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11,173 | import argparse
import json
import pickle
from pathlib import Path
import numpy as np
import torch
from PIL import Image
import haiku as hk
import requests
from huggingface_hub import hf_hub_download
from transformers import (
PerceiverConfig,
PerceiverFeatureExtractor,
PerceiverForImageClassificationConvProcessing,
PerceiverForImageClassificationFourier,
PerceiverForImageClassificationLearned,
PerceiverForMaskedLM,
PerceiverForMultimodalAutoencoding,
PerceiverForOpticalFlow,
PerceiverTokenizer,
)
from transformers.utils import logging
def prepare_img():
# We will verify our results on an image of a dog
url = "https://storage.googleapis.com/perceiver_io/dalmation.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
def rename_keys(state_dict, architecture):
for name in list(state_dict):
param = state_dict.pop(name)
# PREPROCESSORS
# rename text preprocessor embeddings (for MLM model)
name = name.replace("embed/embeddings", "input_preprocessor.embeddings.weight")
if name.startswith("trainable_position_encoding/pos_embs"):
name = name.replace(
"trainable_position_encoding/pos_embs", "input_preprocessor.position_embeddings.weight"
)
# rename image preprocessor embeddings (for image classification model with learned position embeddings)
name = name.replace("image_preprocessor/~/conv2_d/w", "input_preprocessor.convnet_1x1.weight")
name = name.replace("image_preprocessor/~/conv2_d/b", "input_preprocessor.convnet_1x1.bias")
name = name.replace(
"image_preprocessor/~_build_network_inputs/trainable_position_encoding/pos_embs",
"input_preprocessor.position_embeddings.position_embeddings",
)
name = name.replace(
"image_preprocessor/~_build_network_inputs/position_encoding_projector/linear/w",
"input_preprocessor.positions_projection.weight",
)
name = name.replace(
"image_preprocessor/~_build_network_inputs/position_encoding_projector/linear/b",
"input_preprocessor.positions_projection.bias",
)
# rename image preprocessor embeddings (for image classification model with conv processing)
if "counter" in name or "hidden" in name:
continue
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/conv/w", "input_preprocessor.convnet.conv.weight"
)
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/batchnorm/offset", "input_preprocessor.convnet.batchnorm.bias"
)
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/batchnorm/scale", "input_preprocessor.convnet.batchnorm.weight"
)
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/batchnorm/~/mean_ema/average",
"input_preprocessor.convnet.batchnorm.running_mean",
)
name = name.replace(
"image_preprocessor/~/conv2_d_downsample/~/batchnorm/~/var_ema/average",
"input_preprocessor.convnet.batchnorm.running_var",
)
# rename image preprocessor embeddings (for optical flow model)
name = name.replace("image_preprocessor/patches_linear/b", "input_preprocessor.conv_after_patches.bias")
name = name.replace("image_preprocessor/patches_linear/w", "input_preprocessor.conv_after_patches.weight")
# rename multimodal preprocessor embeddings
name = name.replace("multimodal_preprocessor/audio_mask_token/pos_embs", "input_preprocessor.mask.audio")
name = name.replace("multimodal_preprocessor/audio_padding/pos_embs", "input_preprocessor.padding.audio")
name = name.replace("multimodal_preprocessor/image_mask_token/pos_embs", "input_preprocessor.mask.image")
name = name.replace("multimodal_preprocessor/image_padding/pos_embs", "input_preprocessor.padding.image")
name = name.replace("multimodal_preprocessor/label_mask_token/pos_embs", "input_preprocessor.mask.label")
name = name.replace("multimodal_preprocessor/label_padding/pos_embs", "input_preprocessor.padding.label")
# DECODERS
# rename prefix of decoders
# multimodal autoencoding model
name = name.replace(
"multimodal_decoder/~/basic_decoder/cross_attention/", "decoder.decoder.decoding_cross_attention."
)
name = name.replace("multimodal_decoder/~decoder_query/audio_padding/pos_embs", "decoder.padding.audio")
name = name.replace("multimodal_decoder/~decoder_query/image_padding/pos_embs", "decoder.padding.image")
name = name.replace("multimodal_decoder/~decoder_query/label_padding/pos_embs", "decoder.padding.label")
name = name.replace("multimodal_decoder/~/basic_decoder/output/b", "decoder.decoder.final_layer.bias")
name = name.replace("multimodal_decoder/~/basic_decoder/output/w", "decoder.decoder.final_layer.weight")
if architecture == "multimodal_autoencoding":
name = name.replace(
"classification_decoder/~/basic_decoder/~/trainable_position_encoding/pos_embs",
"decoder.modalities.label.decoder.output_position_encodings.position_embeddings",
)
# flow model
name = name.replace(
"flow_decoder/~/basic_decoder/cross_attention/", "decoder.decoder.decoding_cross_attention."
)
name = name.replace("flow_decoder/~/basic_decoder/output/w", "decoder.decoder.final_layer.weight")
name = name.replace("flow_decoder/~/basic_decoder/output/b", "decoder.decoder.final_layer.bias")
# image models
name = name.replace(
"classification_decoder/~/basic_decoder/~/trainable_position_encoding/pos_embs",
"decoder.decoder.output_position_encodings.position_embeddings",
)
name = name.replace(
"basic_decoder/~/trainable_position_encoding/pos_embs",
"decoder.output_position_encodings.position_embeddings",
)
name = name.replace(
"classification_decoder/~/basic_decoder/cross_attention/", "decoder.decoder.decoding_cross_attention."
)
name = name.replace("classification_decoder/~/basic_decoder/output/b", "decoder.decoder.final_layer.bias")
name = name.replace("classification_decoder/~/basic_decoder/output/w", "decoder.decoder.final_layer.weight")
name = name = name.replace("classification_decoder/~/basic_decoder/~/", "decoder.decoder.")
name = name.replace("basic_decoder/cross_attention/", "decoder.decoding_cross_attention.")
name = name.replace("basic_decoder/~/", "decoder.")
# POSTPROCESSORS
name = name.replace(
"projection_postprocessor/linear/b", "output_postprocessor.modalities.image.classifier.bias"
)
name = name.replace(
"projection_postprocessor/linear/w", "output_postprocessor.modalities.image.classifier.weight"
)
name = name.replace(
"classification_postprocessor/linear/b", "output_postprocessor.modalities.label.classifier.bias"
)
name = name.replace(
"classification_postprocessor/linear/w", "output_postprocessor.modalities.label.classifier.weight"
)
name = name.replace("audio_postprocessor/linear/b", "output_postprocessor.modalities.audio.classifier.bias")
name = name.replace("audio_postprocessor/linear/w", "output_postprocessor.modalities.audio.classifier.weight")
# PERCEIVER MODEL
# rename latent embeddings
name = name.replace("perceiver_encoder/~/trainable_position_encoding/pos_embs", "embeddings.latents")
# rename latent embeddings (for multimodal model)
name = name.replace("encoder/~/trainable_position_encoding/pos_embs", "embeddings.latents")
# rename prefixes
if name.startswith("perceiver_encoder/~/"):
if "self_attention" in name:
suffix = "self_attends."
else:
suffix = ""
name = name.replace("perceiver_encoder/~/", "encoder." + suffix)
if name.startswith("encoder/~/"):
if "self_attention" in name:
suffix = "self_attends."
else:
suffix = ""
name = name.replace("encoder/~/", "encoder." + suffix)
# rename layernorm parameters
if "offset" in name:
name = name.replace("offset", "bias")
if "scale" in name:
name = name.replace("scale", "weight")
# in HuggingFace, the layernorm in between attention + MLP is just called "layernorm"
# rename layernorm in between attention + MLP of cross-attention
if "cross_attention" in name and "layer_norm_2" in name:
name = name.replace("layer_norm_2", "layernorm")
# rename layernorm in between attention + MLP of self-attention
if "self_attention" in name and "layer_norm_1" in name:
name = name.replace("layer_norm_1", "layernorm")
# in HuggingFace, the layernorms for queries + keys are called "layernorm1" and "layernorm2"
if "cross_attention" in name and "layer_norm_1" in name:
name = name.replace("layer_norm_1", "attention.self.layernorm2")
if "cross_attention" in name and "layer_norm" in name:
name = name.replace("layer_norm", "attention.self.layernorm1")
if "self_attention" in name and "layer_norm" in name:
name = name.replace("layer_norm", "attention.self.layernorm1")
# rename special characters by dots
name = name.replace("-", ".")
name = name.replace("/", ".")
# rename keys, queries, values and output of attention layers
if ("cross_attention" in name or "self_attention" in name) and "mlp" not in name:
if "linear.b" in name:
name = name.replace("linear.b", "self.query.bias")
if "linear.w" in name:
name = name.replace("linear.w", "self.query.weight")
if "linear_1.b" in name:
name = name.replace("linear_1.b", "self.key.bias")
if "linear_1.w" in name:
name = name.replace("linear_1.w", "self.key.weight")
if "linear_2.b" in name:
name = name.replace("linear_2.b", "self.value.bias")
if "linear_2.w" in name:
name = name.replace("linear_2.w", "self.value.weight")
if "linear_3.b" in name:
name = name.replace("linear_3.b", "output.dense.bias")
if "linear_3.w" in name:
name = name.replace("linear_3.w", "output.dense.weight")
if "self_attention_" in name:
name = name.replace("self_attention_", "")
if "self_attention" in name:
name = name.replace("self_attention", "0")
# rename dense layers of 2-layer MLP
if "mlp" in name:
if "linear.b" in name:
name = name.replace("linear.b", "dense1.bias")
if "linear.w" in name:
name = name.replace("linear.w", "dense1.weight")
if "linear_1.b" in name:
name = name.replace("linear_1.b", "dense2.bias")
if "linear_1.w" in name:
name = name.replace("linear_1.w", "dense2.weight")
# finally, TRANSPOSE if kernel and not embedding layer, and set value
if name[-6:] == "weight" and "embeddings" not in name:
param = np.transpose(param)
# if batchnorm, we need to squeeze it
if "batchnorm" in name:
param = np.squeeze(param)
if "embedding_decoder" not in name:
state_dict["perceiver." + name] = torch.from_numpy(param)
else:
state_dict[name] = torch.from_numpy(param)
The provided code snippet includes necessary dependencies for implementing the `convert_perceiver_checkpoint` function. Write a Python function `def convert_perceiver_checkpoint(pickle_file, pytorch_dump_folder_path, architecture="MLM")` to solve the following problem:
Copy/paste/tweak model's weights to our Perceiver structure.
Here is the function:
def convert_perceiver_checkpoint(pickle_file, pytorch_dump_folder_path, architecture="MLM"):
"""
Copy/paste/tweak model's weights to our Perceiver structure.
