id int64 0 190k | prompt stringlengths 21 13.4M | docstring stringlengths 1 12k ⌀ |
|---|---|---|
10,858 | from typing import List, Optional, Union
import numpy as np
from PIL import Image
from transformers.image_utils import PILImageResampling
from ...feature_extraction_utils import BatchFeature, FeatureExtractionMixin
from ...image_utils import ImageFeatureExtractionMixin, is_torch_tensor
from ...utils import TensorType, is_pytesseract_available, logging, requires_backends
def normalize_box(box, width, height):
return [
int(1000 * (box[0] / width)),
int(1000 * (box[1] / height)),
int(1000 * (box[2] / width)),
int(1000 * (box[3] / height)),
]
The provided code snippet includes necessary dependencies for implementing the `apply_tesseract` function. Write a Python function `def apply_tesseract(image: Image.Image, lang: Optional[str], tesseract_config: Optional[str])` to solve the following problem:
Applies Tesseract OCR on a document image, and returns recognized words + normalized bounding boxes.
Here is the function:
def apply_tesseract(image: Image.Image, lang: Optional[str], tesseract_config: Optional[str]):
"""Applies Tesseract OCR on a document image, and returns recognized words + normalized bounding boxes."""
# apply OCR
data = pytesseract.image_to_data(image, lang=lang, output_type="dict", config=tesseract_config)
words, left, top, width, height = data["text"], data["left"], data["top"], data["width"], data["height"]
# filter empty words and corresponding coordinates
irrelevant_indices = [idx for idx, word in enumerate(words) if not word.strip()]
words = [word for idx, word in enumerate(words) if idx not in irrelevant_indices]
left = [coord for idx, coord in enumerate(left) if idx not in irrelevant_indices]
top = [coord for idx, coord in enumerate(top) if idx not in irrelevant_indices]
width = [coord for idx, coord in enumerate(width) if idx not in irrelevant_indices]
height = [coord for idx, coord in enumerate(height) if idx not in irrelevant_indices]
# turn coordinates into (left, top, left+width, top+height) format
actual_boxes = []
for x, y, w, h in zip(left, top, width, height):
actual_box = [x, y, x + w, y + h]
actual_boxes.append(actual_box)
image_width, image_height = image.size
# finally, normalize the bounding boxes
normalized_boxes = []
for box in actual_boxes:
normalized_boxes.append(normalize_box(box, image_width, image_height))
assert len(words) == len(normalized_boxes), "Not as many words as there are bounding boxes"
return words, normalized_boxes | Applies Tesseract OCR on a document image, and returns recognized words + normalized bounding boxes. |
10,859 | import math
import warnings
from typing import Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import (
BaseModelOutput,
CausalLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
Wav2Vec2BaseModelOutput,
XVectorOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import torch_int_div
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_data2vec_audio import Data2VecAudioConfig
The provided code snippet includes necessary dependencies for implementing the `_compute_mask_indices` function. Write a Python function `def _compute_mask_indices( shape: Tuple[int, int], mask_prob: float, mask_length: int, attention_mask: Optional[torch.LongTensor] = None, min_masks: int = 0, ) -> np.ndarray` to solve the following problem:
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on CPU as part of the preprocessing during training. Args: shape: The shape for which to compute masks. This should be of a tuple of size 2 where the first element is the batch size and the second element is the length of the axis to span. mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of independently generated mask spans of length `mask_length` is computed by `mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the actual percentage will be smaller. mask_length: size of the mask min_masks: minimum number of masked spans attention_mask: A (right-padded) attention mask which independently shortens the feature axis of each batch dimension.
Here is the function:
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
attention_mask: Optional[torch.LongTensor] = None,
min_masks: int = 0,
) -> np.ndarray:
"""
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for
ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on
CPU as part of the preprocessing during training.
Args:
shape: The shape for which to compute masks. This should be of a tuple of size 2 where
the first element is the batch size and the second element is the length of the axis to span.
mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of
independently generated mask spans of length `mask_length` is computed by
`mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the
actual percentage will be smaller.
mask_length: size of the mask
min_masks: minimum number of masked spans
attention_mask: A (right-padded) attention mask which independently shortens the feature axis of
each batch dimension.
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length}"
f" and `sequence_length`: {sequence_length}`"
)
# epsilon is used for probabilistic rounding
epsilon = np.random.rand(1).item()
def compute_num_masked_span(input_length):
"""Given input length, compute how many spans should be masked"""
num_masked_span = int(mask_prob * input_length / mask_length + epsilon)
num_masked_span = max(num_masked_span, min_masks)
# make sure num masked span <= sequence_length
if num_masked_span * mask_length > sequence_length:
num_masked_span = sequence_length // mask_length
# make sure num_masked span is also <= input_length - (mask_length - 1)
if input_length - (mask_length - 1) < num_masked_span:
num_masked_span = max(input_length - (mask_length - 1), 0)
return num_masked_span
# compute number of masked spans in batch
input_lengths = (
attention_mask.sum(-1).detach().tolist()
if attention_mask is not None
else [sequence_length for _ in range(batch_size)]
)
# SpecAugment mask to fill
spec_aug_mask = np.zeros((batch_size, sequence_length), dtype=bool)
spec_aug_mask_idxs = []
max_num_masked_span = compute_num_masked_span(sequence_length)
if max_num_masked_span == 0:
return spec_aug_mask
for input_length in input_lengths:
# compute num of masked spans for this input
num_masked_span = compute_num_masked_span(input_length)
# get random indices to mask
spec_aug_mask_idx = np.random.choice(
np.arange(input_length - (mask_length - 1)), num_masked_span, replace=False
)
# pick first sampled index that will serve as a dummy index to pad vector
# to ensure same dimension for all batches due to probabilistic rounding
# Picking first sample just pads those vectors twice.
if len(spec_aug_mask_idx) == 0:
# this case can only happen if `input_length` is strictly smaller then
# `sequence_length` in which case the last token has to be a padding
# token which we can use as a dummy mask id
dummy_mask_idx = sequence_length - 1
else:
dummy_mask_idx = spec_aug_mask_idx[0]
spec_aug_mask_idx = np.concatenate(
[spec_aug_mask_idx, np.ones(max_num_masked_span - num_masked_span, dtype=np.int32) * dummy_mask_idx]
)
spec_aug_mask_idxs.append(spec_aug_mask_idx)
spec_aug_mask_idxs = np.array(spec_aug_mask_idxs)
# expand masked indices to masked spans
spec_aug_mask_idxs = np.broadcast_to(
spec_aug_mask_idxs[:, :, None], (batch_size, max_num_masked_span, mask_length)
)
spec_aug_mask_idxs = spec_aug_mask_idxs.reshape(batch_size, max_num_masked_span * mask_length)
# add offset to the starting indexes so that indexes now create a span
offsets = np.arange(mask_length)[None, None, :]
offsets = np.broadcast_to(offsets, (batch_size, max_num_masked_span, mask_length)).reshape(
batch_size, max_num_masked_span * mask_length
)
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# ensure that we cannot have indices larger than sequence_length
if spec_aug_mask_idxs.max() > sequence_length - 1:
spec_aug_mask_idxs[spec_aug_mask_idxs > sequence_length - 1] = sequence_length - 1
# scatter indices to mask
np.put_along_axis(spec_aug_mask, spec_aug_mask_idxs, 1, -1)
return spec_aug_mask | Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on CPU as part of the preprocessing during training. Args: shape: The shape for which to compute masks. This should be of a tuple of size 2 where the first element is the batch size and the second element is the length of the axis to span. mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of independently generated mask spans of length `mask_length` is computed by `mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the actual percentage will be smaller. mask_length: size of the mask min_masks: minimum number of masked spans attention_mask: A (right-padded) attention mask which independently shortens the feature axis of each batch dimension. |
10,860 | import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN, gelu
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_data2vec_text import Data2VecTextConfig
The provided code snippet includes necessary dependencies for implementing the `create_position_ids_from_input_ids` function. Write a Python function `def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0)` to solve the following problem:
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: torch.Tensor x: Returns: torch.Tensor
Here is the function:
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx | Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: torch.Tensor x: Returns: torch.Tensor |
10,861 | import collections.abc
import math
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPooling,
ImageClassifierOutput,
SemanticSegmenterOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_data2vec_vision import Data2VecVisionConfig
The provided code snippet includes necessary dependencies for implementing the `drop_path` function. Write a Python function `def drop_path(input: torch.Tensor, drop_prob: float = 0.0, training: bool = False) -> torch.Tensor` to solve the following problem:
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks, however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper... See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the argument.
Here is the function:
def drop_path(input: torch.Tensor, drop_prob: float = 0.0, training: bool = False) -> torch.Tensor:
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output | Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks, however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper... See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the argument. |
10,862 | import argparse
import os
from functools import reduce
import fairseq
import torch
from datasets import load_dataset
from transformers import Wav2Vec2Processor, logging
from transformers.models.data2vec.configuration_data2vec_audio import Data2VecAudioConfig
from transformers.models.data2vec.data2vec_audio import Data2VecAudioModel as Dummy
from transformers.models.data2vec.modeling_data2vec_audio import Data2VecAudioForCTC, Data2VecAudioModel
def recursively_load_weights(fairseq_model, hf_model, is_headless):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
if not is_headless:
feature_extractor = hf_model.data2vec_audio.feature_extractor
pos_conv_embedding = hf_model.data2vec_audio.encoder.pos_conv_embed
else:
feature_extractor = hf_model.feature_extractor
pos_conv_embedding = hf_model.encoder.pos_conv_embed
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
)
is_used = True
elif "pos_conv" in name:
load_pos_conv_layer(
name,
value,
pos_conv_embedding,
unused_weights,
)
is_used = True
else:
for key, mapped_key in MAPPING.items():
if not is_headless:
mapped_key = "data2vec_audio." + mapped_key if mapped_key not in TOP_LEVEL_KEYS else mapped_key
if key in name or key.split("w2v_model.")[-1] == name.split(".")[0]:
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "bias" in name:
weight_type = "bias"
elif "weight" in name:
# TODO: don't match quantizer.weight_proj
weight_type = "weight"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
The provided code snippet includes necessary dependencies for implementing the `convert_wav2vec2_checkpoint` function. Write a Python function `def convert_wav2vec2_checkpoint( checkpoint_path, pytorch_dump_folder_path, config_path=None, dict_path=None, is_finetuned=True )` to solve the following problem:
Copy/paste/tweak model's weights to transformers design.
Here is the function:
def convert_wav2vec2_checkpoint(
checkpoint_path, pytorch_dump_folder_path, config_path=None, dict_path=None, is_finetuned=True
):
"""
Copy/paste/tweak model's weights to transformers design.
"""
if config_path is not None:
config = Data2VecAudioConfig.from_pretrained(config_path)
else:
config = Data2VecAudioConfig()
if not is_finetuned:
# Modify final_proj layer name
hf_wav2vec = Data2VecAudioModel(config)
data2vec_checkpoint_dir = os.path.dirname(checkpoint_path)
state_dict = torch.load(checkpoint_path)
state_dict["model"]["final_proj.weight"] = state_dict["model"].pop("final_proj.0.weight")
state_dict["model"]["final_proj.bias"] = state_dict["model"].pop("final_proj.0.bias")
converted_ckpt = os.path.join(data2vec_checkpoint_dir, "converted.pt")
torch.save(state_dict, converted_ckpt)
else:
hf_wav2vec = Data2VecAudioForCTC(config)
converted_ckpt = checkpoint_path
def load_data2vec(path):
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task([path])
return model[0].eval()
model = load_data2vec(converted_ckpt)
recursively_load_weights(model, hf_wav2vec, not is_finetuned)
processor = Wav2Vec2Processor.from_pretrained("facebook/wav2vec2-large-lv60")
ds = load_dataset("patrickvonplaten/librispeech_asr_dummy", "clean", split="validation")
input_audio = [x["array"] for x in ds[:4]["audio"]]
inputs = processor(input_audio, return_tensors="pt", padding=True)
input_values = inputs.input_values
attention_mask = inputs.attention_mask
# input_values = inputs.input_values[:, :-1]
# attention_mask = inputs.attention_mask[:, :-1]
hf_wav2vec.eval()
model.eval()
if is_finetuned:
their_output = model(source=input_values, padding_mask=(1 - attention_mask), mask=False, features_only=True)[
"encoder_out"
].transpose(0, 1)
our_output = hf_wav2vec(input_values, attention_mask=attention_mask)["logits"]
pred_ids = torch.argmax(our_output, dim=-1)
output_string = processor.batch_decode(pred_ids)
print(f"Expected Output: {ds[:4]['text']}, Pred: {output_string}")
else:
their_output = model(source=input_values, padding_mask=(1 - attention_mask), mask=False, features_only=True)[
"layer_results"
][-1][0].transpose(0, 1)
our_output = hf_wav2vec(input_values, attention_mask=attention_mask)["last_hidden_state"]
print(our_output.shape, their_output.shape)
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-7
success = torch.allclose(our_output, their_output, atol=1e-3)
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
hf_wav2vec.save_pretrained(pytorch_dump_folder_path)
if is_finetuned:
processor.save_pretrained(pytorch_dump_folder_path)
else:
processor.feature_extractor.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to transformers design. |
10,863 | import argparse
import os
import pathlib
import fairseq
import torch
from fairseq.modules import TransformerSentenceEncoderLayer
from packaging import version
from transformers import Data2VecTextConfig, Data2VecTextForMaskedLM, Data2VecTextForSequenceClassification
from transformers.models.bert.modeling_bert import (
BertIntermediate,
BertLayer,
BertOutput,
BertSelfAttention,
BertSelfOutput,
)
from transformers.models.data2vec.data2vec_text import Data2VecTextModel
from transformers.utils import logging
SAMPLE_TEXT = "Hello world! cécé herlolip"
The provided code snippet includes necessary dependencies for implementing the `convert_data2vec_checkpoint_to_pytorch` function. Write a Python function `def convert_data2vec_checkpoint_to_pytorch( data2vec_checkpoint_path: str, pytorch_dump_folder_path: str, classification_head: bool )` to solve the following problem:
Copy/paste/tweak data2vec's weights to our BERT structure.
Here is the function:
def convert_data2vec_checkpoint_to_pytorch(
data2vec_checkpoint_path: str, pytorch_dump_folder_path: str, classification_head: bool
):
"""
Copy/paste/tweak data2vec's weights to our BERT structure.
"""
data2vec_checkpoint_dir, data2vec_checkpoint_file_name = os.path.split(data2vec_checkpoint_path)
data2vec = Data2VecTextModel.from_pretrained(
data2vec_checkpoint_dir, checkpoint_file=data2vec_checkpoint_file_name
)
data2vec.eval() # disable dropout
data2vec_model = data2vec.models[0]
data2vec_sent_encoder = data2vec_model.encoder.sentence_encoder
config = Data2VecTextConfig(
vocab_size=data2vec_sent_encoder.embed_tokens.num_embeddings,
hidden_size=data2vec_model.args.encoder_embed_dim,
num_hidden_layers=data2vec_model.args.encoder_layers,
num_attention_heads=data2vec_model.args.encoder_attention_heads,
intermediate_size=data2vec_model.args.encoder_ffn_embed_dim,
max_position_embeddings=514,
type_vocab_size=1,
layer_norm_eps=1e-5, # PyTorch default used in fairseq
)
if classification_head:
config.num_labels = data2vec.model.classification_heads["mnli"].out_proj.weight.shape[0]
print("Our BERT config:", config)
model = Data2VecTextForSequenceClassification(config) if classification_head else Data2VecTextForMaskedLM(config)
model.eval()
# Now let's copy all the weights.
# Embeddings
model.data2vec_text.embeddings.word_embeddings.weight = data2vec_sent_encoder.embed_tokens.weight
model.data2vec_text.embeddings.position_embeddings.weight = data2vec_sent_encoder.embed_positions.weight
model.data2vec_text.embeddings.token_type_embeddings.weight.data = torch.zeros_like(
model.data2vec_text.embeddings.token_type_embeddings.weight
) # just zero them out b/c data2vec doesn't use them.
model.data2vec_text.embeddings.LayerNorm.weight = data2vec_sent_encoder.layernorm_embedding.weight
model.data2vec_text.embeddings.LayerNorm.bias = data2vec_sent_encoder.layernorm_embedding.bias
for i in range(config.num_hidden_layers):
# Encoder: start of layer
layer: BertLayer = model.data2vec_text.encoder.layer[i]
data2vec_layer: TransformerSentenceEncoderLayer = data2vec_sent_encoder.layers[i]
# self attention
self_attn: BertSelfAttention = layer.attention.self
assert data2vec_layer.self_attn.k_proj.weight.data.shape == torch.Size(
(config.hidden_size, config.hidden_size)
), (
"Shape for data2vec_layer.self_attn.k_proj.weight.data should be"
f" {torch.Size((config.hidden_size, config.hidden_size))}"
)
assert data2vec_layer.self_attn.q_proj.weight.data.shape == torch.Size(
(config.hidden_size, config.hidden_size)
), (
"Shape for data2vec_layer.self_attn.q_proj.weight.data should be"
f" {torch.Size((config.hidden_size, config.hidden_size))}"
)
assert data2vec_layer.self_attn.v_proj.weight.data.shape == torch.Size(
(config.hidden_size, config.hidden_size)
), (
"Shape for data2vec_layer.self_attn.v_proj.weight.data should be"
f" {torch.Size((config.hidden_size, config.hidden_size))}"
)
self_attn.query.weight.data = data2vec_layer.self_attn.q_proj.weight
self_attn.query.bias.data = data2vec_layer.self_attn.q_proj.bias
self_attn.key.weight.data = data2vec_layer.self_attn.k_proj.weight
self_attn.key.bias.data = data2vec_layer.self_attn.k_proj.bias
self_attn.value.weight.data = data2vec_layer.self_attn.v_proj.weight
self_attn.value.bias.data = data2vec_layer.self_attn.v_proj.bias
# self-attention output
self_output: BertSelfOutput = layer.attention.output
assert (
self_output.dense.weight.shape == data2vec_layer.self_attn.out_proj.weight.shape
), f"Shape for self_output.dense.weight should be {data2vec_layer.self_attn.out_proj.weight.shape}"
self_output.dense.weight = data2vec_layer.self_attn.out_proj.weight
self_output.dense.bias = data2vec_layer.self_attn.out_proj.bias
self_output.LayerNorm.weight = data2vec_layer.self_attn_layer_norm.weight
self_output.LayerNorm.bias = data2vec_layer.self_attn_layer_norm.bias
# intermediate
intermediate: BertIntermediate = layer.intermediate
assert (
intermediate.dense.weight.shape == data2vec_layer.fc1.weight.shape
), f"Shape for intermediate.dense.weight should be {data2vec_layer.fc1.weight.shape}"
intermediate.dense.weight = data2vec_layer.fc1.weight
intermediate.dense.bias = data2vec_layer.fc1.bias
# output
bert_output: BertOutput = layer.output
assert (
bert_output.dense.weight.shape == data2vec_layer.fc2.weight.shape
), f"Shape for bert_output.dense.weight should be {data2vec_layer.fc2.weight.shape}"
bert_output.dense.weight = data2vec_layer.fc2.weight
bert_output.dense.bias = data2vec_layer.fc2.bias
bert_output.LayerNorm.weight = data2vec_layer.final_layer_norm.weight
bert_output.LayerNorm.bias = data2vec_layer.final_layer_norm.bias
# end of layer
if classification_head:
model.classifier.dense.weight = data2vec.model.classification_heads["mnli"].dense.weight
model.classifier.dense.bias = data2vec.model.classification_heads["mnli"].dense.bias
model.classifier.out_proj.weight = data2vec.model.classification_heads["mnli"].out_proj.weight
model.classifier.out_proj.bias = data2vec.model.classification_heads["mnli"].out_proj.bias
else:
# LM Head
model.lm_head.dense.weight = data2vec_model.encoder.lm_head.dense.weight
model.lm_head.dense.bias = data2vec_model.encoder.lm_head.dense.bias
model.lm_head.layer_norm.weight = data2vec_model.encoder.lm_head.layer_norm.weight
model.lm_head.layer_norm.bias = data2vec_model.encoder.lm_head.layer_norm.bias
model.lm_head.decoder.weight = data2vec_model.encoder.lm_head.weight
model.lm_head.decoder.bias = data2vec_model.encoder.lm_head.bias
# Let's check that we get the same results.
input_ids: torch.Tensor = data2vec.encode(SAMPLE_TEXT).unsqueeze(0) # batch of size 1
our_output = model(input_ids)[0]
if classification_head:
their_output = data2vec.model.classification_heads["mnli"](data2vec.extract_features(input_ids))
else:
their_output = data2vec_model(input_ids)[0]
print(our_output.shape, their_output.shape)
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-7
success = torch.allclose(our_output, their_output, atol=1e-3)
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
pathlib.Path(pytorch_dump_folder_path).mkdir(parents=True, exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak data2vec's weights to our BERT structure. |
10,864 | import argparse
import json
import torch
from PIL import Image
from huggingface_hub import hf_hub_download
from timm.models import create_model
from transformers import (
BeitFeatureExtractor,
Data2VecVisionConfig,
Data2VecVisionForImageClassification,
Data2VecVisionModel,
)
def create_rename_keys(config, has_lm_head=False, is_semantic=False, hf_prefix="data2vec."):
prefix = "backbone." if is_semantic else ""
rename_keys = []
for i in range(config.num_hidden_layers):
# encoder layers: output projection, 2 feedforward neural networks and 2 layernorms
rename_keys.append(
(f"{prefix}blocks.{i}.norm1.weight", f"{hf_prefix}encoder.layer.{i}.layernorm_before.weight")
)
rename_keys.append((f"{prefix}blocks.{i}.norm1.bias", f"{hf_prefix}encoder.layer.{i}.layernorm_before.bias"))
rename_keys.append(
(f"{prefix}blocks.{i}.attn.proj.weight", f"{hf_prefix}encoder.layer.{i}.attention.output.dense.weight")
)
rename_keys.append(
(f"{prefix}blocks.{i}.attn.proj.bias", f"{hf_prefix}encoder.layer.{i}.attention.output.dense.bias")
)
rename_keys.append(
(f"{prefix}blocks.{i}.norm2.weight", f"{hf_prefix}encoder.layer.{i}.layernorm_after.weight")
)
rename_keys.append((f"{prefix}blocks.{i}.norm2.bias", f"{hf_prefix}encoder.layer.{i}.layernorm_after.bias"))
rename_keys.append(
(f"{prefix}blocks.{i}.mlp.fc1.weight", f"{hf_prefix}encoder.layer.{i}.intermediate.dense.weight")
)
rename_keys.append(
(f"{prefix}blocks.{i}.mlp.fc1.bias", f"{hf_prefix}encoder.layer.{i}.intermediate.dense.bias")
)
rename_keys.append((f"{prefix}blocks.{i}.mlp.fc2.weight", f"{hf_prefix}encoder.layer.{i}.output.dense.weight"))
rename_keys.append((f"{prefix}blocks.{i}.mlp.fc2.bias", f"{hf_prefix}encoder.layer.{i}.output.dense.bias"))
# projection layer + position embeddings
rename_keys.extend(
[
(f"{prefix}cls_token", f"{hf_prefix}embeddings.cls_token"),
(f"{prefix}patch_embed.proj.weight", f"{hf_prefix}embeddings.patch_embeddings.projection.weight"),
(f"{prefix}patch_embed.proj.bias", f"{hf_prefix}embeddings.patch_embeddings.projection.bias"),
]
)
if has_lm_head:
# mask token + shared relative position bias + layernorm
rename_keys.extend(
[
("mask_token", f"{hf_prefix}embeddings.mask_token"),
(
"rel_pos_bias.relative_position_bias_table",
f"{hf_prefix}encoder.relative_position_bias.relative_position_bias_table",
),
(
"rel_pos_bias.relative_position_index",
f"{hf_prefix}encoder.relative_position_bias.relative_position_index",
),
("norm.weight", "layernorm.weight"),
("norm.bias", "layernorm.bias"),
]
)
elif is_semantic:
# semantic segmentation classification heads
rename_keys.extend(
[
("decode_head.conv_seg.weight", "decode_head.classifier.weight"),
("decode_head.conv_seg.bias", "decode_head.classifier.bias"),
("auxiliary_head.conv_seg.weight", "auxiliary_head.classifier.weight"),
("auxiliary_head.conv_seg.bias", "auxiliary_head.classifier.bias"),
]
)
else:
# layernorm + classification head
rename_keys.extend(
[
("fc_norm.weight", f"{hf_prefix}pooler.layernorm.weight"),
("fc_norm.bias", f"{hf_prefix}pooler.layernorm.bias"),
("head.weight", "classifier.weight"),
("head.bias", "classifier.bias"),
]
)
return rename_keys | null |
10,865 | import argparse
import json
import torch
from PIL import Image
from huggingface_hub import hf_hub_download
from timm.models import create_model
from transformers import (
BeitFeatureExtractor,
Data2VecVisionConfig,
Data2VecVisionForImageClassification,
Data2VecVisionModel,
)
def read_in_q_k_v(state_dict, config, has_lm_head=False, is_semantic=False, hf_prefix="data2vec_vision."):
for i in range(config.num_hidden_layers):
prefix = "backbone." if is_semantic else ""
# queries, keys and values
in_proj_weight = state_dict.pop(f"{prefix}blocks.{i}.attn.qkv.weight")
q_bias = state_dict.pop(f"{prefix}blocks.{i}.attn.q_bias")
v_bias = state_dict.pop(f"{prefix}blocks.{i}.attn.v_bias")
state_dict[f"{hf_prefix}encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[
: config.hidden_size, :
]
state_dict[f"{hf_prefix}encoder.layer.{i}.attention.attention.query.bias"] = q_bias
state_dict[f"{hf_prefix}encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"{hf_prefix}encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"{hf_prefix}encoder.layer.{i}.attention.attention.value.bias"] = v_bias
# gamma_1 and gamma_2
# we call them lambda because otherwise they are renamed when using .from_pretrained
gamma_1 = state_dict.pop(f"{prefix}blocks.{i}.gamma_1")
gamma_2 = state_dict.pop(f"{prefix}blocks.{i}.gamma_2")
state_dict[f"{hf_prefix}encoder.layer.{i}.lambda_1"] = gamma_1
state_dict[f"{hf_prefix}encoder.layer.{i}.lambda_2"] = gamma_2
# relative_position bias table + index
if not has_lm_head:
# each layer has its own relative position bias
table = state_dict.pop(f"{prefix}blocks.{i}.attn.relative_position_bias_table")
index = state_dict.pop(f"{prefix}blocks.{i}.attn.relative_position_index")
state_dict[
f"{hf_prefix}encoder.layer.{i}.attention.attention.relative_position_bias.relative_position_bias_table"
] = table
state_dict[
f"{hf_prefix}encoder.layer.{i}.attention.attention.relative_position_bias.relative_position_index"
] = index | null |
10,866 | import argparse
import json
import torch
from PIL import Image
from huggingface_hub import hf_hub_download
from timm.models import create_model
from transformers import (
BeitFeatureExtractor,
Data2VecVisionConfig,
Data2VecVisionForImageClassification,
Data2VecVisionModel,
)
def get_args():
parser = argparse.ArgumentParser(
"Convert Data2VecVision to HF for image classification and pretraining", add_help=False
)
parser.add_argument("--hf_checkpoint_name", type=str)
parser.add_argument("--input_size", default=224, type=int, help="images input size")
parser.add_argument("--beit_checkpoint", default="", help="beit checkpoint")
return parser.parse_args() | null |
10,867 | import argparse
import json
import torch
from PIL import Image
from huggingface_hub import hf_hub_download
from timm.models import create_model
from transformers import (
BeitFeatureExtractor,
Data2VecVisionConfig,
Data2VecVisionForImageClassification,
Data2VecVisionModel,
)
def load_beit_model(args, is_finetuned, is_large):
def load_state_dict(model, state_dict, prefix="", ignore_missing="relative_position_index"):
missing_keys = []
unexpected_keys = []
error_msgs = []
# copy state_dict so _load_from_state_dict can modify it
metadata = getattr(state_dict, "_metadata", None)
state_dict = state_dict.copy()
if metadata is not None:
state_dict._metadata = metadata
def load(module, prefix=""):
local_metadata = {} if metadata is None else metadata.get(prefix[:-1], {})
module._load_from_state_dict(
state_dict, prefix, local_metadata, True, missing_keys, unexpected_keys, error_msgs
)
for name, child in module._modules.items():
if child is not None:
load(child, prefix + name + ".")
