbs', 'tcb', 'hqn', '6pgc', 'h', 'dcyt', 'so3', 'halipa', 'murein5px3p', 'citr__L', 'tmao', 'xmp', 'ump', 'orn__L', 'glyclt', 'thymd', 'h2', 'pala', 'galman6', 'imp', 'quin', 'xyl3', '14glucan', 'acolipa', 'anhgm', 'fecrm_un', 'orot', 'tartr__L', 'ctbt', 'abt__L', 'hxa', '13ppd', 'eca4colipa', '34dhpac', 'salchsx', 'gtp', '4crsol', 'u6', 'Lcyst', 'galt', 'aso3', 'pro__L', 'cellb', 'gln__L', 'lac__L', 'udcpdp', 'malthx', 'mantr', 'ser__D', '4hbald', 'inost', 'airs', 'chor', 'manglyc', '5mtr', 'cys__L', 'cpgn_un', 'acser', 'murein5px4p', 'srb__L', '15dap', '2pg', 'v4', 'maltpt', 'gam', 'diact', 'ppal', 'mnl', 'pep', 'asn__L', 'glucan1500', 'starch', 'udpgal', 'ethso3', 'salchs4fe', 'lmn2', 'pac', 'acmum', 'amylose300', 'dha', 'xyl__D',
...
'udcpo5', 'murein5p5p5p', '23dhbzs3', 'pser__D', 'drib', 'm_xyl', 'sula', 'fruur', 'g3ps', 'hxan', 'cmp', 'fusa', 'mal__D', 'raffin', 'glucan6', 'p_xyl', 'indole', 'h2o2', 'malt', 'fru', 'colipa', 'dextrin', 'lipa_cold', 'ppoh', 'crn', '34dhbz', 'catechol', 'mal__L', 'acnam', 'galur', 'his__L', 'btoh', 'bz', 'mg2', 'icit', 'peamn', 'manttr', 'rmn', 'madg', '4hba', 'co', 'lyx__L', 'enter', 'fe3dcit', '5dglcn', 'rnam', '4hphac', 'tet', 'man1p', '23ccmp', 'csn', 'glcman600', 'cpgn', 'lcts', '2obut', 'LalaDgluMdapDala', 'dxyl', 'kdo2lipid4', 'dca', 'h2o', 'n2o', 'g3pi', '3ump', 'acysbmn', '2hxmp', 'mbdg', 'ura', '3hpp', 'pnto__R', 'actn__R', 'cobalt2', 'fe2', 'urea', 'ibt', 'ncam', 'glcur1p', 'gal', 'tartr__D', 'leu__L', 'adn', 'xylan8', 'f6p', '3hcinnm', 'thm', 'murein5p5p', 'doxrbcn', 'glyald', 'feroxE', 'metsox_R__L', 'feroxEfe', '3gmp', 'uaagmda', 'progly', '34dhcinm', 'lipb', 'fol', 'enlipa', '4hthr', 'acgal', 'salchs2', 'spmd', 'gm1lipa', 'glyc3p', 'g3pe', 'galman600', 'dgmp', 'na1', 'glyc__R', 'omcho', 'cyst__L', 'pydx', 'omchr', 'amp', 'h2s', 'rfamp', 'o16a4colipa', 'glcman4', '4hoxpac', 'ptrc', 'ddca', '12ppd__R', '4abut', 'omclr', 'gbbtn', 'fe3hox', 'acald', 'octa', 'starch1200', 'murein5px4px4p', 'ppi', 'Larab', 'arab__D', 'zn2', 'orn', 'glycogen', 'all__D', 'frmd', 'ca2', 'hdca', 'cro4', 'dcmp', 'maltttr', 'agm', 'ppa', 'pppn', 'malttr', 'sbt__D', '3amp', 'galctr__D', 'glu__D', 'dmso', '4hbz', 'gmp', '23cgmp', 'eths', 'galctn__D', 'feoxam_un', 'v5', '3httdca', 'glyc'}).