"""
# load parameters as FlatMapping data structure
with open(pickle_file, "rb") as f:
checkpoint = pickle.loads(f.read())
state = None
if isinstance(checkpoint, dict) and architecture in [
"image_classification",
"image_classification_fourier",
"image_classification_conv",
]:
# the image classification_conv checkpoint also has batchnorm states (running_mean and running_var)
params = checkpoint["params"]
state = checkpoint["state"]
else:
params = checkpoint
# turn into initial state dict
state_dict = dict()
for scope_name, parameters in hk.data_structures.to_mutable_dict(params).items():
for param_name, param in parameters.items():
state_dict[scope_name + "/" + param_name] = param
if state is not None:
# add state variables
for scope_name, parameters in hk.data_structures.to_mutable_dict(state).items():
for param_name, param in parameters.items():
state_dict[scope_name + "/" + param_name] = param
# rename keys
rename_keys(state_dict, architecture=architecture)
# load HuggingFace model
config = PerceiverConfig()
subsampling = None
repo_id = "huggingface/label-files"
if architecture == "MLM":
config.qk_channels = 8 * 32
config.v_channels = 1280
model = PerceiverForMaskedLM(config)
elif "image_classification" in architecture:
config.num_latents = 512
config.d_latents = 1024
config.d_model = 512
config.num_blocks = 8
config.num_self_attends_per_block = 6
config.num_cross_attention_heads = 1
config.num_self_attention_heads = 8
config.qk_channels = None
config.v_channels = None
# set labels
config.num_labels = 1000
filename = "imagenet-1k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
if architecture == "image_classification":
config.image_size = 224
model = PerceiverForImageClassificationLearned(config)
elif architecture == "image_classification_fourier":
config.d_model = 261
model = PerceiverForImageClassificationFourier(config)
elif architecture == "image_classification_conv":
config.d_model = 322
model = PerceiverForImageClassificationConvProcessing(config)
else:
raise ValueError(f"Architecture {architecture} not supported")
elif architecture == "optical_flow":
config.num_latents = 2048
config.d_latents = 512
config.d_model = 322
config.num_blocks = 1
config.num_self_attends_per_block = 24
config.num_self_attention_heads = 16
config.num_cross_attention_heads = 1
model = PerceiverForOpticalFlow(config)
elif architecture == "multimodal_autoencoding":
config.num_latents = 28 * 28 * 1
config.d_latents = 512
config.d_model = 704
config.num_blocks = 1
config.num_self_attends_per_block = 8
config.num_self_attention_heads = 8
config.num_cross_attention_heads = 1
config.num_labels = 700
# define dummy inputs + subsampling (as each forward pass is only on a chunk of image + audio data)
images = torch.randn((1, 16, 3, 224, 224))
audio = torch.randn((1, 30720, 1))
nchunks = 128
image_chunk_size = np.prod((16, 224, 224)) // nchunks
audio_chunk_size = audio.shape[1] // config.samples_per_patch // nchunks
# process the first chunk
chunk_idx = 0
subsampling = {
"image": torch.arange(image_chunk_size * chunk_idx, image_chunk_size * (chunk_idx + 1)),
"audio": torch.arange(audio_chunk_size * chunk_idx, audio_chunk_size * (chunk_idx + 1)),
"label": None,
}
model = PerceiverForMultimodalAutoencoding(config)
# set labels
filename = "kinetics700-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
else:
raise ValueError(f"Architecture {architecture} not supported")
model.eval()
# load weights
model.load_state_dict(state_dict)
# prepare dummy input
input_mask = None
if architecture == "MLM":
tokenizer = PerceiverTokenizer.from_pretrained("/Users/NielsRogge/Documents/Perceiver/Tokenizer files")
text = "This is an incomplete sentence where some words are missing."
encoding = tokenizer(text, padding="max_length", return_tensors="pt")
# mask " missing.". Note that the model performs much better if the masked chunk starts with a space.
encoding.input_ids[0, 51:60] = tokenizer.mask_token_id
inputs = encoding.input_ids
input_mask = encoding.attention_mask
elif architecture in ["image_classification", "image_classification_fourier", "image_classification_conv"]:
feature_extractor = PerceiverFeatureExtractor()
image = prepare_img()
encoding = feature_extractor(image, return_tensors="pt")
inputs = encoding.pixel_values
elif architecture == "optical_flow":
inputs = torch.randn(1, 2, 27, 368, 496)
elif architecture == "multimodal_autoencoding":
images = torch.randn((1, 16, 3, 224, 224))
audio = torch.randn((1, 30720, 1))
inputs = dict(image=images, audio=audio, label=torch.zeros((images.shape[0], 700)))
# forward pass
if architecture == "multimodal_autoencoding":
outputs = model(inputs=inputs, attention_mask=input_mask, subsampled_output_points=subsampling)
else:
outputs = model(inputs=inputs, attention_mask=input_mask)
logits = outputs.logits
# verify logits
if not isinstance(logits, dict):
print("Shape of logits:", logits.shape)
else:
for k, v in logits.items():
print(f"Shape of logits of modality {k}", v.shape)
if architecture == "MLM":
expected_slice = torch.tensor(
[[-11.8336, -11.6850, -11.8483], [-12.8149, -12.5863, -12.7904], [-12.8440, -12.6410, -12.8646]]
)
assert torch.allclose(logits[0, :3, :3], expected_slice)
masked_tokens_predictions = logits[0, 51:60].argmax(dim=-1).tolist()
expected_list = [38, 115, 111, 121, 121, 111, 116, 109, 52]
assert masked_tokens_predictions == expected_list
print("Greedy predictions:")
print(masked_tokens_predictions)
print()
print("Predicted string:")
print(tokenizer.decode(masked_tokens_predictions))
elif architecture in ["image_classification", "image_classification_fourier", "image_classification_conv"]:
print("Predicted class:", model.config.id2label[logits.argmax(-1).item()])
# Finally, save files
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to our Perceiver structure. |
11,174 | import abc
import math
from dataclasses import dataclass
from functools import reduce
from operator import __add__
from typing import Any, Callable, Dict, List, Mapping, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_perceiver import PerceiverConfig
class PerceiverTrainablePositionEncoding(PerceiverAbstractPositionEncoding):
"""Trainable position encoding."""
def __init__(self, index_dims, num_channels=128):
super().__init__()
self._num_channels = num_channels
self._index_dims = index_dims
index_dim = np.prod(index_dims)
self.position_embeddings = nn.Parameter(torch.randn(index_dim, num_channels))
def num_dimensions(self) -> int:
if isinstance(self._index_dims, int):
return 1
return len(self._index_dims)
def output_size(self, *args, **kwargs) -> int:
return self._num_channels
def forward(self, batch_size: int) -> torch.Tensor:
position_embeddings = self.position_embeddings
if batch_size is not None:
position_embeddings = position_embeddings.expand(batch_size, -1, -1)
return position_embeddings
class PerceiverFourierPositionEncoding(PerceiverAbstractPositionEncoding):
"""Fourier (Sinusoidal) position encoding."""
def __init__(self, num_bands, max_resolution, concat_pos=True, sine_only=False):
super().__init__()
self.num_bands = num_bands
self.max_resolution = max_resolution
self.concat_pos = concat_pos
self.sine_only = sine_only
def num_dimensions(self) -> int:
return len(self.max_resolution)
def output_size(self):
"""Returns size of positional encodings last dimension."""
num_dims = len(self.max_resolution)
encoding_size = self.num_bands * num_dims
if not self.sine_only:
encoding_size *= 2
if self.concat_pos:
encoding_size += self.num_dimensions
return encoding_size
def forward(
self, index_dims: List[int], batch_size: int, device, pos: torch.FloatTensor = None
) -> torch.FloatTensor:
pos = _check_or_build_spatial_positions(pos, index_dims, batch_size)
fourier_pos_enc = generate_fourier_features(
pos,
num_bands=self.num_bands,
max_resolution=self.max_resolution,
concat_pos=self.concat_pos,
sine_only=self.sine_only,
).to(device)
return fourier_pos_enc
The provided code snippet includes necessary dependencies for implementing the `build_position_encoding` function. Write a Python function `def build_position_encoding( position_encoding_type, out_channels=None, project_pos_dim=-1, trainable_position_encoding_kwargs=None, fourier_position_encoding_kwargs=None, )` to solve the following problem:
Builds the position encoding. Args: - out_channels: refers to the number of channels of the position encodings. - project_pos_dim: if specified, will project the position encodings to this dimension.
Here is the function:
def build_position_encoding(
position_encoding_type,
out_channels=None,
project_pos_dim=-1,
trainable_position_encoding_kwargs=None,
fourier_position_encoding_kwargs=None,
):
"""
Builds the position encoding.
Args:
- out_channels: refers to the number of channels of the position encodings.
- project_pos_dim: if specified, will project the position encodings to this dimension.
"""
if position_encoding_type == "trainable":
if not trainable_position_encoding_kwargs:
raise ValueError("Make sure to pass trainable_position_encoding_kwargs")
output_pos_enc = PerceiverTrainablePositionEncoding(**trainable_position_encoding_kwargs)
elif position_encoding_type == "fourier":
# We don't use the index_dims argument, as this is only known during the forward pass
if not fourier_position_encoding_kwargs:
raise ValueError("Make sure to pass fourier_position_encoding_kwargs")
output_pos_enc = PerceiverFourierPositionEncoding(**fourier_position_encoding_kwargs)
else:
raise ValueError(f"Unknown position encoding type: {position_encoding_type}.")
# Optionally, project the position encoding to a target dimension:
positions_projection = nn.Linear(out_channels, project_pos_dim) if project_pos_dim > 0 else nn.Identity()
return output_pos_enc, positions_projection | Builds the position encoding. Args: - out_channels: refers to the number of channels of the position encodings. - project_pos_dim: if specified, will project the position encodings to this dimension. |
11,175 | import abc
import math
from dataclasses import dataclass
from functools import reduce
from operator import __add__
from typing import Any, Callable, Dict, List, Mapping, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_perceiver import PerceiverConfig
ModalitySizeType = Mapping[str, int]
The provided code snippet includes necessary dependencies for implementing the `restructure` function. Write a Python function `def restructure(modality_sizes: ModalitySizeType, inputs: torch.Tensor) -> Mapping[str, torch.Tensor]` to solve the following problem:
Partitions a [B, N, C] tensor into tensors for each modality. Args: modality_sizes dict specifying the size of the modality inputs: input tensor Returns: dict mapping name of modality to its associated tensor.
Here is the function:
def restructure(modality_sizes: ModalitySizeType, inputs: torch.Tensor) -> Mapping[str, torch.Tensor]:
"""
Partitions a [B, N, C] tensor into tensors for each modality.
Args:
modality_sizes
dict specifying the size of the modality
inputs:
input tensor
Returns:
dict mapping name of modality to its associated tensor.
"""
outputs = {}
index = 0
# Apply a predictable ordering to the modalities
for modality in sorted(modality_sizes.keys()):
size = modality_sizes[modality]
inp = inputs[:, index : index + size]
index += size
outputs[modality] = inp
return outputs | Partitions a [B, N, C] tensor into tensors for each modality. Args: modality_sizes dict specifying the size of the modality inputs: input tensor Returns: dict mapping name of modality to its associated tensor. |
11,176 | import abc
import math
from dataclasses import dataclass
from functools import reduce
from operator import __add__
from typing import Any, Callable, Dict, List, Mapping, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_perceiver import PerceiverConfig
The provided code snippet includes necessary dependencies for implementing the `space_to_depth` function. Write a Python function `def space_to_depth(frames: torch.Tensor, temporal_block_size: int = 1, spatial_block_size: int = 1) -> torch.Tensor` to solve the following problem:
Space to depth transform. Rearranges blocks of spatial data, into depth. This function assumes the channels to be first, but will place the channels last after transformation. Based on https://discuss.pytorch.org/t/is-there-any-layer-like-tensorflows-space-to-depth-function/3487/15.
Here is the function:
def space_to_depth(frames: torch.Tensor, temporal_block_size: int = 1, spatial_block_size: int = 1) -> torch.Tensor:
"""
Space to depth transform. Rearranges blocks of spatial data, into depth.
This function assumes the channels to be first, but will place the channels last after transformation.
Based on https://discuss.pytorch.org/t/is-there-any-layer-like-tensorflows-space-to-depth-function/3487/15.