load(model, prefix=prefix)
warn_missing_keys = []
ignore_missing_keys = []
for key in missing_keys:
keep_flag = True
for ignore_key in ignore_missing.split("|"):
if ignore_key in key:
keep_flag = False
break
if keep_flag:
warn_missing_keys.append(key)
else:
ignore_missing_keys.append(key)
missing_keys = warn_missing_keys
if len(missing_keys) > 0:
print(
"Weights of {} not initialized from pretrained model: {}".format(
model.__class__.__name__, missing_keys
)
)
if len(unexpected_keys) > 0:
print("Weights from pretrained model not used in {}: {}".format(model.__class__.__name__, unexpected_keys))
if len(ignore_missing_keys) > 0:
print(
"Ignored weights of {} not initialized from pretrained model: {}".format(
model.__class__.__name__, ignore_missing_keys
)
)
if len(error_msgs) > 0:
print("\n".join(error_msgs))
model_kwargs = {
"pretrained": False,
"use_shared_rel_pos_bias": True,
"use_abs_pos_emb": False,
"init_values": 0.1,
}
if is_finetuned:
model_kwargs.update(
{
"num_classes": 1000,
"use_mean_pooling": True,
"init_scale": 0.001,
"use_rel_pos_bias": True,
}
)
model = create_model(
"beit_large_patch16_224" if is_large else "beit_base_patch16_224",
**model_kwargs,
)
patch_size = model.patch_embed.patch_size
args.window_size = (args.input_size // patch_size[0], args.input_size // patch_size[1])
checkpoint = torch.load(args.beit_checkpoint, map_location="cpu")
print(f"Load ckpt from {args.beit_checkpoint}")
checkpoint_model = None
for model_key in ("model", "module"):
if model_key in checkpoint:
checkpoint_model = checkpoint[model_key]
print(f"Load state_dict by model_key = {model_key}")
break
all_keys = list(checkpoint_model.keys())
for key in all_keys:
if "relative_position_index" in key:
checkpoint_model.pop(key)
if "relative_position_bias_table" in key:
rel_pos_bias = checkpoint_model[key]
src_num_pos, num_attn_heads = rel_pos_bias.size()
dst_num_pos, _ = model.state_dict()[key].size()
dst_patch_shape = model.patch_embed.patch_shape
if dst_patch_shape[0] != dst_patch_shape[1]:
raise NotImplementedError()
load_state_dict(model, checkpoint_model, prefix="")
return model | null |
10,868 | import math
from typing import Dict, Optional, Sequence, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMaskedLMOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
The provided code snippet includes necessary dependencies for implementing the `build_relative_position` function. Write a Python function `def build_relative_position(query_size, key_size)` to solve the following problem:
Build relative position according to the query and key We assume the absolute position of query \\(P_q\\) is range from (0, query_size) and the absolute position of key \\(P_k\\) is range from (0, key_size), The relative positions from query to key is \\(R_{q \\rightarrow k} = P_q - P_k\\) Args: query_size (int): the length of query key_size (int): the length of key Return: `tf.Tensor`: A tensor with shape [1, query_size, key_size]
Here is the function:
def build_relative_position(query_size, key_size):
"""
Build relative position according to the query and key
We assume the absolute position of query \\(P_q\\) is range from (0, query_size) and the absolute position of key
\\(P_k\\) is range from (0, key_size), The relative positions from query to key is \\(R_{q \\rightarrow k} = P_q -
P_k\\)
Args:
query_size (int): the length of query
key_size (int): the length of key
Return:
`tf.Tensor`: A tensor with shape [1, query_size, key_size]
"""
q_ids = tf.range(query_size, dtype=tf.int32)
k_ids = tf.range(key_size, dtype=tf.int32)
rel_pos_ids = q_ids[:, None] - tf.tile(tf.reshape(k_ids, [1, -1]), [query_size, 1])
rel_pos_ids = rel_pos_ids[:query_size, :]
rel_pos_ids = tf.expand_dims(rel_pos_ids, axis=0)
return tf.cast(rel_pos_ids, tf.int64) | Build relative position according to the query and key We assume the absolute position of query \\(P_q\\) is range from (0, query_size) and the absolute position of key \\(P_k\\) is range from (0, key_size), The relative positions from query to key is \\(R_{q \\rightarrow k} = P_q - P_k\\) Args: query_size (int): the length of query key_size (int): the length of key Return: `tf.Tensor`: A tensor with shape [1, query_size, key_size] |
10,869 | import math
from typing import Dict, Optional, Sequence, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMaskedLMOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
def c2p_dynamic_expand(c2p_pos, query_layer, relative_pos):
shapes = [
shape_list(query_layer)[0],
shape_list(query_layer)[1],
shape_list(query_layer)[2],
shape_list(relative_pos)[-1],
]
return tf.broadcast_to(c2p_pos, shapes) | null |
10,870 | import math
from typing import Dict, Optional, Sequence, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMaskedLMOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
def p2c_dynamic_expand(c2p_pos, query_layer, key_layer):
shapes = [
shape_list(query_layer)[0],
shape_list(query_layer)[1],
shape_list(key_layer)[-2],
shape_list(key_layer)[-2],
]
return tf.broadcast_to(c2p_pos, shapes) | null |
10,871 | import math
from typing import Dict, Optional, Sequence, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMaskedLMOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
def pos_dynamic_expand(pos_index, p2c_att, key_layer):
shapes = shape_list(p2c_att)[:2] + [shape_list(pos_index)[-2], shape_list(key_layer)[-2]]
return tf.broadcast_to(pos_index, shapes) | null |
10,872 | import math
from typing import Dict, Optional, Sequence, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMaskedLMOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
def torch_gather(x, indices, gather_axis):
if gather_axis < 0:
gather_axis = tf.rank(x) + gather_axis
if gather_axis != tf.rank(x) - 1:
pre_roll = tf.rank(x) - 1 - gather_axis
permutation = tf.roll(tf.range(tf.rank(x)), pre_roll, axis=0)
x = tf.transpose(x, perm=permutation)
indices = tf.transpose(indices, perm=permutation)
else:
pre_roll = 0
flat_x = tf.reshape(x, (-1, tf.shape(x)[-1]))
flat_indices = tf.reshape(indices, (-1, tf.shape(indices)[-1]))
gathered = tf.gather(flat_x, flat_indices, batch_dims=1)
gathered = tf.reshape(gathered, tf.shape(indices))
if pre_roll != 0:
permutation = tf.roll(tf.range(tf.rank(x)), -pre_roll, axis=0)
gathered = tf.transpose(gathered, perm=permutation)
return gathered | null |
10,873 | import json
import os
from typing import TYPE_CHECKING, List, Optional, Tuple
import regex as re
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `bytes_to_unicode` function. Write a Python function `def bytes_to_unicode()` to solve the following problem:
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings.
Here is the function:
def bytes_to_unicode():
"""
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control
characters the bpe code barfs on.
The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab
if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for
decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup
tables between utf-8 bytes and unicode strings.
"""
bs = (
list(range(ord("!"), ord("~") + 1)) + list(range(ord("¡"), ord("¬") + 1)) + list(range(ord("®"), ord("ÿ") + 1))
)
cs = bs[:]
n = 0
for b in range(2**8):
if b not in bs:
bs.append(b)
cs.append(2**8 + n)
n += 1
cs = [chr(n) for n in cs]
return dict(zip(bs, cs)) | Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings. |
10,874 | import json
import os
from typing import TYPE_CHECKING, List, Optional, Tuple
import regex as re
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `get_pairs` function. Write a Python function `def get_pairs(word)` to solve the following problem:
Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings).
Here is the function:
def get_pairs(word):
"""
Return set of symbol pairs in a word.
Word is represented as tuple of symbols (symbols being variable-length strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs | Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings). |
10,875 | from collections.abc import Sequence
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
MaskedLMOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import softmax_backward_data
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
class DropoutContext(object):
def __init__(self):
def get_mask(input, local_context):
if not isinstance(local_context, DropoutContext):
dropout = local_context
mask = None
else:
dropout = local_context.dropout
dropout *= local_context.scale
mask = local_context.mask if local_context.reuse_mask else None
if dropout > 0 and mask is None:
mask = (1 - torch.empty_like(input).bernoulli_(1 - dropout)).to(torch.bool)
if isinstance(local_context, DropoutContext):
if local_context.mask is None:
local_context.mask = mask
return mask, dropout | null |
10,876 | from collections.abc import Sequence
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
MaskedLMOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import softmax_backward_data
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
The provided code snippet includes necessary dependencies for implementing the `build_relative_position` function. Write a Python function `def build_relative_position(query_size, key_size, device)` to solve the following problem:
Build relative position according to the query and key We assume the absolute position of query \\(P_q\\) is range from (0, query_size) and the absolute position of key \\(P_k\\) is range from (0, key_size), The relative positions from query to key is \\(R_{q \\rightarrow k} = P_q - P_k\\) Args: query_size (int): the length of query key_size (int): the length of key Return: `torch.LongTensor`: A tensor with shape [1, query_size, key_size]
Here is the function:
def build_relative_position(query_size, key_size, device):
"""
Build relative position according to the query and key
We assume the absolute position of query \\(P_q\\) is range from (0, query_size) and the absolute position of key
\\(P_k\\) is range from (0, key_size), The relative positions from query to key is \\(R_{q \\rightarrow k} = P_q -
P_k\\)
Args:
query_size (int): the length of query
key_size (int): the length of key
Return:
`torch.LongTensor`: A tensor with shape [1, query_size, key_size]
"""
q_ids = torch.arange(query_size, dtype=torch.long, device=device)
k_ids = torch.arange(key_size, dtype=torch.long, device=device)
rel_pos_ids = q_ids[:, None] - k_ids.view(1, -1).repeat(query_size, 1)
rel_pos_ids = rel_pos_ids[:query_size, :]
rel_pos_ids = rel_pos_ids.unsqueeze(0)
return rel_pos_ids | Build relative position according to the query and key We assume the absolute position of query \\(P_q\\) is range from (0, query_size) and the absolute position of key \\(P_k\\) is range from (0, key_size), The relative positions from query to key is \\(R_{q \\rightarrow k} = P_q - P_k\\) Args: query_size (int): the length of query key_size (int): the length of key Return: `torch.LongTensor`: A tensor with shape [1, query_size, key_size] |
10,877 | from collections.abc import Sequence
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
MaskedLMOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import softmax_backward_data
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
def c2p_dynamic_expand(c2p_pos, query_layer, relative_pos):
return c2p_pos.expand([query_layer.size(0), query_layer.size(1), query_layer.size(2), relative_pos.size(-1)]) | null |
10,878 | from collections.abc import Sequence
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
MaskedLMOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import softmax_backward_data
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
def p2c_dynamic_expand(c2p_pos, query_layer, key_layer):
return c2p_pos.expand([query_layer.size(0), query_layer.size(1), key_layer.size(-2), key_layer.size(-2)]) | null |
10,879 | from collections.abc import Sequence
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
MaskedLMOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import softmax_backward_data
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_deberta import DebertaConfig
def pos_dynamic_expand(pos_index, p2c_att, key_layer):
return pos_index.expand(p2c_att.size()[:2] + (pos_index.size(-2), key_layer.size(-2))) | null |
10,880 | import math
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithPastAndCrossAttentions, CausalLMOutputWithCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_bert_generation import BertGenerationConfig
logger = logging.get_logger(__name__)
def load_tf_weights_in_bert_generation(
model, tf_hub_path, model_class, is_encoder_named_decoder=False, is_encoder=False
):
try:
import numpy as np
import tensorflow.compat.v1 as tf
import tensorflow_hub as hub
import tensorflow_text # noqa: F401
tf.disable_eager_execution()
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_model = hub.Module(tf_hub_path)
init = tf.global_variables_initializer()
with tf.Session() as sess:
init.run()
all_variables = tf_model.variable_map
keep_track_variables = all_variables.copy()
for key in list(all_variables.keys()):
if "global" in key:
logger.info(f"Skipping {key}...")
continue
if not is_encoder:
model_pointer = getattr(model, model_class)
else:
model_pointer = model
is_embedding = False
logger.info(f"Trying to match {key}...")
# remove start_string = "module/bert/"
sub_layers = key.split("/")[2:]
if is_encoder_named_decoder and sub_layers[0] == "encoder":
logger.info(f"Skipping encoder layer {key} for decoder")
continue
if is_encoder and sub_layers[0] == "decoder":
logger.info(f"Skipping decoder layer {key} for encoder")
continue
for i, sub_layer in enumerate(sub_layers):
if sub_layer == "embeddings":
is_embedding = True
elif sub_layer == "LayerNorm":
is_embedding = False
if "layer" in sub_layer:
model_pointer = model_pointer.layer[int(sub_layer.split("_")[-1])]
elif sub_layer in ["kernel", "gamma"]:
model_pointer = model_pointer.weight
elif sub_layer == "beta":
model_pointer = model_pointer.bias
elif sub_layer == "encdec":
model_pointer = model_pointer.crossattention.self
elif sub_layer == "encdec_output":
model_pointer = model_pointer.crossattention.output
elif is_encoder_named_decoder and sub_layer == "decoder":
model_pointer = model_pointer.encoder
else:
if sub_layer == "attention" and "encdec" in sub_layers[i + 1]:
continue
try:
model_pointer = getattr(model_pointer, sub_layer)
except AttributeError:
logger.info(f"Skipping to initialize {key} at {sub_layer}...")
raise AttributeError
array = np.asarray(sess.run(all_variables[key]))
if not is_embedding:
logger.info(f"Transposing numpy weight of shape {array.shape} for {key}")
array = np.transpose(array)
else:
model_pointer = model_pointer.weight
if model_pointer.shape != array.shape:
raise ValueError(f"Pointer shape {model_pointer.shape} and array shape {array.shape} mismatched")
logger.info(f"Initialize PyTorch weight {key}")
model_pointer.data = torch.from_numpy(array.astype(np.float32))
keep_track_variables.pop(key, None)
logger.info(f"Weights not copied to PyTorch model: {', '.join(keep_track_variables.keys())}")
return model | null |
10,881 | from dataclasses import dataclass
from typing import Any, Dict, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithPooling
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_owlvit import OwlViTConfig, OwlViTTextConfig, OwlViTVisionConfig
The provided code snippet includes necessary dependencies for implementing the `_expand_mask` function. Write a Python function `def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None)` to solve the following problem:
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
Here is the function:
def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
bsz, src_len = mask.size()
tgt_len = tgt_len if tgt_len is not None else src_len
expanded_mask = mask[:, None, None, :].expand(bsz, 1, tgt_len, src_len).to(dtype)
inverted_mask = 1.0 - expanded_mask
return inverted_mask.masked_fill(inverted_mask.to(torch.bool), torch.finfo(dtype).min) | Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`. |
10,882 | from dataclasses import dataclass
from typing import Any, Dict, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithPooling
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_owlvit import OwlViTConfig, OwlViTTextConfig, OwlViTVisionConfig
def contrastive_loss(logits: torch.Tensor) -> torch.Tensor:
return nn.functional.cross_entropy(logits, torch.arange(len(logits), device=logits.device))
def owlvit_loss(similarity: torch.Tensor) -> torch.Tensor:
caption_loss = contrastive_loss(similarity)
image_loss = contrastive_loss(similarity.t())
return (caption_loss + image_loss) / 2.0 | null |
10,883 | from typing import List, Optional, Union
import numpy as np
from PIL import Image
from transformers.image_utils import PILImageResampling
from ...feature_extraction_utils import BatchFeature, FeatureExtractionMixin
from ...image_utils import ImageFeatureExtractionMixin, is_torch_tensor
from ...utils import TensorType, is_torch_available, logging
The provided code snippet includes necessary dependencies for implementing the `center_to_corners_format` function. Write a Python function `def center_to_corners_format(x)` to solve the following problem:
Converts a PyTorch tensor of bounding boxes of center format (center_x, center_y, width, height) to corners format (left, top, right, bottom).
Here is the function:
def center_to_corners_format(x):
"""
Converts a PyTorch tensor of bounding boxes of center format (center_x, center_y, width, height) to corners format
(left, top, right, bottom).
"""
x_center, y_center, width, height = x.unbind(-1)
boxes = [(x_center - 0.5 * width), (y_center - 0.5 * height), (x_center + 0.5 * width), (y_center + 0.5 * height)]
return torch.stack(boxes, dim=-1) | Converts a PyTorch tensor of bounding boxes of center format (center_x, center_y, width, height) to corners format (left, top, right, bottom). |
10,884 | import argparse
import collections
import torch
import torch.nn as nn
import jax
import jax.numpy as jnp
from clip.model import CLIP
from flax.training import checkpoints
from huggingface_hub import Repository
from transformers import (
CLIPTokenizer,
OwlViTConfig,
OwlViTFeatureExtractor,
OwlViTForObjectDetection,
OwlViTModel,
OwlViTProcessor,
)
def to_f32(params):
return jax.tree_util.tree_map(lambda x: x.astype(jnp.float32) if x.dtype == jnp.bfloat16 else x, params) | null |
10,885 | import argparse
import collections
import torch
import torch.nn as nn
import jax
import jax.numpy as jnp
from clip.model import CLIP
from flax.training import checkpoints
from huggingface_hub import Repository
from transformers import (
CLIPTokenizer,
OwlViTConfig,
OwlViTFeatureExtractor,
OwlViTForObjectDetection,
OwlViTModel,
OwlViTProcessor,
)
def flatten_nested_dict(params, parent_key="", sep="/"):
items = []
for k, v in params.items():
new_key = parent_key + sep + k if parent_key else k
if isinstance(v, collections.MutableMapping):
items.extend(flatten_nested_dict(v, new_key, sep=sep).items())
else:
items.append((new_key, v))
return dict(items)
def _convert_attn_layers(params):
new_params = {}
processed_attn_layers = []
for k, v in params.items():
if "attn." in k:
base = k[: k.rindex("attn.") + 5]
if base in processed_attn_layers:
continue
processed_attn_layers.append(base)
dim = params[base + "out.weight"].shape[-1]
new_params[base + "out_proj.weight"] = params[base + "out.weight"].reshape(dim, dim).T
new_params[base + "out_proj.bias"] = params[base + "out.bias"]
else:
new_params[k] = v
return new_params
def convert_clip_backbone(flax_params, torch_config):
torch_model = CLIP(**torch_config)
torch_model.eval()
torch_clip_params = torch_model.state_dict()
flax_clip_params = flatten_nested_dict(flax_params["backbone"]["clip"])
new_torch_params = {}
for flax_key, v in flax_clip_params.items():
torch_key = flax_key.replace("/", ".")
torch_key = torch_key.replace("text.token_embedding.embedding", "token_embedding.kernel")
if (
torch_key.startswith("text.transformer")
or torch_key.startswith("text.text_projection")
or torch_key.startswith("text.ln_final")
or torch_key.startswith("text.positional_embedding")
):
torch_key = torch_key[5:]
torch_key = torch_key.replace("text_projection.kernel", "text_projection")
torch_key = torch_key.replace("visual.proj.kernel", "visual.proj")
torch_key = torch_key.replace(".scale", ".weight")
torch_key = torch_key.replace(".kernel", ".weight")
if "conv" in torch_key or "downsample.0.weight" in torch_key:
v = v.transpose(3, 2, 0, 1)
elif "weight" in torch_key and v.ndim == 2 and "embedding" not in torch_key:
# Fully connected layers are transposed, embeddings are not
v = v.T
new_torch_params[torch_key] = v
attn_params = _convert_attn_layers(new_torch_params)
new_torch_params.update(attn_params)
attn_params = {}
# Copy flax CLIP backbone params to PyTorch params
for name, param in new_torch_params.items():
if name in torch_clip_params.keys():
new_param = torch.from_numpy(new_torch_params[name])
torch_clip_params[name].copy_(new_param)
else:
attn_params[name] = param
return torch_clip_params, torch_model, attn_params | null |
10,886 | import argparse
import collections
import torch
import torch.nn as nn
import jax
import jax.numpy as jnp
from clip.model import CLIP
from flax.training import checkpoints
from huggingface_hub import Repository
from transformers import (
CLIPTokenizer,
OwlViTConfig,
OwlViTFeatureExtractor,
OwlViTForObjectDetection,
OwlViTModel,
OwlViTProcessor,
)
def copy_text_model_and_projection(hf_model, pt_model):
# copy projection
hf_model.text_projection.weight.data = pt_model.text_projection.data.T
# copy text encoder
copy_encoder(hf_model.text_model, pt_model)
def copy_vision_model_and_projection(hf_model, pt_model):
# copy projection
hf_model.visual_projection.weight.data = pt_model.visual.proj.data.T
# copy layer norms
copy_linear(hf_model.vision_model.pre_layernorm, pt_model.visual.ln_pre)
copy_linear(hf_model.vision_model.post_layernorm, pt_model.visual.ln_post)
# copy embeds
hf_model.vision_model.embeddings.patch_embedding.weight.data = pt_model.visual.conv1.weight.data
hf_model.vision_model.embeddings.class_embedding = pt_model.visual.class_embedding
hf_model.vision_model.embeddings.position_embedding.weight.data = pt_model.visual.positional_embedding.data
# copy encoder
copy_layers(hf_model.vision_model.encoder.layers, pt_model.visual.transformer.resblocks)
def copy_class_merge_token(hf_model, flax_params):
flax_class_token_params = flatten_nested_dict(flax_params["backbone"]["merged_class_token"])
weight = torch.from_numpy(flax_class_token_params["scale"])
bias = torch.from_numpy(flax_class_token_params["bias"])
hf_model.layer_norm.weight = nn.Parameter(weight)
hf_model.layer_norm.bias = nn.Parameter(bias)
def copy_class_box_heads(hf_model, flax_params):
pt_params = hf_model.state_dict()
new_params = {}
# Rename class prediction head flax params to pytorch HF
flax_class_params = flatten_nested_dict(flax_params["class_head"])
for flax_key, v in flax_class_params.items():
torch_key = flax_key.replace("/", ".")
torch_key = torch_key.replace(".kernel", ".weight")
torch_key = torch_key.replace("Dense_0", "dense0")
torch_key = "class_head." + torch_key
if "weight" in torch_key and v.ndim == 2:
v = v.T
new_params[torch_key] = nn.Parameter(torch.from_numpy(v))
# Rename box prediction box flax params to pytorch HF
flax_box_params = flatten_nested_dict(flax_params["obj_box_head"])
for flax_key, v in flax_box_params.items():
torch_key = flax_key.replace("/", ".")
torch_key = torch_key.replace(".kernel", ".weight")
torch_key = torch_key.replace("_", "").lower()
torch_key = "box_head." + torch_key
if "weight" in torch_key and v.ndim == 2:
v = v.T
new_params[torch_key] = nn.Parameter(torch.from_numpy(v))
# Copy flax params to PyTorch params
for name, param in new_params.items():
if name in pt_params.keys():
pt_params[name].copy_(param)
def copy_flax_attn_params(hf_backbone, flax_attn_params):
for k, v in flax_attn_params.items():
if k.startswith("transformer"):
torch_key = k.replace("transformer.resblocks", "text_model.encoder.layers")
else:
torch_key = k.replace("visual.transformer.resblocks", "vision_model.encoder.layers")
torch_key = torch_key.replace("attn", "self_attn")
torch_key = torch_key.replace("key", "k_proj")
torch_key = torch_key.replace("value", "v_proj")
torch_key = torch_key.replace("query", "q_proj")
torch_key = torch_key.replace("out", "out_proj")
if "bias" in torch_key and v.ndim == 2:
shape = v.shape[0] * v.shape[1]
v = v.reshape(shape)
if "weight" in torch_key and "out" in torch_key:
shape = (v.shape[0] * v.shape[1], v.shape[2])
v = v.reshape(shape).T
if "weight" in torch_key and "out" not in torch_key:
shape = (v.shape[0], v.shape[1] * v.shape[2])
v = v.reshape(shape).T
# Copy flax CLIP attn params to HF PyTorch params
v = torch.from_numpy(v)
hf_backbone.state_dict()[torch_key].copy_(v)
The provided code snippet includes necessary dependencies for implementing the `convert_owlvit_checkpoint` function. Write a Python function `def convert_owlvit_checkpoint(pt_backbone, flax_params, attn_params, pytorch_dump_folder_path, config_path=None)` to solve the following problem:
Copy/paste/tweak model's weights to transformers design.
Here is the function:
def convert_owlvit_checkpoint(pt_backbone, flax_params, attn_params, pytorch_dump_folder_path, config_path=None):
"""
Copy/paste/tweak model's weights to transformers design.
"""
repo = Repository(pytorch_dump_folder_path, clone_from=f"google/{pytorch_dump_folder_path}")
repo.git_pull()
if config_path is not None:
config = OwlViTConfig.from_pretrained(config_path)
else:
config = OwlViTConfig()
hf_backbone = OwlViTModel(config).eval()
hf_model = OwlViTForObjectDetection(config).eval()
copy_text_model_and_projection(hf_backbone, pt_backbone)
copy_vision_model_and_projection(hf_backbone, pt_backbone)
hf_backbone.logit_scale = pt_backbone.logit_scale
copy_flax_attn_params(hf_backbone, attn_params)
hf_model.owlvit = hf_backbone
copy_class_merge_token(hf_model, flax_params)
copy_class_box_heads(hf_model, flax_params)
# Save HF model
hf_model.save_pretrained(repo.local_dir)
# Initialize feature extractor
feature_extractor = OwlViTFeatureExtractor(
size=config.vision_config.image_size, crop_size=config.vision_config.image_size
)
# Initialize tokenizer
tokenizer = CLIPTokenizer.from_pretrained("openai/clip-vit-base-patch32", pad_token="!", model_max_length=16)
# Initialize processor
processor = OwlViTProcessor(feature_extractor=feature_extractor, tokenizer=tokenizer)
feature_extractor.save_pretrained(repo.local_dir)
processor.save_pretrained(repo.local_dir)
repo.git_add()
repo.git_commit("Upload model and processor")
repo.git_push() | Copy/paste/tweak model's weights to transformers design. |
10,887 | import argparse
import json
from pathlib import Path
import torch
from PIL import Image
import requests
import timm
from huggingface_hub import hf_hub_download
from transformers import DeiTConfig, DeiTFeatureExtractor, DeiTForImageClassificationWithTeacher
from transformers.utils import logging
def create_rename_keys(config, base_model=False):
rename_keys = []
for i in range(config.num_hidden_layers):
# encoder layers: output projection, 2 feedforward neural networks and 2 layernorms
rename_keys.append((f"blocks.{i}.norm1.weight", f"deit.encoder.layer.{i}.layernorm_before.weight"))
rename_keys.append((f"blocks.{i}.norm1.bias", f"deit.encoder.layer.{i}.layernorm_before.bias"))
rename_keys.append((f"blocks.{i}.attn.proj.weight", f"deit.encoder.layer.{i}.attention.output.dense.weight"))
rename_keys.append((f"blocks.{i}.attn.proj.bias", f"deit.encoder.layer.{i}.attention.output.dense.bias"))
rename_keys.append((f"blocks.{i}.norm2.weight", f"deit.encoder.layer.{i}.layernorm_after.weight"))
rename_keys.append((f"blocks.{i}.norm2.bias", f"deit.encoder.layer.{i}.layernorm_after.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc1.weight", f"deit.encoder.layer.{i}.intermediate.dense.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc1.bias", f"deit.encoder.layer.{i}.intermediate.dense.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc2.weight", f"deit.encoder.layer.{i}.output.dense.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc2.bias", f"deit.encoder.layer.{i}.output.dense.bias"))
# projection layer + position embeddings
rename_keys.extend(
[
("cls_token", "deit.embeddings.cls_token"),
("dist_token", "deit.embeddings.distillation_token"),
("patch_embed.proj.weight", "deit.embeddings.patch_embeddings.projection.weight"),
("patch_embed.proj.bias", "deit.embeddings.patch_embeddings.projection.bias"),
("pos_embed", "deit.embeddings.position_embeddings"),
]
)
if base_model:
# layernorm + pooler
rename_keys.extend(
[
("norm.weight", "layernorm.weight"),
("norm.bias", "layernorm.bias"),
("pre_logits.fc.weight", "pooler.dense.weight"),
("pre_logits.fc.bias", "pooler.dense.bias"),
]
)
# if just the base model, we should remove "deit" from all keys that start with "deit"
rename_keys = [(pair[0], pair[1][4:]) if pair[1].startswith("deit") else pair for pair in rename_keys]
else:
# layernorm + classification heads
rename_keys.extend(
[
("norm.weight", "deit.layernorm.weight"),
("norm.bias", "deit.layernorm.bias"),
("head.weight", "cls_classifier.weight"),
("head.bias", "cls_classifier.bias"),
("head_dist.weight", "distillation_classifier.weight"),
("head_dist.bias", "distillation_classifier.bias"),
]
)
return rename_keys
def read_in_q_k_v(state_dict, config, base_model=False):
for i in range(config.num_hidden_layers):
if base_model:
prefix = ""
else:
prefix = "deit."
# read in weights + bias of input projection layer (in timm, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"blocks.{i}.attn.qkv.weight")
in_proj_bias = state_dict.pop(f"blocks.{i}.attn.qkv.bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[
: config.hidden_size, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.bias"] = in_proj_bias[: config.hidden_size]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.bias"] = in_proj_bias[
config.hidden_size : config.hidden_size * 2
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.bias"] = in_proj_bias[-config.hidden_size :]
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
The provided code snippet includes necessary dependencies for implementing the `convert_deit_checkpoint` function. Write a Python function `def convert_deit_checkpoint(deit_name, pytorch_dump_folder_path)` to solve the following problem:
Copy/paste/tweak model's weights to our DeiT structure.
Here is the function:
def convert_deit_checkpoint(deit_name, pytorch_dump_folder_path):
"""
Copy/paste/tweak model's weights to our DeiT structure.