This happened while the csv dataset builder was generating data using

hf://datasets/FriendVsFoe/AstroBio/y_train.csv (at revision bb0ad0ed6e5a88ebaf4160116a3e764900481449), [/tmp/hf-datasets-cache/medium/datasets/80564217941539-config-parquet-and-info-FriendVsFoe-AstroBio-72f5db4d/hub/datasets--FriendVsFoe--AstroBio/snapshots/bb0ad0ed6e5a88ebaf4160116a3e764900481449/X_train.csv (origin=hf://datasets/FriendVsFoe/AstroBio@bb0ad0ed6e5a88ebaf4160116a3e764900481449/X_train.csv), /tmp/hf-datasets-cache/medium/datasets/80564217941539-config-parquet-and-info-FriendVsFoe-AstroBio-72f5db4d/hub/datasets--FriendVsFoe--AstroBio/snapshots/bb0ad0ed6e5a88ebaf4160116a3e764900481449/y_train.csv (origin=hf://datasets/FriendVsFoe/AstroBio@bb0ad0ed6e5a88ebaf4160116a3e764900481449/y_train.csv)]

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1890, in _prepare_split_single
                  writer.write_table(table)
                File "/usr/local/lib/python3.12/site-packages/datasets/arrow_writer.py", line 760, in write_table
                  pa_table = table_cast(pa_table, self._schema)
                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2272, in table_cast
                  return cast_table_to_schema(table, schema)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/table.py", line 2218, in cast_table_to_schema
                  raise CastError(
              datasets.table.CastError: Couldn't cast
              label: int64
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 369
              to
              {'12ppd__R': Value('int64'), '12ppd__S': Value('int64'), '13ppd': Value('int64'), '14glucan': Value('int64'), '15dap': Value('int64'), '23camp': Value('int64'), '23ccmp': Value('int64'), '23cgmp': Value('int64'), '23cump': Value('int64'), '23dappa': Value('int64'), '23dhbzs3': Value('int64'), '26dap__M': Value('int64'), '2ddglcn': Value('int64'), '2dhglcn': Value('int64'), '2hxmp': Value('int64'), '2obut': Value('int64'), '2pg': Value('int64'), '2pglyc': Value('int64'), '34dhbz': Value('int64'), '34dhcinm': Value('int64'), '34dhpac': Value('int64'), '3amp': Value('int64'), '3cmp': Value('int64'), '3gmp': Value('int64'), '3hcinnm': Value('int64'), '3hoxpac': Value('int64'), '3hpp': Value('int64'), '3hpppn': Value('int64'), '3httdca': Value('int64'), '3mb': Value('int64'), '3oxoadp': Value('int64'), '3pg': Value('int64'), '3ump': Value('int64'), '4abut': Value('int64'), '4abz': Value('int64'), '4crsol': Value('int64'), '4hba': Value('int64'), '4hbald': Value('int64'), '4hbz': Value('int64'), '4hoxpac': Value('int64'), '4hoxpacd': Value('int64'), '4hphac': Value('int64'), '4hthr': Value('int64'), '5dglcn': Value('int64'), '5mtr': Value('int64'), '6pgc': Value('int64'), 'LalaDgluMdapDala': Value('int64'), 'LalaDgluMdap': Value('int64'), 'LalaDglu': Value('int64'), 'LalaLglu': Value('int64'), 'Larab': Value('int64'), 'Lcyst': Value('int64'), 'T4hcinnm': Value('int64'), 'abt__L': Value('int64'), 'ac': Value('int64'), 'acac': Value('int64'), 'acald': Value('int64'), 'acgal1p': Value
              ...