"""
if len(frames.shape) == 4:
batch_size, num_channels, height, width = frames.shape
# split up dimensions (height by spatial_block_size, width by spatial_block_size)
frames = frames.view(
batch_size,
num_channels,
height // spatial_block_size,
spatial_block_size,
width // spatial_block_size,
spatial_block_size,
)
# move blocks to last dimension: (batch_size, H//bs, W//bs, bs, bs, C)
frames = frames.permute(0, 2, 4, 3, 5, 1).contiguous()
# concatenate blocks along channel dimension: (batch_size, H//bs, W//bs, bs*bs*C)
frames = frames.view(
batch_size,
height // spatial_block_size,
width // spatial_block_size,
(spatial_block_size**2) * num_channels,
)
return frames
elif len(frames.shape) == 5:
batch_size, time, num_channels, height, width = frames.shape
# split up dimensions (time by temporal_block_size, height by spatial_block_size, width by spatial_block_size)
frames = frames.view(
batch_size,
time // temporal_block_size,
temporal_block_size,
num_channels,
height // spatial_block_size,
spatial_block_size,
width // spatial_block_size,
spatial_block_size,
)
# move blocks to last dimension: (batch_size, T//ts, H//bs, W//bs, ts, bs, bs, C)
frames = frames.permute(0, 1, 4, 6, 2, 5, 7, 3).contiguous()
# concatenate blocks along channel dimension: (batch_size, T//ts, H//bs, W//bs, ts*bs*bs*C)
frames = frames.view(
batch_size,
time // temporal_block_size,
height // spatial_block_size,
width // spatial_block_size,
temporal_block_size * (spatial_block_size**2) * num_channels,
)
return frames
else:
raise ValueError(
"Frames should be of rank 4 (batch, channels, height, width)"
" or rank 5 (batch, time, channels, height, width)"
) | Space to depth transform. Rearranges blocks of spatial data, into depth. This function assumes the channels to be first, but will place the channels last after transformation. Based on https://discuss.pytorch.org/t/is-there-any-layer-like-tensorflows-space-to-depth-function/3487/15. |
11,177 | import abc
import math
from dataclasses import dataclass
from functools import reduce
from operator import __add__
from typing import Any, Callable, Dict, List, Mapping, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_perceiver import PerceiverConfig
The provided code snippet includes necessary dependencies for implementing the `generate_fourier_features` function. Write a Python function `def generate_fourier_features(pos, num_bands, max_resolution=(224, 224), concat_pos=True, sine_only=False)` to solve the following problem:
Generate a Fourier frequency position encoding with linear spacing. Args: pos (`torch.LongTensor` of shape `(batch_size, sequence_length, dim)`): The Tensor containing the position of n points in d dimensional space. num_bands (`int`): The number of frequency bands (K) to use. max_resolution (`Tuple[int]`, *optional*, defaults to (224, 224)): The maximum resolution (i.e. the number of pixels per dim). A tuple representing resolution for each dimension. concat_pos (`bool`, *optional*, defaults to `True`): Whether to concatenate the input position encoding to the Fourier features. sine_only (`bool`, *optional*, defaults to `False`): Whether to use a single phase (sin) or two (sin/cos) for each frequency band. Returns: `torch.FloatTensor` of shape `(batch_size, sequence_length, n_channels)`: The Fourier position embeddings. If `concat_pos` is `True` and `sine_only` is `False`, output dimensions are ordered as: [dim_1, dim_2, ..., dim_d, sin(pi*f_1*dim_1), ..., sin(pi*f_K*dim_1), ..., sin(pi*f_1*dim_d), ..., sin(pi*f_K*dim_d), cos(pi*f_1*dim_1), ..., cos(pi*f_K*dim_1), ..., cos(pi*f_1*dim_d), ..., cos(pi*f_K*dim_d)], where dim_i is pos[:, i] and f_k is the kth frequency band.
Here is the function:
def generate_fourier_features(pos, num_bands, max_resolution=(224, 224), concat_pos=True, sine_only=False):
"""
Generate a Fourier frequency position encoding with linear spacing.
Args:
pos (`torch.LongTensor` of shape `(batch_size, sequence_length, dim)`):
The Tensor containing the position of n points in d dimensional space.
num_bands (`int`):
The number of frequency bands (K) to use.
max_resolution (`Tuple[int]`, *optional*, defaults to (224, 224)):
The maximum resolution (i.e. the number of pixels per dim). A tuple representing resolution for each dimension.
concat_pos (`bool`, *optional*, defaults to `True`):
Whether to concatenate the input position encoding to the Fourier features.
sine_only (`bool`, *optional*, defaults to `False`):
Whether to use a single phase (sin) or two (sin/cos) for each frequency band.
Returns:
`torch.FloatTensor` of shape `(batch_size, sequence_length, n_channels)`: The Fourier position embeddings. If
`concat_pos` is `True` and `sine_only` is `False`, output dimensions are ordered as: [dim_1, dim_2, ..., dim_d,
sin(pi*f_1*dim_1), ..., sin(pi*f_K*dim_1), ..., sin(pi*f_1*dim_d), ..., sin(pi*f_K*dim_d), cos(pi*f_1*dim_1),
..., cos(pi*f_K*dim_1), ..., cos(pi*f_1*dim_d), ..., cos(pi*f_K*dim_d)], where dim_i is pos[:, i] and f_k is the
kth frequency band.
"""
batch_size = pos.shape[0]
min_freq = 1.0
# Nyquist frequency at the target resolution:
freq_bands = torch.stack(
[torch.linspace(start=min_freq, end=res / 2, steps=num_bands) for res in max_resolution], dim=0
)
# Get frequency bands for each spatial dimension.
# Output is size [n, d * num_bands]
per_pos_features = pos[0, :, :][:, :, None] * freq_bands[None, :, :]
per_pos_features = torch.reshape(per_pos_features, [-1, np.prod(per_pos_features.shape[1:])])
if sine_only:
# Output is size [n, d * num_bands]
per_pos_features = torch.sin(np.pi * (per_pos_features))
else:
# Output is size [n, 2 * d * num_bands]
per_pos_features = torch.cat(
[torch.sin(np.pi * per_pos_features), torch.cos(np.pi * per_pos_features)], dim=-1
)
# Concatenate the raw input positions.
if concat_pos:
# Adds d bands to the encoding.
per_pos_features = torch.cat([pos, per_pos_features.expand(batch_size, -1, -1)], dim=-1)
return per_pos_features | Generate a Fourier frequency position encoding with linear spacing. Args: pos (`torch.LongTensor` of shape `(batch_size, sequence_length, dim)`): The Tensor containing the position of n points in d dimensional space. num_bands (`int`): The number of frequency bands (K) to use. max_resolution (`Tuple[int]`, *optional*, defaults to (224, 224)): The maximum resolution (i.e. the number of pixels per dim). A tuple representing resolution for each dimension. concat_pos (`bool`, *optional*, defaults to `True`): Whether to concatenate the input position encoding to the Fourier features. sine_only (`bool`, *optional*, defaults to `False`): Whether to use a single phase (sin) or two (sin/cos) for each frequency band. Returns: `torch.FloatTensor` of shape `(batch_size, sequence_length, n_channels)`: The Fourier position embeddings. If `concat_pos` is `True` and `sine_only` is `False`, output dimensions are ordered as: [dim_1, dim_2, ..., dim_d, sin(pi*f_1*dim_1), ..., sin(pi*f_K*dim_1), ..., sin(pi*f_1*dim_d), ..., sin(pi*f_K*dim_d), cos(pi*f_1*dim_1), ..., cos(pi*f_K*dim_1), ..., cos(pi*f_1*dim_d), ..., cos(pi*f_K*dim_d)], where dim_i is pos[:, i] and f_k is the kth frequency band. |
11,178 | import abc
import math
from dataclasses import dataclass
from functools import reduce
from operator import __add__
from typing import Any, Callable, Dict, List, Mapping, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutputWithCrossAttentions
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_perceiver import PerceiverConfig
def build_linear_positions(index_dims, output_range=(-1.0, 1.0)):
"""
Generate an array of position indices for an N-D input array.
Args:
index_dims (`List[int]`):
The shape of the index dimensions of the input array.
output_range (`Tuple[float]`, *optional*, defaults to `(-1.0, 1.0)`):
The min and max values taken by each input index dimension.
Returns:
`torch.FloatTensor` of shape `(index_dims[0], index_dims[1], .., index_dims[-1], N)`.
"""
def _linspace(n_xels_per_dim):
return torch.linspace(start=output_range[0], end=output_range[1], steps=n_xels_per_dim, dtype=torch.float32)
dim_ranges = [_linspace(n_xels_per_dim) for n_xels_per_dim in index_dims]
array_index_grid = torch.meshgrid(*dim_ranges)
return torch.stack(array_index_grid, dim=-1)
The provided code snippet includes necessary dependencies for implementing the `_check_or_build_spatial_positions` function. Write a Python function `def _check_or_build_spatial_positions(pos, index_dims, batch_size)` to solve the following problem:
Checks or builds spatial position features (x, y, ...). Args: pos (`torch.FloatTensor`): None, or an array of position features. If None, position features are built. Otherwise, their size is checked. index_dims (`List[int]`): An iterable giving the spatial/index size of the data to be featurized. batch_size (`int`): The batch size of the data to be featurized. Returns: `torch.FloatTensor` of shape `(batch_size, prod(index_dims))` an array of position features.
Here is the function:
def _check_or_build_spatial_positions(pos, index_dims, batch_size):
"""
Checks or builds spatial position features (x, y, ...).
Args:
pos (`torch.FloatTensor`):
None, or an array of position features. If None, position features are built. Otherwise, their size is checked.
index_dims (`List[int]`):
An iterable giving the spatial/index size of the data to be featurized.
batch_size (`int`):
The batch size of the data to be featurized.
Returns:
`torch.FloatTensor` of shape `(batch_size, prod(index_dims))` an array of position features.
"""
if pos is None:
pos = build_linear_positions(index_dims)
# equivalent to `torch.broadcast_to(pos[None], (batch_size,) + pos.shape)`
# but `torch.broadcast_to` cannot be converted to ONNX
pos = pos[None].expand((batch_size,) + pos.shape)
pos = torch.reshape(pos, [batch_size, np.prod(index_dims), -1])
else:
# Just a warning label: you probably don't want your spatial features to
# have a different spatial layout than your pos coordinate system.
# But feel free to override if you think it'll work!
if pos.shape[-1] != len(index_dims):
raise ValueError("Spatial features have the wrong number of dimensions.")
return pos | Checks or builds spatial position features (x, y, ...). Args: pos (`torch.FloatTensor`): None, or an array of position features. If None, position features are built. Otherwise, their size is checked. index_dims (`List[int]`): An iterable giving the spatial/index size of the data to be featurized. batch_size (`int`): The batch size of the data to be featurized. Returns: `torch.FloatTensor` of shape `(batch_size, prod(index_dims))` an array of position features. |
11,179 | import json
import os
from functools import lru_cache
from typing import Dict, List, Optional, Tuple, Union
import regex as re
from ...file_utils import PaddingStrategy, TensorType, add_end_docstrings
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
TextInputPair,
TruncationStrategy,
)
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `bytes_to_unicode` function. Write a Python function `def bytes_to_unicode()` to solve the following problem:
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings.
Here is the function:
def bytes_to_unicode():
"""
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control
characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large #
of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset
you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe
vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings.
"""
bs = (
list(range(ord("!"), ord("~") + 1)) + list(range(ord("¡"), ord("¬") + 1)) + list(range(ord("®"), ord("ÿ") + 1))
)
cs = bs[:]
n = 0
for b in range(2**8):
if b not in bs:
bs.append(b)
cs.append(2**8 + n)
n += 1
cs = [chr(n) for n in cs]
return dict(zip(bs, cs)) | Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings. |
11,180 | import json
import os
from functools import lru_cache
from typing import Dict, List, Optional, Tuple, Union
import regex as re
from ...file_utils import PaddingStrategy, TensorType, add_end_docstrings
from ...tokenization_utils import AddedToken, PreTrainedTokenizer
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
TextInputPair,
TruncationStrategy,
)
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `get_pairs` function. Write a Python function `def get_pairs(word)` to solve the following problem:
Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings).