"""
# define default DeiT configuration
config = DeiTConfig()
# all deit models have fine-tuned heads
base_model = False
# dataset (fine-tuned on ImageNet 2012), patch_size and image_size
config.num_labels = 1000
repo_id = "huggingface/label-files"
filename = "imagenet-1k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
config.patch_size = int(deit_name[-6:-4])
config.image_size = int(deit_name[-3:])
# size of the architecture
if deit_name[9:].startswith("tiny"):
config.hidden_size = 192
config.intermediate_size = 768
config.num_hidden_layers = 12
config.num_attention_heads = 3
elif deit_name[9:].startswith("small"):
config.hidden_size = 384
config.intermediate_size = 1536
config.num_hidden_layers = 12
config.num_attention_heads = 6
if deit_name[9:].startswith("base"):
pass
elif deit_name[4:].startswith("large"):
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
# load original model from timm
timm_model = timm.create_model(deit_name, pretrained=True)
timm_model.eval()
# load state_dict of original model, remove and rename some keys
state_dict = timm_model.state_dict()
rename_keys = create_rename_keys(config, base_model)
for src, dest in rename_keys:
rename_key(state_dict, src, dest)
read_in_q_k_v(state_dict, config, base_model)
# load HuggingFace model
model = DeiTForImageClassificationWithTeacher(config).eval()
model.load_state_dict(state_dict)
# Check outputs on an image, prepared by DeiTFeatureExtractor
size = int(
(256 / 224) * config.image_size
) # to maintain same ratio w.r.t. 224 images, see https://github.com/facebookresearch/deit/blob/ab5715372db8c6cad5740714b2216d55aeae052e/datasets.py#L103
feature_extractor = DeiTFeatureExtractor(size=size, crop_size=config.image_size)
encoding = feature_extractor(images=prepare_img(), return_tensors="pt")
pixel_values = encoding["pixel_values"]
outputs = model(pixel_values)
timm_logits = timm_model(pixel_values)
assert timm_logits.shape == outputs.logits.shape
assert torch.allclose(timm_logits, outputs.logits, atol=1e-3)
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model {deit_name} to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving feature extractor to {pytorch_dump_folder_path}")
feature_extractor.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to our DeiT structure. |
10,888 | import argparse
import json
from pathlib import Path
import torch
from PIL import Image
import requests
import timm
from huggingface_hub import hf_hub_download
from transformers import DeiTFeatureExtractor, ViTConfig, ViTFeatureExtractor, ViTForImageClassification, ViTModel
from transformers.utils import logging
def create_rename_keys(config, base_model=False):
rename_keys = []
for i in range(config.num_hidden_layers):
# encoder layers: output projection, 2 feedforward neural networks and 2 layernorms
rename_keys.append((f"blocks.{i}.norm1.weight", f"vit.encoder.layer.{i}.layernorm_before.weight"))
rename_keys.append((f"blocks.{i}.norm1.bias", f"vit.encoder.layer.{i}.layernorm_before.bias"))
rename_keys.append((f"blocks.{i}.attn.proj.weight", f"vit.encoder.layer.{i}.attention.output.dense.weight"))
rename_keys.append((f"blocks.{i}.attn.proj.bias", f"vit.encoder.layer.{i}.attention.output.dense.bias"))
rename_keys.append((f"blocks.{i}.norm2.weight", f"vit.encoder.layer.{i}.layernorm_after.weight"))
rename_keys.append((f"blocks.{i}.norm2.bias", f"vit.encoder.layer.{i}.layernorm_after.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc1.weight", f"vit.encoder.layer.{i}.intermediate.dense.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc1.bias", f"vit.encoder.layer.{i}.intermediate.dense.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc2.weight", f"vit.encoder.layer.{i}.output.dense.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc2.bias", f"vit.encoder.layer.{i}.output.dense.bias"))
# projection layer + position embeddings
rename_keys.extend(
[
("cls_token", "vit.embeddings.cls_token"),
("patch_embed.proj.weight", "vit.embeddings.patch_embeddings.projection.weight"),
("patch_embed.proj.bias", "vit.embeddings.patch_embeddings.projection.bias"),
("pos_embed", "vit.embeddings.position_embeddings"),
]
)
if base_model:
# layernorm + pooler
rename_keys.extend(
[
("norm.weight", "layernorm.weight"),
("norm.bias", "layernorm.bias"),
("pre_logits.fc.weight", "pooler.dense.weight"),
("pre_logits.fc.bias", "pooler.dense.bias"),
]
)
# if just the base model, we should remove "vit" from all keys that start with "vit"
rename_keys = [(pair[0], pair[1][4:]) if pair[1].startswith("vit") else pair for pair in rename_keys]
else:
# layernorm + classification head
rename_keys.extend(
[
("norm.weight", "vit.layernorm.weight"),
("norm.bias", "vit.layernorm.bias"),
("head.weight", "classifier.weight"),
("head.bias", "classifier.bias"),
]
)
return rename_keys
def read_in_q_k_v(state_dict, config, base_model=False):
for i in range(config.num_hidden_layers):
if base_model:
prefix = ""
else:
prefix = "vit."
# read in weights + bias of input projection layer (in timm, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"blocks.{i}.attn.qkv.weight")
in_proj_bias = state_dict.pop(f"blocks.{i}.attn.qkv.bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[
: config.hidden_size, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.bias"] = in_proj_bias[: config.hidden_size]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.bias"] = in_proj_bias[
config.hidden_size : config.hidden_size * 2
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.bias"] = in_proj_bias[-config.hidden_size :]
def remove_classification_head_(state_dict):
ignore_keys = ["head.weight", "head.bias"]
for k in ignore_keys:
state_dict.pop(k, None)
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
The provided code snippet includes necessary dependencies for implementing the `convert_vit_checkpoint` function. Write a Python function `def convert_vit_checkpoint(vit_name, pytorch_dump_folder_path)` to solve the following problem:
Copy/paste/tweak model's weights to our ViT structure.
Here is the function:
def convert_vit_checkpoint(vit_name, pytorch_dump_folder_path):
"""
Copy/paste/tweak model's weights to our ViT structure.
"""
# define default ViT configuration
config = ViTConfig()
base_model = False
# dataset (ImageNet-21k only or also fine-tuned on ImageNet 2012), patch_size and image_size
if vit_name[-5:] == "in21k":
base_model = True
config.patch_size = int(vit_name[-12:-10])
config.image_size = int(vit_name[-9:-6])
else:
config.num_labels = 1000
repo_id = "huggingface/label-files"
filename = "imagenet-1k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
config.patch_size = int(vit_name[-6:-4])
config.image_size = int(vit_name[-3:])
# size of the architecture
if "deit" in vit_name:
if vit_name[9:].startswith("tiny"):
config.hidden_size = 192
config.intermediate_size = 768
config.num_hidden_layers = 12
config.num_attention_heads = 3
elif vit_name[9:].startswith("small"):
config.hidden_size = 384
config.intermediate_size = 1536
config.num_hidden_layers = 12
config.num_attention_heads = 6
else:
pass
else:
if vit_name[4:].startswith("small"):
config.hidden_size = 768
config.intermediate_size = 2304
config.num_hidden_layers = 8
config.num_attention_heads = 8
elif vit_name[4:].startswith("base"):
pass
elif vit_name[4:].startswith("large"):
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
elif vit_name[4:].startswith("huge"):
config.hidden_size = 1280
config.intermediate_size = 5120
config.num_hidden_layers = 32
config.num_attention_heads = 16
# load original model from timm
timm_model = timm.create_model(vit_name, pretrained=True)
timm_model.eval()
# load state_dict of original model, remove and rename some keys
state_dict = timm_model.state_dict()
if base_model:
remove_classification_head_(state_dict)
rename_keys = create_rename_keys(config, base_model)
for src, dest in rename_keys:
rename_key(state_dict, src, dest)
read_in_q_k_v(state_dict, config, base_model)
# load HuggingFace model
if vit_name[-5:] == "in21k":
model = ViTModel(config).eval()
else:
model = ViTForImageClassification(config).eval()
model.load_state_dict(state_dict)
# Check outputs on an image, prepared by ViTFeatureExtractor/DeiTFeatureExtractor
if "deit" in vit_name:
feature_extractor = DeiTFeatureExtractor(size=config.image_size)
else:
feature_extractor = ViTFeatureExtractor(size=config.image_size)
encoding = feature_extractor(images=prepare_img(), return_tensors="pt")
pixel_values = encoding["pixel_values"]
outputs = model(pixel_values)
if base_model:
timm_pooled_output = timm_model.forward_features(pixel_values)
assert timm_pooled_output.shape == outputs.pooler_output.shape
assert torch.allclose(timm_pooled_output, outputs.pooler_output, atol=1e-3)
else:
timm_logits = timm_model(pixel_values)
assert timm_logits.shape == outputs.logits.shape
assert torch.allclose(timm_logits, outputs.logits, atol=1e-3)
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model {vit_name} to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving feature extractor to {pytorch_dump_folder_path}")
feature_extractor.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to our ViT structure. |
10,889 | import argparse
import json
from pathlib import Path
import torch
from PIL import Image
import requests
from huggingface_hub import hf_hub_download
from transformers import ViTConfig, ViTFeatureExtractor, ViTForImageClassification, ViTModel
from transformers.utils import logging
def create_rename_keys(config, base_model=False):
rename_keys = []
for i in range(config.num_hidden_layers):
# encoder layers: output projection, 2 feedforward neural networks and 2 layernorms
rename_keys.append((f"blocks.{i}.norm1.weight", f"vit.encoder.layer.{i}.layernorm_before.weight"))
rename_keys.append((f"blocks.{i}.norm1.bias", f"vit.encoder.layer.{i}.layernorm_before.bias"))
rename_keys.append((f"blocks.{i}.attn.proj.weight", f"vit.encoder.layer.{i}.attention.output.dense.weight"))
rename_keys.append((f"blocks.{i}.attn.proj.bias", f"vit.encoder.layer.{i}.attention.output.dense.bias"))
rename_keys.append((f"blocks.{i}.norm2.weight", f"vit.encoder.layer.{i}.layernorm_after.weight"))
rename_keys.append((f"blocks.{i}.norm2.bias", f"vit.encoder.layer.{i}.layernorm_after.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc1.weight", f"vit.encoder.layer.{i}.intermediate.dense.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc1.bias", f"vit.encoder.layer.{i}.intermediate.dense.bias"))
rename_keys.append((f"blocks.{i}.mlp.fc2.weight", f"vit.encoder.layer.{i}.output.dense.weight"))
rename_keys.append((f"blocks.{i}.mlp.fc2.bias", f"vit.encoder.layer.{i}.output.dense.bias"))
# projection layer + position embeddings
rename_keys.extend(
[
("cls_token", "vit.embeddings.cls_token"),
("patch_embed.proj.weight", "vit.embeddings.patch_embeddings.projection.weight"),
("patch_embed.proj.bias", "vit.embeddings.patch_embeddings.projection.bias"),
("pos_embed", "vit.embeddings.position_embeddings"),
]
)
if base_model:
# layernorm + pooler
rename_keys.extend(
[
("norm.weight", "layernorm.weight"),
("norm.bias", "layernorm.bias"),
]
)
# if just the base model, we should remove "vit" from all keys that start with "vit"
rename_keys = [(pair[0], pair[1][4:]) if pair[1].startswith("vit") else pair for pair in rename_keys]
else:
# layernorm + classification head
rename_keys.extend(
[
("norm.weight", "vit.layernorm.weight"),
("norm.bias", "vit.layernorm.bias"),
("head.weight", "classifier.weight"),
("head.bias", "classifier.bias"),
]
)
return rename_keys
def read_in_q_k_v(state_dict, config, base_model=False):
for i in range(config.num_hidden_layers):
if base_model:
prefix = ""
else:
prefix = "vit."
# read in weights + bias of input projection layer (in timm, this is a single matrix + bias)
in_proj_weight = state_dict.pop(f"blocks.{i}.attn.qkv.weight")
in_proj_bias = state_dict.pop(f"blocks.{i}.attn.qkv.bias")
# next, add query, keys and values (in that order) to the state dict
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[
: config.hidden_size, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.query.bias"] = in_proj_bias[: config.hidden_size]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.key.bias"] = in_proj_bias[
config.hidden_size : config.hidden_size * 2
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"{prefix}encoder.layer.{i}.attention.attention.value.bias"] = in_proj_bias[-config.hidden_size :]
def remove_classification_head_(state_dict):
ignore_keys = ["head.weight", "head.bias"]
for k in ignore_keys:
state_dict.pop(k, None)
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
The provided code snippet includes necessary dependencies for implementing the `convert_vit_checkpoint` function. Write a Python function `def convert_vit_checkpoint(model_name, pytorch_dump_folder_path, base_model=True)` to solve the following problem:
Copy/paste/tweak model's weights to our ViT structure.
Here is the function:
def convert_vit_checkpoint(model_name, pytorch_dump_folder_path, base_model=True):
"""
Copy/paste/tweak model's weights to our ViT structure.
"""
# define default ViT configuration
config = ViTConfig()
# patch_size
if model_name[-1] == "8":
config.patch_size = 8
# set labels if required
if not base_model:
config.num_labels = 1000
repo_id = "huggingface/label-files"
filename = "imagenet-1k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
# size of the architecture
if model_name in ["dino_vits8", "dino_vits16"]:
config.hidden_size = 384
config.intermediate_size = 1536
config.num_hidden_layers = 12
config.num_attention_heads = 6
# load original model from torch hub
original_model = torch.hub.load("facebookresearch/dino:main", model_name)
original_model.eval()
# load state_dict of original model, remove and rename some keys
state_dict = original_model.state_dict()
if base_model:
remove_classification_head_(state_dict)
rename_keys = create_rename_keys(config, base_model=base_model)
for src, dest in rename_keys:
rename_key(state_dict, src, dest)
read_in_q_k_v(state_dict, config, base_model)
# load HuggingFace model
if base_model:
model = ViTModel(config, add_pooling_layer=False).eval()
else:
model = ViTForImageClassification(config).eval()
model.load_state_dict(state_dict)
# Check outputs on an image, prepared by ViTFeatureExtractor
feature_extractor = ViTFeatureExtractor()
encoding = feature_extractor(images=prepare_img(), return_tensors="pt")
pixel_values = encoding["pixel_values"]
outputs = model(pixel_values)
if base_model:
final_hidden_state_cls_token = original_model(pixel_values)
assert torch.allclose(final_hidden_state_cls_token, outputs.last_hidden_state[:, 0, :], atol=1e-1)
else:
logits = original_model(pixel_values)
assert logits.shape == outputs.logits.shape
assert torch.allclose(logits, outputs.logits, atol=1e-3)
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model {model_name} to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving feature extractor to {pytorch_dump_folder_path}")
feature_extractor.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to our ViT structure. |
10,890 | import copy
from typing import Any, Callable, List, Optional, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen import partitioning as nn_partitioning
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_longt5 import LongT5Config
The provided code snippet includes necessary dependencies for implementing the `shift_tokens_right` function. Write a Python function `def shift_tokens_right(input_ids: np.array, pad_token_id: int, decoder_start_token_id: int) -> np.ndarray` to solve the following problem:
Shift input ids one token to the right.
Here is the function:
def shift_tokens_right(input_ids: np.array, pad_token_id: int, decoder_start_token_id: int) -> np.ndarray:
"""
Shift input ids one token to the right.
"""
shifted_input_ids = np.zeros_like(input_ids)
shifted_input_ids[:, 1:] = input_ids[:, :-1]
shifted_input_ids[:, 0] = decoder_start_token_id
shifted_input_ids = np.where(shifted_input_ids == -100, pad_token_id, shifted_input_ids)
return shifted_input_ids | Shift input ids one token to the right. |
10,891 | import copy
from typing import Any, Callable, List, Optional, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen import partitioning as nn_partitioning
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_longt5 import LongT5Config
def _split_into_blocks(x: jnp.ndarray, block_len: int, axis: int) -> jnp.ndarray:
"""Split an input array into blocks of a given `block_len` along the given `axis`. If the dimension length
is not a multiple of `block_len`, it will be padded first with selected `pad_value`.
"""
# pad tensor to multiple of block_len
if x.shape[axis] % block_len != 0:
x = _pad_to_multiple(x, block_len, axis, pad_value=0)
num_blocks = x.shape[axis] // block_len
output_shape = x.shape[:axis] + (num_blocks, block_len) + x.shape[(axis + 1) :]
return x.reshape(output_shape)
def _concatenate_3_blocks(x: jnp.ndarray, block_axis: int, sequence_axis: int, pad_value: int = 0) -> jnp.ndarray:
"""Concatenate three consecutive blocks for each input block for local attentiont.
For more information, see: https://arxiv.org/pdf/2112.07916.pdf.
"""
num_blocks = x.shape[block_axis]
pad = [(0, 0)] * x.ndim
pad[block_axis] = (1, 1)
# [batch_size, num_blocks, block_len] -> [batch_size, num_blocks + 2, block_len]
x = jnp.pad(x, pad_width=pad, mode="constant", constant_values=pad_value)
blocks_list: List[np.array] = []
for i in range(3):
# We use indexing approach here:
# https://numpy.org/doc/stable/user/basics.indexing.html#dealing-with-variable-numbers-of-indices-within-programs
indices = [slice(0, None)] * x.ndim
indices[block_axis] = slice(i, i + num_blocks)
indices = tuple(indices)
blocks_list.append(x[indices])
return jnp.concatenate(blocks_list, axis=sequence_axis) # [batch_size, num_blocks, 3 * block_len, ...]
def _mask_local_attention_mask(local_attention_mask: np.ndarray, block_len: int) -> jnp.ndarray:
"""Mask local attention mask to enforce that tokens are not allowed to attend tokens farther than ``local_radius."""
relative_position_ids = _make_3block_relative_position_ids(block_len)
locality_mask = jnp.abs(relative_position_ids) < block_len
locality_mask = locality_mask[None, None, :, :]
return jnp.logical_and(local_attention_mask, locality_mask)
The provided code snippet includes necessary dependencies for implementing the `_get_local_attention_mask` function. Write a Python function `def _get_local_attention_mask(attention_mask: np.ndarray, block_len: int) -> jnp.ndarray` to solve the following problem:
Prepare attention mask to be applied for a local attention.
Here is the function:
def _get_local_attention_mask(attention_mask: np.ndarray, block_len: int) -> jnp.ndarray:
"""Prepare attention mask to be applied for a local attention."""
# [batch_size, num_blocks, block_len]
_blocked_attention_mask = _split_into_blocks(attention_mask, block_len, axis=1)
# [batch_size, num_block, 3 * block_len]
_3blocked_attention_mask = _concatenate_3_blocks(_blocked_attention_mask, block_axis=1, sequence_axis=2)
_blocked_attention_mask = _blocked_attention_mask[..., None]
_3blocked_attention_mask = _3blocked_attention_mask[..., None, :]
# [batch_size, num_block, block_len, 3 * block_len]
local_attention_mask = jnp.logical_and(_blocked_attention_mask, _3blocked_attention_mask)
local_attention_mask = _mask_local_attention_mask(local_attention_mask, block_len)
# [batch_size, 1, num_block, block_len, 3 * block_len]
return local_attention_mask[:, None, ...] | Prepare attention mask to be applied for a local attention. |
10,892 | import copy
from typing import Any, Callable, List, Optional, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen import partitioning as nn_partitioning
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_longt5 import LongT5Config
def _make_global_fixed_block_ids(attention_mask: np.ndarray, global_block_size: int) -> Tuple[jnp.ndarray, np.ndarray]:
"""Obtain the "fixed block" global id corresponding to each input token.
This implementation is a simlified version of the original Flaxformr implementation adopted from:
https://github.com/google/flaxformer/blob/main/flaxformer/architectures/longt5/long_attention.py.
In our scenario, as we use this strategy only for a decoder, orphan tokens, i.e. those tokens which do not make for
the whole fixed block, are assigned to the preceding block.
Padding tokens from the original sequence are represented by -1.
"""
batch_size, seq_len = attention_mask.shape[:2]
def handle_orphan_tokens(block_ids: np.ndarray) -> jnp.ndarray:
block_ends = (jnp.arange(seq_len) % global_block_size) == global_block_size - 1
true_block_ends = jnp.logical_and(block_ends, block_ids >= 0)
full_blocks = true_block_ends.sum(-1)[..., None]
block_ids = jnp.minimum(block_ids, full_blocks - 1)
return block_ids
fixed_block_mask = jnp.ones_like(attention_mask) / global_block_size
fixed_block_mask = jnp.cumsum(fixed_block_mask, axis=1) - fixed_block_mask
mask = jnp.where(attention_mask != 0.0, 1.0, -1000.0)
global_block_ids = jnp.maximum(
jnp.floor(mask + fixed_block_mask - 1.0), jnp.array(-1.0, dtype=attention_mask.dtype)
)
# set padding tokens to -1
global_block_ids = (global_block_ids * attention_mask) + (attention_mask - 1)
# [batch_size, seq_len]
global_block_ids = handle_orphan_tokens(global_block_ids)
num_globals = seq_len // global_block_size
# [batch_size, seq_len // global_block_size]
if num_globals > 0:
_sequence_block_ids_max = jnp.repeat(global_block_ids.max(axis=-1)[:, None], repeats=num_globals, axis=1)
else:
_sequence_block_ids_max = jnp.zeros((batch_size, 0), dtype=global_block_ids.dtype)
global_segment_ids = jnp.cumsum(jnp.ones((batch_size, num_globals)), axis=-1) - 1
global_segment_ids = jnp.where(global_segment_ids <= _sequence_block_ids_max, 1, 0)
return global_block_ids, global_segment_ids
The provided code snippet includes necessary dependencies for implementing the `_make_side_relative_position_ids` function. Write a Python function `def _make_side_relative_position_ids(attention_mask: np.ndarray, global_block_size: int) -> np.ndarray` to solve the following problem:
Create the relative position tensor for local -> global attention.
Here is the function:
def _make_side_relative_position_ids(attention_mask: np.ndarray, global_block_size: int) -> np.ndarray:
"""Create the relative position tensor for local -> global attention."""
block_ids, global_segment_ids = _make_global_fixed_block_ids(attention_mask, global_block_size)
global_seq_len = global_segment_ids.shape[-1]
global_positions = jnp.arange(global_seq_len)
side_relative_position = global_positions - block_ids[..., None]
return side_relative_position | Create the relative position tensor for local -> global attention. |
10,893 | import copy
from typing import Any, Callable, List, Optional, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen import partitioning as nn_partitioning
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_longt5 import LongT5Config
The provided code snippet includes necessary dependencies for implementing the `_create_global_aggregates` function. Write a Python function `def _create_global_aggregates(hidden_states: np.ndarray, block_ids: np.ndarray, global_seq_len: int) -> np.ndarray` to solve the following problem:
Compute individual block aggregates by summing over individual blocks.
Here is the function:
def _create_global_aggregates(hidden_states: np.ndarray, block_ids: np.ndarray, global_seq_len: int) -> np.ndarray:
"""Compute individual block aggregates by summing over individual blocks."""
# (batch..., seq_len, global_seq_len))
one_hot_block_ids = jax.nn.one_hot(block_ids, global_seq_len)
return jnp.einsum("...nd,...ng->...gd", hidden_states, one_hot_block_ids) | Compute individual block aggregates by summing over individual blocks. |
10,894 | import argparse
from t5x import checkpoints
from transformers import AutoConfig, FlaxAutoModelForSeq2SeqLM
def convert_t5x_checkpoint_to_flax(t5x_checkpoint_path, config_name, flax_dump_folder_path):
config = AutoConfig.from_pretrained(config_name)
flax_model = FlaxAutoModelForSeq2SeqLM.from_config(config=config)
t5x_model = checkpoints.load_t5x_checkpoint(t5x_checkpoint_path)
split_mlp_wi = "wi_0" in t5x_model["target"]["encoder"]["layers_0"]["mlp"]
if config.model_type == "t5":
encoder_attn_name = "SelfAttention"
if config.model_type == "longt5" and config.encoder_attention_type == "local":
encoder_attn_name = "LocalSelfAttention"
elif config.model_type == "longt5" and config.encoder_attention_type == "transient-global":
encoder_attn_name = "TransientGlobalSelfAttention"
else:
raise ValueError(
"Given config is expected to have `model_type='t5'`, or `model_type='longt5` with `encoder_attention_type`"
" attribute with a value from ['local', 'transient-global]."
)
# Encoder
for layer_index in range(config.num_layers):
layer_name = f"layers_{str(layer_index)}"
# Self-Attention
t5x_attention_key = t5x_model["target"]["encoder"][layer_name]["attention"]["key"]["kernel"]
t5x_attention_out = t5x_model["target"]["encoder"][layer_name]["attention"]["out"]["kernel"]
t5x_attention_query = t5x_model["target"]["encoder"][layer_name]["attention"]["query"]["kernel"]
t5x_attention_value = t5x_model["target"]["encoder"][layer_name]["attention"]["value"]["kernel"]
# Global input layer norm
if config.model_type == "longt5" and config.encoder_attention_type == "transient-global":
t5x_global_layer_norm = t5x_model["target"]["encoder"][layer_name]["attention"]["T5LayerNorm_0"]["scale"]
# Layer Normalization
t5x_attention_layer_norm = t5x_model["target"]["encoder"][layer_name]["pre_attention_layer_norm"]["scale"]
if split_mlp_wi:
t5x_mlp_wi_0 = t5x_model["target"]["encoder"][layer_name]["mlp"]["wi_0"]["kernel"]
t5x_mlp_wi_1 = t5x_model["target"]["encoder"][layer_name]["mlp"]["wi_1"]["kernel"]
else:
t5x_mlp_wi = t5x_model["target"]["encoder"][layer_name]["mlp"]["wi"]["kernel"]
t5x_mlp_wo = t5x_model["target"]["encoder"][layer_name]["mlp"]["wo"]["kernel"]
# Layer Normalization
t5x_mlp_layer_norm = t5x_model["target"]["encoder"][layer_name]["pre_mlp_layer_norm"]["scale"]
# Assigning
flax_model_encoder_layer_block = flax_model.params["encoder"]["block"][str(layer_index)]["layer"]
flax_model_encoder_layer_block["0"][encoder_attn_name]["k"]["kernel"] = t5x_attention_key
flax_model_encoder_layer_block["0"][encoder_attn_name]["o"]["kernel"] = t5x_attention_out
flax_model_encoder_layer_block["0"][encoder_attn_name]["q"]["kernel"] = t5x_attention_query
flax_model_encoder_layer_block["0"][encoder_attn_name]["v"]["kernel"] = t5x_attention_value
flax_model_encoder_layer_block["0"]["layer_norm"]["weight"] = t5x_attention_layer_norm
# Global input layer norm
if config.model_type == "longt5" and config.encoder_attention_type == "transient-global":
flax_model_encoder_layer_block["0"][encoder_attn_name]["global_input_layer_norm"][
"weight"
] = t5x_global_layer_norm
if split_mlp_wi:
flax_model_encoder_layer_block["1"]["DenseReluDense"]["wi_0"]["kernel"] = t5x_mlp_wi_0
flax_model_encoder_layer_block["1"]["DenseReluDense"]["wi_1"]["kernel"] = t5x_mlp_wi_1
else:
flax_model_encoder_layer_block["1"]["DenseReluDense"]["wi"]["kernel"] = t5x_mlp_wi
flax_model_encoder_layer_block["1"]["DenseReluDense"]["wo"]["kernel"] = t5x_mlp_wo
flax_model_encoder_layer_block["1"]["layer_norm"]["weight"] = t5x_mlp_layer_norm
flax_model.params["encoder"]["block"][str(layer_index)]["layer"] = flax_model_encoder_layer_block
# Only for layer 0:
t5x_encoder_rel_embedding = t5x_model["target"]["encoder"]["relpos_bias"]["rel_embedding"].T
flax_model.params["encoder"]["block"]["0"]["layer"]["0"][encoder_attn_name]["relative_attention_bias"][
"embedding"
] = t5x_encoder_rel_embedding
# Side/global relative position_bias + layer norm
if config.model_type == "longt5" and config.encoder_attention_type == "transient-global":
t5x_encoder_global_rel_embedding = t5x_model["target"]["encoder"]["side_relpos_bias"]["rel_embedding"].T
flax_model.params["encoder"]["block"]["0"]["layer"]["0"][encoder_attn_name]["global_relative_attention_bias"][
"embedding"
] = t5x_encoder_global_rel_embedding
# Assigning
t5x_encoder_norm = t5x_model["target"]["encoder"]["encoder_norm"]["scale"]
flax_model.params["encoder"]["final_layer_norm"]["weight"] = t5x_encoder_norm
# Decoder
for layer_index in range(config.num_layers):
layer_name = f"layers_{str(layer_index)}"
# Self-Attention
t5x_attention_key = t5x_model["target"]["decoder"][layer_name]["self_attention"]["key"]["kernel"]
t5x_attention_out = t5x_model["target"]["decoder"][layer_name]["self_attention"]["out"]["kernel"]
t5x_attention_query = t5x_model["target"]["decoder"][layer_name]["self_attention"]["query"]["kernel"]
t5x_attention_value = t5x_model["target"]["decoder"][layer_name]["self_attention"]["value"]["kernel"]
# Layer Normalization
t5x_pre_attention_layer_norm = t5x_model["target"]["decoder"][layer_name]["pre_self_attention_layer_norm"][
"scale"
]
# Encoder-Decoder-Attention
t5x_enc_dec_attention_module = t5x_model["target"]["decoder"][layer_name]["encoder_decoder_attention"]
t5x_enc_dec_attention_key = t5x_enc_dec_attention_module["key"]["kernel"]
t5x_enc_dec_attention_out = t5x_enc_dec_attention_module["out"]["kernel"]
t5x_enc_dec_attention_query = t5x_enc_dec_attention_module["query"]["kernel"]
t5x_enc_dec_attention_value = t5x_enc_dec_attention_module["value"]["kernel"]
# Layer Normalization
t5x_cross_layer_norm = t5x_model["target"]["decoder"][layer_name]["pre_cross_attention_layer_norm"]["scale"]
# MLP
if split_mlp_wi:
t5x_mlp_wi_0 = t5x_model["target"]["decoder"][layer_name]["mlp"]["wi_0"]["kernel"]
t5x_mlp_wi_1 = t5x_model["target"]["decoder"][layer_name]["mlp"]["wi_1"]["kernel"]
else:
t5x_mlp_wi = t5x_model["target"]["decoder"][layer_name]["mlp"]["wi"]["kernel"]
t5x_mlp_wo = t5x_model["target"]["decoder"][layer_name]["mlp"]["wo"]["kernel"]
# Layer Normalization
tx5_mlp_layer_norm = t5x_model["target"]["decoder"][layer_name]["pre_mlp_layer_norm"]["scale"]
# Assigning
flax_model_decoder_layer_block = flax_model.params["decoder"]["block"][str(layer_index)]["layer"]
flax_model_decoder_layer_block["0"]["SelfAttention"]["k"]["kernel"] = t5x_attention_key
flax_model_decoder_layer_block["0"]["SelfAttention"]["o"]["kernel"] = t5x_attention_out
flax_model_decoder_layer_block["0"]["SelfAttention"]["q"]["kernel"] = t5x_attention_query
flax_model_decoder_layer_block["0"]["SelfAttention"]["v"]["kernel"] = t5x_attention_value
flax_model_decoder_layer_block["0"]["layer_norm"]["weight"] = t5x_pre_attention_layer_norm
flax_model_decoder_layer_block["1"]["EncDecAttention"]["k"]["kernel"] = t5x_enc_dec_attention_key
flax_model_decoder_layer_block["1"]["EncDecAttention"]["o"]["kernel"] = t5x_enc_dec_attention_out
flax_model_decoder_layer_block["1"]["EncDecAttention"]["q"]["kernel"] = t5x_enc_dec_attention_query
flax_model_decoder_layer_block["1"]["EncDecAttention"]["v"]["kernel"] = t5x_enc_dec_attention_value
flax_model_decoder_layer_block["1"]["layer_norm"]["weight"] = t5x_cross_layer_norm
if split_mlp_wi:
flax_model_decoder_layer_block["2"]["DenseReluDense"]["wi_0"]["kernel"] = t5x_mlp_wi_0
flax_model_decoder_layer_block["2"]["DenseReluDense"]["wi_1"]["kernel"] = t5x_mlp_wi_1
else:
flax_model_decoder_layer_block["2"]["DenseReluDense"]["wi"]["kernel"] = t5x_mlp_wi
flax_model_decoder_layer_block["2"]["DenseReluDense"]["wo"]["kernel"] = t5x_mlp_wo
flax_model_decoder_layer_block["2"]["layer_norm"]["weight"] = tx5_mlp_layer_norm
flax_model.params["decoder"]["block"][str(layer_index)]["layer"] = flax_model_decoder_layer_block
# Decoder Normalization
tx5_decoder_norm = t5x_model["target"]["decoder"]["decoder_norm"]["scale"]
flax_model.params["decoder"]["final_layer_norm"]["weight"] = tx5_decoder_norm
# Only for layer 0:
t5x_decoder_rel_embedding = t5x_model["target"]["decoder"]["relpos_bias"]["rel_embedding"].T
flax_model.params["decoder"]["block"]["0"]["layer"]["0"]["SelfAttention"]["relative_attention_bias"][
"embedding"
] = t5x_decoder_rel_embedding
# Token Embeddings
tx5_token_embeddings = t5x_model["target"]["token_embedder"]["embedding"]
flax_model.params["shared"]["embedding"] = tx5_token_embeddings
# LM Head (only in v1.1 and LongT5 checkpoints)
if "logits_dense" in t5x_model["target"]["decoder"]:
flax_model.params["lm_head"]["kernel"] = t5x_model["target"]["decoder"]["logits_dense"]["kernel"]
flax_model.save_pretrained(flax_dump_folder_path)
print("T5X Model was sucessfully converted!") | null |
10,895 | import copy
import math
import warnings
from typing import Any, List, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from torch.utils.checkpoint import checkpoint
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import ALL_LAYERNORM_LAYERS, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
DUMMY_INPUTS,
DUMMY_MASK,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_torch_fx_proxy,
logging,
replace_return_docstrings,
)
from .configuration_longt5 import LongT5Config
def _split_into_blocks(x: torch.Tensor, block_len: int, dim: int) -> torch.Tensor:
"""Split an input tensor into blocks of a given `block_len` along the given `dim`. If the dimension length
is not a multiple of `block_len`, it will be padded first with selected `pad_value`.