              sulfac': Value('int64'), 'tag__D': Value('int64'), 'tartr__D': Value('int64'), 'tartr__L': Value('int64'), 'taur': Value('int64'), 'tc4': Value('int64'), 'tc7': Value('int64'), 'tcb': Value('int64'), 'tcynt': Value('int64'), 'tet': Value('int64'), 'thm': Value('int64'), 'thr__L': Value('int64'), 'thrp': Value('int64'), 'thym': Value('int64'), 'thymd': Value('int64'), 'tma': Value('int64'), 'tmao': Value('int64'), 'tmp': Value('int64'), 'tol': Value('int64'), 'tre': Value('int64'), 'trp__L': Value('int64'), 'tsul': Value('int64'), 'ttdca': Value('int64'), 'ttdcea': Value('int64'), 'tton': Value('int64'), 'ttrcyc': Value('int64'), 'tym': Value('int64'), 'tyr__L': Value('int64'), 'tyrp': Value('int64'), 'u4': Value('int64'), 'u6': Value('int64'), 'uaagmda': Value('int64'), 'uacgam': Value('int64'), 'udcpdp': Value('int64'), 'udcpo5': Value('int64'), 'udcpp': Value('int64'), 'udpacgal': Value('int64'), 'udpg': Value('int64'), 'udpgal': Value('int64'), 'udpglcur': Value('int64'), 'ump': Value('int64'), 'ura': Value('int64'), 'urate': Value('int64'), 'urea': Value('int64'), 'uri': Value('int64'), 'v4': Value('int64'), 'v5': Value('int64'), 'val__L': Value('int64'), 'vanln': Value('int64'), 'vanlt': Value('int64'), 'xan': Value('int64'), 'xmp': Value('int64'), 'xtsn': Value('int64'), 'xyl3': Value('int64'), 'xyl__D': Value('int64'), 'xylan12': Value('int64'), 'xylan4': Value('int64'), 'xylan8': Value('int64'), 'xylb': Value('int64'), 'xylu__L': Value('int64'), 'zn2': Value('int64')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1347, in compute_config_parquet_and_info_response
                  parquet_operations = convert_to_parquet(builder)
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 980, in convert_to_parquet
                  builder.download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 884, in download_and_prepare
                  self._download_and_prepare(
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 947, in _download_and_prepare
                  self._prepare_split(split_generator, **prepare_split_kwargs)
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1739, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/builder.py", line 1892, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 1 new columns ({'label'}) and 499 missing columns ({'guln__L', 'fe3', 'tcynt', 'phe__L', 'ascb__L', 'udpacgal', 'coa', 'no2', 'fecrm', 'xtsn', 'ppt', 'araban__L', 'pydam', 'acgam1p', 'murein4px4px4p', 'man6p', 'acac', 'o2', 'tma', 'thr__L', 'oxa', 'omclo', 'h2co3', 'but', 'id3acald', 'dump', 'duri', 'akg', 'r5p', 'sulfac', 'oaa', 'cu2', 'tc7', 'succ', '3pg', 'glyc2p', 'udpglcur', 'cell6', 'lys__L', 'acon_C', 'mso3', '2dhglcn', 'alltn', 'g1p', 'skm', 'tag__D', 'vanln', 'pheme', 'nmn', 'gam6p', 'tmp', 'istnt', 'fuc__L', 'murein4px4p', 'hco3', 'idon__L', 'ile__L', 'cl', 'nh4', 'arbt', 'tym', 'no3', 'hg2', 'colipap', 'tyr__L', 'cd2', 'ttrcyc', '3hpppn', 'glcn', 'u4', '3hoxpac', '3mb', 'salchs4', 'bmn', 'ocdcea', 'ac', 'feenter', 'cgly', 'cu', 'uri', 'chols', '26dap__M', 'ade', 'galman4', 'phenol', 'chtbs', 'tcb', 'hqn', '6pgc', 'h', 'dcyt', 'so3', 'halipa', 'murein5px3p', 'citr__L', 'tmao', 'xmp', 'ump', 'orn__L', 'glyclt', 'thymd', 'h2', 'pala', 'galman6', 'imp', 'quin', 'xyl3', '14glucan', 'acolipa', 'anhgm', 'fecrm_un', 'orot', 'tartr__L', 'ctbt', 'abt__L', 'hxa', '13ppd', 'eca4colipa', '34dhpac', 'salchsx', 'gtp', '4crsol', 'u6', 'Lcyst', 'galt', 'aso3', 'pro__L', 'cellb', 'gln__L', 'lac__L', 'udcpdp', 'malthx', 'mantr', 'ser__D', '4hbald', 'inost', 'airs', 'chor', 'manglyc', '5mtr', 'cys__L', 'cpgn_un', 'acser', 'murein5px4p', 'srb__L', '15dap', '2pg', 'v4', 'maltpt', 'gam', 'diact', 'ppal', 'mnl', 'pep', 'asn__L', 'glucan1500', 'starch', 'udpgal', 'ethso3', 'salchs4fe', 'lmn2', 'pac', 'acmum', 'amylose300', 'dha', 'xyl__D',
              ...