Here is the function:
def get_pairs(word):
"""
Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length
strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs | Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings). |
11,181 | import math
import os
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from transformers.activations import ACT2FN
from transformers.file_utils import (
add_start_docstrings,
add_start_docstrings_to_model_forward,
replace_return_docstrings,
)
from transformers.modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from transformers.modeling_utils import (
PreTrainedModel,
apply_chunking_to_forward,
find_pruneable_heads_and_indices,
prune_linear_layer,
)
from transformers.utils import logging
from .configuration_markuplm import MarkupLMConfig
The provided code snippet includes necessary dependencies for implementing the `create_position_ids_from_input_ids` function. Write a Python function `def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0)` to solve the following problem:
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: torch.Tensor x: Returns: torch.Tensor
Here is the function:
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
x: torch.Tensor x:
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx | Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. Args: x: torch.Tensor x: Returns: torch.Tensor |
11,182 | import json
from functools import lru_cache
from typing import Dict, List, Optional, Tuple, Union
from tokenizers import pre_tokenizers, processors
from ...file_utils import PaddingStrategy, TensorType, add_end_docstrings
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
TextInputPair,
TruncationStrategy,
)
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
from .tokenization_markuplm import MARKUPLM_ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING, MarkupLMTokenizer
The provided code snippet includes necessary dependencies for implementing the `bytes_to_unicode` function. Write a Python function `def bytes_to_unicode()` to solve the following problem:
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings.
Here is the function:
def bytes_to_unicode():
"""
Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control
characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large #
of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset
you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe
vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings.
"""
bs = (
list(range(ord("!"), ord("~") + 1)) + list(range(ord("¡"), ord("¬") + 1)) + list(range(ord("®"), ord("ÿ") + 1))
)
cs = bs[:]
n = 0
for b in range(2**8):
if b not in bs:
bs.append(b)
cs.append(2**8 + n)
n += 1
cs = [chr(n) for n in cs]
return dict(zip(bs, cs)) | Returns list of utf-8 byte and a mapping to unicode strings. We specifically avoids mapping to whitespace/control characters the bpe code barfs on. The reversible bpe codes work on unicode strings. This means you need a large # of unicode characters in your vocab if you want to avoid UNKs. When you're at something like a 10B token dataset you end up needing around 5K for decent coverage. This is a significant percentage of your normal, say, 32K bpe vocab. To avoid that, we want lookup tables between utf-8 bytes and unicode strings. |
11,183 | import json
from functools import lru_cache
from typing import Dict, List, Optional, Tuple, Union
from tokenizers import pre_tokenizers, processors
from ...file_utils import PaddingStrategy, TensorType, add_end_docstrings
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
TextInputPair,
TruncationStrategy,
)
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
from .tokenization_markuplm import MARKUPLM_ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING, MarkupLMTokenizer
The provided code snippet includes necessary dependencies for implementing the `get_pairs` function. Write a Python function `def get_pairs(word)` to solve the following problem:
Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings).
Here is the function:
def get_pairs(word):
"""
Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length
strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs | Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings). |
11,184 | import copy
from typing import Callable, Optional, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen import partitioning as nn_partitioning
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_t5 import T5Config
The provided code snippet includes necessary dependencies for implementing the `shift_tokens_right` function. Write a Python function `def shift_tokens_right(input_ids: np.array, pad_token_id: int, decoder_start_token_id: int) -> np.ndarray` to solve the following problem:
Shift input ids one token to the right.
Here is the function:
def shift_tokens_right(input_ids: np.array, pad_token_id: int, decoder_start_token_id: int) -> np.ndarray:
"""
Shift input ids one token to the right.
"""
shifted_input_ids = np.zeros_like(input_ids)
shifted_input_ids[:, 1:] = input_ids[:, :-1]
shifted_input_ids[:, 0] = decoder_start_token_id
shifted_input_ids = np.where(shifted_input_ids == -100, pad_token_id, shifted_input_ids)
return shifted_input_ids | Shift input ids one token to the right. |
11,185 | import argparse
from transformers import T5Config, T5ForConditionalGeneration, load_tf_weights_in_t5
from transformers.utils import logging
def convert_tf_checkpoint_to_pytorch(tf_checkpoint_path, config_file, pytorch_dump_path):
# Initialise PyTorch model
config = T5Config.from_json_file(config_file)
print(f"Building PyTorch model from configuration: {config}")
model = T5ForConditionalGeneration(config)
# Load weights from tf checkpoint
load_tf_weights_in_t5(model, config, tf_checkpoint_path)
# Save pytorch-model
print(f"Save PyTorch model to {pytorch_dump_path}")
model.save_pretrained(pytorch_dump_path) | null |
11,186 | import copy
import math
import os
import warnings
from typing import Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from torch.utils.checkpoint import checkpoint
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import ALL_LAYERNORM_LAYERS, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
DUMMY_INPUTS,
DUMMY_MASK,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_torch_fx_proxy,
logging,
replace_return_docstrings,
)
from ...utils.model_parallel_utils import assert_device_map, get_device_map
from .configuration_t5 import T5Config
logger = logging.get_logger(__name__)
The provided code snippet includes necessary dependencies for implementing the `load_tf_weights_in_t5` function. Write a Python function `def load_tf_weights_in_t5(model, config, tf_checkpoint_path)` to solve the following problem:
Load tf checkpoints in a pytorch model.
Here is the function:
def load_tf_weights_in_t5(model, config, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
tf_weights = {}
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
tf_weights[name] = array
for txt_name in names:
name = txt_name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if any(
n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
tf_weights.pop(txt_name, None)
continue
if "_slot_" in name[-1]:
logger.info(f"Skipping {'/'.join(name)}")
tf_weights.pop(txt_name, None)
continue
pointer = model
array = tf_weights[txt_name]
for m_name in name:
if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] in ["kernel", "scale", "embedding"]:
pointer = getattr(pointer, "weight")
elif scope_names[0] == "self_attention":
pointer = getattr(pointer, "layer")
pointer = pointer[0]
elif scope_names[0] == "enc_dec_attention":
pointer = getattr(pointer, "layer")
pointer = pointer[1]
elif scope_names[0] == "dense_relu_dense":
pointer = getattr(pointer, "layer")
pointer = pointer[2]
elif scope_names[0] == "rms_norm":
if hasattr(pointer, "layer_norm"):
pointer = getattr(pointer, "layer_norm")
elif hasattr(pointer, "final_layer_norm"):
pointer = getattr(pointer, "final_layer_norm")
elif scope_names[0] == "scale":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "squad":
pointer = getattr(pointer, "classifier")
elif scope_names[0] == "decoder" and name[1] == "logits":
continue
elif scope_names[0] == "logits":
pointer = getattr(pointer, "lm_head")
elif scope_names[0] == "wi" and len(scope_names) > 1 and scope_names[1].isdigit():
pointer = getattr(pointer, f"wi_{scope_names[1]}")
continue
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if scope_names[0] not in ["kernel", "scale", "embedding"]:
pointer = getattr(pointer, "weight")
if scope_names[0] != "embedding":
logger.info(f"Transposing numpy weight of shape {array.shape} for {name}")
array = np.transpose(array)
try:
assert (
pointer.shape == array.shape
), f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched"
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array.astype(np.float32))
tf_weights.pop(txt_name, None)
logger.info(f"Weights not copied to PyTorch model: {', '.join(tf_weights.keys())}.")
return model | Load tf checkpoints in a pytorch model. |
11,187 | import argparse
from t5x import checkpoints
from transformers import FlaxT5ForConditionalGeneration, T5Config
def convert_t5x_checkpoint_to_flax(t5x_checkpoint_path, config_name, flax_dump_folder_path):
config = T5Config.from_pretrained(config_name)
flax_model = FlaxT5ForConditionalGeneration(config=config)
t5x_model = checkpoints.load_t5x_checkpoint(t5x_checkpoint_path)
split_mlp_wi = "wi_0" in t5x_model["target"]["encoder"]["layers_0"]["mlp"]
# Encoder
for layer_index in range(config.num_layers):
layer_name = f"layers_{str(layer_index)}"
# Self-Attention
t5x_attention_key = t5x_model["target"]["encoder"][layer_name]["attention"]["key"]["kernel"]
t5x_attention_out = t5x_model["target"]["encoder"][layer_name]["attention"]["out"]["kernel"]
t5x_attention_query = t5x_model["target"]["encoder"][layer_name]["attention"]["query"]["kernel"]
t5x_attention_value = t5x_model["target"]["encoder"][layer_name]["attention"]["value"]["kernel"]
# Layer Normalization
t5x_attention_layer_norm = t5x_model["target"]["encoder"][layer_name]["pre_attention_layer_norm"]["scale"]
if split_mlp_wi:
t5x_mlp_wi_0 = t5x_model["target"]["encoder"][layer_name]["mlp"]["wi_0"]["kernel"]
t5x_mlp_wi_1 = t5x_model["target"]["encoder"][layer_name]["mlp"]["wi_1"]["kernel"]
else:
t5x_mlp_wi = t5x_model["target"]["encoder"][layer_name]["mlp"]["wi"]["kernel"]
t5x_mlp_wo = t5x_model["target"]["encoder"][layer_name]["mlp"]["wo"]["kernel"]
# Layer Normalization
t5x_mlp_layer_norm = t5x_model["target"]["encoder"][layer_name]["pre_mlp_layer_norm"]["scale"]
# Assigning
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["0"]["SelfAttention"]["k"][
"kernel"
] = t5x_attention_key
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["0"]["SelfAttention"]["o"][
"kernel"
] = t5x_attention_out
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["0"]["SelfAttention"]["q"][
"kernel"
] = t5x_attention_query
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["0"]["SelfAttention"]["v"][
"kernel"
] = t5x_attention_value
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["0"]["layer_norm"][
"weight"
] = t5x_attention_layer_norm
if split_mlp_wi:
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["1"]["DenseReluDense"]["wi_0"][
"kernel"
] = t5x_mlp_wi_0
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["1"]["DenseReluDense"]["wi_1"][
"kernel"
] = t5x_mlp_wi_1
else:
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["1"]["DenseReluDense"]["wi"][
"kernel"
] = t5x_mlp_wi
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["1"]["DenseReluDense"]["wo"][
"kernel"
] = t5x_mlp_wo
flax_model.params["encoder"]["block"][str(layer_index)]["layer"]["1"]["layer_norm"][
"weight"
] = t5x_mlp_layer_norm
# Only for layer 0:
t5x_encoder_rel_embedding = t5x_model["target"]["encoder"]["relpos_bias"]["rel_embedding"].T
flax_model.params["encoder"]["block"]["0"]["layer"]["0"]["SelfAttention"]["relative_attention_bias"][
"embedding"
] = t5x_encoder_rel_embedding