"""
# pad tensor to multiple of block_len
if x.shape[dim] % block_len != 0:
x = _pad_to_multiple(x, block_len, dim, pad_value=0)
num_blocks = x.shape[dim] // block_len
output_shape = x.shape[:dim] + (num_blocks, block_len) + x.shape[(dim + 1) :]
# If 0 is in output_shape, we cannot apply reshape because of incompatibility with ONNX conversion
if 0 in output_shape:
return torch.empty(output_shape, dtype=x.dtype, device=x.device)
return x.reshape(output_shape)
def _concatenate_3_blocks(x: torch.Tensor, block_dim: int, sequence_dim: int, pad_value: int = 0) -> torch.Tensor:
"""Concatenate three consecutive blocks for each input block for local attentiont.
For more information, see: https://arxiv.org/pdf/2112.07916.pdf.
"""
num_blocks = x.shape[block_dim]
pad = [(0, 0)] * x.ndim
pad[block_dim] = (1, 1)
pad = sum(pad[::-1], ())
# [batch_size, num_blocks, block_len] -> [batch_size, num_blocks + 2, block_len]
x = nn.functional.pad(x, pad=pad, mode="constant", value=pad_value)
blocks_list: List[torch.Tensor] = []
for i in range(3):
# We use indexing approach here:
# https://numpy.org/doc/stable/user/basics.indexing.html#dealing-with-variable-numbers-of-indices-within-programs
indices = [slice(0, None)] * x.ndim
indices[block_dim] = slice(i, i + num_blocks)
indices = tuple(indices)
blocks_list.append(x[indices])
# [batch_size, num_blocks, 3 * block_len, ...]
return torch.cat(blocks_list, dim=sequence_dim)
def _mask_local_attention_mask(local_attention_mask: torch.Tensor, block_len: int) -> torch.Tensor:
"""Mask local attention mask to enforce that tokens are not allowed to attend tokens farther than ``local_radius."""
relative_position_ids = _make_3block_relative_position_ids(block_len)
locality_mask = torch.abs(relative_position_ids) < block_len
locality_mask = locality_mask[None, None, :, :]
locality_mask = locality_mask.to(local_attention_mask.device)
return torch.logical_and(local_attention_mask, locality_mask)
The provided code snippet includes necessary dependencies for implementing the `_get_local_attention_mask` function. Write a Python function `def _get_local_attention_mask(attention_mask: torch.Tensor, block_len: int, device: torch.device) -> torch.Tensor` to solve the following problem:
Prepare attention mask to be applied for a local attention.
Here is the function:
def _get_local_attention_mask(attention_mask: torch.Tensor, block_len: int, device: torch.device) -> torch.Tensor:
"""Prepare attention mask to be applied for a local attention."""
# [batch_size, num_blocks, block_len]
_blocked_attention_mask = _split_into_blocks(attention_mask, block_len, dim=1)
# [batch_size, num_block, 3 * block_len]
_3blocked_attention_mask = _concatenate_3_blocks(_blocked_attention_mask, block_dim=1, sequence_dim=2)
_blocked_attention_mask = _blocked_attention_mask.unsqueeze(-1)
_3blocked_attention_mask = _3blocked_attention_mask.unsqueeze(-2)
# [batch_size, num_block, block_len, 3 * block_len]
local_attention_mask = torch.logical_and(_blocked_attention_mask, _3blocked_attention_mask)
local_attention_mask = _mask_local_attention_mask(local_attention_mask, block_len)
# [batch_size, 1, num_block, block_len, 3 * block_len]
return local_attention_mask.unsqueeze(1).to(device) | Prepare attention mask to be applied for a local attention. |
10,896 | import copy
import math
import warnings
from typing import Any, List, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from torch.utils.checkpoint import checkpoint
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import ALL_LAYERNORM_LAYERS, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
DUMMY_INPUTS,
DUMMY_MASK,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_torch_fx_proxy,
logging,
replace_return_docstrings,
)
from .configuration_longt5 import LongT5Config
def _make_global_fixed_block_ids(
attention_mask: torch.Tensor, global_block_size: int
) -> Tuple[torch.Tensor, torch.Tensor]:
"""Obtain the "fixed block" global id corresponding to each input token.
This implementation is a simlified version of the original Flaxformr implementation adopted from:
https://github.com/google/flaxformer/blob/main/flaxformer/architectures/longt5/long_attention.py.
In our scenario, as we use this strategy only for a decoder, orphan tokens, i.e. those tokens which do not make for
the whole fixed block, are assigned to the preceding block.
Padding tokens from the original sequence are represented by -1.
"""
batch_size, seq_len = attention_mask.shape[:2]
def handle_orphan_tokens(block_ids: torch.Tensor) -> torch.Tensor:
block_ends = (torch.arange(seq_len) % global_block_size) == global_block_size - 1
block_ends = block_ends.to(block_ids.device)
true_block_ends = torch.logical_and(block_ends, block_ids >= 0)
full_blocks = true_block_ends.sum(-1).unsqueeze(-1).type(block_ids.dtype) - 1
block_ids = torch.where(block_ids < full_blocks, block_ids, full_blocks)
return block_ids
fixed_block_mask = torch.ones_like(attention_mask, device=attention_mask.device) / global_block_size
fixed_block_mask = torch.cumsum(fixed_block_mask, axis=1) - fixed_block_mask
mask = torch.where(attention_mask != 0.0, 1.0, -1000.0).type(attention_mask.dtype)
global_block_ids = torch.floor(mask + fixed_block_mask - 1.0).type(attention_mask.dtype)
_global_block_ids_lower_bound = torch.tensor(-1, dtype=global_block_ids.dtype, device=global_block_ids.device)
global_block_ids = torch.where(
global_block_ids > _global_block_ids_lower_bound, global_block_ids, _global_block_ids_lower_bound
)
# set padding tokens to -1
global_block_ids = (global_block_ids * attention_mask) + (attention_mask - 1)
# [batch_size, seq_len]
global_block_ids = handle_orphan_tokens(global_block_ids)
num_globals = seq_len // global_block_size
# [batch_size, seq_len // global_block_size]
if num_globals > 0:
_sequence_block_ids_max = torch.max(global_block_ids, dim=-1).values.repeat(num_globals, 1).transpose(0, 1)
else:
_sequence_block_ids_max = torch.zeros(
batch_size, 0, dtype=global_block_ids.dtype, device=global_block_ids.device
)
global_segment_ids = torch.cumsum(torch.ones(batch_size, num_globals), dim=-1) - 1
global_segment_ids = global_segment_ids.to(attention_mask.device)
global_segment_ids = torch.where(global_segment_ids <= _sequence_block_ids_max, 1, 0)
return global_block_ids.type(torch.int), global_segment_ids.type(torch.int)
The provided code snippet includes necessary dependencies for implementing the `_make_side_relative_position_ids` function. Write a Python function `def _make_side_relative_position_ids(attention_mask: torch.Tensor, global_block_size: int) -> torch.Tensor` to solve the following problem:
Create the relative position tensor for local -> global attention.
Here is the function:
def _make_side_relative_position_ids(attention_mask: torch.Tensor, global_block_size: int) -> torch.Tensor:
"""Create the relative position tensor for local -> global attention."""
block_ids, global_segment_ids = _make_global_fixed_block_ids(attention_mask, global_block_size)
global_seq_len = global_segment_ids.shape[-1]
global_positions = torch.arange(global_seq_len, device=block_ids.device)
side_relative_position = global_positions - block_ids[..., None]
return side_relative_position.type(torch.int64) | Create the relative position tensor for local -> global attention. |
10,897 | import copy
import math
import warnings
from typing import Any, List, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from torch.utils.checkpoint import checkpoint
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import ALL_LAYERNORM_LAYERS, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
DUMMY_INPUTS,
DUMMY_MASK,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_torch_fx_proxy,
logging,
replace_return_docstrings,
)
from .configuration_longt5 import LongT5Config
The provided code snippet includes necessary dependencies for implementing the `_create_global_aggregates` function. Write a Python function `def _create_global_aggregates( hidden_states: torch.Tensor, block_ids: torch.Tensor, global_seq_len: int ) -> torch.Tensor` to solve the following problem:
Compute individual block aggregates by summing over individual blocks.
Here is the function:
def _create_global_aggregates(
hidden_states: torch.Tensor, block_ids: torch.Tensor, global_seq_len: int
) -> torch.Tensor:
"""Compute individual block aggregates by summing over individual blocks."""
# (batch..., seq_len, global_seq_len))
block_ids = block_ids.where(
block_ids >= 0, torch.tensor(global_seq_len, dtype=block_ids.dtype, device=block_ids.device)
)
one_hot_block_ids = nn.functional.one_hot(block_ids.type(torch.int64), global_seq_len + 1)[:, :, :-1]
return torch.einsum("...nd,...ng->...gd", hidden_states, one_hot_block_ids.type(hidden_states.dtype)) | Compute individual block aggregates by summing over individual blocks. |
10,898 | import math
import random
from functools import partial
from typing import Callable, Optional, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
FlaxSeq2SeqQuestionAnsweringModelOutput,
FlaxSeq2SeqSequenceClassifierOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_mbart import MBartConfig
The provided code snippet includes necessary dependencies for implementing the `shift_tokens_right` function. Write a Python function `def shift_tokens_right(input_ids: jnp.ndarray, pad_token_id: int) -> jnp.ndarray` to solve the following problem:
Shift input ids one token to the right, and wrap the last non pad token (the <LID> token) Note that MBart does not have a single `decoder_start_token_id` in contrast to other Bart-like models.
Here is the function:
def shift_tokens_right(input_ids: jnp.ndarray, pad_token_id: int) -> jnp.ndarray:
"""
Shift input ids one token to the right, and wrap the last non pad token (the <LID> token) Note that MBart does not
have a single `decoder_start_token_id` in contrast to other Bart-like models.
"""
prev_output_tokens = np.array(input_ids).copy()
if pad_token_id is None:
raise ValueError("self.model.config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
prev_output_tokens = np.where(prev_output_tokens == -100, pad_token_id, input_ids)
index_of_eos = (np.where(prev_output_tokens != pad_token_id, 1, 0).sum(axis=-1) - 1).reshape(-1, 1)
decoder_start_tokens = np.array(
[prev_output_tokens[i, eos_idx] for i, eos_idx in enumerate(index_of_eos)], dtype=np.int32
).squeeze()
prev_output_tokens[:, 1:] = prev_output_tokens[:, :-1].copy()
prev_output_tokens[:, 0] = decoder_start_tokens
return prev_output_tokens | Shift input ids one token to the right, and wrap the last non pad token (the <LID> token) Note that MBart does not have a single `decoder_start_token_id` in contrast to other Bart-like models. |
10,899 | import random
from typing import Optional, Tuple, Union
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPastAndCrossAttentions,
TFSeq2SeqLMOutput,
TFSeq2SeqModelOutput,
)
from ...modeling_tf_utils import (
DUMMY_INPUTS,
TFCausalLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ContextManagers,
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_mbart import MBartConfig
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
The provided code snippet includes necessary dependencies for implementing the `shift_tokens_right` function. Write a Python function `def shift_tokens_right(input_ids: tf.Tensor, pad_token_id: int)` to solve the following problem:
Shift input ids one token to the right, and wrap the last non pad token (the <LID> token) Note that MBart does not have a single `decoder_start_token_id` in contrast to other Bart-like models.
Here is the function:
def shift_tokens_right(input_ids: tf.Tensor, pad_token_id: int):
"""
Shift input ids one token to the right, and wrap the last non pad token (the <LID> token) Note that MBart does not
have a single `decoder_start_token_id` in contrast to other Bart-like models.
"""
if pad_token_id is None:
raise ValueError("self.model.config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
input_ids = tf.where(
input_ids == -100, tf.fill(shape_list(input_ids), tf.cast(pad_token_id, input_ids.dtype)), input_ids
)
language_id_index = (
tf.reduce_sum(tf.cast(tf.math.not_equal(input_ids, pad_token_id), dtype=input_ids.dtype), axis=-1) - 1
)
language_id_index = tf.stack(
[tf.range(shape_list(input_ids)[0], dtype=input_ids.dtype), language_id_index], axis=-1
)
languages_ids = tf.gather_nd(input_ids, language_id_index)
shifted_input_ids = tf.concat([tf.expand_dims(languages_ids, axis=-1), input_ids[:, :-1]], axis=-1)
return shifted_input_ids | Shift input ids one token to the right, and wrap the last non pad token (the <LID> token) Note that MBart does not have a single `decoder_start_token_id` in contrast to other Bart-like models. |
10,900 | import random
from typing import Optional, Tuple, Union
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPastAndCrossAttentions,
TFSeq2SeqLMOutput,
TFSeq2SeqModelOutput,
)
from ...modeling_tf_utils import (
DUMMY_INPUTS,
TFCausalLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ContextManagers,
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_mbart import MBartConfig
LARGE_NEGATIVE = -1e8
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
The provided code snippet includes necessary dependencies for implementing the `_make_causal_mask` function. Write a Python function `def _make_causal_mask(input_ids_shape: tf.TensorShape, past_key_values_length: int = 0)` to solve the following problem:
Make causal mask used for bi-directional self-attention.
Here is the function:
def _make_causal_mask(input_ids_shape: tf.TensorShape, past_key_values_length: int = 0):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz = input_ids_shape[0]
tgt_len = input_ids_shape[1]
mask = tf.ones((tgt_len, tgt_len)) * LARGE_NEGATIVE
mask_cond = tf.range(shape_list(mask)[-1])
mask = tf.where(mask_cond < tf.reshape(mask_cond + 1, (shape_list(mask)[-1], 1)), 0.0, mask)
if past_key_values_length > 0:
mask = tf.concat([tf.zeros((tgt_len, past_key_values_length)), mask], axis=-1)
return tf.tile(mask[None, None, :, :], (bsz, 1, 1, 1)) | Make causal mask used for bi-directional self-attention. |
10,901 | import random
from typing import Optional, Tuple, Union
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPastAndCrossAttentions,
TFSeq2SeqLMOutput,
TFSeq2SeqModelOutput,
)
from ...modeling_tf_utils import (
DUMMY_INPUTS,
TFCausalLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ContextManagers,
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_mbart import MBartConfig
LARGE_NEGATIVE = -1e8
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
The provided code snippet includes necessary dependencies for implementing the `_expand_mask` function. Write a Python function `def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None)` to solve the following problem:
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
Here is the function:
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE | Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`. |
10,902 | import copy
import math
import random
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
Seq2SeqQuestionAnsweringModelOutput,
Seq2SeqSequenceClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_mbart import MBartConfig
The provided code snippet includes necessary dependencies for implementing the `shift_tokens_right` function. Write a Python function `def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int)` to solve the following problem:
Shift input ids one token to the right, and wrap the last non pad token (the <LID> token) Note that MBart does not have a single `decoder_start_token_id` in contrast to other Bart-like models.
Here is the function:
def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int):
"""
Shift input ids one token to the right, and wrap the last non pad token (the <LID> token) Note that MBart does not
have a single `decoder_start_token_id` in contrast to other Bart-like models.
"""
prev_output_tokens = input_ids.clone()
if pad_token_id is None:
raise ValueError("self.model.config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
prev_output_tokens.masked_fill_(prev_output_tokens == -100, pad_token_id)
index_of_eos = (prev_output_tokens.ne(pad_token_id).sum(dim=1) - 1).unsqueeze(-1)
decoder_start_tokens = prev_output_tokens.gather(1, index_of_eos).squeeze()
prev_output_tokens[:, 1:] = prev_output_tokens[:, :-1].clone()
prev_output_tokens[:, 0] = decoder_start_tokens
return prev_output_tokens | Shift input ids one token to the right, and wrap the last non pad token (the <LID> token) Note that MBart does not have a single `decoder_start_token_id` in contrast to other Bart-like models. |
10,903 | import copy
import math
import random
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
Seq2SeqQuestionAnsweringModelOutput,
Seq2SeqSequenceClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_mbart import MBartConfig
The provided code snippet includes necessary dependencies for implementing the `_make_causal_mask` function. Write a Python function `def _make_causal_mask(input_ids_shape: torch.Size, dtype: torch.dtype, past_key_values_length: int = 0)` to solve the following problem:
Make causal mask used for bi-directional self-attention.
Here is the function:
def _make_causal_mask(input_ids_shape: torch.Size, dtype: torch.dtype, past_key_values_length: int = 0):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz, tgt_len = input_ids_shape
mask = torch.full((tgt_len, tgt_len), torch.tensor(torch.finfo(dtype).min))
mask_cond = torch.arange(mask.size(-1))
mask.masked_fill_(mask_cond < (mask_cond + 1).view(mask.size(-1), 1), 0)
mask = mask.to(dtype)
if past_key_values_length > 0:
mask = torch.cat([torch.zeros(tgt_len, past_key_values_length, dtype=dtype), mask], dim=-1)
return mask[None, None, :, :].expand(bsz, 1, tgt_len, tgt_len + past_key_values_length) | Make causal mask used for bi-directional self-attention. |
10,904 | import copy
import math
import random
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
Seq2SeqQuestionAnsweringModelOutput,
Seq2SeqSequenceClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_mbart import MBartConfig
The provided code snippet includes necessary dependencies for implementing the `_expand_mask` function. Write a Python function `def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None)` to solve the following problem:
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
Here is the function:
def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
bsz, src_len = mask.size()
tgt_len = tgt_len if tgt_len is not None else src_len
expanded_mask = mask[:, None, None, :].expand(bsz, 1, tgt_len, src_len).to(dtype)
inverted_mask = 1.0 - expanded_mask
return inverted_mask.masked_fill(inverted_mask.to(torch.bool), torch.finfo(dtype).min) | Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`. |
10,905 | import argparse
import torch
from torch import nn
from transformers import MBartConfig, MBartForConditionalGeneration
def remove_ignore_keys_(state_dict):
ignore_keys = [
"encoder.version",
"decoder.version",
"model.encoder.version",
"model.decoder.version",
"_float_tensor",
"decoder.output_projection.weight",
]
for k in ignore_keys:
state_dict.pop(k, None)
def make_linear_from_emb(emb):
vocab_size, emb_size = emb.weight.shape
lin_layer = nn.Linear(vocab_size, emb_size, bias=False)
lin_layer.weight.data = emb.weight.data
return lin_layer
def convert_fairseq_mbart_checkpoint_from_disk(
checkpoint_path, hf_config_path="facebook/mbart-large-en-ro", finetuned=False, mbart_50=False
):
state_dict = torch.load(checkpoint_path, map_location="cpu")["model"]
remove_ignore_keys_(state_dict)
vocab_size = state_dict["encoder.embed_tokens.weight"].shape[0]
mbart_config = MBartConfig.from_pretrained(hf_config_path, vocab_size=vocab_size)
if mbart_50 and finetuned:
mbart_config.activation_function = "relu"
state_dict["shared.weight"] = state_dict["decoder.embed_tokens.weight"]
model = MBartForConditionalGeneration(mbart_config)
model.model.load_state_dict(state_dict)
if finetuned:
model.lm_head = make_linear_from_emb(model.model.shared)
return model | null |
10,906 | import warnings
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_utils import PoolerAnswerClass, PoolerEndLogits, PoolerStartLogits, PreTrainedModel, SequenceSummary
from ...pytorch_utils import apply_chunking_to_forward
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_xlnet import XLNetConfig
logger = logging.get_logger(__name__)
def build_tf_xlnet_to_pytorch_map(model, config, tf_weights=None):
"""
A map of modules from TF to PyTorch. I use a map to keep the PyTorch model as identical to the original PyTorch
model as possible.
"""
tf_to_pt_map = {}
if hasattr(model, "transformer"):
if hasattr(model, "lm_loss"):
# We will load also the output bias
tf_to_pt_map["model/lm_loss/bias"] = model.lm_loss.bias
if hasattr(model, "sequence_summary") and "model/sequnece_summary/summary/kernel" in tf_weights:
# We will load also the sequence summary
tf_to_pt_map["model/sequnece_summary/summary/kernel"] = model.sequence_summary.summary.weight
tf_to_pt_map["model/sequnece_summary/summary/bias"] = model.sequence_summary.summary.bias
if (
hasattr(model, "logits_proj")
and config.finetuning_task is not None
and f"model/regression_{config.finetuning_task}/logit/kernel" in tf_weights
):
tf_to_pt_map[f"model/regression_{config.finetuning_task}/logit/kernel"] = model.logits_proj.weight
tf_to_pt_map[f"model/regression_{config.finetuning_task}/logit/bias"] = model.logits_proj.bias
# Now load the rest of the transformer
model = model.transformer
# Embeddings and output
tf_to_pt_map.update(
{
"model/transformer/word_embedding/lookup_table": model.word_embedding.weight,
"model/transformer/mask_emb/mask_emb": model.mask_emb,
}
)
# Transformer blocks
for i, b in enumerate(model.layer):
layer_str = f"model/transformer/layer_{i}/"
tf_to_pt_map.update(
{
layer_str + "rel_attn/LayerNorm/gamma": b.rel_attn.layer_norm.weight,
layer_str + "rel_attn/LayerNorm/beta": b.rel_attn.layer_norm.bias,
layer_str + "rel_attn/o/kernel": b.rel_attn.o,
layer_str + "rel_attn/q/kernel": b.rel_attn.q,
layer_str + "rel_attn/k/kernel": b.rel_attn.k,
layer_str + "rel_attn/r/kernel": b.rel_attn.r,
layer_str + "rel_attn/v/kernel": b.rel_attn.v,
layer_str + "ff/LayerNorm/gamma": b.ff.layer_norm.weight,
layer_str + "ff/LayerNorm/beta": b.ff.layer_norm.bias,
layer_str + "ff/layer_1/kernel": b.ff.layer_1.weight,
layer_str + "ff/layer_1/bias": b.ff.layer_1.bias,
layer_str + "ff/layer_2/kernel": b.ff.layer_2.weight,
layer_str + "ff/layer_2/bias": b.ff.layer_2.bias,
}
)
# Relative positioning biases
if config.untie_r:
r_r_list = []
r_w_list = []
r_s_list = []
seg_embed_list = []
for b in model.layer:
r_r_list.append(b.rel_attn.r_r_bias)
r_w_list.append(b.rel_attn.r_w_bias)
r_s_list.append(b.rel_attn.r_s_bias)
seg_embed_list.append(b.rel_attn.seg_embed)
else:
r_r_list = [model.r_r_bias]
r_w_list = [model.r_w_bias]
r_s_list = [model.r_s_bias]
seg_embed_list = [model.seg_embed]
tf_to_pt_map.update(
{
"model/transformer/r_r_bias": r_r_list,
"model/transformer/r_w_bias": r_w_list,
"model/transformer/r_s_bias": r_s_list,
"model/transformer/seg_embed": seg_embed_list,
}
)
return tf_to_pt_map
The provided code snippet includes necessary dependencies for implementing the `load_tf_weights_in_xlnet` function. Write a Python function `def load_tf_weights_in_xlnet(model, config, tf_path)` to solve the following problem:
Load tf checkpoints in a pytorch model
Here is the function:
def load_tf_weights_in_xlnet(model, config, tf_path):
"""Load tf checkpoints in a pytorch model"""
try:
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow models in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
tf_weights = {}
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
tf_weights[name] = array
# Build TF to PyTorch weights loading map
tf_to_pt_map = build_tf_xlnet_to_pytorch_map(model, config, tf_weights)
for name, pointer in tf_to_pt_map.items():
logger.info(f"Importing {name}")
if name not in tf_weights:
logger.info(f"{name} not in tf pre-trained weights, skipping")
continue
array = tf_weights[name]
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if "kernel" in name and ("ff" in name or "summary" in name or "logit" in name):
logger.info("Transposing")
array = np.transpose(array)
if isinstance(pointer, list):
# Here we will split the TF weights
assert (
len(pointer) == array.shape[0]
), f"Pointer length {len(pointer)} and array length {array.shape[0]} mismatched"
for i, p_i in enumerate(pointer):
arr_i = array[i, ...]