              'udcpo5', 'murein5p5p5p', '23dhbzs3', 'pser__D', 'drib', 'm_xyl', 'sula', 'fruur', 'g3ps', 'hxan', 'cmp', 'fusa', 'mal__D', 'raffin', 'glucan6', 'p_xyl', 'indole', 'h2o2', 'malt', 'fru', 'colipa', 'dextrin', 'lipa_cold', 'ppoh', 'crn', '34dhbz', 'catechol', 'mal__L', 'acnam', 'galur', 'his__L', 'btoh', 'bz', 'mg2', 'icit', 'peamn', 'manttr', 'rmn', 'madg', '4hba', 'co', 'lyx__L', 'enter', 'fe3dcit', '5dglcn', 'rnam', '4hphac', 'tet', 'man1p', '23ccmp', 'csn', 'glcman600', 'cpgn', 'lcts', '2obut', 'LalaDgluMdapDala', 'dxyl', 'kdo2lipid4', 'dca', 'h2o', 'n2o', 'g3pi', '3ump', 'acysbmn', '2hxmp', 'mbdg', 'ura', '3hpp', 'pnto__R', 'actn__R', 'cobalt2', 'fe2', 'urea', 'ibt', 'ncam', 'glcur1p', 'gal', 'tartr__D', 'leu__L', 'adn', 'xylan8', 'f6p', '3hcinnm', 'thm', 'murein5p5p', 'doxrbcn', 'glyald', 'feroxE', 'metsox_R__L', 'feroxEfe', '3gmp', 'uaagmda', 'progly', '34dhcinm', 'lipb', 'fol', 'enlipa', '4hthr', 'acgal', 'salchs2', 'spmd', 'gm1lipa', 'glyc3p', 'g3pe', 'galman600', 'dgmp', 'na1', 'glyc__R', 'omcho', 'cyst__L', 'pydx', 'omchr', 'amp', 'h2s', 'rfamp', 'o16a4colipa', 'glcman4', '4hoxpac', 'ptrc', 'ddca', '12ppd__R', '4abut', 'omclr', 'gbbtn', 'fe3hox', 'acald', 'octa', 'starch1200', 'murein5px4px4p', 'ppi', 'Larab', 'arab__D', 'zn2', 'orn', 'glycogen', 'all__D', 'frmd', 'ca2', 'hdca', 'cro4', 'dcmp', 'maltttr', 'agm', 'ppa', 'pppn', 'malttr', 'sbt__D', '3amp', 'galctr__D', 'glu__D', 'dmso', '4hbz', 'gmp', '23cgmp', 'eths', 'galctn__D', 'feoxam_un', 'v5', '3httdca', 'glyc'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/FriendVsFoe/AstroBio/y_train.csv (at revision bb0ad0ed6e5a88ebaf4160116a3e764900481449), [/tmp/hf-datasets-cache/medium/datasets/80564217941539-config-parquet-and-info-FriendVsFoe-AstroBio-72f5db4d/hub/datasets--FriendVsFoe--AstroBio/snapshots/bb0ad0ed6e5a88ebaf4160116a3e764900481449/X_train.csv (origin=hf://datasets/FriendVsFoe/AstroBio@bb0ad0ed6e5a88ebaf4160116a3e764900481449/X_train.csv), /tmp/hf-datasets-cache/medium/datasets/80564217941539-config-parquet-and-info-FriendVsFoe-AstroBio-72f5db4d/hub/datasets--FriendVsFoe--AstroBio/snapshots/bb0ad0ed6e5a88ebaf4160116a3e764900481449/y_train.csv (origin=hf://datasets/FriendVsFoe/AstroBio@bb0ad0ed6e5a88ebaf4160116a3e764900481449/y_train.csv)]
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)