# Assigning
t5x_encoder_norm = t5x_model["target"]["encoder"]["encoder_norm"]["scale"]
flax_model.params["encoder"]["final_layer_norm"]["weight"] = t5x_encoder_norm
# Decoder
for layer_index in range(config.num_decoder_layers):
layer_name = f"layers_{str(layer_index)}"
# Self-Attention
t5x_attention_key = t5x_model["target"]["decoder"][layer_name]["self_attention"]["key"]["kernel"]
t5x_attention_out = t5x_model["target"]["decoder"][layer_name]["self_attention"]["out"]["kernel"]
t5x_attention_query = t5x_model["target"]["decoder"][layer_name]["self_attention"]["query"]["kernel"]
t5x_attention_value = t5x_model["target"]["decoder"][layer_name]["self_attention"]["value"]["kernel"]
# Layer Normalization
t5x_pre_attention_layer_norm = t5x_model["target"]["decoder"][layer_name]["pre_self_attention_layer_norm"][
"scale"
]
# Encoder-Decoder-Attention
t5x_enc_dec_attention_key = t5x_model["target"]["decoder"][layer_name]["encoder_decoder_attention"]["key"][
"kernel"
]
t5x_enc_dec_attention_out = t5x_model["target"]["decoder"][layer_name]["encoder_decoder_attention"]["out"][
"kernel"
]
t5x_enc_dec_attention_query = t5x_model["target"]["decoder"][layer_name]["encoder_decoder_attention"]["query"][
"kernel"
]
t5x_enc_dec_attention_value = t5x_model["target"]["decoder"][layer_name]["encoder_decoder_attention"]["value"][
"kernel"
]
# Layer Normalization
t5x_cross_layer_norm = t5x_model["target"]["decoder"][layer_name]["pre_cross_attention_layer_norm"]["scale"]
# MLP
if split_mlp_wi:
t5x_mlp_wi_0 = t5x_model["target"]["decoder"][layer_name]["mlp"]["wi_0"]["kernel"]
t5x_mlp_wi_1 = t5x_model["target"]["decoder"][layer_name]["mlp"]["wi_1"]["kernel"]
else:
t5x_mlp_wi = t5x_model["target"]["decoder"][layer_name]["mlp"]["wi"]["kernel"]
t5x_mlp_wo = t5x_model["target"]["decoder"][layer_name]["mlp"]["wo"]["kernel"]
# Layer Normalization
tx5_mlp_layer_norm = t5x_model["target"]["decoder"][layer_name]["pre_mlp_layer_norm"]["scale"]
# Assigning
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["0"]["SelfAttention"]["k"][
"kernel"
] = t5x_attention_key
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["0"]["SelfAttention"]["o"][
"kernel"
] = t5x_attention_out
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["0"]["SelfAttention"]["q"][
"kernel"
] = t5x_attention_query
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["0"]["SelfAttention"]["v"][
"kernel"
] = t5x_attention_value
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["0"]["layer_norm"][
"weight"
] = t5x_pre_attention_layer_norm
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["1"]["EncDecAttention"]["k"][
"kernel"
] = t5x_enc_dec_attention_key
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["1"]["EncDecAttention"]["o"][
"kernel"
] = t5x_enc_dec_attention_out
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["1"]["EncDecAttention"]["q"][
"kernel"
] = t5x_enc_dec_attention_query
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["1"]["EncDecAttention"]["v"][
"kernel"
] = t5x_enc_dec_attention_value
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["1"]["layer_norm"][
"weight"
] = t5x_cross_layer_norm
if split_mlp_wi:
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["2"]["DenseReluDense"]["wi_0"][
"kernel"
] = t5x_mlp_wi_0
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["2"]["DenseReluDense"]["wi_1"][
"kernel"
] = t5x_mlp_wi_1
else:
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["2"]["DenseReluDense"]["wi"][
"kernel"
] = t5x_mlp_wi
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["2"]["DenseReluDense"]["wo"][
"kernel"
] = t5x_mlp_wo
flax_model.params["decoder"]["block"][str(layer_index)]["layer"]["2"]["layer_norm"][
"weight"
] = tx5_mlp_layer_norm
# Decoder Normalization
tx5_decoder_norm = t5x_model["target"]["decoder"]["decoder_norm"]["scale"]
flax_model.params["decoder"]["final_layer_norm"]["weight"] = tx5_decoder_norm
# Only for layer 0:
t5x_decoder_rel_embedding = t5x_model["target"]["decoder"]["relpos_bias"]["rel_embedding"].T
flax_model.params["decoder"]["block"]["0"]["layer"]["0"]["SelfAttention"]["relative_attention_bias"][
"embedding"
] = t5x_decoder_rel_embedding
# Token Embeddings
tx5_token_embeddings = t5x_model["target"]["token_embedder"]["embedding"]
flax_model.params["shared"]["embedding"] = tx5_token_embeddings
# LM Head (only in v1.1 checkpoints)
if "logits_dense" in t5x_model["target"]["decoder"]:
flax_model.params["lm_head"]["kernel"] = t5x_model["target"]["decoder"]["logits_dense"]["kernel"]
flax_model.save_pretrained(flax_dump_folder_path)
print("T5X Model was sucessfully converted!") | null |
11,189 | import math
import os
import warnings
from typing import Any, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.cuda.amp import autocast
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
SequenceClassifierOutputWithPast,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import Conv1D, find_pruneable_heads_and_indices, prune_conv1d_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_imagegpt import ImageGPTConfig
logger = logging.get_logger(__name__)
The provided code snippet includes necessary dependencies for implementing the `load_tf_weights_in_imagegpt` function. Write a Python function `def load_tf_weights_in_imagegpt(model, config, imagegpt_checkpoint_path)` to solve the following problem:
Load tf checkpoints in a pytorch model
Here is the function:
def load_tf_weights_in_imagegpt(model, config, imagegpt_checkpoint_path):
"""
Load tf checkpoints in a pytorch model
"""
try:
import re
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(imagegpt_checkpoint_path)
logger.info("Converting TensorFlow checkpoint from {}".format(tf_path))
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info("Loading TF weight {} with shape {}".format(name, shape))
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array.squeeze())
for name, array in zip(names, arrays):
name = name[6:] # skip "model/"
name = name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if any(
n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
for n in name
) or name[-1] in ["_step"]:
logger.info("Skipping {}".format("/".join(name)))
continue
pointer = model
if name[-1] not in ["wtet"]:
pointer = getattr(pointer, "transformer")
for m_name in name:
if re.fullmatch(r"[A-Za-z]+\d+", m_name):
scope_names = re.split(r"(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "w" or scope_names[0] == "g":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "b":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "wpe" or scope_names[0] == "wte":
pointer = getattr(pointer, scope_names[0])
pointer = getattr(pointer, "weight")
elif scope_names[0] in ["q_proj", "k_proj", "v_proj"]:
pointer = getattr(pointer, "c_attn")
pointer = getattr(pointer, "weight")
elif len(name) == 3 and name[1] == "attn" and scope_names[0] == "c_proj":
pointer = getattr(pointer, scope_names[0])
pointer = getattr(pointer, "weight")
elif scope_names[0] == "wtet":
pointer = getattr(pointer, "lm_head")
pointer = getattr(pointer, "weight")
elif scope_names[0] == "sos":
pointer = getattr(pointer, "wte")
pointer = getattr(pointer, "weight")
else:
pointer = getattr(pointer, scope_names[0])
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if len(name) > 1 and name[1] == "attn" or name[-1] == "wtet" or name[-1] == "sos" or name[-1] == "wte":
pass # array is used to initialize only part of the pointer so sizes won't match
else:
try:
assert pointer.shape == array.shape
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info("Initialize PyTorch weight {}".format(name))
if name[-1] == "q_proj":
pointer.data[:, : config.n_embd] = torch.from_numpy(array.reshape(config.n_embd, config.n_embd)).T
elif name[-1] == "k_proj":
pointer.data[:, config.n_embd : 2 * config.n_embd] = torch.from_numpy(
array.reshape(config.n_embd, config.n_embd)
).T
elif name[-1] == "v_proj":
pointer.data[:, 2 * config.n_embd :] = torch.from_numpy(array.reshape(config.n_embd, config.n_embd)).T
elif len(name) == 3 and name[1] == "attn" and name[2] == "c_proj":
pointer.data = torch.from_numpy(array.reshape(config.n_embd, config.n_embd))
elif name[-1] == "wtet":
pointer.data = torch.from_numpy(array)
elif name[-1] == "wte":
pointer.data[: config.vocab_size - 1, :] = torch.from_numpy(array)
elif name[-1] == "sos":
pointer.data[-1] = torch.from_numpy(array)
else:
pointer.data = torch.from_numpy(array)
return model | Load tf checkpoints in a pytorch model |
11,190 | import argparse
import torch
from transformers import ImageGPTConfig, ImageGPTForCausalLM, load_tf_weights_in_imagegpt
from transformers.utils import CONFIG_NAME, WEIGHTS_NAME, logging
def convert_imagegpt_checkpoint_to_pytorch(imagegpt_checkpoint_path, model_size, pytorch_dump_folder_path):
# Construct configuration depending on size
MODELS = {"small": (512, 8, 24), "medium": (1024, 8, 36), "large": (1536, 16, 48)}
n_embd, n_head, n_layer = MODELS[model_size] # set model hyperparameters
config = ImageGPTConfig(n_embd=n_embd, n_layer=n_layer, n_head=n_head)
model = ImageGPTForCausalLM(config)
# Load weights from numpy
load_tf_weights_in_imagegpt(model, config, imagegpt_checkpoint_path)
# Save pytorch-model
pytorch_weights_dump_path = pytorch_dump_folder_path + "/" + WEIGHTS_NAME
pytorch_config_dump_path = pytorch_dump_folder_path + "/" + CONFIG_NAME
print(f"Save PyTorch model to {pytorch_weights_dump_path}")
torch.save(model.state_dict(), pytorch_weights_dump_path)
print(f"Save configuration file to {pytorch_config_dump_path}")
with open(pytorch_config_dump_path, "w", encoding="utf-8") as f:
f.write(config.to_json_string()) | null |
11,191 | from typing import List, Optional, Union
import numpy as np
from PIL import Image
from transformers.image_utils import PILImageResampling
from ...feature_extraction_utils import BatchFeature, FeatureExtractionMixin
from ...image_utils import ImageFeatureExtractionMixin, is_torch_tensor
from ...utils import TensorType, logging
def squared_euclidean_distance(a, b):
b = b.T
a2 = np.sum(np.square(a), axis=1)
b2 = np.sum(np.square(b), axis=0)
ab = np.matmul(a, b)
d = a2[:, None] - 2 * ab + b2[None, :]
return d
def color_quantize(x, clusters):
x = x.reshape(-1, 3)
d = squared_euclidean_distance(x, clusters)
return np.argmin(d, axis=1) | null |
11,192 | import warnings
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...modeling_tf_outputs import TFBaseModelOutputWithPast, TFCausalLMOutputWithPast, TFSequenceClassifierOutput
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFSharedEmbeddings,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_ctrl import CTRLConfig
def angle_defn(pos, i, d_model_size):
def positional_encoding(position, d_model_size):
# create the sinusoidal pattern for the positional encoding
angle_rads = angle_defn(np.arange(position)[:, np.newaxis], np.arange(d_model_size)[np.newaxis, :], d_model_size)
sines = np.sin(angle_rads[:, 0::2])
cosines = np.cos(angle_rads[:, 1::2])
pos_encoding = tf.convert_to_tensor(np.concatenate([sines, cosines], axis=-1))
return pos_encoding | null |
11,193 | import warnings
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...modeling_tf_outputs import TFBaseModelOutputWithPast, TFCausalLMOutputWithPast, TFSequenceClassifierOutput
from ...modeling_tf_utils import (
TFCausalLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
TFSharedEmbeddings,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_ctrl import CTRLConfig
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
def stable_softmax(logits: tf.Tensor, axis: Optional[int] = None, name: Optional[str] = None) -> tf.Tensor:
"""
Stable wrapper that returns the same output as `tf.nn.softmax`, but that works reliably with XLA on CPU. It is
meant as a workaround for the [following issue](https://github.com/tensorflow/tensorflow/issues/55682), and will be
removed after it gets fixed. The arguments and outputs are the same as `tf.nn.softmax`, and relies on the fact that
`softmax(x) = softmax(x + c)` (see https://ogunlao.github.io/2020/04/26/you_dont_really_know_softmax.html).