try:
assert (
p_i.shape == arr_i.shape
), f"Pointer shape {p_i.shape} and array shape {arr_i.shape} mismatched"
except AssertionError as e:
e.args += (p_i.shape, arr_i.shape)
raise
logger.info(f"Initialize PyTorch weight {name} for layer {i}")
p_i.data = torch.from_numpy(arr_i)
else:
try:
assert (
pointer.shape == array.shape
), f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched"
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
tf_weights.pop(name, None)
tf_weights.pop(name + "/Adam", None)
tf_weights.pop(name + "/Adam_1", None)
logger.info(f"Weights not copied to PyTorch model: {', '.join(tf_weights.keys())}")
return model | Load tf checkpoints in a pytorch model |
10,907 | import argparse
import os
import torch
from transformers import (
XLNetConfig,
XLNetForQuestionAnswering,
XLNetForSequenceClassification,
XLNetLMHeadModel,
load_tf_weights_in_xlnet,
)
from transformers.utils import CONFIG_NAME, WEIGHTS_NAME, logging
GLUE_TASKS_NUM_LABELS = {
"cola": 2,
"mnli": 3,
"mrpc": 2,
"sst-2": 2,
"sts-b": 1,
"qqp": 2,
"qnli": 2,
"rte": 2,
"wnli": 2,
}
def convert_xlnet_checkpoint_to_pytorch(
tf_checkpoint_path, bert_config_file, pytorch_dump_folder_path, finetuning_task=None
):
# Initialise PyTorch model
config = XLNetConfig.from_json_file(bert_config_file)
finetuning_task = finetuning_task.lower() if finetuning_task is not None else ""
if finetuning_task in GLUE_TASKS_NUM_LABELS:
print(f"Building PyTorch XLNetForSequenceClassification model from configuration: {config}")
config.finetuning_task = finetuning_task
config.num_labels = GLUE_TASKS_NUM_LABELS[finetuning_task]
model = XLNetForSequenceClassification(config)
elif "squad" in finetuning_task:
config.finetuning_task = finetuning_task
model = XLNetForQuestionAnswering(config)
else:
model = XLNetLMHeadModel(config)
# Load weights from tf checkpoint
load_tf_weights_in_xlnet(model, config, tf_checkpoint_path)
# Save pytorch-model
pytorch_weights_dump_path = os.path.join(pytorch_dump_folder_path, WEIGHTS_NAME)
pytorch_config_dump_path = os.path.join(pytorch_dump_folder_path, CONFIG_NAME)
print(f"Save PyTorch model to {os.path.abspath(pytorch_weights_dump_path)}")
torch.save(model.state_dict(), pytorch_weights_dump_path)
print(f"Save configuration file to {os.path.abspath(pytorch_config_dump_path)}")
with open(pytorch_config_dump_path, "w", encoding="utf-8") as f:
f.write(config.to_json_string()) | null |
10,908 | import argparse
import torch
from transformers import YosoConfig, YosoForMaskedLM
def convert_checkpoint_helper(max_position_embeddings, orig_state_dict):
for key in orig_state_dict.copy().keys():
val = orig_state_dict.pop(key)
if ("pooler" in key) or ("sen_class" in key):
continue
else:
orig_state_dict[rename_key(key)] = val
orig_state_dict["cls.predictions.bias"] = orig_state_dict["cls.predictions.decoder.bias"]
orig_state_dict["yoso.embeddings.position_ids"] = torch.arange(max_position_embeddings).expand((1, -1)) + 2
return orig_state_dict
def convert_yoso_checkpoint(checkpoint_path, yoso_config_file, pytorch_dump_path):
orig_state_dict = torch.load(checkpoint_path, map_location="cpu")["model_state_dict"]
config = YosoConfig.from_json_file(yoso_config_file)
model = YosoForMaskedLM(config)
new_state_dict = convert_checkpoint_helper(config.max_position_embeddings, orig_state_dict)
print(model.load_state_dict(new_state_dict))
model.eval()
model.save_pretrained(pytorch_dump_path)
print(f"Checkpoint successfuly converted. Model saved at {pytorch_dump_path}") | null |
10,909 | import math
import os
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_yoso import YosoConfig
def load_cuda_kernels():
global lsh_cumulation
try:
from torch.utils.cpp_extension import load
def append_root(files):
src_folder = os.path.dirname(os.path.realpath(__file__))
return [os.path.join(src_folder, file) for file in files]
src_files = append_root(
["fast_lsh_cumulation_torch.cpp", "fast_lsh_cumulation.cu", "fast_lsh_cumulation_cuda.cu"]
)
load("fast_lsh_cumulation", src_files, verbose=True)
import fast_lsh_cumulation as lsh_cumulation
return True
except Exception:
lsh_cumulation = None
return False | null |
10,910 | import math
import os
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_yoso import YosoConfig
def to_contiguous(input_tensors):
if isinstance(input_tensors, list):
out = []
for tensor in input_tensors:
if not tensor.is_contiguous():
tensor = tensor.contiguous()
out.append(tensor)
return out
else:
if not input_tensors.is_contiguous():
input_tensors = input_tensors.contiguous()
return input_tensors | null |
10,911 | import math
import os
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_yoso import YosoConfig
def normalize(input_tensors):
if type(input_tensors) is list:
out = []
for tensor in input_tensors:
out.append(nn.functional.normalize(tensor, p=2, dim=-1))
return out
else:
return nn.functional.normalize(input_tensors, p=2, dim=-1) | null |
10,912 | import math
import os
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_yoso import YosoConfig
def hashing(query, key, num_hash, hash_len):
if len(query.size()) != 3:
raise ValueError("Query has incorrect size.")
if len(key.size()) != 3:
raise ValueError("Key has incorrect size.")
rmat = torch.randn(query.size(0), query.size(2), num_hash * hash_len, device=query.device)
raise_pow = 2 ** torch.arange(hash_len, device=query.device)
query_projection = torch.matmul(query, rmat).reshape(query.size(0), query.size(1), num_hash, hash_len)
key_projection = torch.matmul(key, rmat).reshape(key.size(0), key.size(1), num_hash, hash_len)
query_binary = (query_projection > 0).int()
key_binary = (key_projection > 0).int()
query_hash = torch.sum(query_binary * raise_pow, dim=-1)
query_hash = torch.sum(key_binary * raise_pow, dim=-1)
return query_hash.int(), query_hash.int() | null |
10,913 | from typing import List, Optional, Union
import numpy as np
from PIL import Image
from transformers.image_utils import PILImageResampling
from ...feature_extraction_utils import BatchFeature, FeatureExtractionMixin
from ...image_utils import IMAGENET_STANDARD_MEAN, IMAGENET_STANDARD_STD, ImageFeatureExtractionMixin, is_torch_tensor
from ...utils import TensorType, is_pytesseract_available, logging, requires_backends
def normalize_box(box, width, height):
return [
int(1000 * (box[0] / width)),
int(1000 * (box[1] / height)),
int(1000 * (box[2] / width)),
int(1000 * (box[3] / height)),
]
The provided code snippet includes necessary dependencies for implementing the `apply_tesseract` function. Write a Python function `def apply_tesseract(image: Image.Image, lang: Optional[str], tesseract_config: Optional[str])` to solve the following problem:
Applies Tesseract OCR on a document image, and returns recognized words + normalized bounding boxes.
Here is the function:
def apply_tesseract(image: Image.Image, lang: Optional[str], tesseract_config: Optional[str]):
"""Applies Tesseract OCR on a document image, and returns recognized words + normalized bounding boxes."""
# apply OCR
data = pytesseract.image_to_data(image, lang=lang, output_type="dict", config=tesseract_config)
words, left, top, width, height = data["text"], data["left"], data["top"], data["width"], data["height"]
# filter empty words and corresponding coordinates
irrelevant_indices = [idx for idx, word in enumerate(words) if not word.strip()]
words = [word for idx, word in enumerate(words) if idx not in irrelevant_indices]
left = [coord for idx, coord in enumerate(left) if idx not in irrelevant_indices]
top = [coord for idx, coord in enumerate(top) if idx not in irrelevant_indices]
width = [coord for idx, coord in enumerate(width) if idx not in irrelevant_indices]
height = [coord for idx, coord in enumerate(height) if idx not in irrelevant_indices]
# turn coordinates into (left, top, left+width, top+height) format
actual_boxes = []
for x, y, w, h in zip(left, top, width, height):
actual_box = [x, y, x + w, y + h]
actual_boxes.append(actual_box)
image_width, image_height = image.size
# finally, normalize the bounding boxes
normalized_boxes = []
for box in actual_boxes:
normalized_boxes.append(normalize_box(box, image_width, image_height))
assert len(words) == len(normalized_boxes), "Not as many words as there are bounding boxes"
return words, normalized_boxes | Applies Tesseract OCR on a document image, and returns recognized words + normalized bounding boxes. |
10,914 | import json
import os
from functools import lru_cache
from typing import Dict, List, Optional, Tuple, Union
import regex as re
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...tokenization_utils_base import (
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
TextInputPair,
TruncationStrategy,
)
from ...utils import PaddingStrategy, TensorType, add_end_docstrings, logging
The provided code snippet includes necessary dependencies for implementing the `bytes_to_unicode` function. Write a Python function `def bytes_to_unicode()` to solve the following problem:
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings.
Here is the function:
def bytes_to_unicode():
"""
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control
characters the bpe code barfs on.
The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab
if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for
decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup
tables between utf-8 bytes and unicode strings.
"""
bs = (
list(range(ord("!"), ord("~") + 1)) + list(range(ord("¡"), ord("¬") + 1)) + list(range(ord("®"), ord("ÿ") + 1))
)
cs = bs[:]
n = 0
for b in range(2**8):
if b not in bs:
bs.append(b)
cs.append(2**8 + n)
n += 1
cs = [chr(n) for n in cs]
return dict(zip(bs, cs)) | Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings. |
10,915 | import json
import os
from functools import lru_cache
from typing import Dict, List, Optional, Tuple, Union
import regex as re
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...tokenization_utils_base import (
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
TextInputPair,
TruncationStrategy,
)
from ...utils import PaddingStrategy, TensorType, add_end_docstrings, logging
The provided code snippet includes necessary dependencies for implementing the `get_pairs` function. Write a Python function `def get_pairs(word)` to solve the following problem:
Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings).
Here is the function:
def get_pairs(word):
"""
Return set of symbol pairs in a word.
Word is represented as tuple of symbols (symbols being variable-length strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs | Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings). |
10,916 | import argparse
import numpy as np
import torch
import gdown
from huggingface_hub import hf_hub_download
from transformers import (
CLIPTokenizer,
CLIPTokenizerFast,
VideoMAEFeatureExtractor,
XCLIPConfig,
XCLIPModel,
XCLIPProcessor,
XCLIPTextConfig,
XCLIPVisionConfig,
)
def get_xclip_config(model_name, num_frames):
def convert_state_dict(orig_state_dict, config):
def prepare_video(num_frames):
def convert_xclip_checkpoint(model_name, pytorch_dump_folder_path=None, push_to_hub=False):
model_to_url = {
# fully supervised kinetics-400 checkpoints
"xclip-base-patch32": "https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/k400_32_8.pth",
"xclip-base-patch32-16-frames": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/k400_32_16.pth"
),
"xclip-base-patch16": "https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/k400_16_8.pth",
"xclip-base-patch16-16-frames": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/k400_16_16.pth"
),
"xclip-large-patch14": "https://drive.google.com/u/0/uc?id=1NUOImq0o5DlQTST17iIP3vG7DgmHQuCx&export=download&confirm=t&uuid=b26caedc-88e2-473e-830a-9d158b653cdb",
"xclip-large-patch14-16-frames": "https://drive.google.com/u/0/uc?id=1FOYgnJc097OJ4lGwtRCCydQyVPJEOH7d&export=download&confirm=t&uuid=538fa810-e671-4050-b385-9a623f89804f",
# fully supervised kinetics-600 checkpoints
"xclip-base-patch16-kinetics-600": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/k600_16_8.pth"
),
"xclip-base-patch16-kinetics-600-16-frames": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/k600_16_16.pth"
),
"xclip-large-patch14-kinetics-600": "https://drive.google.com/u/0/uc?id=1FV8C1INuM91sLAN4ImjzePLIlpMSihwV&export=download&confirm=t&uuid=141d4977-4a65-44ae-864f-4b0c19f838be",
# few shot
"xclip-base-patch16-hmdb-2-shot": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/few_hmdb_2.pth"
),
"xclip-base-patch16-hmdb-4-shot": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/few_hmdb_4.pth"
),
"xclip-base-patch16-hmdb-8-shot": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/few_hmdb_8.pth"
),
"xclip-base-patch16-hmdb-16-shot": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/few_hmdb_16.pth"
),
"xclip-base-patch16-ucf-2-shot": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/few_ucf_2.pth"
),
"xclip-base-patch16-ucf-4-shot": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/few_ucf_4.pth"
),
"xclip-base-patch16-ucf-8-shot": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/few_ucf_8.pth"
),
"xclip-base-patch16-ucf-16-shot": (
"https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/few_ucf_16.pth"
),
# zero shot
"xclip-base-patch16-zero-shot": "https://github.com/nbl97/X-CLIP_Model_Zoo/releases/download/v1.0/zero.pth",
}
checkpoint_url = model_to_url[model_name]
num_frames = 8
if "16-frames" in model_name:
num_frames = 16
elif "shot" in model_name:
num_frames = 32
config = get_xclip_config(model_name, num_frames)
model = XCLIPModel(config)
model.eval()
if "drive" in checkpoint_url:
output = "pytorch_model.bin"
gdown.cached_download(checkpoint_url, output, quiet=False)
state_dict = torch.load(output, map_location="cpu")["model"]
else:
state_dict = torch.hub.load_state_dict_from_url(checkpoint_url)["model"]
state_dict = convert_state_dict(state_dict, config)
model = XCLIPModel(config)
missing_keys, unexpected_keys = model.load_state_dict(state_dict, strict=False)
assert missing_keys == ["text_model.embeddings.position_ids", "vision_model.embeddings.position_ids"]
model.eval()
size = 336 if model_name == "xclip-large-patch14-16-frames" else 224
feature_extractor = VideoMAEFeatureExtractor(size=size)
slow_tokenizer = CLIPTokenizer.from_pretrained("openai/clip-vit-base-patch32")
fast_tokenizer = CLIPTokenizerFast.from_pretrained("openai/clip-vit-base-patch32")
processor = XCLIPProcessor(feature_extractor=feature_extractor, tokenizer=fast_tokenizer)
video = prepare_video(num_frames)
inputs = processor(
text=["playing sports", "eating spaghetti", "go shopping"], videos=video, return_tensors="pt", padding=True
)
print("Shape of pixel values:", inputs.pixel_values.shape)
with torch.no_grad():
outputs = model(**inputs)
# Verify outputs
logits_per_video = outputs.logits_per_video
probs = logits_per_video.softmax(dim=1)
print("Probs:", probs)
# kinetics-400
if model_name == "xclip-base-patch32":
expected_probs = torch.tensor([[0.0019, 0.9951, 0.0030]])
elif model_name == "xclip-base-patch32-16-frames":
expected_probs = torch.tensor([[7.0999e-04, 9.9883e-01, 4.5580e-04]])
elif model_name == "xclip-base-patch16":
expected_probs = torch.tensor([[0.0083, 0.9681, 0.0236]])
elif model_name == "xclip-base-patch16-16-frames":
expected_probs = torch.tensor([[7.6937e-04, 9.9728e-01, 1.9473e-03]])
elif model_name == "xclip-large-patch14":
expected_probs = torch.tensor([[0.0062, 0.9864, 0.0075]])
elif model_name == "xclip-large-patch14-16-frames":
expected_probs = torch.tensor([[3.3877e-04, 9.9937e-01, 2.8888e-04]])
# kinetics-600
elif model_name == "xclip-base-patch16-kinetics-600":
expected_probs = torch.tensor([[0.0555, 0.8914, 0.0531]])
elif model_name == "xclip-base-patch16-kinetics-600-16-frames":
expected_probs = torch.tensor([[3.8554e-04, 9.9929e-01, 3.2754e-04]])
elif model_name == "xclip-large-patch14-kinetics-600":
expected_probs = torch.tensor([[0.0036, 0.9920, 0.0045]])
# few shot
elif model_name == "xclip-base-patch16-hmdb-2-shot":
expected_probs = torch.tensor([[7.1890e-06, 9.9994e-01, 5.6559e-05]])
elif model_name == "xclip-base-patch16-hmdb-4-shot":
expected_probs = torch.tensor([[1.0320e-05, 9.9993e-01, 6.2435e-05]])
elif model_name == "xclip-base-patch16-hmdb-8-shot":
expected_probs = torch.tensor([[4.1377e-06, 9.9990e-01, 9.8386e-05]])
elif model_name == "xclip-base-patch16-hmdb-16-shot":
expected_probs = torch.tensor([[4.1347e-05, 9.9962e-01, 3.3411e-04]])
elif model_name == "xclip-base-patch16-ucf-2-shot":
expected_probs = torch.tensor([[8.5857e-05, 9.9928e-01, 6.3291e-04]])
elif model_name == "xclip-base-patch16-ucf-4-shot":
expected_probs = torch.tensor([[8.5857e-05, 9.9928e-01, 6.3291e-04]])
elif model_name == "xclip-base-patch16-ucf-8-shot":
expected_probs = torch.tensor([[0.0027, 0.9904, 0.0070]])
elif model_name == "xclip-base-patch16-ucf-16-shot":
expected_probs = torch.tensor([[9.8219e-04, 9.9593e-01, 3.0863e-03]])
# zero shot
elif model_name == "xclip-base-patch16-zero-shot":
expected_probs = torch.tensor([[3.5082e-04, 9.9785e-01, 1.7966e-03]])
else:
raise ValueError(f"Model name {model_name} not supported")
assert torch.allclose(probs, expected_probs, atol=1e-3)
print("Looks ok!")
if pytorch_dump_folder_path is not None:
print(f"Saving model {model_name} to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
print("Pushing model, processor and slow tokenizer files to the hub...")
model.push_to_hub(model_name, organization="nielsr")
processor.push_to_hub(model_name, organization="nielsr")
slow_tokenizer.push_to_hub(model_name, organization="nielsr") | null |
10,917 | from copy import copy
from dataclasses import dataclass
from typing import Any, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithPooling
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_x_clip import XCLIPConfig, XCLIPTextConfig, XCLIPVisionConfig
The provided code snippet includes necessary dependencies for implementing the `_expand_mask` function. Write a Python function `def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None)` to solve the following problem:
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
Here is the function:
def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
bsz, src_len = mask.size()
tgt_len = tgt_len if tgt_len is not None else src_len
expanded_mask = mask[:, None, None, :].expand(bsz, 1, tgt_len, src_len).to(dtype)
inverted_mask = 1.0 - expanded_mask
return inverted_mask.masked_fill(inverted_mask.to(torch.bool), torch.finfo(dtype).min) | Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`. |
10,918 | from copy import copy
from dataclasses import dataclass
from typing import Any, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithPooling
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_x_clip import XCLIPConfig, XCLIPTextConfig, XCLIPVisionConfig
def contrastive_loss(logits: torch.Tensor) -> torch.Tensor:
def x_clip_loss(similarity: torch.Tensor) -> torch.Tensor:
caption_loss = contrastive_loss(similarity)
image_loss = contrastive_loss(similarity.t())
return (caption_loss + image_loss) / 2.0 | null |
10,919 | from copy import copy
from dataclasses import dataclass
from typing import Any, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, BaseModelOutputWithPooling
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_x_clip import XCLIPConfig, XCLIPTextConfig, XCLIPVisionConfig
The provided code snippet includes necessary dependencies for implementing the `drop_path` function. Write a Python function `def drop_path(input, drop_prob: float = 0.0, training: bool = False)` to solve the following problem:
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks, however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper... See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the argument.
Here is the function:
def drop_path(input, drop_prob: float = 0.0, training: bool = False):
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output | Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks, however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper... See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the argument. |
10,920 | import math
import os
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.cuda.amp import autocast
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithPastAndCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import Conv1D, find_pruneable_heads_and_indices, prune_conv1d_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_decision_transformer import DecisionTransformerConfig
logger = logging.get_logger(__name__)
The provided code snippet includes necessary dependencies for implementing the `load_tf_weights_in_gpt2` function. Write a Python function `def load_tf_weights_in_gpt2(model, config, gpt2_checkpoint_path)` to solve the following problem:
Load tf checkpoints in a pytorch model
Here is the function:
def load_tf_weights_in_gpt2(model, config, gpt2_checkpoint_path):
"""Load tf checkpoints in a pytorch model"""
try:
import re
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(gpt2_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array.squeeze())
for name, array in zip(names, arrays):
name = name[6:] # skip "model/"
name = name.split("/")
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+\d+", m_name):
scope_names = re.split(r"(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "w" or scope_names[0] == "g":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "b":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "wpe" or scope_names[0] == "wte":
pointer = getattr(pointer, scope_names[0])
pointer = getattr(pointer, "weight")
else:
pointer = getattr(pointer, scope_names[0])
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
try:
assert (
pointer.shape == array.shape
), f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched"
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model | Load tf checkpoints in a pytorch model |
10,921 | import argparse
import collections
from pathlib import Path
import torch
from torch.serialization import default_restore_location
from .transformers import BertConfig, DPRConfig, DPRContextEncoder, DPRQuestionEncoder, DPRReader
CheckpointState = collections.namedtuple(
"CheckpointState", ["model_dict", "optimizer_dict", "scheduler_dict", "offset", "epoch", "encoder_params"]
)
def load_states_from_checkpoint(model_file: str) -> CheckpointState:
print(f"Reading saved model from {model_file}")
state_dict = torch.load(model_file, map_location=lambda s, l: default_restore_location(s, "cpu"))
return CheckpointState(**state_dict) | null |
10,922 | import argparse
import collections
from pathlib import Path
import torch
from torch.serialization import default_restore_location
from .transformers import BertConfig, DPRConfig, DPRContextEncoder, DPRQuestionEncoder, DPRReader
class DPRState:
def __init__(self, src_file: Path):
self.src_file = src_file
def load_dpr_model(self):
raise NotImplementedError
def from_type(comp_type: str, *args, **kwargs) -> "DPRState":
if comp_type.startswith("c"):
return DPRContextEncoderState(*args, **kwargs)
if comp_type.startswith("q"):
return DPRQuestionEncoderState(*args, **kwargs)
if comp_type.startswith("r"):
return DPRReaderState(*args, **kwargs)
else:
raise ValueError("Component type must be either 'ctx_encoder', 'question_encoder' or 'reader'.")
def convert(comp_type: str, src_file: Path, dest_dir: Path):
dest_dir = Path(dest_dir)
dest_dir.mkdir(exist_ok=True)
dpr_state = DPRState.from_type(comp_type, src_file=src_file)
model = dpr_state.load_dpr_model()
model.save_pretrained(dest_dir)
model.from_pretrained(dest_dir) # sanity check | null |
10,923 | import argparse
import fairseq
import torch
from torch import nn
from transformers import (
MBart50Tokenizer,
MBartConfig,
MBartForCausalLM,
SpeechEncoderDecoderConfig,
SpeechEncoderDecoderModel,
Wav2Vec2Config,
Wav2Vec2FeatureExtractor,
Wav2Vec2Model,
logging,
)
def make_linear_from_emb(emb):
vocab_size, emb_size = emb.weight.shape
lin_layer = nn.Linear(vocab_size, emb_size, bias=False)
lin_layer.weight.data = emb.weight.data
return lin_layer | null |
10,924 | import argparse
import fairseq
import torch
from torch import nn
from transformers import (
MBart50Tokenizer,
MBartConfig,
MBartForCausalLM,
SpeechEncoderDecoderConfig,
SpeechEncoderDecoderModel,
Wav2Vec2Config,
Wav2Vec2FeatureExtractor,
Wav2Vec2Model,
logging,
)
logger = logging.get_logger(__name__)
def recursively_load_weights_wav2vec2(fairseq_model, hf_model):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
feature_extractor = hf_model.feature_extractor
adapter = hf_model.adapter
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
elif any(x in name for x in ["adaptor", "w2v_encoder.proj.", "w2v_proj_ln."]):
load_adapter(name, value, adapter, unused_weights)
is_used = True
else:
for key, mapped_key in MAPPING.items():
if key in name or key.split("w2v_model.")[-1] == name.split(".")[0]:
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "bias" in name:
weight_type = "bias"
elif "weight" in name:
weight_type = "weight"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
The provided code snippet includes necessary dependencies for implementing the `convert_wav2vec2_checkpoint` function. Write a Python function `def convert_wav2vec2_checkpoint( checkpoint_path, pytorch_dump_folder_path, dict_path, config_yaml_path, encoder_config_path, decoder_config_path, add_adapter, adapter_kernel_size, adapter_stride, decoder_start_token_id, encoder_output_dim, )` to solve the following problem:
Copy/paste/tweak model's weights to transformers design.
Here is the function:
def convert_wav2vec2_checkpoint(
checkpoint_path,
pytorch_dump_folder_path,
dict_path,
config_yaml_path,
encoder_config_path,
decoder_config_path,
add_adapter,
adapter_kernel_size,
adapter_stride,
decoder_start_token_id,
encoder_output_dim,
):
"""
Copy/paste/tweak model's weights to transformers design.
"""
# load configs
encoder_config = Wav2Vec2Config.from_pretrained(
encoder_config_path,
add_adapter=True,
adapter_stride=adapter_stride,
adapter_kernel_size=adapter_kernel_size,
use_auth_token=True,
output_hidden_size=encoder_output_dim,
)
decoder_config = MBartConfig.from_pretrained(decoder_config_path)
# load model
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task(
[checkpoint_path],
arg_overrides={
"config_yaml": config_yaml_path,
"data": "/".join(dict_path.split("/")[:-1]),
"w2v_path": checkpoint_path,
"load_pretrained_decoder_from": None,
},
)
model = model[0].eval()
# load feature extractor
feature_extractor = Wav2Vec2FeatureExtractor.from_pretrained(encoder_config_path, use_auth_token=True)
# set weights for wav2vec2 encoder
hf_encoder = Wav2Vec2Model(encoder_config)
recursively_load_weights_wav2vec2(model.encoder, hf_encoder)
# load decoder weights
hf_decoder = MBartForCausalLM(decoder_config)
missing_keys, unexpected_keys = hf_decoder.model.decoder.load_state_dict(model.decoder.state_dict(), strict=False)
logger.warning(f"The following keys are missing when loading the decoder weights: {missing_keys}")
logger.warning(f"The following keys are unexpected when loading the decoder weights: {unexpected_keys}")
hf_wav2vec = SpeechEncoderDecoderModel(encoder=hf_encoder, decoder=hf_decoder)
hf_wav2vec.config.tie_word_embeddings = False
tokenizer = MBart50Tokenizer(dict_path)
tokenizer.save_pretrained(pytorch_dump_folder_path)
config = hf_wav2vec.config.to_dict()
config["pad_token_id"] = tokenizer.pad_token_id
config["bos_token_id"] = tokenizer.bos_token_id
config["eos_token_id"] = tokenizer.eos_token_id
config["tokenizer_class"] = "mbart50"
config["feature_extractor_type"] = "wav2vec2"
config["decoder_start_token_id"] = tokenizer.eos_token_id
config["forced_bos_token_id"] = 250004
config["forced_eos_token_id"] = tokenizer.eos_token_id
hf_wav2vec.config = SpeechEncoderDecoderConfig.from_dict(config)
hf_wav2vec.save_pretrained(pytorch_dump_folder_path)
feature_extractor.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to transformers design. |
10,925 | from typing import Optional
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from ...configuration_utils import PretrainedConfig
from ...modeling_outputs import BaseModelOutput, Seq2SeqLMOutput
from ...modeling_utils import PreTrainedModel
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from ..auto.configuration_auto import AutoConfig
from ..auto.modeling_auto import AutoModel, AutoModelForCausalLM
from .configuration_speech_encoder_decoder import SpeechEncoderDecoderConfig
The provided code snippet includes necessary dependencies for implementing the `shift_tokens_right` function. Write a Python function `def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int, decoder_start_token_id: int)` to solve the following problem:
Shift input ids one token to the right.
Here is the function:
def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int, decoder_start_token_id: int):
"""
Shift input ids one token to the right.
"""
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[:, 1:] = input_ids[:, :-1].clone()
if decoder_start_token_id is None:
raise ValueError("Make sure to set the decoder_start_token_id attribute of the model's configuration.")
shifted_input_ids[:, 0] = decoder_start_token_id
if pad_token_id is None:
raise ValueError("Make sure to set the pad_token_id attribute of the model's configuration.")
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids.masked_fill_(shifted_input_ids == -100, pad_token_id)
return shifted_input_ids | Shift input ids one token to the right. |
10,926 | import argparse
import json
import os
import fairseq
import torch
from torch import nn
from transformers import (
Speech2Text2Config,
Speech2Text2ForCausalLM,
Speech2Text2Tokenizer,
SpeechEncoderDecoderConfig,
SpeechEncoderDecoderModel,
Wav2Vec2Config,
Wav2Vec2FeatureExtractor,
Wav2Vec2Model,
logging,
)
def make_linear_from_emb(emb):
vocab_size, emb_size = emb.weight.shape
lin_layer = nn.Linear(vocab_size, emb_size, bias=False)
lin_layer.weight.data = emb.weight.data
return lin_layer | null |
10,927 | import argparse
import json
import os
import fairseq
import torch
from torch import nn
from transformers import (
Speech2Text2Config,
Speech2Text2ForCausalLM,
Speech2Text2Tokenizer,
SpeechEncoderDecoderConfig,
SpeechEncoderDecoderModel,
Wav2Vec2Config,
Wav2Vec2FeatureExtractor,
Wav2Vec2Model,
logging,
)
logger = logging.get_logger(__name__)
def recursively_load_weights_wav2vec2(fairseq_model, hf_model):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
feature_extractor = hf_model.feature_extractor
# if encoder has different dim to decoder -> use proj_weight
proj_weight = None
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
elif name.split(".")[0] == "proj":
proj_weight = fairseq_model.proj
is_used = True
else:
for key, mapped_key in MAPPING.items():
if key in name or key.split("w2v_model.")[-1] == name.split(".")[0]:
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "bias" in name:
weight_type = "bias"
elif "weight" in name:
weight_type = "weight"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
return proj_weight
def create_vocab_dict(dict_path):
with open(dict_path, "r", encoding="utf-8") as f:
lines = f.readlines()
words = [line.split(" ")[0] for line in lines]
num_words = len(words)
vocab_dict = {
"<s>": 0,
"<pad>": 1,
"</s>": 2,
"<unk>": 3,
}
vocab_dict.update({k: v for k, v in zip(words, range(4, num_words + 4))})
return vocab_dict
The provided code snippet includes necessary dependencies for implementing the `convert_wav2vec2_checkpoint` function. Write a Python function `def convert_wav2vec2_checkpoint( checkpoint_path, pytorch_dump_folder_path, dict_path, encoder_config_path, decoder_config_path, vocab_size, num_decoder_layers, )` to solve the following problem:
Copy/paste/tweak model's weights to transformers design.