Args:
logits (`tf.Tensor`):
Must be one of the following types: half, float32, float64.
axis (`int`, *optional*):
The dimension softmax would be performed on. The default is -1 which indicates the last dimension.
name (`str`, *optional*):
A name for the operation.
Returns:
`tf.Tensor`:
A Tensor. Has the same type and shape as logits.
"""
# TODO: When the issue linked above gets sorted, add a check on TF version here and use the original function if
# it has the fix. After we drop the support for unfixed versions, remove this function.
return tf.nn.softmax(logits=logits + 1e-9, axis=axis, name=name)
def scaled_dot_product_attention(q, k, v, mask, attention_mask=None, head_mask=None):
# calculate attention
matmul_qk = tf.matmul(q, k, transpose_b=True)
dk = tf.cast(shape_list(k)[-1], dtype=matmul_qk.dtype)
scaled_attention_logits = matmul_qk / tf.math.sqrt(dk)
if mask is not None:
scaled_attention_logits += tf.cast(mask * -1e4, dtype=scaled_attention_logits.dtype)
if attention_mask is not None:
# Apply the attention mask
attention_mask = tf.cast(attention_mask, dtype=scaled_attention_logits.dtype)
scaled_attention_logits = scaled_attention_logits + attention_mask
attention_weights = stable_softmax(scaled_attention_logits, axis=-1)
# Mask heads if we want to
if head_mask is not None:
attention_weights = attention_weights * head_mask
output = tf.matmul(attention_weights, v)
return output, attention_weights | null |
11,194 | from typing import Optional, Tuple, Union
import numpy as np
import torch
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...modeling_outputs import BaseModelOutputWithPast, CausalLMOutputWithPast, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import Conv1D, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_ctrl import CTRLConfig
def angle_defn(pos, i, d_model_size):
angle_rates = 1 / torch.pow(10000, (2 * (i // 2)) / d_model_size)
return pos * angle_rates
def positional_encoding(position, d_model_size, dtype):
# create the sinusoidal pattern for the positional encoding
angle_rads = angle_defn(
torch.arange(position, dtype=dtype).unsqueeze(1),
torch.arange(d_model_size, dtype=dtype).unsqueeze(0),
d_model_size,
)
sines = torch.sin(angle_rads[:, 0::2])
cosines = torch.cos(angle_rads[:, 1::2])
pos_encoding = torch.cat([sines, cosines], dim=-1)
return pos_encoding | null |
11,195 | from typing import Optional, Tuple, Union
import numpy as np
import torch
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...modeling_outputs import BaseModelOutputWithPast, CausalLMOutputWithPast, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import Conv1D, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_ctrl import CTRLConfig
def scaled_dot_product_attention(q, k, v, mask, attention_mask=None, head_mask=None):
# calculate attention
matmul_qk = torch.matmul(q, k.permute(0, 1, 3, 2))
dk = k.shape[-1]
scaled_attention_logits = matmul_qk / np.sqrt(dk)
if mask is not None:
nd, ns = scaled_attention_logits.size(-2), scaled_attention_logits.size(-1)
scaled_attention_logits += mask[ns - nd : ns, :ns] * -1e4
if attention_mask is not None:
# Apply the attention mask
scaled_attention_logits = scaled_attention_logits + attention_mask
attention_weights = torch.softmax(scaled_attention_logits, dim=-1)
# Mask heads if we want to
if head_mask is not None:
attention_weights = attention_weights * head_mask
output = torch.matmul(attention_weights, v)
return output, attention_weights | null |
11,196 | from typing import Optional, Tuple, Union
import numpy as np
import torch
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...modeling_outputs import BaseModelOutputWithPast, CausalLMOutputWithPast, SequenceClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import Conv1D, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_ctrl import CTRLConfig
def point_wise_feed_forward_network(d_model_size, dff):
return nn.Sequential(nn.Linear(d_model_size, dff), nn.ReLU(), nn.Linear(dff, d_model_size)) | null |
11,197 | import json
import os
from typing import Optional, Tuple
import regex as re
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `get_pairs` function. Write a Python function `def get_pairs(word)` to solve the following problem:
Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings).
Here is the function:
def get_pairs(word):
"""
Return set of symbol pairs in a word.
Word is represented as tuple of symbols (symbols being variable-length strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
pairs = set(pairs)
return pairs | Return set of symbol pairs in a word. Word is represented as tuple of symbols (symbols being variable-length strings). |
11,198 | import argparse
import json
import numpy as np
import torch
import gdown
from huggingface_hub import hf_hub_download
from transformers import (
VideoMAEConfig,
VideoMAEFeatureExtractor,
VideoMAEForPreTraining,
VideoMAEForVideoClassification,
)
def get_videomae_config(model_name):
def convert_state_dict(orig_state_dict, config):
def prepare_video():
def convert_videomae_checkpoint(checkpoint_url, pytorch_dump_folder_path, model_name, push_to_hub):
config = get_videomae_config(model_name)
if "finetuned" in model_name:
model = VideoMAEForVideoClassification(config)
else:
model = VideoMAEForPreTraining(config)
# download original checkpoint, hosted on Google Drive
output = "pytorch_model.bin"
gdown.cached_download(checkpoint_url, output, quiet=False)
files = torch.load(output, map_location="cpu")
if "model" in files:
state_dict = files["model"]
else:
state_dict = files["module"]
new_state_dict = convert_state_dict(state_dict, config)
model.load_state_dict(new_state_dict)
model.eval()
# verify model on basic input
feature_extractor = VideoMAEFeatureExtractor(image_mean=[0.5, 0.5, 0.5], image_std=[0.5, 0.5, 0.5])
video = prepare_video()
inputs = feature_extractor(video, return_tensors="pt")
if "finetuned" not in model_name:
local_path = hf_hub_download(repo_id="hf-internal-testing/bool-masked-pos", filename="bool_masked_pos.pt")
inputs["bool_masked_pos"] = torch.load(local_path)
outputs = model(**inputs)
logits = outputs.logits
model_names = [
# Kinetics-400 checkpoints (short = pretrained only for 800 epochs instead of 1600)
"videomae-base-short",
"videomae-base-short-finetuned-kinetics",
"videomae-base",
"videomae-base-finetuned-kinetics",
"videomae-large",
"videomae-large-finetuned-kinetics",
# Something-Something-v2 checkpoints (short = pretrained only for 800 epochs instead of 2400)
"videomae-base-short-ssv2",
"videomae-base-short-finetuned-ssv2",
"videomae-base-ssv2",
"videomae-base-finetuned-ssv2",
]
# NOTE: logits were tested with image_mean and image_std equal to [0.5, 0.5, 0.5] and [0.5, 0.5, 0.5]
if model_name == "videomae-base":
expected_shape = torch.Size([1, 1408, 1536])
expected_slice = torch.tensor([[0.7739, 0.7968, 0.7089], [0.6701, 0.7487, 0.6209], [0.4287, 0.5158, 0.4773]])
elif model_name == "videomae-base-short":
expected_shape = torch.Size([1, 1408, 1536])
expected_slice = torch.tensor([[0.7994, 0.9612, 0.8508], [0.7401, 0.8958, 0.8302], [0.5862, 0.7468, 0.7325]])
# we verified the loss both for normalized and unnormalized targets for this one
expected_loss = torch.tensor([0.5142]) if config.norm_pix_loss else torch.tensor([0.6469])
elif model_name == "videomae-large":
expected_shape = torch.Size([1, 1408, 1536])
expected_slice = torch.tensor([[0.7149, 0.7997, 0.6966], [0.6768, 0.7869, 0.6948], [0.5139, 0.6221, 0.5605]])
elif model_name == "videomae-large-finetuned-kinetics":
expected_shape = torch.Size([1, 400])
expected_slice = torch.tensor([0.0771, 0.0011, -0.3625])
elif model_name == "videomae-base-short-finetuned-kinetics":
expected_shape = torch.Size([1, 400])
expected_slice = torch.tensor([0.6588, 0.0990, -0.2493])
elif model_name == "videomae-base-finetuned-kinetics":
expected_shape = torch.Size([1, 400])
expected_slice = torch.tensor([0.3669, -0.0688, -0.2421])
elif model_name == "videomae-base-short-ssv2":
expected_shape = torch.Size([1, 1408, 1536])
expected_slice = torch.tensor([[0.4712, 0.5296, 0.5786], [0.2278, 0.2729, 0.4026], [0.0352, 0.0730, 0.2506]])
elif model_name == "videomae-base-short-finetuned-ssv2":
expected_shape = torch.Size([1, 174])
expected_slice = torch.tensor([-0.0537, -0.1539, -0.3266])
elif model_name == "videomae-base-ssv2":
expected_shape = torch.Size([1, 1408, 1536])
expected_slice = torch.tensor([[0.8131, 0.8727, 0.8546], [0.7366, 0.9377, 0.8870], [0.5935, 0.8874, 0.8564]])
elif model_name == "videomae-base-finetuned-ssv2":
expected_shape = torch.Size([1, 174])
expected_slice = torch.tensor([0.1961, -0.8337, -0.6389])
else:
raise ValueError(f"Model name not supported. Should be one of {model_names}")
# verify logits
assert logits.shape == expected_shape
if "finetuned" in model_name:
assert torch.allclose(logits[0, :3], expected_slice, atol=1e-4)
else:
print("Logits:", logits[0, :3, :3])
assert torch.allclose(logits[0, :3, :3], expected_slice, atol=1e-4)
print("Logits ok!")
# verify loss, if applicable
if model_name == "videomae-base-short":
loss = outputs.loss
assert torch.allclose(loss, expected_loss, atol=1e-4)
print("Loss ok!")
if pytorch_dump_folder_path is not None:
print(f"Saving model and feature extractor to {pytorch_dump_folder_path}")
feature_extractor.save_pretrained(pytorch_dump_folder_path)
model.save_pretrained(pytorch_dump_folder_path)
if push_to_hub:
print("Pushing to the hub...")