Here is the function:
def convert_wav2vec2_checkpoint(
checkpoint_path,
pytorch_dump_folder_path,
dict_path,
encoder_config_path,
decoder_config_path,
vocab_size,
num_decoder_layers,
):
"""
Copy/paste/tweak model's weights to transformers design.
"""
encoder_config = Wav2Vec2Config.from_pretrained(encoder_config_path)
decoder_config = Speech2Text2Config.from_pretrained(
decoder_config_path, vocab_size=vocab_size, decoder_layers=num_decoder_layers, do_stable_layer_norm=True
)
feature_extractor = Wav2Vec2FeatureExtractor(
feature_size=1,
sampling_rate=16000,
padding_value=0,
do_normalize=True,
return_attention_mask=True,
)
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task(
[checkpoint_path], arg_overrides={"data": "/".join(dict_path.split("/")[:-1])}
)
model = model[0].eval()
# set weights for wav2vec2 encoder
hf_encoder = Wav2Vec2Model(encoder_config)
projection_layer = recursively_load_weights_wav2vec2(model.encoder, hf_encoder)
hf_decoder = Speech2Text2ForCausalLM(decoder_config)
missing_keys, unexpected_keys = hf_decoder.model.decoder.load_state_dict(model.decoder.state_dict(), strict=False)
# set output linear layer
unexpected_keys.remove("embed_out")
hf_decoder.lm_head.weight = nn.Parameter(model.decoder.embed_out.detach())
# layer norm is init to identity matrix so leaving it is fine
logger.warning(f"The following keys are missing when loading the decoder weights: {missing_keys}")
logger.warning(f"The following keys are unexpected when loading the decoder weights: {unexpected_keys}")
hf_wav2vec = SpeechEncoderDecoderModel(encoder=hf_encoder, decoder=hf_decoder)
hf_wav2vec.config.tie_word_embeddings = False
# add projection layer
hf_wav2vec.enc_to_dec_proj.weight = nn.Parameter(projection_layer.weight)
hf_wav2vec.enc_to_dec_proj.bias = nn.Parameter(projection_layer.bias)
vocab_dict = create_vocab_dict(dict_path)
with open(os.path.join(pytorch_dump_folder_path, "vocab.json"), "w") as fp:
json.dump(vocab_dict, fp)
tokenizer = Speech2Text2Tokenizer(os.path.join(pytorch_dump_folder_path, "vocab.json"))
tokenizer.save_pretrained(pytorch_dump_folder_path)
config = hf_wav2vec.config.to_dict()
config["pad_token_id"] = tokenizer.pad_token_id
config["bos_token_id"] = tokenizer.bos_token_id
config["eos_token_id"] = tokenizer.eos_token_id
config["tokenizer_class"] = "speech_to_text_2"
config["feature_extractor_type"] = "wav2vec2"
hf_wav2vec.config = SpeechEncoderDecoderConfig.from_dict(config)
hf_wav2vec.save_pretrained(pytorch_dump_folder_path)
feature_extractor.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to transformers design. |
10,928 | import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN, gelu
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_camembert import CamembertConfig
The provided code snippet includes necessary dependencies for implementing the `create_position_ids_from_input_ids` function. Write a Python function `def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0)` to solve the following problem:
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: torch.Tensor x: Returns: torch.Tensor
Here is the function:
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx | Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: torch.Tensor x: Returns: torch.Tensor |
10,929 | import argparse
import torch
from transformers import HubertConfig, HubertForSequenceClassification, Wav2Vec2FeatureExtractor, logging
SUPPORTED_MODELS = ["UtteranceLevel"]
The provided code snippet includes necessary dependencies for implementing the `convert_s3prl_checkpoint` function. Write a Python function `def convert_s3prl_checkpoint(base_model_name, config_path, checkpoint_path, model_dump_path)` to solve the following problem:
Copy/paste/tweak model's weights to transformers design.
Here is the function:
def convert_s3prl_checkpoint(base_model_name, config_path, checkpoint_path, model_dump_path):
"""
Copy/paste/tweak model's weights to transformers design.
"""
checkpoint = torch.load(checkpoint_path, map_location="cpu")
if checkpoint["Config"]["downstream_expert"]["modelrc"]["select"] not in SUPPORTED_MODELS:
raise NotImplementedError(f"The supported s3prl models are {SUPPORTED_MODELS}")
downstream_dict = checkpoint["Downstream"]
hf_congfig = HubertConfig.from_pretrained(config_path)
hf_model = HubertForSequenceClassification.from_pretrained(base_model_name, config=hf_congfig)
hf_feature_extractor = Wav2Vec2FeatureExtractor.from_pretrained(
base_model_name, return_attention_mask=True, do_normalize=False
)
if hf_congfig.use_weighted_layer_sum:
hf_model.layer_weights.data = checkpoint["Featurizer"]["weights"]
hf_model.projector.weight.data = downstream_dict["projector.weight"]
hf_model.projector.bias.data = downstream_dict["projector.bias"]
hf_model.classifier.weight.data = downstream_dict["model.post_net.linear.weight"]
hf_model.classifier.bias.data = downstream_dict["model.post_net.linear.bias"]
hf_feature_extractor.save_pretrained(model_dump_path)
hf_model.save_pretrained(model_dump_path) | Copy/paste/tweak model's weights to transformers design. |
10,930 | import warnings
from typing import Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from transformers.deepspeed import is_deepspeed_zero3_enabled
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, CausalLMOutput, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import torch_int_div
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_hubert import HubertConfig
The provided code snippet includes necessary dependencies for implementing the `_compute_mask_indices` function. Write a Python function `def _compute_mask_indices( shape: Tuple[int, int], mask_prob: float, mask_length: int, attention_mask: Optional[torch.LongTensor] = None, min_masks: int = 0, ) -> np.ndarray` to solve the following problem:
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on CPU as part of the preprocessing during training. Args: shape: The shape for which to compute masks. This should be of a tuple of size 2 where the first element is the batch size and the second element is the length of the axis to span. mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of independently generated mask spans of length `mask_length` is computed by `mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the actual percentage will be smaller. mask_length: size of the mask min_masks: minimum number of masked spans attention_mask: A (right-padded) attention mask which independently shortens the feature axis of each batch dimension.
Here is the function:
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
attention_mask: Optional[torch.LongTensor] = None,
min_masks: int = 0,
) -> np.ndarray:
"""
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for
ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on
CPU as part of the preprocessing during training.
Args:
shape: The shape for which to compute masks. This should be of a tuple of size 2 where
the first element is the batch size and the second element is the length of the axis to span.
mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of
independently generated mask spans of length `mask_length` is computed by
`mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the
actual percentage will be smaller.
mask_length: size of the mask
min_masks: minimum number of masked spans
attention_mask: A (right-padded) attention mask which independently shortens the feature axis of
each batch dimension.
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length}"
f" and `sequence_length`: {sequence_length}`"
)
# epsilon is used for probabilistic rounding
epsilon = np.random.rand(1).item()
def compute_num_masked_span(input_length):
"""Given input length, compute how many spans should be masked"""
num_masked_span = int(mask_prob * input_length / mask_length + epsilon)
num_masked_span = max(num_masked_span, min_masks)
# make sure num masked span <= sequence_length
if num_masked_span * mask_length > sequence_length:
num_masked_span = sequence_length // mask_length
# make sure num_masked span is also <= input_length - (mask_length - 1)
if input_length - (mask_length - 1) < num_masked_span:
num_masked_span = max(input_length - (mask_length - 1), 0)
return num_masked_span
# compute number of masked spans in batch
input_lengths = (
attention_mask.sum(-1).detach().tolist()
if attention_mask is not None
else [sequence_length for _ in range(batch_size)]
)
# SpecAugment mask to fill
spec_aug_mask = np.zeros((batch_size, sequence_length), dtype=bool)
spec_aug_mask_idxs = []
max_num_masked_span = compute_num_masked_span(sequence_length)
if max_num_masked_span == 0:
return spec_aug_mask
for input_length in input_lengths:
# compute num of masked spans for this input
num_masked_span = compute_num_masked_span(input_length)
# get random indices to mask
spec_aug_mask_idx = np.random.choice(
np.arange(input_length - (mask_length - 1)), num_masked_span, replace=False
)
# pick first sampled index that will serve as a dummy index to pad vector
# to ensure same dimension for all batches due to probabilistic rounding
# Picking first sample just pads those vectors twice.
if len(spec_aug_mask_idx) == 0:
# this case can only happen if `input_length` is strictly smaller then
# `sequence_length` in which case the last token has to be a padding
# token which we can use as a dummy mask id
dummy_mask_idx = sequence_length - 1
else:
dummy_mask_idx = spec_aug_mask_idx[0]
spec_aug_mask_idx = np.concatenate(
[spec_aug_mask_idx, np.ones(max_num_masked_span - num_masked_span, dtype=np.int32) * dummy_mask_idx]
)
spec_aug_mask_idxs.append(spec_aug_mask_idx)
spec_aug_mask_idxs = np.array(spec_aug_mask_idxs)
# expand masked indices to masked spans
spec_aug_mask_idxs = np.broadcast_to(
spec_aug_mask_idxs[:, :, None], (batch_size, max_num_masked_span, mask_length)
)
spec_aug_mask_idxs = spec_aug_mask_idxs.reshape(batch_size, max_num_masked_span * mask_length)
# add offset to the starting indexes so that indexes now create a span
offsets = np.arange(mask_length)[None, None, :]
offsets = np.broadcast_to(offsets, (batch_size, max_num_masked_span, mask_length)).reshape(
batch_size, max_num_masked_span * mask_length
)
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# ensure that we cannot have indices larger than sequence_length
if spec_aug_mask_idxs.max() > sequence_length - 1:
spec_aug_mask_idxs[spec_aug_mask_idxs > sequence_length - 1] = sequence_length - 1
# scatter indices to mask
np.put_along_axis(spec_aug_mask, spec_aug_mask_idxs, 1, -1)
return spec_aug_mask | Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on CPU as part of the preprocessing during training. Args: shape: The shape for which to compute masks. This should be of a tuple of size 2 where the first element is the batch size and the second element is the length of the axis to span. mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of independently generated mask spans of length `mask_length` is computed by `mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the actual percentage will be smaller. mask_length: size of the mask min_masks: minimum number of masked spans attention_mask: A (right-padded) attention mask which independently shortens the feature axis of each batch dimension. |
10,931 | import argparse
import torch
from s3prl.hub import distilhubert
from transformers import HubertConfig, HubertModel, Wav2Vec2FeatureExtractor, logging
def recursively_load_weights(fairseq_model, hf_model):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
feature_extractor = hf_model.feature_extractor
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
else:
for key, mapped_key in MAPPING.items():
mapped_key = mapped_key
if key in name:
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "weight" in name:
weight_type = "weight"
elif "bias" in name:
weight_type = "bias"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
def convert_config(model):
config = HubertConfig()
fs_config = model.config
config.activation_dropout = fs_config.activation_dropout
config.apply_spec_augment = False
config.attention_dropout = fs_config.attention_dropout
config.conv_bias = False
conv_layers = eval(fs_config.extractor_conv_feature_layers)
config.conv_dim = [x[0] for x in conv_layers]
config.conv_kernel = [x[1] for x in conv_layers]
config.conv_stride = [x[2] for x in conv_layers]
config.feat_extract_activation = "gelu"
config.feat_extract_norm = "layer" if fs_config.extractor_mode == "layer_norm" else "group"
config.feat_proj_layer_norm = False
config.feat_proj_dropout = 0.0
config.final_dropout = 0.0
config.hidden_act = fs_config.activation_fn
config.hidden_dropout = fs_config.dropout
config.hidden_size = fs_config.encoder_embed_dim
config.initializer_range = 0.02
config.intermediate_size = fs_config.encoder_ffn_embed_dim
config.layer_norm_eps = 1e-5
config.layerdrop = 0.0
config.num_attention_heads = fs_config.encoder_attention_heads
config.num_conv_pos_embedding_groups = fs_config.conv_pos_groups
config.num_conv_pos_embeddings = fs_config.conv_pos
config.num_feat_extract_layers = len(conv_layers)
config.num_hidden_layers = fs_config.encoder_layers
return config
The provided code snippet includes necessary dependencies for implementing the `convert_hubert_checkpoint` function. Write a Python function `def convert_hubert_checkpoint(pytorch_dump_folder_path, config_path=None)` to solve the following problem:
Copy/paste/tweak model's weights to transformers design.
Here is the function:
def convert_hubert_checkpoint(pytorch_dump_folder_path, config_path=None):
"""
Copy/paste/tweak model's weights to transformers design.
"""
model = distilhubert().model.model
if config_path is not None:
config = HubertConfig.from_pretrained(config_path)
else:
config = convert_config(model)
model = model.eval()
feature_extractor = Wav2Vec2FeatureExtractor(
feature_size=1,
sampling_rate=16000,
padding_value=0,
do_normalize=False,
return_attention_mask=False,
)
hf_model = HubertModel(config)
recursively_load_weights(model, hf_model)
feature_extractor.save_pretrained(pytorch_dump_folder_path)
hf_model.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to transformers design. |
10,932 | import inspect
import warnings
from collections.abc import Mapping
from typing import Any, Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput
from ...modeling_tf_utils import TFPreTrainedModel, booleans_processing, get_initializer, keras_serializable
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_hubert import HubertConfig
logger = logging.get_logger(__name__)
def booleans_processing(config, **kwargs):
"""
Process the input booleans of each model.
Args:
config ([`PretrainedConfig`]):
The config of the running model.
**kwargs:
The boolean parameters
Returns:
A dictionary with the proper values for each boolean
"""
final_booleans = {}
# Pure conv models (such as ConvNext) do not have `output_attentions`. If the signature has
# `output_attentions`, it will be present here in `kwargs`, even if unset (in that case, as `None`)
if "output_attentions" in kwargs:
final_booleans["output_attentions"] = (
kwargs["output_attentions"] if kwargs["output_attentions"] is not None else config.output_attentions
)
final_booleans["output_hidden_states"] = (
kwargs["output_hidden_states"] if kwargs["output_hidden_states"] is not None else config.output_hidden_states
)
final_booleans["return_dict"] = kwargs["return_dict"] if kwargs["return_dict"] is not None else config.return_dict
if "use_cache" in kwargs:
final_booleans["use_cache"] = (
kwargs["use_cache"] if kwargs["use_cache"] is not None else getattr(config, "use_cache", None)
)
return final_booleans
The provided code snippet includes necessary dependencies for implementing the `input_values_processing` function. Write a Python function `def input_values_processing(func, config, input_values, **kwargs)` to solve the following problem:
Process the input of each TensorFlow model including the booleans. In case of a list of symbolic inputs, each input has to be named accordingly to the parameters name, i.e. `input_values = tf.keras.Input(shape=(128,), dtype='float32', name="input_values")` otherwise the order of the tensors will not be guaranteed during the training. Args: func (`callable`): The callable function of the TensorFlow model. config ([`PretrainedConfig`]): The config of the running model. **kwargs: The inputs of the model. Returns: Two lists, one for the missing layers, and another one for the unexpected layers.
Here is the function:
def input_values_processing(func, config, input_values, **kwargs):
"""
Process the input of each TensorFlow model including the booleans. In case of a list of symbolic inputs, each input
has to be named accordingly to the parameters name, i.e. `input_values = tf.keras.Input(shape=(128,),
dtype='float32', name="input_values")` otherwise the order of the tensors will not be guaranteed during the
training.
Args:
func (`callable`):
The callable function of the TensorFlow model.
config ([`PretrainedConfig`]):
The config of the running model.
**kwargs:
The inputs of the model.
Returns:
Two lists, one for the missing layers, and another one for the unexpected layers.
"""
signature = dict(inspect.signature(func).parameters)
signature.pop("kwargs", None)
signature.pop("self", None)
parameter_names = list(signature.keys())
output = {}
allowed_types = (tf.Tensor, bool, int, ModelOutput, tuple, list, dict, np.ndarray)
for k, v in kwargs.items():
if isinstance(v, allowed_types) or v is None:
output[k] = v
else:
raise ValueError(f"Data of type {type(v)} is not allowed only {allowed_types} is accepted for {k}.")
if isinstance(input_values, (tuple, list)):
for i, input in enumerate(input_values):
# EagerTensors don't allow to use the .name property so we check for a real Tensor
if type(input) == tf.Tensor:
# Tensor names have always the pattern `name:id` then we check only the
# `name` part
tensor_name = input.name.split(":")[0]
if tensor_name in parameter_names:
output[tensor_name] = input
else:
output[parameter_names[i]] = input
elif isinstance(input, allowed_types) or input is None:
output[parameter_names[i]] = input
else:
raise ValueError(
f"Data of type {type(input)} is not allowed only {allowed_types} is accepted for"
f" {parameter_names[i]}."
)
elif isinstance(input_values, Mapping):
if "inputs" in input_values:
warnings.warn(
"The `inputs` argument is deprecated and will be removed in a future version, use `input_values`"
" instead.",
FutureWarning,
)
output["input_values"] = input_values.pop("inputs")
if "decoder_cached_states" in input_values:
warnings.warn(
"The `decoder_cached_states` argument is deprecated and will be removed in a future version, use"
" `past_key_values` instead.",
FutureWarning,
)
output["past_key_values"] = input_values.pop("decoder_cached_states")
for k, v in dict(input_values).items():
if isinstance(v, allowed_types) or v is None:
output[k] = v
elif k not in parameter_names and "args" not in parameter_names:
logger.warning(
f"The parameter {k} does not belongs to the parameter list {parameter_names} and will be ignored."
)
continue
else:
raise ValueError(f"Data of type {type(v)} is not allowed only {allowed_types} is accepted for {k}.")
else:
if isinstance(input_values, tf.Tensor) or input_values is None:
output[parameter_names[0]] = input_values
else:
raise ValueError(
f"Data of type {type(input_values)} is not allowed only {allowed_types} is accepted for"
f" {parameter_names[0]}."
)
for name in parameter_names:
if name not in list(output.keys()) and name != "args":
output[name] = kwargs.pop(name, signature[name].default)
# When creating a SavedModel TF calls the method with LayerCall.__call__(args, **kwargs)
# So to respect the proper output we have to add this exception
if "args" in output:
if output["args"] is not None and type(output["args"]) == tf.Tensor:
tensor_name = output["args"].name.split(":")[0]
output[tensor_name] = output["args"]
else:
# `args` in this case is always the first parameter, then `input_values`
output["input_values"] = output["args"]
del output["args"]
if "kwargs" in output:
del output["kwargs"]
boolean_dict = {
k: v
for k, v in output.items()
if k in ["return_dict", "output_attentions", "output_hidden_states", "use_cache"]
}
output.update(booleans_processing(config=config, **boolean_dict))
return output | Process the input of each TensorFlow model including the booleans. In case of a list of symbolic inputs, each input has to be named accordingly to the parameters name, i.e. `input_values = tf.keras.Input(shape=(128,), dtype='float32', name="input_values")` otherwise the order of the tensors will not be guaranteed during the training. Args: func (`callable`): The callable function of the TensorFlow model. config ([`PretrainedConfig`]): The config of the running model. **kwargs: The inputs of the model. Returns: Two lists, one for the missing layers, and another one for the unexpected layers. |
10,933 | import inspect
import warnings
from collections.abc import Mapping
from typing import Any, Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput
from ...modeling_tf_utils import TFPreTrainedModel, booleans_processing, get_initializer, keras_serializable
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_hubert import HubertConfig
def _sample_without_replacement(distribution, num_samples):
"""
Categorical sampling without replacement is currently not implemented. The gumbel-max trick will do for now - see
https://github.com/tensorflow/tensorflow/issues/9260 for more info
"""
z = -tf.math.log(tf.random.uniform(shape_list(distribution), 0, 1))
_, indices = tf.nn.top_k(distribution + z, num_samples)
return indices
def _scatter_values_on_batch_indices(values, batch_indices, output_shape):
"""
Scatter function as in PyTorch with indices in format (batch_dim, indixes)
"""
indices_shape = shape_list(batch_indices)
# broadcast batch dim to indices_shape
broad_casted_batch_dims = tf.reshape(
tf.broadcast_to(tf.expand_dims(tf.range(indices_shape[0]), axis=-1), indices_shape), [1, -1]
)
# transform batch_indices to pair_indices
pair_indices = tf.transpose(tf.concat([broad_casted_batch_dims, tf.reshape(batch_indices, [1, -1])], 0))
# scatter values to pair indices
return tf.scatter_nd(pair_indices, tf.reshape(values, [-1]), output_shape)
The provided code snippet includes necessary dependencies for implementing the `_compute_mask_indices` function. Write a Python function `def _compute_mask_indices( shape: Tuple[int, int], mask_prob: float, mask_length: int, min_masks: int = 0, ) -> tf.Tensor` to solve the following problem:
Computes random mask spans for a given shape Args: shape: the shape for which to compute masks. should be of size 2 where first element is batch size and 2nd is timesteps attention_mask: optional padding mask of the same size as shape, which will prevent masking padded elements mask_prob: probability for each token to be chosen as start of the span to be masked. this will be multiplied by number of timesteps divided by length of mask span to mask approximately this percentage of all elements. however due to overlaps, the actual number will be smaller (unless no_overlap is True) mask_length: size of the mask min_masks: minimum number of masked spans Adapted from [fairseq's data_utils.py](https://github.com/pytorch/fairseq/blob/e0788f7007a8473a76db573985031f3c94201e79/fairseq/data/data_utils.py#L376).
Here is the function:
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
min_masks: int = 0,
) -> tf.Tensor:
"""
Computes random mask spans for a given shape
Args:
shape: the shape for which to compute masks.
should be of size 2 where first element is batch size and 2nd is timesteps
attention_mask: optional padding mask of the same size as shape, which will prevent masking padded elements
mask_prob:
probability for each token to be chosen as start of the span to be masked. this will be multiplied by
number of timesteps divided by length of mask span to mask approximately this percentage of all elements.
however due to overlaps, the actual number will be smaller (unless no_overlap is True)
mask_length: size of the mask
min_masks: minimum number of masked spans
Adapted from [fairseq's
data_utils.py](https://github.com/pytorch/fairseq/blob/e0788f7007a8473a76db573985031f3c94201e79/fairseq/data/data_utils.py#L376).
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length} and"
f" `sequence_length`: {sequence_length}`"
)
# compute number of masked spans in batch
num_masked_spans = mask_prob * sequence_length / mask_length + tf.random.uniform((1,))
num_masked_spans = tf.maximum(num_masked_spans, min_masks)
num_masked_spans = tf.cast(num_masked_spans, tf.int32)
# make sure num masked indices <= sequence_length
num_masked_spans = tf.math.minimum(sequence_length // mask_length, num_masked_spans)
num_masked_spans = tf.squeeze(num_masked_spans)
# SpecAugment mask to fill
spec_aug_mask = tf.zeros((batch_size, sequence_length), dtype=tf.int32)
# uniform distribution to sample from, make sure that offset samples are < sequence_length
uniform_dist = tf.ones((batch_size, sequence_length - (mask_length - 1)))
# get random indices to mask
spec_aug_mask_idxs = _sample_without_replacement(uniform_dist, num_masked_spans)
# expand masked indices to masked spans
spec_aug_mask_idxs = tf.expand_dims(spec_aug_mask_idxs, -1)
spec_aug_mask_idxs = tf.tile(spec_aug_mask_idxs, (1, 1, mask_length))
spec_aug_mask_idxs = tf.reshape(spec_aug_mask_idxs, (batch_size, num_masked_spans * mask_length))
offsets = tf.range(mask_length)[tf.newaxis, tf.newaxis, :]
offsets = tf.tile(offsets, (batch_size, num_masked_spans, 1))
offsets = tf.reshape(offsets, (batch_size, num_masked_spans * mask_length))
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# scatter indices to mask
spec_aug_mask = _scatter_values_on_batch_indices(
tf.ones_like(spec_aug_mask_idxs), spec_aug_mask_idxs, tf.shape(spec_aug_mask)
)
return spec_aug_mask | Computes random mask spans for a given shape Args: shape: the shape for which to compute masks. should be of size 2 where first element is batch size and 2nd is timesteps attention_mask: optional padding mask of the same size as shape, which will prevent masking padded elements mask_prob: probability for each token to be chosen as start of the span to be masked. this will be multiplied by number of timesteps divided by length of mask span to mask approximately this percentage of all elements. however due to overlaps, the actual number will be smaller (unless no_overlap is True) mask_length: size of the mask min_masks: minimum number of masked spans Adapted from [fairseq's data_utils.py](https://github.com/pytorch/fairseq/blob/e0788f7007a8473a76db573985031f3c94201e79/fairseq/data/data_utils.py#L376). |
10,934 | import inspect
import warnings
from collections.abc import Mapping
from typing import Any, Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput
from ...modeling_tf_utils import TFPreTrainedModel, booleans_processing, get_initializer, keras_serializable
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_hubert import HubertConfig
LARGE_NEGATIVE = -1e8
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
The provided code snippet includes necessary dependencies for implementing the `_expand_mask` function. Write a Python function `def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None)` to solve the following problem:
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
Here is the function:
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE | Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`. |
10,935 | import argparse
import json
import os
import fairseq
import torch
from fairseq.data import Dictionary
from transformers import (
HubertConfig,
HubertForCTC,
HubertModel,
Wav2Vec2CTCTokenizer,
Wav2Vec2FeatureExtractor,
Wav2Vec2Processor,
logging,
)
logger = logging.get_logger(__name__)
def recursively_load_weights(fairseq_model, hf_model, is_finetuned):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
feature_extractor = hf_model.hubert.feature_extractor if is_finetuned else hf_model.feature_extractor
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
else:
for key, mapped_key in MAPPING.items():
mapped_key = "hubert." + mapped_key if (is_finetuned and mapped_key != "lm_head") else mapped_key
if key in name or (key.split("w2v_model.")[-1] == name.split(".")[0] and not is_finetuned):
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "weight" in name:
weight_type = "weight"
elif "bias" in name:
weight_type = "bias"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
The provided code snippet includes necessary dependencies for implementing the `convert_hubert_checkpoint` function. Write a Python function `def convert_hubert_checkpoint( checkpoint_path, pytorch_dump_folder_path, config_path=None, dict_path=None, is_finetuned=True )` to solve the following problem:
Copy/paste/tweak model's weights to transformers design.
Here is the function:
def convert_hubert_checkpoint(
checkpoint_path, pytorch_dump_folder_path, config_path=None, dict_path=None, is_finetuned=True
):
"""
Copy/paste/tweak model's weights to transformers design.
"""
if config_path is not None:
config = HubertConfig.from_pretrained(config_path)
else:
config = HubertConfig()
if is_finetuned:
if dict_path:
target_dict = Dictionary.load(dict_path)
# important change bos & pad token id since CTC symbol is <pad> and
# not <s> as in fairseq
config.bos_token_id = target_dict.pad_index
config.pad_token_id = target_dict.bos_index
config.eos_token_id = target_dict.eos_index
config.vocab_size = len(target_dict.symbols)
vocab_path = os.path.join(pytorch_dump_folder_path, "vocab.json")
if not os.path.isdir(pytorch_dump_folder_path):
logger.error("--pytorch_dump_folder_path ({}) should be a directory".format(pytorch_dump_folder_path))
return
os.makedirs(pytorch_dump_folder_path, exist_ok=True)
with open(vocab_path, "w", encoding="utf-8") as vocab_handle:
json.dump(target_dict.indices, vocab_handle)
tokenizer = Wav2Vec2CTCTokenizer(
vocab_path,
unk_token=target_dict.unk_word,
pad_token=target_dict.pad_word,
bos_token=target_dict.bos_word,
eos_token=target_dict.eos_word,
word_delimiter_token="|",
do_lower_case=False,
)
return_attention_mask = True if config.feat_extract_norm == "layer" else False
feature_extractor = Wav2Vec2FeatureExtractor(
feature_size=1,
sampling_rate=16000,
padding_value=0,
do_normalize=True,
return_attention_mask=return_attention_mask,
)
processor = Wav2Vec2Processor(feature_extractor=feature_extractor, tokenizer=tokenizer)
processor.save_pretrained(pytorch_dump_folder_path)
hf_wav2vec = HubertForCTC(config)
else:
hf_wav2vec = HubertModel(config)
if is_finetuned:
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task(
[checkpoint_path], arg_overrides={"data": "/".join(dict_path.split("/")[:-1])}
)
else:
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task([checkpoint_path])
model = model[0].eval()
recursively_load_weights(model, hf_wav2vec, is_finetuned)
hf_wav2vec.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to transformers design. |
10,936 | import argparse
import json
import os
import fairseq
import torch
from fairseq.data import Dictionary
from transformers import (
Wav2Vec2Config,
Wav2Vec2CTCTokenizer,
Wav2Vec2FeatureExtractor,
Wav2Vec2ForCTC,
Wav2Vec2ForPreTraining,
Wav2Vec2Processor,
logging,
)
logger = logging.get_logger(__name__)
def recursively_load_weights(fairseq_model, hf_model, is_headless):
unused_weights = []
fairseq_dict = fairseq_model.state_dict()
feature_extractor = hf_model.wav2vec2.feature_extractor
for name, value in fairseq_dict.items():
is_used = False
if "conv_layers" in name:
load_conv_layer(
name,
value,
feature_extractor,
unused_weights,
hf_model.config.feat_extract_norm == "group",
)
is_used = True
else:
for key, mapped_key in MAPPING.items():
mapped_key = "wav2vec2." + mapped_key if mapped_key not in TOP_LEVEL_KEYS else mapped_key
if key in name or key.split("w2v_model.")[-1] == name.split(".")[0]:
is_used = True
if "*" in mapped_key:
layer_index = name.split(key)[0].split(".")[-2]
mapped_key = mapped_key.replace("*", layer_index)
if "weight_g" in name:
weight_type = "weight_g"
elif "weight_v" in name:
weight_type = "weight_v"
elif "bias" in name:
weight_type = "bias"
elif "weight" in name:
# TODO: don't match quantizer.weight_proj
weight_type = "weight"
else:
weight_type = None
set_recursively(hf_model, mapped_key, value, name, weight_type)
continue
if not is_used:
unused_weights.append(name)
logger.warning(f"Unused weights: {unused_weights}")
The provided code snippet includes necessary dependencies for implementing the `convert_wav2vec2_checkpoint` function. Write a Python function `def convert_wav2vec2_checkpoint( checkpoint_path, pytorch_dump_folder_path, config_path=None, dict_path=None, is_finetuned=True )` to solve the following problem:
Copy/paste/tweak model's weights to transformers design.
Here is the function:
def convert_wav2vec2_checkpoint(
checkpoint_path, pytorch_dump_folder_path, config_path=None, dict_path=None, is_finetuned=True
):
"""
Copy/paste/tweak model's weights to transformers design.
"""
if config_path is not None:
config = Wav2Vec2Config.from_pretrained(config_path)
else:
config = Wav2Vec2Config()
if is_finetuned:
if dict_path:
target_dict = Dictionary.load(dict_path)
# important change bos & pad token id since CTC symbol is <pad> and
# not <s> as in fairseq
config.bos_token_id = target_dict.pad_index
config.pad_token_id = target_dict.bos_index
config.eos_token_id = target_dict.eos_index
config.vocab_size = len(target_dict.symbols)
vocab_path = os.path.join(pytorch_dump_folder_path, "vocab.json")
if not os.path.isdir(pytorch_dump_folder_path):
logger.error("--pytorch_dump_folder_path ({}) should be a directory".format(pytorch_dump_folder_path))
return
os.makedirs(pytorch_dump_folder_path, exist_ok=True)
vocab_dict = target_dict.indices
# fairseq has the <pad> and <s> switched
vocab_dict["<pad>"] = 0
vocab_dict["<s>"] = 1
with open(vocab_path, "w", encoding="utf-8") as vocab_handle:
json.dump(vocab_dict, vocab_handle)
tokenizer = Wav2Vec2CTCTokenizer(
vocab_path,
unk_token=target_dict.unk_word,
pad_token=target_dict.pad_word,
bos_token=target_dict.bos_word,
eos_token=target_dict.eos_word,
word_delimiter_token="|",
do_lower_case=False,
)
return_attention_mask = True if config.feat_extract_norm == "layer" else False
feature_extractor = Wav2Vec2FeatureExtractor(
feature_size=1,
sampling_rate=16000,
padding_value=0,
do_normalize=True,
return_attention_mask=return_attention_mask,
)
processor = Wav2Vec2Processor(feature_extractor=feature_extractor, tokenizer=tokenizer)
processor.save_pretrained(pytorch_dump_folder_path)
hf_wav2vec = Wav2Vec2ForCTC(config)
else:
hf_wav2vec = Wav2Vec2ForPreTraining(config)
if is_finetuned:
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task(
[checkpoint_path], arg_overrides={"data": "/".join(dict_path.split("/")[:-1])}
)
else:
task_arg = argparse.Namespace(task="audio_pretraining")
task = fairseq.tasks.setup_task(task_arg)
model, _, _ = fairseq.checkpoint_utils.load_model_ensemble_and_task([checkpoint_path], task=task)
model = model[0].eval()
recursively_load_weights(model, hf_wav2vec, not is_finetuned)
hf_wav2vec.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to transformers design. |
10,937 | import inspect
import warnings
from collections.abc import Mapping
from dataclasses import dataclass
from typing import Any, Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput
from ...modeling_tf_utils import (
TFPreTrainedModel,
booleans_processing,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_wav2vec2 import Wav2Vec2Config
logger = logging.get_logger(__name__)
def booleans_processing(config, **kwargs):
"""
Process the input booleans of each model.
Args:
config ([`PretrainedConfig`]):
The config of the running model.
**kwargs:
The boolean parameters
Returns:
A dictionary with the proper values for each boolean
"""
final_booleans = {}
# Pure conv models (such as ConvNext) do not have `output_attentions`. If the signature has
# `output_attentions`, it will be present here in `kwargs`, even if unset (in that case, as `None`)
if "output_attentions" in kwargs:
final_booleans["output_attentions"] = (
kwargs["output_attentions"] if kwargs["output_attentions"] is not None else config.output_attentions
)
final_booleans["output_hidden_states"] = (
kwargs["output_hidden_states"] if kwargs["output_hidden_states"] is not None else config.output_hidden_states
)
final_booleans["return_dict"] = kwargs["return_dict"] if kwargs["return_dict"] is not None else config.return_dict
if "use_cache" in kwargs:
final_booleans["use_cache"] = (
kwargs["use_cache"] if kwargs["use_cache"] is not None else getattr(config, "use_cache", None)
)
return final_booleans
The provided code snippet includes necessary dependencies for implementing the `input_values_processing` function. Write a Python function `def input_values_processing(func, config, input_values, **kwargs)` to solve the following problem:
Process the input of each TensorFlow model including the booleans. In case of a list of symbolic inputs, each input has to be named accordingly to the parameters name, i.e. `input_values = tf.keras.Input(shape=(128,), dtype='float32', name="input_values")` otherwise the order of the tensors will not be guaranteed during the training. Args: func (`callable`): The callable function of the TensorFlow model. config ([`PretrainedConfig`]): The config of the running model. **kwargs: The inputs of the model. Returns: Two lists, one for the missing layers, and another one for the unexpected layers.
Here is the function:
def input_values_processing(func, config, input_values, **kwargs):
"""
Process the input of each TensorFlow model including the booleans. In case of a list of symbolic inputs, each input
has to be named accordingly to the parameters name, i.e. `input_values = tf.keras.Input(shape=(128,),
dtype='float32', name="input_values")` otherwise the order of the tensors will not be guaranteed during the
training.
Args:
func (`callable`):
The callable function of the TensorFlow model.
config ([`PretrainedConfig`]):
The config of the running model.
**kwargs:
The inputs of the model.
Returns:
Two lists, one for the missing layers, and another one for the unexpected layers.
"""
signature = dict(inspect.signature(func).parameters)
signature.pop("kwargs", None)
signature.pop("self", None)
parameter_names = list(signature.keys())
output = {}
allowed_types = (tf.Tensor, bool, int, ModelOutput, tuple, list, dict, np.ndarray)
for k, v in kwargs.items():
if isinstance(v, allowed_types) or v is None:
output[k] = v
else:
raise ValueError(f"Data of type {type(v)} is not allowed only {allowed_types} is accepted for {k}.")
if isinstance(input_values, (tuple, list)):
for i, input in enumerate(input_values):
# EagerTensors don't allow to use the .name property so we check for a real Tensor
if type(input) == tf.Tensor:
# Tensor names have always the pattern `name:id` then we check only the
# `name` part
tensor_name = input.name.split(":")[0]
if tensor_name in parameter_names:
output[tensor_name] = input
else:
output[parameter_names[i]] = input
elif isinstance(input, allowed_types) or input is None:
output[parameter_names[i]] = input
else:
raise ValueError(
f"Data of type {type(input)} is not allowed only {allowed_types} is accepted for"
f" {parameter_names[i]}."
)
elif isinstance(input_values, Mapping):
if "inputs" in input_values:
warnings.warn(
"The `inputs` argument is deprecated and will be removed in a future version, use `input_values`"
" instead.",
FutureWarning,
)
output["input_values"] = input_values.pop("inputs")
if "decoder_cached_states" in input_values:
warnings.warn(
"The `decoder_cached_states` argument is deprecated and will be removed in a future version, use"
" `past_key_values` instead.",
FutureWarning,
)
output["past_key_values"] = input_values.pop("decoder_cached_states")
for k, v in dict(input_values).items():
if isinstance(v, allowed_types) or v is None:
output[k] = v
elif k not in parameter_names and "args" not in parameter_names:
logger.warning(
f"The parameter {k} does not belongs to the parameter list {parameter_names} and will be ignored."
)
continue
else:
raise ValueError(f"Data of type {type(v)} is not allowed only {allowed_types} is accepted for {k}.")
else:
if isinstance(input_values, tf.Tensor) or input_values is None:
output[parameter_names[0]] = input_values
else:
raise ValueError(
f"Data of type {type(input_values)} is not allowed only {allowed_types} is accepted for"
f" {parameter_names[0]}."
)
for name in parameter_names:
if name not in list(output.keys()) and name != "args":
output[name] = kwargs.pop(name, signature[name].default)
# When creating a SavedModel TF calls the method with LayerCall.__call__(args, **kwargs)
# So to respect the proper output we have to add this exception
if "args" in output:
if output["args"] is not None and type(output["args"]) == tf.Tensor:
tensor_name = output["args"].name.split(":")[0]
output[tensor_name] = output["args"]
else:
# `args` in this case is always the first parameter, then `input_values`
output["input_values"] = output["args"]
del output["args"]
if "kwargs" in output:
del output["kwargs"]
boolean_dict = {
k: v
for k, v in output.items()
if k in ["return_dict", "output_attentions", "output_hidden_states", "use_cache"]
}
output.update(booleans_processing(config=config, **boolean_dict))
return output | Process the input of each TensorFlow model including the booleans. In case of a list of symbolic inputs, each input has to be named accordingly to the parameters name, i.e. `input_values = tf.keras.Input(shape=(128,), dtype='float32', name="input_values")` otherwise the order of the tensors will not be guaranteed during the training. Args: func (`callable`): The callable function of the TensorFlow model. config ([`PretrainedConfig`]): The config of the running model. **kwargs: The inputs of the model. Returns: Two lists, one for the missing layers, and another one for the unexpected layers. |
10,938 | import inspect
import warnings
from collections.abc import Mapping
from dataclasses import dataclass
from typing import Any, Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput
from ...modeling_tf_utils import (
TFPreTrainedModel,
booleans_processing,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_wav2vec2 import Wav2Vec2Config
def _sample_without_replacement(distribution, num_samples):
"""
Categorical sampling without replacement is currently not implemented. The gumbel-max trick will do for now - see
https://github.com/tensorflow/tensorflow/issues/9260 for more info
"""
z = -tf.math.log(tf.random.uniform(shape_list(distribution), 0, 1))
_, indices = tf.nn.top_k(distribution + z, num_samples)
return indices
def _scatter_values_on_batch_indices(values, batch_indices, output_shape):
"""
Scatter function as in PyTorch with indices in format (batch_dim, indixes)
"""
indices_shape = shape_list(batch_indices)
# broadcast batch dim to indices_shape
broad_casted_batch_dims = tf.reshape(
tf.broadcast_to(tf.expand_dims(tf.range(indices_shape[0]), axis=-1), indices_shape), [1, -1]
)
# transform batch_indices to pair_indices
pair_indices = tf.transpose(tf.concat([broad_casted_batch_dims, tf.reshape(batch_indices, [1, -1])], 0))
# scatter values to pair indices
return tf.scatter_nd(pair_indices, tf.reshape(values, [-1]), output_shape)
The provided code snippet includes necessary dependencies for implementing the `_compute_mask_indices` function. Write a Python function `def _compute_mask_indices( shape: Tuple[int, int], mask_prob: float, mask_length: int, min_masks: int = 0, ) -> tf.Tensor` to solve the following problem:
Computes random mask spans for a given shape Args: shape: the shape for which to compute masks. should be of size 2 where first element is batch size and 2nd is timesteps attention_mask: optional padding mask of the same size as shape, which will prevent masking padded elements mask_prob: probability for each token to be chosen as start of the span to be masked. this will be multiplied by number of timesteps divided by length of mask span to mask approximately this percentage of all elements. however due to overlaps, the actual number will be smaller (unless no_overlap is True) mask_length: size of the mask min_masks: minimum number of masked spans Adapted from [fairseq's data_utils.py](https://github.com/pytorch/fairseq/blob/e0788f7007a8473a76db573985031f3c94201e79/fairseq/data/data_utils.py#L376).
Here is the function:
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
min_masks: int = 0,
) -> tf.Tensor:
"""
Computes random mask spans for a given shape
Args:
shape: the shape for which to compute masks.
should be of size 2 where first element is batch size and 2nd is timesteps
attention_mask: optional padding mask of the same size as shape, which will prevent masking padded elements
mask_prob:
probability for each token to be chosen as start of the span to be masked. this will be multiplied by
number of timesteps divided by length of mask span to mask approximately this percentage of all elements.
however due to overlaps, the actual number will be smaller (unless no_overlap is True)
mask_length: size of the mask
min_masks: minimum number of masked spans
Adapted from [fairseq's
data_utils.py](https://github.com/pytorch/fairseq/blob/e0788f7007a8473a76db573985031f3c94201e79/fairseq/data/data_utils.py#L376).
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length} and"
f" `sequence_length`: {sequence_length}`"
)
# compute number of masked spans in batch
num_masked_spans = mask_prob * sequence_length / mask_length + tf.random.uniform((1,))
num_masked_spans = tf.maximum(num_masked_spans, min_masks)
num_masked_spans = tf.cast(num_masked_spans, tf.int32)
# make sure num masked indices <= sequence_length
num_masked_spans = tf.math.minimum(sequence_length // mask_length, num_masked_spans)
num_masked_spans = tf.squeeze(num_masked_spans)
# SpecAugment mask to fill
spec_aug_mask = tf.zeros((batch_size, sequence_length), dtype=tf.int32)
# uniform distribution to sample from, make sure that offset samples are < sequence_length
uniform_dist = tf.ones((batch_size, sequence_length - (mask_length - 1)))
# get random indices to mask
spec_aug_mask_idxs = _sample_without_replacement(uniform_dist, num_masked_spans)
# expand masked indices to masked spans
spec_aug_mask_idxs = tf.expand_dims(spec_aug_mask_idxs, -1)
spec_aug_mask_idxs = tf.tile(spec_aug_mask_idxs, (1, 1, mask_length))
spec_aug_mask_idxs = tf.reshape(spec_aug_mask_idxs, (batch_size, num_masked_spans * mask_length))
offsets = tf.range(mask_length)[tf.newaxis, tf.newaxis, :]
offsets = tf.tile(offsets, (batch_size, num_masked_spans, 1))
offsets = tf.reshape(offsets, (batch_size, num_masked_spans * mask_length))
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# scatter indices to mask
spec_aug_mask = _scatter_values_on_batch_indices(
tf.ones_like(spec_aug_mask_idxs), spec_aug_mask_idxs, tf.shape(spec_aug_mask)
)
return spec_aug_mask | Computes random mask spans for a given shape Args: shape: the shape for which to compute masks. should be of size 2 where first element is batch size and 2nd is timesteps attention_mask: optional padding mask of the same size as shape, which will prevent masking padded elements mask_prob: probability for each token to be chosen as start of the span to be masked. this will be multiplied by number of timesteps divided by length of mask span to mask approximately this percentage of all elements. however due to overlaps, the actual number will be smaller (unless no_overlap is True) mask_length: size of the mask min_masks: minimum number of masked spans Adapted from [fairseq's data_utils.py](https://github.com/pytorch/fairseq/blob/e0788f7007a8473a76db573985031f3c94201e79/fairseq/data/data_utils.py#L376). |
10,939 | import inspect
import warnings
from collections.abc import Mapping
from dataclasses import dataclass
from typing import Any, Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import TFBaseModelOutput, TFCausalLMOutput
from ...modeling_tf_utils import (
TFPreTrainedModel,
booleans_processing,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_wav2vec2 import Wav2Vec2Config
LARGE_NEGATIVE = -1e8
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
The provided code snippet includes necessary dependencies for implementing the `_expand_mask` function. Write a Python function `def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None)` to solve the following problem:
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
Here is the function:
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE | Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`. |
10,940 | import argparse
import torch
from transformers import (
Wav2Vec2Config,
Wav2Vec2FeatureExtractor,
Wav2Vec2ForAudioFrameClassification,
Wav2Vec2ForSequenceClassification,
Wav2Vec2ForXVector,
logging,
)
def convert_classification(base_model_name, hf_config, downstream_dict):
model = Wav2Vec2ForSequenceClassification.from_pretrained(base_model_name, config=hf_config)
model.projector.weight.data = downstream_dict["projector.weight"]
model.projector.bias.data = downstream_dict["projector.bias"]
model.classifier.weight.data = downstream_dict["model.post_net.linear.weight"]
model.classifier.bias.data = downstream_dict["model.post_net.linear.bias"]
return model
def convert_diarization(base_model_name, hf_config, downstream_dict):
model = Wav2Vec2ForAudioFrameClassification.from_pretrained(base_model_name, config=hf_config)
model.classifier.weight.data = downstream_dict["model.linear.weight"]
model.classifier.bias.data = downstream_dict["model.linear.bias"]
return model
def convert_xvector(base_model_name, hf_config, downstream_dict):
model = Wav2Vec2ForXVector.from_pretrained(base_model_name, config=hf_config)
model.projector.weight.data = downstream_dict["connector.weight"]
model.projector.bias.data = downstream_dict["connector.bias"]
for i, kernel_size in enumerate(hf_config.tdnn_kernel):
model.tdnn[i].kernel.weight.data = downstream_dict[
f"model.framelevel_feature_extractor.module.{i}.kernel.weight"
]
model.tdnn[i].kernel.bias.data = downstream_dict[f"model.framelevel_feature_extractor.module.{i}.kernel.bias"]
model.feature_extractor.weight.data = downstream_dict["model.utterancelevel_feature_extractor.linear1.weight"]
model.feature_extractor.bias.data = downstream_dict["model.utterancelevel_feature_extractor.linear1.bias"]
model.classifier.weight.data = downstream_dict["model.utterancelevel_feature_extractor.linear2.weight"]
model.classifier.bias.data = downstream_dict["model.utterancelevel_feature_extractor.linear2.bias"]
model.objective.weight.data = downstream_dict["objective.W"]
return model
The provided code snippet includes necessary dependencies for implementing the `convert_s3prl_checkpoint` function. Write a Python function `def convert_s3prl_checkpoint(base_model_name, config_path, checkpoint_path, model_dump_path)` to solve the following problem:
Copy/paste/tweak model's weights to transformers design.
Here is the function:
def convert_s3prl_checkpoint(base_model_name, config_path, checkpoint_path, model_dump_path):
"""
Copy/paste/tweak model's weights to transformers design.
"""
checkpoint = torch.load(checkpoint_path, map_location="cpu")
downstream_dict = checkpoint["Downstream"]
hf_config = Wav2Vec2Config.from_pretrained(config_path)
hf_feature_extractor = Wav2Vec2FeatureExtractor.from_pretrained(
base_model_name, return_attention_mask=True, do_normalize=False
)
arch = hf_config.architectures[0]
if arch.endswith("ForSequenceClassification"):
hf_model = convert_classification(base_model_name, hf_config, downstream_dict)
elif arch.endswith("ForAudioFrameClassification"):
hf_model = convert_diarization(base_model_name, hf_config, downstream_dict)
elif arch.endswith("ForXVector"):
hf_model = convert_xvector(base_model_name, hf_config, downstream_dict)
else:
raise NotImplementedError(f"S3PRL weights conversion is not supported for {arch}")
if hf_config.use_weighted_layer_sum:
hf_model.layer_weights.data = checkpoint["Featurizer"]["weights"]
hf_feature_extractor.save_pretrained(model_dump_path)
hf_model.save_pretrained(model_dump_path) | Copy/paste/tweak model's weights to transformers design. |
10,941 | import math
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import (
BaseModelOutput,
CausalLMOutput,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
Wav2Vec2BaseModelOutput,
XVectorOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import torch_int_div
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_wav2vec2 import Wav2Vec2Config
The provided code snippet includes necessary dependencies for implementing the `_compute_mask_indices` function. Write a Python function `def _compute_mask_indices( shape: Tuple[int, int], mask_prob: float, mask_length: int, attention_mask: Optional[torch.LongTensor] = None, min_masks: int = 0, ) -> np.ndarray` to solve the following problem:
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on CPU as part of the preprocessing during training. Args: shape: The shape for which to compute masks. This should be of a tuple of size 2 where the first element is the batch size and the second element is the length of the axis to span. mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of independently generated mask spans of length `mask_length` is computed by `mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the actual percentage will be smaller. mask_length: size of the mask min_masks: minimum number of masked spans attention_mask: A (right-padded) attention mask which independently shortens the feature axis of each batch dimension.
Here is the function:
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
attention_mask: Optional[torch.LongTensor] = None,
min_masks: int = 0,
) -> np.ndarray:
"""
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for
ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on
CPU as part of the preprocessing during training.
Args:
shape: The shape for which to compute masks. This should be of a tuple of size 2 where
the first element is the batch size and the second element is the length of the axis to span.
mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of
independently generated mask spans of length `mask_length` is computed by
`mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the
actual percentage will be smaller.
mask_length: size of the mask
min_masks: minimum number of masked spans
attention_mask: A (right-padded) attention mask which independently shortens the feature axis of
each batch dimension.
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length}"
f" and `sequence_length`: {sequence_length}`"
)
# epsilon is used for probabilistic rounding
epsilon = np.random.rand(1).item()
def compute_num_masked_span(input_length):
"""Given input length, compute how many spans should be masked"""
num_masked_span = int(mask_prob * input_length / mask_length + epsilon)
num_masked_span = max(num_masked_span, min_masks)
# make sure num masked span <= sequence_length
if num_masked_span * mask_length > sequence_length:
num_masked_span = sequence_length // mask_length
# make sure num_masked span is also <= input_length - (mask_length - 1)
if input_length - (mask_length - 1) < num_masked_span:
num_masked_span = max(input_length - (mask_length - 1), 0)
return num_masked_span
# compute number of masked spans in batch
input_lengths = (
attention_mask.sum(-1).detach().tolist()
if attention_mask is not None
else [sequence_length for _ in range(batch_size)]
)
# SpecAugment mask to fill
spec_aug_mask = np.zeros((batch_size, sequence_length), dtype=bool)
spec_aug_mask_idxs = []
max_num_masked_span = compute_num_masked_span(sequence_length)
if max_num_masked_span == 0:
return spec_aug_mask
for input_length in input_lengths:
# compute num of masked spans for this input
num_masked_span = compute_num_masked_span(input_length)
# get random indices to mask
spec_aug_mask_idx = np.random.choice(
np.arange(input_length - (mask_length - 1)), num_masked_span, replace=False
)
# pick first sampled index that will serve as a dummy index to pad vector
# to ensure same dimension for all batches due to probabilistic rounding
# Picking first sample just pads those vectors twice.
if len(spec_aug_mask_idx) == 0:
# this case can only happen if `input_length` is strictly smaller then
# `sequence_length` in which case the last token has to be a padding
# token which we can use as a dummy mask id
dummy_mask_idx = sequence_length - 1
else:
dummy_mask_idx = spec_aug_mask_idx[0]
spec_aug_mask_idx = np.concatenate(
[spec_aug_mask_idx, np.ones(max_num_masked_span - num_masked_span, dtype=np.int32) * dummy_mask_idx]
)
spec_aug_mask_idxs.append(spec_aug_mask_idx)
spec_aug_mask_idxs = np.array(spec_aug_mask_idxs)
# expand masked indices to masked spans
spec_aug_mask_idxs = np.broadcast_to(
spec_aug_mask_idxs[:, :, None], (batch_size, max_num_masked_span, mask_length)
)
spec_aug_mask_idxs = spec_aug_mask_idxs.reshape(batch_size, max_num_masked_span * mask_length)
# add offset to the starting indexes so that indexes now create a span
offsets = np.arange(mask_length)[None, None, :]
offsets = np.broadcast_to(offsets, (batch_size, max_num_masked_span, mask_length)).reshape(
batch_size, max_num_masked_span * mask_length
)
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# ensure that we cannot have indices larger than sequence_length
if spec_aug_mask_idxs.max() > sequence_length - 1:
spec_aug_mask_idxs[spec_aug_mask_idxs > sequence_length - 1] = sequence_length - 1
# scatter indices to mask
np.put_along_axis(spec_aug_mask, spec_aug_mask_idxs, 1, -1)
return spec_aug_mask | Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on CPU as part of the preprocessing during training. Args: shape: The shape for which to compute masks. This should be of a tuple of size 2 where the first element is the batch size and the second element is the length of the axis to span. mask_prob: The percentage of the whole axis (between 0 and 1) which will be masked. The number of independently generated mask spans of length `mask_length` is computed by `mask_prob*shape[1]/mask_length`. Note that due to overlaps, `mask_prob` is an upper bound and the actual percentage will be smaller. mask_length: size of the mask min_masks: minimum number of masked spans attention_mask: A (right-padded) attention mask which independently shortens the feature axis of each batch dimension. |
10,942 | import math
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import (
BaseModelOutput,
CausalLMOutput,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
Wav2Vec2BaseModelOutput,
XVectorOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import torch_int_div
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_wav2vec2 import Wav2Vec2Config
The provided code snippet includes necessary dependencies for implementing the `_sample_negative_indices` function. Write a Python function `def _sample_negative_indices( features_shape: Tuple, num_negatives: int, mask_time_indices: Optional[np.ndarray] = None )` to solve the following problem:
Sample `num_negatives` vectors from feature vectors.
Here is the function:
def _sample_negative_indices(
features_shape: Tuple, num_negatives: int, mask_time_indices: Optional[np.ndarray] = None
):
"""
Sample `num_negatives` vectors from feature vectors.
"""
batch_size, sequence_length = features_shape
# generate indices of the positive vectors themselves, repeat them `num_negatives` times
sequence_length_range = np.arange(sequence_length)
# get `num_negatives` random vector indices from the same utterance
sampled_negative_indices = np.zeros(shape=(batch_size, sequence_length, num_negatives), dtype=np.int32)
mask_time_indices = (
mask_time_indices.astype(bool) if mask_time_indices is not None else np.ones(features_shape, dtype=bool)
)
for batch_idx in range(batch_size):
high = mask_time_indices[batch_idx].sum() - 1
mapped_masked_indices = sequence_length_range[mask_time_indices[batch_idx]]
feature_indices = np.broadcast_to(np.arange(high + 1)[:, None], (high + 1, num_negatives))
sampled_indices = np.random.randint(0, high, size=(high + 1, num_negatives))
# avoid sampling the same positive vector, but keep the distribution uniform
sampled_indices[sampled_indices >= feature_indices] += 1
# remap to actual indices
sampled_negative_indices[batch_idx][mask_time_indices[batch_idx]] = mapped_masked_indices[sampled_indices]
# correct for batch size
sampled_negative_indices[batch_idx] += batch_idx * sequence_length
return sampled_negative_indices | Sample `num_negatives` vectors from feature vectors. |
10,943 | from functools import partial
from typing import Optional, Tuple, Union
import numpy as np
import flax
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from ...modeling_flax_outputs import FlaxBaseModelOutput, FlaxCausalLMOutput
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import ModelOutput, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_wav2vec2 import Wav2Vec2Config
The provided code snippet includes necessary dependencies for implementing the `_compute_mask_indices` function. Write a Python function `def _compute_mask_indices( shape: Tuple[int, int], mask_prob: float, mask_length: int, attention_mask: Optional[np.ndarray] = None, min_masks: int = 0, ) -> np.ndarray` to solve the following problem:
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on CPU as part of the preprocessing during training. Args: shape: the shape for which to compute masks. should be of size 2 where first element is batch size and 2nd is timesteps mask_prob: probability for each token to be chosen as start of the span to be masked. this will be multiplied by number of timesteps divided by length of mask span to mask approximately this percentage of all elements. however due to overlaps, the actual number will be smaller (unless no_overlap is True) mask_length: size of the mask min_masks: minimum number of masked spans
Here is the function:
def _compute_mask_indices(
shape: Tuple[int, int],
mask_prob: float,
mask_length: int,
attention_mask: Optional[np.ndarray] = None,
min_masks: int = 0,
) -> np.ndarray:
"""
Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for
ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on
CPU as part of the preprocessing during training.