model.push_to_hub(model_name, organization="nielsr") | null |
11,199 | import collections.abc
import math
from copy import deepcopy
from dataclasses import dataclass
from typing import Optional, Set, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, ImageClassifierOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from ...utils.constants import IMAGENET_DEFAULT_MEAN, IMAGENET_DEFAULT_STD
from .configuration_videomae import VideoMAEConfig
The provided code snippet includes necessary dependencies for implementing the `get_sinusoid_encoding_table` function. Write a Python function `def get_sinusoid_encoding_table(n_position, d_hid)` to solve the following problem:
Sinusoid position encoding table
Here is the function:
def get_sinusoid_encoding_table(n_position, d_hid):
"""Sinusoid position encoding table"""
# TODO: make it with torch instead of numpy
def get_position_angle_vec(position):
return [position / np.power(10000, 2 * (hid_j // 2) / d_hid) for hid_j in range(d_hid)]
sinusoid_table = np.array([get_position_angle_vec(pos_i) for pos_i in range(n_position)])
sinusoid_table[:, 0::2] = np.sin(sinusoid_table[:, 0::2]) # dim 2i
sinusoid_table[:, 1::2] = np.cos(sinusoid_table[:, 1::2]) # dim 2i+1
return torch.FloatTensor(sinusoid_table).unsqueeze(0) | Sinusoid position encoding table |
11,202 | from typing import Callable, List, Optional, Tuple
import numpy as np
import flax
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPooling,
FlaxMaskedLMOutput,
FlaxSequenceClassifierOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward
from .configuration_beit import BeitConfig
The provided code snippet includes necessary dependencies for implementing the `relative_position_index_init` function. Write a Python function `def relative_position_index_init(window_size: Tuple[int, int]) -> jnp.ndarray` to solve the following problem:
get pair-wise relative position index for each token inside the window
Here is the function:
def relative_position_index_init(window_size: Tuple[int, int]) -> jnp.ndarray:
"""
get pair-wise relative position index for each token inside the window
"""
num_relative_distance = (2 * window_size[0] - 1) * (2 * window_size[1] - 1) + 3
coords_h = np.arange(window_size[0])
coords_w = np.arange(window_size[1])
coords = np.stack(np.meshgrid(coords_h, coords_w, indexing="ij")) # 2, Wh, Ww
coords_flatten = np.reshape(coords, (2, -1))
relative_coords = coords_flatten[:, :, None] - coords_flatten[:, None, :] # 2, Wh*Ww, Wh*Ww
relative_coords = np.transpose(relative_coords, (1, 2, 0)) # Wh*Ww, Wh*Ww, 2
relative_coords[:, :, 0] += window_size[0] - 1 # shift to start from 0
relative_coords[:, :, 1] += window_size[1] - 1
relative_coords[:, :, 0] *= 2 * window_size[1] - 1
relative_position_index = np.zeros(shape=(window_size[0] * window_size[1] + 1,) * 2, dtype=relative_coords.dtype)
relative_position_index[1:, 1:] = relative_coords.sum(-1) # Wh*Ww, Wh*Ww
relative_position_index[0, 0:] = num_relative_distance - 3
relative_position_index[0:, 0] = num_relative_distance - 2
relative_position_index[0, 0] = num_relative_distance - 1
return jnp.array(relative_position_index) | get pair-wise relative position index for each token inside the window |
11,203 | from typing import Callable, List, Optional, Tuple
import numpy as np
import flax
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPooling,
FlaxMaskedLMOutput,
FlaxSequenceClassifierOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward
from .configuration_beit import BeitConfig
def ones_with_scale(key, shape, scale, dtype=jnp.float32):
return jnp.ones(shape, dtype) * scale | null |
11,204 | import collections.abc
import math
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPooling,
ImageClassifierOutput,
MaskedLMOutput,
SemanticSegmenterOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_beit import BeitConfig
The provided code snippet includes necessary dependencies for implementing the `drop_path` function. Write a Python function `def drop_path(input: torch.Tensor, drop_prob: float = 0.0, training: bool = False) -> torch.Tensor` to solve the following problem:
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks, however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper... See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the argument.
Here is the function:
def drop_path(input: torch.Tensor, drop_prob: float = 0.0, training: bool = False) -> torch.Tensor:
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output | Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks, however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper... See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the argument. |
11,205 | import argparse
import json
from pathlib import Path
import torch
from datasets import load_dataset
from PIL import Image
import requests
from huggingface_hub import hf_hub_download
from transformers import (
BeitConfig,
BeitFeatureExtractor,
BeitForImageClassification,
BeitForMaskedImageModeling,
BeitForSemanticSegmentation,
)
from transformers.image_utils import PILImageResampling
from transformers.utils import logging
def create_rename_keys(config, has_lm_head=False, is_semantic=False):
prefix = "backbone." if is_semantic else ""
rename_keys = []
for i in range(config.num_hidden_layers):
# encoder layers: output projection, 2 feedforward neural networks and 2 layernorms
rename_keys.append((f"{prefix}blocks.{i}.norm1.weight", f"beit.encoder.layer.{i}.layernorm_before.weight"))
rename_keys.append((f"{prefix}blocks.{i}.norm1.bias", f"beit.encoder.layer.{i}.layernorm_before.bias"))
rename_keys.append(
(f"{prefix}blocks.{i}.attn.proj.weight", f"beit.encoder.layer.{i}.attention.output.dense.weight")
)
rename_keys.append(
(f"{prefix}blocks.{i}.attn.proj.bias", f"beit.encoder.layer.{i}.attention.output.dense.bias")
)
rename_keys.append((f"{prefix}blocks.{i}.norm2.weight", f"beit.encoder.layer.{i}.layernorm_after.weight"))
rename_keys.append((f"{prefix}blocks.{i}.norm2.bias", f"beit.encoder.layer.{i}.layernorm_after.bias"))
rename_keys.append((f"{prefix}blocks.{i}.mlp.fc1.weight", f"beit.encoder.layer.{i}.intermediate.dense.weight"))
rename_keys.append((f"{prefix}blocks.{i}.mlp.fc1.bias", f"beit.encoder.layer.{i}.intermediate.dense.bias"))
rename_keys.append((f"{prefix}blocks.{i}.mlp.fc2.weight", f"beit.encoder.layer.{i}.output.dense.weight"))
rename_keys.append((f"{prefix}blocks.{i}.mlp.fc2.bias", f"beit.encoder.layer.{i}.output.dense.bias"))
# projection layer + position embeddings
rename_keys.extend(
[
(f"{prefix}cls_token", "beit.embeddings.cls_token"),
(f"{prefix}patch_embed.proj.weight", "beit.embeddings.patch_embeddings.projection.weight"),
(f"{prefix}patch_embed.proj.bias", "beit.embeddings.patch_embeddings.projection.bias"),
]
)
if has_lm_head:
# mask token + shared relative position bias + layernorm
rename_keys.extend(
[
("mask_token", "beit.embeddings.mask_token"),
(
"rel_pos_bias.relative_position_bias_table",
"beit.encoder.relative_position_bias.relative_position_bias_table",
),
(
"rel_pos_bias.relative_position_index",
"beit.encoder.relative_position_bias.relative_position_index",
),
("norm.weight", "layernorm.weight"),
("norm.bias", "layernorm.bias"),
]
)
elif is_semantic:
# semantic segmentation classification heads
rename_keys.extend(
[
("decode_head.conv_seg.weight", "decode_head.classifier.weight"),
("decode_head.conv_seg.bias", "decode_head.classifier.bias"),
("auxiliary_head.conv_seg.weight", "auxiliary_head.classifier.weight"),
("auxiliary_head.conv_seg.bias", "auxiliary_head.classifier.bias"),
]
)
else:
# layernorm + classification head
rename_keys.extend(
[
("fc_norm.weight", "beit.pooler.layernorm.weight"),
("fc_norm.bias", "beit.pooler.layernorm.bias"),
("head.weight", "classifier.weight"),
("head.bias", "classifier.bias"),
]
)
return rename_keys
def read_in_q_k_v(state_dict, config, has_lm_head=False, is_semantic=False):
for i in range(config.num_hidden_layers):
prefix = "backbone." if is_semantic else ""
# queries, keys and values
in_proj_weight = state_dict.pop(f"{prefix}blocks.{i}.attn.qkv.weight")
q_bias = state_dict.pop(f"{prefix}blocks.{i}.attn.q_bias")
v_bias = state_dict.pop(f"{prefix}blocks.{i}.attn.v_bias")
state_dict[f"beit.encoder.layer.{i}.attention.attention.query.weight"] = in_proj_weight[
: config.hidden_size, :
]
state_dict[f"beit.encoder.layer.{i}.attention.attention.query.bias"] = q_bias
state_dict[f"beit.encoder.layer.{i}.attention.attention.key.weight"] = in_proj_weight[
config.hidden_size : config.hidden_size * 2, :
]
state_dict[f"beit.encoder.layer.{i}.attention.attention.value.weight"] = in_proj_weight[
-config.hidden_size :, :
]
state_dict[f"beit.encoder.layer.{i}.attention.attention.value.bias"] = v_bias
# gamma_1 and gamma_2
# we call them lambda because otherwise they are renamed when using .from_pretrained
gamma_1 = state_dict.pop(f"{prefix}blocks.{i}.gamma_1")
gamma_2 = state_dict.pop(f"{prefix}blocks.{i}.gamma_2")
state_dict[f"beit.encoder.layer.{i}.lambda_1"] = gamma_1
state_dict[f"beit.encoder.layer.{i}.lambda_2"] = gamma_2
# relative_position bias table + index
if not has_lm_head:
# each layer has its own relative position bias
table = state_dict.pop(f"{prefix}blocks.{i}.attn.relative_position_bias_table")
index = state_dict.pop(f"{prefix}blocks.{i}.attn.relative_position_index")
state_dict[
f"beit.encoder.layer.{i}.attention.attention.relative_position_bias.relative_position_bias_table"
] = table
state_dict[
f"beit.encoder.layer.{i}.attention.attention.relative_position_bias.relative_position_index"
] = index
def rename_key(dct, old, new):
val = dct.pop(old)
dct[new] = val
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
im = Image.open(requests.get(url, stream=True).raw)
return im
The provided code snippet includes necessary dependencies for implementing the `convert_beit_checkpoint` function. Write a Python function `def convert_beit_checkpoint(checkpoint_url, pytorch_dump_folder_path)` to solve the following problem:
Copy/paste/tweak model's weights to our BEiT structure.
Here is the function:
def convert_beit_checkpoint(checkpoint_url, pytorch_dump_folder_path):
"""
Copy/paste/tweak model's weights to our BEiT structure.