Args:
shape: the shape for which to compute masks.
should be of size 2 where first element is batch size and 2nd is timesteps
mask_prob:
probability for each token to be chosen as start of the span to be masked. this will be multiplied by
number of timesteps divided by length of mask span to mask approximately this percentage of all elements.
however due to overlaps, the actual number will be smaller (unless no_overlap is True)
mask_length: size of the mask
min_masks: minimum number of masked spans
"""
batch_size, sequence_length = shape
if mask_length < 1:
raise ValueError("`mask_length` has to be bigger than 0.")
if mask_length > sequence_length:
raise ValueError(
f"`mask_length` has to be smaller than `sequence_length`, but got `mask_length`: {mask_length} and"
f" `sequence_length`: {sequence_length}`"
)
# compute number of masked spans in batch
num_masked_spans = int(mask_prob * sequence_length / mask_length + np.random.rand(1).item())
num_masked_spans = max(num_masked_spans, min_masks)
# make sure num masked indices <= sequence_length
if num_masked_spans * mask_length > sequence_length:
num_masked_spans = sequence_length // mask_length
# SpecAugment mask to fill
spec_aug_mask = np.zeros((batch_size, sequence_length), dtype=bool)
# get random indices to mask
spec_aug_mask_idxs = np.array(
[
np.random.choice(np.arange(sequence_length - (mask_length - 1)), num_masked_spans, replace=False)
for _ in range(batch_size)
]
)
# expand masked indices to masked spans
spec_aug_mask_idxs = np.broadcast_to(spec_aug_mask_idxs[:, :, None], (batch_size, num_masked_spans, mask_length))
spec_aug_mask_idxs = spec_aug_mask_idxs.reshape(batch_size, num_masked_spans * mask_length)
offsets = np.arange(mask_length)[None, None, :]
offsets = np.broadcast_to(offsets, (batch_size, num_masked_spans, mask_length)).reshape(
batch_size, num_masked_spans * mask_length
)
spec_aug_mask_idxs = spec_aug_mask_idxs + offsets
# scatter indices to mask
np.put_along_axis(spec_aug_mask, spec_aug_mask_idxs, 1, -1)
if attention_mask is not None:
# make sure padded input ids cannot be masked
spec_aug_mask = np.where(attention_mask, spec_aug_mask, False)
return spec_aug_mask | Computes random mask spans for a given shape. Used to implement [SpecAugment: A Simple Data Augmentation Method for ASR](https://arxiv.org/abs/1904.08779). Note that this method is not optimized to run on TPU and should be run on CPU as part of the preprocessing during training. Args: shape: the shape for which to compute masks. should be of size 2 where first element is batch size and 2nd is timesteps mask_prob: probability for each token to be chosen as start of the span to be masked. this will be multiplied by number of timesteps divided by length of mask span to mask approximately this percentage of all elements. however due to overlaps, the actual number will be smaller (unless no_overlap is True) mask_length: size of the mask min_masks: minimum number of masked spans |
10,944 | from functools import partial
from typing import Optional, Tuple, Union
import numpy as np
import flax
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from ...modeling_flax_outputs import FlaxBaseModelOutput, FlaxCausalLMOutput
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import ModelOutput, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_wav2vec2 import Wav2Vec2Config
The provided code snippet includes necessary dependencies for implementing the `_sample_negative_indices` function. Write a Python function `def _sample_negative_indices(features_shape: Tuple, num_negatives: int, attention_mask: Optional[np.ndarray] = None)` to solve the following problem:
Sample `num_negatives` vectors from feature vectors.
Here is the function:
def _sample_negative_indices(features_shape: Tuple, num_negatives: int, attention_mask: Optional[np.ndarray] = None):
"""
Sample `num_negatives` vectors from feature vectors.
"""
batch_size, sequence_length, hidden_size = features_shape
if sequence_length <= 1:
raise ValueError(
"`features should have `sequence_length` > 1, but are of shape "
f"(batch_size, sequence_length, hidden_size) = ({batch_size, sequence_length, hidden_size})."
)
# get `num_negatives` random vector indices from the same utterance
sampled_negative_indices = []
for batch_idx in range(batch_size):
high = attention_mask[batch_idx].sum() - 1 if attention_mask is not None else sequence_length - 1
sampled_indices_slice = np.random.randint(0, high, size=(num_negatives * sequence_length,))
sampled_negative_indices.append(sampled_indices_slice)
sampled_negative_indices = np.asarray(sampled_negative_indices, dtype=np.int32)
# generate indices of the positive vectors themselves, repeat them `num_negatives` times
feature_indices = np.broadcast_to(np.arange(sequence_length)[:, None], (sequence_length, num_negatives)).flatten()
# avoid sampling the same positive vector, but keep the distribution uniform
sampled_negative_indices[sampled_negative_indices >= feature_indices] += 1
# correct for batch size
for batch_idx in range(1, batch_size):
sampled_negative_indices[batch_idx] += batch_idx * sequence_length
return sampled_negative_indices | Sample `num_negatives` vectors from feature vectors. |
10,945 | from dataclasses import asdict, dataclass
from typing import Optional
from ...configuration_utils import PretrainedConfig
from ...utils import logging
def get_default_vocab_list():
return (
"<cls>",
"<pad>",
"<eos>",
"<unk>",
"L",
"A",
"G",
"V",
"S",
"E",
"R",
"T",
"I",
"D",
"P",
"K",
"Q",
"N",
"F",
"Y",
"M",
"H",
"W",
"C",
"X",
"B",
"U",
"Z",
"O",
".",
"-",
"<null_1>",
"<mask>",
) | null |
10,946 | import argparse
import pathlib
from pathlib import Path
from tempfile import TemporaryDirectory
import torch
import esm as esm_module
from esm.esmfold.v1.pretrained import esmfold_v1
from transformers.models.esm.configuration_esm import EsmConfig, EsmFoldConfig
from transformers.models.esm.modeling_esm import (
EsmForMaskedLM,
EsmForSequenceClassification,
EsmIntermediate,
EsmLayer,
EsmOutput,
EsmSelfAttention,
EsmSelfOutput,
)
from transformers.models.esm.modeling_esmfold import EsmForProteinFolding
from transformers.models.esm.tokenization_esm import EsmTokenizer
from transformers.utils import logging
SAMPLE_DATA = [
("protein1", "MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGG"),
("protein2", "MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLA"),
("protein3", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLAGG"),
("protein4", "MKTVRQERLKSI<mask>RILERSKEPVSGAQLAEELS<mask>SRQVIVQDIAYLRSLGYN<mask>VATPRGYVLA"),
]
MODEL_MAPPING = {
"esm1b_t33_650M_UR50S": esm_module.pretrained.esm1b_t33_650M_UR50S,
"esm1v_t33_650M_UR90S_1": esm_module.pretrained.esm1v_t33_650M_UR90S_1,
"esm1v_t33_650M_UR90S_2": esm_module.pretrained.esm1v_t33_650M_UR90S_2,
"esm1v_t33_650M_UR90S_3": esm_module.pretrained.esm1v_t33_650M_UR90S_3,
"esm1v_t33_650M_UR90S_4": esm_module.pretrained.esm1v_t33_650M_UR90S_4,
"esm1v_t33_650M_UR90S_5": esm_module.pretrained.esm1v_t33_650M_UR90S_5,
"esm2_t48_15B_UR50D": esm_module.pretrained.esm2_t48_15B_UR50D,
"esm2_t36_3B_UR50D": esm_module.pretrained.esm2_t36_3B_UR50D,
"esm2_t33_650M_UR50D": esm_module.pretrained.esm2_t33_650M_UR50D,
"esm2_t30_150M_UR50D": esm_module.pretrained.esm2_t30_150M_UR50D,
"esm2_t12_35M_UR50D": esm_module.pretrained.esm2_t12_35M_UR50D,
"esm2_t6_8M_UR50D": esm_module.pretrained.esm2_t6_8M_UR50D,
"esmfold_v1": esmfold_v1,
}
def transfer_and_check_weights(original_module, our_module):
status = our_module.load_state_dict(original_module.state_dict())
if status.missing_keys:
raise ValueError(f"Missing keys: {status.missing_keys}")
if status.unexpected_keys:
raise ValueError(f"Unexpected keys: {status.unexpected_keys}")
The provided code snippet includes necessary dependencies for implementing the `convert_esm_checkpoint_to_pytorch` function. Write a Python function `def convert_esm_checkpoint_to_pytorch( model: str, pytorch_dump_folder_path: str, classification_head: bool, push_to_repo: str, auth_token: str )` to solve the following problem:
Copy/paste/tweak esm's weights to our BERT structure.
Here is the function:
def convert_esm_checkpoint_to_pytorch(
model: str, pytorch_dump_folder_path: str, classification_head: bool, push_to_repo: str, auth_token: str
):
"""
Copy/paste/tweak esm's weights to our BERT structure.
"""
if model.startswith("esmfold"):
esm = MODEL_MAPPING[model]()
alphabet = esm.esm.alphabet
else:
esm, alphabet = MODEL_MAPPING[model]()
esm.eval() # disable dropout
if model.startswith("esmfold"):
embed_dim = esm.esm.embed_dim
num_layers = esm.esm.num_layers
num_attention_heads = esm.esm.attention_heads
intermediate_size = 4 * embed_dim
token_dropout = esm.esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = True
esmfold_config = EsmFoldConfig()
for key, val in esm.cfg.items():
if hasattr(esmfold_config, key) and key != "trunk":
setattr(esmfold_config, key, val)
for key, val in esm.cfg.trunk.items():
if hasattr(esmfold_config.trunk, key) and key != "structure_module":
setattr(esmfold_config.trunk, key, val)
for key, val in esm.cfg.trunk.structure_module.items():
if hasattr(esmfold_config.trunk.structure_module, key):
setattr(esmfold_config.trunk.structure_module, key, val)
elif hasattr(esm, "args"):
# Indicates an ESM-1b or ESM-1v model
embed_dim = esm.args.embed_dim
num_layers = esm.args.layers
num_attention_heads = esm.args.attention_heads
intermediate_size = esm.args.ffn_embed_dim
token_dropout = esm.args.token_dropout
emb_layer_norm_before = True if esm.emb_layer_norm_before else False
position_embedding_type = "absolute"
is_folding_model = False
esmfold_config = None
else:
# Indicates an ESM-2 model
embed_dim = esm.embed_dim
num_layers = esm.num_layers
num_attention_heads = esm.attention_heads
intermediate_size = 4 * embed_dim # This is hardcoded in ESM-2
token_dropout = esm.token_dropout
emb_layer_norm_before = False # This code path does not exist in ESM-2
position_embedding_type = "rotary"
is_folding_model = False
esmfold_config = None
vocab_list = tuple(alphabet.all_toks)
if is_folding_model:
original_esm_model = esm.esm
else:
original_esm_model = esm
config = EsmConfig(
vocab_size=original_esm_model.embed_tokens.num_embeddings,
mask_token_id=alphabet.mask_idx,
hidden_size=embed_dim,
num_hidden_layers=num_layers,
num_attention_heads=num_attention_heads,
intermediate_size=intermediate_size,
max_position_embeddings=1026,
layer_norm_eps=1e-5, # PyTorch default used in fairseq
attention_probs_dropout_prob=0.0,
hidden_dropout_prob=0.0,
pad_token_id=alphabet.padding_idx,
emb_layer_norm_before=emb_layer_norm_before,
token_dropout=token_dropout,
position_embedding_type=position_embedding_type,
is_folding_model=is_folding_model,
esmfold_config=esmfold_config,
vocab_list=vocab_list,
)
if classification_head:
config.num_labels = esm.classification_heads["mnli"].out_proj.weight.shape[0]
print("Our ESM config:", config)
if model.startswith("esmfold"):
model_class = EsmForProteinFolding
elif classification_head:
model_class = EsmForSequenceClassification
else:
model_class = EsmForMaskedLM
model = model_class(config)
model.eval()
# Now let's copy all the weights.
# Embeddings
model.esm.embeddings.word_embeddings.weight = original_esm_model.embed_tokens.weight
if position_embedding_type == "absolute":
model.esm.embeddings.position_embeddings.weight = original_esm_model.embed_positions.weight
if config.emb_layer_norm_before:
model.esm.embeddings.layer_norm.weight = original_esm_model.emb_layer_norm_before.weight
model.esm.embeddings.layer_norm.bias = original_esm_model.emb_layer_norm_before.bias
model.esm.encoder.emb_layer_norm_after.weight = original_esm_model.emb_layer_norm_after.weight
model.esm.encoder.emb_layer_norm_after.bias = original_esm_model.emb_layer_norm_after.bias
for i in range(config.num_hidden_layers):
# Encoder: start of layer
layer: EsmLayer = model.esm.encoder.layer[i]
# esm_layer: TransformerSentenceEncoderLayer = original_esm_model.layers[i]
esm_layer = original_esm_model.layers[i]
# self attention
self_attn: EsmSelfAttention = layer.attention.self
assert (
esm_layer.self_attn.k_proj.weight.data.shape
== esm_layer.self_attn.q_proj.weight.data.shape
== esm_layer.self_attn.v_proj.weight.data.shape
== torch.Size((config.hidden_size, config.hidden_size))
)
self_attn.query.weight.data = esm_layer.self_attn.q_proj.weight
self_attn.query.bias.data = esm_layer.self_attn.q_proj.bias
self_attn.key.weight.data = esm_layer.self_attn.k_proj.weight
self_attn.key.bias.data = esm_layer.self_attn.k_proj.bias
self_attn.value.weight.data = esm_layer.self_attn.v_proj.weight
self_attn.value.bias.data = esm_layer.self_attn.v_proj.bias
if getattr(esm_layer.self_attn, "rot_emb", None) is not None:
# Matt: Although inv_freq is not a trainable weight, it is computed at model init and cached.
# During the training of ESM-2 the model was converted to float16 precision, which also converts
# the inv_freq tensor, and the loss of precision remains even if the model is loaded later as float32.
# If we recompute inv_freq without this loss of precision then we will get subtly different rotary
# embeddings, which are enough to cause significant discrepancies in model outputs. To avoid this,
# we make sure the new model copies the data from the old inv_freq.
self_attn.rotary_embeddings.inv_freq.data = esm_layer.self_attn.rot_emb.inv_freq
# LayerNorm changes for pre-activation
layer.attention.LayerNorm.weight = esm_layer.self_attn_layer_norm.weight
layer.attention.LayerNorm.bias = esm_layer.self_attn_layer_norm.bias
layer.LayerNorm.weight = esm_layer.final_layer_norm.weight
layer.LayerNorm.bias = esm_layer.final_layer_norm.bias
# self-attention output
self_output: EsmSelfOutput = layer.attention.output
assert self_output.dense.weight.shape == esm_layer.self_attn.out_proj.weight.shape
self_output.dense.weight = esm_layer.self_attn.out_proj.weight
self_output.dense.bias = esm_layer.self_attn.out_proj.bias
# intermediate
intermediate: EsmIntermediate = layer.intermediate
assert intermediate.dense.weight.shape == esm_layer.fc1.weight.shape
intermediate.dense.weight = esm_layer.fc1.weight
intermediate.dense.bias = esm_layer.fc1.bias
# output
bert_output: EsmOutput = layer.output
assert bert_output.dense.weight.shape == esm_layer.fc2.weight.shape
bert_output.dense.weight = esm_layer.fc2.weight
bert_output.dense.bias = esm_layer.fc2.bias
# end of layer
if is_folding_model:
model.esm_s_combine.data = esm.esm_s_combine.data
transfer_and_check_weights(esm.embedding, model.embedding)
transfer_and_check_weights(esm.esm_s_mlp, model.esm_s_mlp)
transfer_and_check_weights(esm.trunk, model.trunk)
transfer_and_check_weights(esm.distogram_head, model.distogram_head)
transfer_and_check_weights(esm.ptm_head, model.ptm_head)
transfer_and_check_weights(esm.lm_head, model.lm_head)
transfer_and_check_weights(esm.lddt_head, model.lddt_head)
elif classification_head:
model.classifier.dense.weight = esm.esm.classification_heads["mnli"].dense.weight
model.classifier.dense.bias = esm.classification_heads["mnli"].dense.bias
model.classifier.out_proj.weight = esm.classification_heads["mnli"].out_proj.weight
model.classifier.out_proj.bias = esm.classification_heads["mnli"].out_proj.bias
else:
# LM Head
model.lm_head.dense.weight = esm.lm_head.dense.weight
model.lm_head.dense.bias = esm.lm_head.dense.bias
model.lm_head.layer_norm.weight = esm.lm_head.layer_norm.weight
model.lm_head.layer_norm.bias = esm.lm_head.layer_norm.bias
model.lm_head.decoder.weight = esm.lm_head.weight
model.lm_head.bias = esm.lm_head.bias
# Let's check that we get the same results.
batch_converter = alphabet.get_batch_converter()
# Prepare data (first 2 sequences from ESMStructuralSplitDataset superfamily / 4)
if is_folding_model:
# Folding models aren't trained on masked inputs and don't like mask tokens.
sample_data = SAMPLE_DATA[:2]
else:
sample_data = SAMPLE_DATA
batch_labels, batch_strs, batch_tokens = batch_converter(sample_data)
# Prepare tokenizer and make sure it matches
with TemporaryDirectory() as tempdir:
vocab = "\n".join(alphabet.all_toks)
vocab_file = Path(tempdir) / "vocab.txt"
vocab_file.write_text(vocab)
hf_tokenizer = EsmTokenizer(vocab_file=str(vocab_file))
hf_tokens = hf_tokenizer([row[1] for row in sample_data], return_tensors="pt", padding=True)
success = torch.all(hf_tokens["input_ids"] == batch_tokens)
print("Do both models tokenizers output the same tokens?", "🔥" if success else "💩")
if not success:
raise Exception("Tokenization does not match!")
with torch.no_grad():
if is_folding_model:
# Let's test the model in parts
# ESMFold always converts the ESM stem to float16, which requires float16 ops
# that don't exist on CPU. Therefore, to test it we need to run it on GPU. However,
# ESMFold is what we in the community call a "big boy" and so we desperately avoid putting both the
# original and the converted model on the GPU at the same time.
our_output = model.cuda()(
input_ids=hf_tokens["input_ids"].cuda(), attention_mask=hf_tokens["attention_mask"].cuda()
)
their_output = esm.cuda()(hf_tokens["input_ids"].cuda(), hf_tokens["attention_mask"].cuda())
else:
our_output = model(**hf_tokens, output_hidden_states=True)
our_output = our_output["logits"]
if classification_head:
their_output = esm.model.classification_heads["mnli"](esm.extract_features(batch_tokens))
else:
their_output = esm(hf_tokens["input_ids"], repr_layers=list(range(999)))
their_output = their_output["logits"]
if is_folding_model:
max_absolute_diff = torch.max(torch.abs(our_output["positions"] - their_output["positions"])).item()
success = torch.allclose(our_output["positions"], their_output["positions"], atol=1e-5)
else:
max_absolute_diff = torch.max(torch.abs(our_output - their_output)).item()
success = torch.allclose(our_output, their_output, atol=1e-5)
print(f"max_absolute_diff = {max_absolute_diff}") # ~ 1e-5
print("Do both models output the same tensors?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
pathlib.Path(pytorch_dump_folder_path).mkdir(parents=True, exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
reloaded = model_class.from_pretrained(pytorch_dump_folder_path).cuda()
reloaded_output = reloaded(
input_ids=hf_tokens["input_ids"].cuda(), attention_mask=hf_tokens["attention_mask"].cuda()
)
if is_folding_model:
max_absolute_diff = torch.max(torch.abs(our_output["positions"] - reloaded_output["positions"])).item()
success = torch.allclose(our_output["positions"], their_output["positions"], atol=1e-6)
else:
max_absolute_diff = torch.max(torch.abs(our_output - reloaded_output["logits"])).item()
success = torch.allclose(our_output, reloaded_output["logits"], atol=1e-6)
print(f"max_absolute_diff = {max_absolute_diff}")
print("Does the model output the same tensors after reloading?", "🔥" if success else "💩")
if not success:
raise Exception("Something went wRoNg")
print(f"Saving tokenizer to {pytorch_dump_folder_path}")
hf_tokenizer.save_pretrained(pytorch_dump_folder_path)
if push_to_repo:
model.push_to_hub(repo_id=push_to_repo, use_auth_token=auth_token)
hf_tokenizer.push_to_hub(repo_id=push_to_repo, use_auth_token=auth_token) | Copy/paste/tweak esm's weights to our BERT structure. |
10,947 | import os
from typing import List, Optional, Union
from ...tokenization_utils import PreTrainedTokenizer
from ...tokenization_utils_base import AddedToken
from ...utils import logging
def load_vocab_file(vocab_file):
with open(vocab_file, "r") as f:
lines = f.read().splitlines()
return [l.strip() for l in lines] | null |
10,948 | from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from tensorflow.keras.activations import gelu
from tensorflow.keras.layers import Dense, Dropout, Embedding, Layer, LayerNormalization
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPoolingAndCrossAttentions,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
get_tf_activation,
shape_list,
unpack_inputs,
)
from ...tf_utils import stable_softmax
from ...utils import logging
from .configuration_esm import EsmConfig
def rotate_half(x):
x1, x2 = tf.split(x, 2, axis=-1)
return tf.concat((-x2, x1), axis=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : tf.shape(x)[-2], :]
sin = sin[:, :, : tf.shape(x)[-2], :]
return (x * cos) + (rotate_half(x) * sin) | null |
10,949 | from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from tensorflow.keras.activations import gelu
from tensorflow.keras.layers import Dense, Dropout, Embedding, Layer, LayerNormalization
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPoolingAndCrossAttentions,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
get_tf_activation,
shape_list,
unpack_inputs,
)
from ...tf_utils import stable_softmax
from ...utils import logging
from .configuration_esm import EsmConfig
The provided code snippet includes necessary dependencies for implementing the `create_position_ids_from_input_ids` function. Write a Python function `def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0)` to solve the following problem:
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: tf.Tensor x: Returns: tf.Tensor
Here is the function:
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: tf.Tensor x:
Returns: tf.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = tf.cast(input_ids != padding_idx, tf.int64)
incremental_indices = (tf.cumsum(mask, axis=1) + past_key_values_length) * mask
return incremental_indices + padding_idx | Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: tf.Tensor x: Returns: tf.Tensor |
10,950 | import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import logging
from .configuration_esm import EsmConfig
def rotate_half(x):
x1, x2 = x.chunk(2, dim=-1)
return torch.cat((-x2, x1), dim=-1)
def apply_rotary_pos_emb(x, cos, sin):
cos = cos[:, :, : x.shape[-2], :]
sin = sin[:, :, : x.shape[-2], :]
return (x * cos) + (rotate_half(x) * sin) | null |
10,951 | import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import logging
from .configuration_esm import EsmConfig
The provided code snippet includes necessary dependencies for implementing the `gelu` function. Write a Python function `def gelu(x)` to solve the following problem:
This is the gelu implementation from the original ESM repo. Using F.gelu yields subtly wrong results.
Here is the function:
def gelu(x):
"""
This is the gelu implementation from the original ESM repo. Using F.gelu yields subtly wrong results.
"""
return x * 0.5 * (1.0 + torch.erf(x / math.sqrt(2.0))) | This is the gelu implementation from the original ESM repo. Using F.gelu yields subtly wrong results. |
10,952 | import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import logging
from .configuration_esm import EsmConfig
The provided code snippet includes necessary dependencies for implementing the `create_position_ids_from_input_ids` function. Write a Python function `def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0)` to solve the following problem:
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: torch.Tensor x: Returns: torch.Tensor
Here is the function:
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx | Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: torch.Tensor x: Returns: torch.Tensor |
10,953 | import math
import sys
from dataclasses import dataclass
from functools import partial
from typing import Callable, Dict, List, Optional, Sequence, Tuple, Union
import numpy as np
import torch
import torch.nn as nn
from torch.nn import LayerNorm
from ...deepspeed import is_deepspeed_available
from ...modeling_outputs import ModelOutput
from ...utils import (
ContextManagers,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
logging,
replace_return_docstrings,
)
from .configuration_esm import EsmConfig
from .modeling_esm import ESM_START_DOCSTRING, EsmModel, EsmPreTrainedModel
from .openfold_utils import (
OFProtein,
Rigid,
Rotation,
atom14_to_atom37,
chunk_layer,
compute_predicted_aligned_error,
compute_tm,
frames_and_literature_positions_to_atom14_pos,
make_atom14_masks,
residue_constants,
to_pdb,
torsion_angles_to_frames,
)
def is_fp16_enabled():
# Autocast world
fp16_enabled = torch.get_autocast_gpu_dtype() == torch.float16
fp16_enabled = fp16_enabled and torch.is_autocast_enabled()
return fp16_enabled | null |
10,954 | import math
import sys
from dataclasses import dataclass
from functools import partial
from typing import Callable, Dict, List, Optional, Sequence, Tuple, Union
import numpy as np
import torch
import torch.nn as nn
from torch.nn import LayerNorm
from ...deepspeed import is_deepspeed_available
from ...modeling_outputs import ModelOutput
from ...utils import (
ContextManagers,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
logging,
replace_return_docstrings,
)
from .configuration_esm import EsmConfig
from .modeling_esm import ESM_START_DOCSTRING, EsmModel, EsmPreTrainedModel
from .openfold_utils import (
OFProtein,
Rigid,
Rotation,
atom14_to_atom37,
chunk_layer,
compute_predicted_aligned_error,
compute_tm,
frames_and_literature_positions_to_atom14_pos,
make_atom14_masks,
residue_constants,
to_pdb,
torsion_angles_to_frames,
)
The provided code snippet includes necessary dependencies for implementing the `collate_dense_tensors` function. Write a Python function `def collate_dense_tensors(samples: List[torch.Tensor], pad_v: float = 0) -> torch.Tensor` to solve the following problem:
Takes a list of tensors with the following dimensions: [(d_11, ..., d_1K), (d_21, ..., d_2K), ..., (d_N1, ..., d_NK)] and stack + pads them into a single tensor of: (N, max_i=1,N { d_i1 }, ..., max_i=1,N {diK})
Here is the function:
def collate_dense_tensors(samples: List[torch.Tensor], pad_v: float = 0) -> torch.Tensor:
"""
Takes a list of tensors with the following dimensions:
[(d_11, ..., d_1K),
(d_21, ..., d_2K), ..., (d_N1, ..., d_NK)]
and stack + pads them into a single tensor of:
(N, max_i=1,N { d_i1 }, ..., max_i=1,N {diK})
"""
if len(samples) == 0:
return torch.Tensor()
if len(set(x.dim() for x in samples)) != 1:
raise RuntimeError(f"Samples has varying dimensions: {[x.dim() for x in samples]}")
(device,) = tuple(set(x.device for x in samples)) # assumes all on same device
max_shape = [max(lst) for lst in zip(*[x.shape for x in samples])]
result = torch.empty(len(samples), *max_shape, dtype=samples[0].dtype, device=device)
result.fill_(pad_v)
for i in range(len(samples)):
result_i = result[i]
t = samples[i]
result_i[tuple(slice(0, k) for k in t.shape)] = t
return result | Takes a list of tensors with the following dimensions: [(d_11, ..., d_1K), (d_21, ..., d_2K), ..., (d_N1, ..., d_NK)] and stack + pads them into a single tensor of: (N, max_i=1,N { d_i1 }, ..., max_i=1,N {diK}) |
10,955 | import math
import sys
from dataclasses import dataclass
from functools import partial
from typing import Callable, Dict, List, Optional, Sequence, Tuple, Union
import numpy as np
import torch
import torch.nn as nn
from torch.nn import LayerNorm
from ...deepspeed import is_deepspeed_available
from ...modeling_outputs import ModelOutput
from ...utils import (
ContextManagers,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
logging,
replace_return_docstrings,
)
from .configuration_esm import EsmConfig
from .modeling_esm import ESM_START_DOCSTRING, EsmModel, EsmPreTrainedModel
from .openfold_utils import (
OFProtein,
Rigid,
Rotation,
atom14_to_atom37,
chunk_layer,
compute_predicted_aligned_error,
compute_tm,
frames_and_literature_positions_to_atom14_pos,
make_atom14_masks,
residue_constants,
to_pdb,
torsion_angles_to_frames,
)
def flatten_final_dims(t: torch.Tensor, no_dims: int):
return t.reshape(t.shape[:-no_dims] + (-1,)) | null |
10,956 | import math
import sys
from dataclasses import dataclass
from functools import partial
from typing import Callable, Dict, List, Optional, Sequence, Tuple, Union
import numpy as np
import torch
import torch.nn as nn
from torch.nn import LayerNorm
from ...deepspeed import is_deepspeed_available
from ...modeling_outputs import ModelOutput
from ...utils import (
ContextManagers,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
logging,
replace_return_docstrings,
)
from .configuration_esm import EsmConfig
from .modeling_esm import ESM_START_DOCSTRING, EsmModel, EsmPreTrainedModel
from .openfold_utils import (
OFProtein,
Rigid,
Rotation,
atom14_to_atom37,
chunk_layer,
compute_predicted_aligned_error,
compute_tm,
frames_and_literature_positions_to_atom14_pos,
make_atom14_masks,
residue_constants,
to_pdb,
torsion_angles_to_frames,
)
def permute_final_dims(tensor: torch.Tensor, inds: List[int]):
zero_index = -1 * len(inds)
first_inds = list(range(len(tensor.shape[:zero_index])))
return tensor.permute(first_inds + [zero_index + i for i in inds]) | null |
10,957 | import math
import sys
from dataclasses import dataclass
from functools import partial
from typing import Callable, Dict, List, Optional, Sequence, Tuple, Union
import numpy as np
import torch
import torch.nn as nn
from torch.nn import LayerNorm
from ...deepspeed import is_deepspeed_available
from ...modeling_outputs import ModelOutput
from ...utils import (
ContextManagers,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_scipy_available,
logging,
replace_return_docstrings,
)
from .configuration_esm import EsmConfig
from .modeling_esm import ESM_START_DOCSTRING, EsmModel, EsmPreTrainedModel
from .openfold_utils import (
OFProtein,
Rigid,
Rotation,
atom14_to_atom37,
chunk_layer,
compute_predicted_aligned_error,
compute_tm,
frames_and_literature_positions_to_atom14_pos,
make_atom14_masks,
residue_constants,
to_pdb,
torsion_angles_to_frames,
)
def dict_multimap(fn, dicts):
first = dicts[0]
new_dict = {}
for k, v in first.items():
all_v = [d[k] for d in dicts]
if type(v) is dict:
new_dict[k] = dict_multimap(fn, all_v)
else:
new_dict[k] = fn(all_v)
return new_dict | null |
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