"""
# define default BEiT configuration
config = BeitConfig()
has_lm_head = False
is_semantic = False
repo_id = "huggingface/label-files"
# set config parameters based on URL
if checkpoint_url[-9:-4] == "pt22k":
# masked image modeling
config.use_shared_relative_position_bias = True
config.use_mask_token = True
has_lm_head = True
elif checkpoint_url[-9:-4] == "ft22k":
# intermediate fine-tuning on ImageNet-22k
config.use_relative_position_bias = True
config.num_labels = 21841
filename = "imagenet-22k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
# this dataset contains 21843 labels but the model only has 21841
# we delete the classes as mentioned in https://github.com/google-research/big_transfer/issues/18
del id2label[9205]
del id2label[15027]
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
elif checkpoint_url[-8:-4] == "to1k":
# fine-tuning on ImageNet-1k
config.use_relative_position_bias = True
config.num_labels = 1000
filename = "imagenet-1k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
if "384" in checkpoint_url:
config.image_size = 384
if "512" in checkpoint_url:
config.image_size = 512
elif "ade20k" in checkpoint_url:
# fine-tuning
config.use_relative_position_bias = True
config.num_labels = 150
filename = "ade20k-id2label.json"
id2label = json.load(open(hf_hub_download(repo_id, filename, repo_type="dataset"), "r"))
id2label = {int(k): v for k, v in id2label.items()}
config.id2label = id2label
config.label2id = {v: k for k, v in id2label.items()}
config.image_size = 640
is_semantic = True
else:
raise ValueError("Checkpoint not supported, URL should either end with 'pt22k', 'ft22k', 'to1k' or 'ade20k'")
# size of the architecture
if "base" in checkpoint_url:
pass
elif "large" in checkpoint_url:
config.hidden_size = 1024
config.intermediate_size = 4096
config.num_hidden_layers = 24
config.num_attention_heads = 16
if "ade20k" in checkpoint_url:
config.image_size = 640
config.out_indices = [7, 11, 15, 23]
else:
raise ValueError("Should either find 'base' or 'large' in checkpoint URL")
# load state_dict of original model, remove and rename some keys
state_dict = torch.hub.load_state_dict_from_url(checkpoint_url, map_location="cpu", check_hash=True)
state_dict = state_dict["model"] if "ade20k" not in checkpoint_url else state_dict["state_dict"]
rename_keys = create_rename_keys(config, has_lm_head=has_lm_head, is_semantic=is_semantic)
for src, dest in rename_keys:
rename_key(state_dict, src, dest)
read_in_q_k_v(state_dict, config, has_lm_head=has_lm_head, is_semantic=is_semantic)
if is_semantic:
# add prefix to decoder keys
for key, val in state_dict.copy().items():
val = state_dict.pop(key)
if key.startswith("backbone.fpn"):
key = key.replace("backbone.fpn", "fpn")
state_dict[key] = val
# load HuggingFace model
if checkpoint_url[-9:-4] == "pt22k":
model = BeitForMaskedImageModeling(config)
elif "ade20k" in checkpoint_url:
model = BeitForSemanticSegmentation(config)
else:
model = BeitForImageClassification(config)
model.eval()
model.load_state_dict(state_dict)
# Check outputs on an image
if is_semantic:
feature_extractor = BeitFeatureExtractor(size=config.image_size, do_center_crop=False)
ds = load_dataset("hf-internal-testing/fixtures_ade20k", split="test")
image = Image.open(ds[0]["file"])
else:
feature_extractor = BeitFeatureExtractor(
size=config.image_size, resample=PILImageResampling.BILINEAR, do_center_crop=False
)
image = prepare_img()
encoding = feature_extractor(images=image, return_tensors="pt")
pixel_values = encoding["pixel_values"]
outputs = model(pixel_values)
logits = outputs.logits
# verify logits
expected_shape = torch.Size([1, 1000])
if checkpoint_url[:-4].endswith("beit_base_patch16_224_pt22k"):
expected_shape = torch.Size([1, 196, 8192])
elif checkpoint_url[:-4].endswith("beit_large_patch16_224_pt22k"):
expected_shape = torch.Size([1, 196, 8192])
elif checkpoint_url[:-4].endswith("beit_base_patch16_224_pt22k_ft22k"):
expected_shape = torch.Size([1, 21841])
expected_logits = torch.tensor([2.2288, 2.4671, 0.7395])
expected_class_idx = 2397
elif checkpoint_url[:-4].endswith("beit_large_patch16_224_pt22k_ft22k"):
expected_shape = torch.Size([1, 21841])
expected_logits = torch.tensor([1.6881, -0.2787, 0.5901])
expected_class_idx = 2396
elif checkpoint_url[:-4].endswith("beit_base_patch16_224_pt22k_ft1k"):
expected_logits = torch.tensor([0.1241, 0.0798, -0.6569])
expected_class_idx = 285
elif checkpoint_url[:-4].endswith("beit_base_patch16_224_pt22k_ft22kto1k"):
expected_logits = torch.tensor([-1.2385, -1.0987, -1.0108])
expected_class_idx = 281
elif checkpoint_url[:-4].endswith("beit_base_patch16_384_pt22k_ft22kto1k"):
expected_logits = torch.tensor([-1.5303, -0.9484, -0.3147])
expected_class_idx = 761
elif checkpoint_url[:-4].endswith("beit_large_patch16_224_pt22k_ft1k"):
expected_logits = torch.tensor([0.4610, -0.0928, 0.2086])
expected_class_idx = 761
elif checkpoint_url[:-4].endswith("beit_large_patch16_224_pt22k_ft22kto1k"):
expected_logits = torch.tensor([-0.4804, 0.6257, -0.1837])
expected_class_idx = 761
elif checkpoint_url[:-4].endswith("beit_large_patch16_384_pt22k_ft22kto1k"):
expected_logits = torch.tensor([[-0.5122, 0.5117, -0.2113]])
expected_class_idx = 761
elif checkpoint_url[:-4].endswith("beit_large_patch16_512_pt22k_ft22kto1k"):
expected_logits = torch.tensor([-0.3062, 0.7261, 0.4852])
expected_class_idx = 761
elif checkpoint_url[:-4].endswith("beit_base_patch16_640_pt22k_ft22ktoade20k"):
expected_shape = (1, 150, 160, 160)
expected_logits = torch.tensor(
[
[[-4.9225, -2.3954, -3.0522], [-2.8822, -1.0046, -1.7561], [-2.9549, -1.3228, -2.1347]],
[[-5.8168, -3.4129, -4.0778], [-3.8651, -2.2214, -3.0277], [-3.8356, -2.4643, -3.3535]],
[[-0.0078, 3.9952, 4.0754], [2.9856, 4.6944, 5.0035], [3.2413, 4.7813, 4.9969]],
]
)
elif checkpoint_url[:-4].endswith("beit_large_patch16_640_pt22k_ft22ktoade20k"):
expected_shape = (1, 150, 160, 160)
expected_logits = torch.tensor(
[
[[-4.3305, -2.3049, -3.0161], [-2.9591, -1.5305, -2.2251], [-3.4198, -1.8004, -2.9062]],
[[-5.8922, -3.7435, -4.3978], [-4.2063, -2.7872, -3.4755], [-4.2791, -3.1874, -4.1681]],
[[0.9895, 4.3467, 4.7663], [4.2476, 5.6830, 6.1518], [4.5550, 6.2495, 6.5154]],
]
)
else:
raise ValueError("Can't verify logits as model is not supported")
assert logits.shape == expected_shape, "Shape of logits not as expected"
if not has_lm_head:
if is_semantic:
assert torch.allclose(
logits[0, :3, :3, :3], expected_logits, atol=1e-3
), "First elements of logits not as expected"
else:
print("Predicted class idx:", logits.argmax(-1).item())
assert torch.allclose(
logits[0, :3], expected_logits, atol=1e-3
), "First elements of logits not as expected"
assert logits.argmax(-1).item() == expected_class_idx, "Predicted class index not as expected"
Path(pytorch_dump_folder_path).mkdir(exist_ok=True)
print(f"Saving model to {pytorch_dump_folder_path}")
model.save_pretrained(pytorch_dump_folder_path)
print(f"Saving feature extractor to {pytorch_dump_folder_path}")
feature_extractor.save_pretrained(pytorch_dump_folder_path) | Copy/paste/tweak model's weights to our BEiT structure. |
11,206 | import argparse
import torch
from transformers import BertConfig, BertForPreTraining, load_tf_weights_in_bert
from transformers.utils import logging
def convert_tf_checkpoint_to_pytorch(tf_checkpoint_path, bert_config_file, pytorch_dump_path):
# Initialise PyTorch model
config = BertConfig.from_json_file(bert_config_file)
print(f"Building PyTorch model from configuration: {config}")
model = BertForPreTraining(config)
# Load weights from tf checkpoint
load_tf_weights_in_bert(model, config, tf_checkpoint_path)
# Save pytorch-model
print(f"Save PyTorch model to {pytorch_dump_path}")
torch.save(model.state_dict(), pytorch_dump_path) | null |
11,207 | import argparse
import os
import numpy as np
import tensorflow as tf
import torch
from transformers import BertModel
The provided code snippet includes necessary dependencies for implementing the `convert_pytorch_checkpoint_to_tf` function. Write a Python function `def convert_pytorch_checkpoint_to_tf(model: BertModel, ckpt_dir: str, model_name: str)` to solve the following problem:
Args: model: BertModel Pytorch model instance to be converted ckpt_dir: Tensorflow model directory model_name: model name Currently supported HF models: - Y BertModel - N BertForMaskedLM - N BertForPreTraining - N BertForMultipleChoice - N BertForNextSentencePrediction - N BertForSequenceClassification - N BertForQuestionAnswering
Here is the function:
def convert_pytorch_checkpoint_to_tf(model: BertModel, ckpt_dir: str, model_name: str):
"""
Args:
model: BertModel Pytorch model instance to be converted
ckpt_dir: Tensorflow model directory
model_name: model name
Currently supported HF models:
- Y BertModel
- N BertForMaskedLM
- N BertForPreTraining
- N BertForMultipleChoice
- N BertForNextSentencePrediction
- N BertForSequenceClassification
- N BertForQuestionAnswering
"""
tensors_to_transpose = ("dense.weight", "attention.self.query", "attention.self.key", "attention.self.value")
var_map = (
("layer.", "layer_"),
("word_embeddings.weight", "word_embeddings"),
("position_embeddings.weight", "position_embeddings"),
("token_type_embeddings.weight", "token_type_embeddings"),
(".", "/"),
("LayerNorm/weight", "LayerNorm/gamma"),
("LayerNorm/bias", "LayerNorm/beta"),
("weight", "kernel"),
)
if not os.path.isdir(ckpt_dir):
os.makedirs(ckpt_dir)
state_dict = model.state_dict()
def to_tf_var_name(name: str):
for patt, repl in iter(var_map):
name = name.replace(patt, repl)
return f"bert/{name}"
def create_tf_var(tensor: np.ndarray, name: str, session: tf.Session):
tf_dtype = tf.dtypes.as_dtype(tensor.dtype)
tf_var = tf.get_variable(dtype=tf_dtype, shape=tensor.shape, name=name, initializer=tf.zeros_initializer())
session.run(tf.variables_initializer([tf_var]))
session.run(tf_var)
return tf_var
tf.reset_default_graph()
with tf.Session() as session:
for var_name in state_dict:
tf_name = to_tf_var_name(var_name)
torch_tensor = state_dict[var_name].numpy()
if any([x in var_name for x in tensors_to_transpose]):
torch_tensor = torch_tensor.T
tf_var = create_tf_var(tensor=torch_tensor, name=tf_name, session=session)
tf.keras.backend.set_value(tf_var, torch_tensor)
tf_weight = session.run(tf_var)
print(f"Successfully created {tf_name}: {np.allclose(tf_weight, torch_tensor)}")
saver = tf.train.Saver(tf.trainable_variables())
saver.save(session, os.path.join(ckpt_dir, model_name.replace("-", "_") + ".ckpt")) | Args: model: BertModel Pytorch model instance to be converted ckpt_dir: Tensorflow model directory model_name: model name Currently supported HF models: - Y BertModel - N BertForMaskedLM - N BertForPreTraining - N BertForMultipleChoice - N BertForNextSentencePrediction - N BertForSequenceClassification - N BertForQuestionAnswering |
11,208 | import math
import os
import warnings
from dataclasses import dataclass
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
NextSentencePredictorOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_bert import BertConfig
logger = logging.get_logger(__name__)
The provided code snippet includes necessary dependencies for implementing the `load_tf_weights_in_bert` function. Write a Python function `def load_tf_weights_in_bert(model, config, tf_checkpoint_path)` to solve the following problem:
Load tf checkpoints in a pytorch model.
Here is the function:
def load_tf_weights_in_bert(model, config, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array)
for name, array in zip(names, arrays):
name = name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if any(
n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
continue
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "kernel" or scope_names[0] == "gamma":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "output_weights":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "squad":
pointer = getattr(pointer, "classifier")
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if m_name[-11:] == "_embeddings":
pointer = getattr(pointer, "weight")
elif m_name == "kernel":
array = np.transpose(array)
try:
if pointer.shape != array.shape:
raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched")
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model | Load tf checkpoints in a pytorch model. |
11,209 | import argparse
import os
import re
import tensorflow as tf
import torch
from transformers import BertConfig, BertModel
from transformers.utils import logging
logger = logging.get_logger(__name__)
def load_tf2_weights_in_bert(model, tf_checkpoint_path, config):
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
layer_depth = []
for full_name, shape in init_vars:
# logger.info(f"Loading TF weight {name} with shape {shape}")
name = full_name.split("/")
if full_name == "_CHECKPOINTABLE_OBJECT_GRAPH" or name[0] in ["global_step", "save_counter"]:
logger.info(f"Skipping non-model layer {full_name}")
continue
if "optimizer" in full_name:
logger.info(f"Skipping optimization layer {full_name}")
continue
if name[0] == "model":
# ignore initial 'model'
name = name[1:]
# figure out how many levels deep the name is
depth = 0
for _name in name:
if _name.startswith("layer_with_weights"):
depth += 1
else:
break
layer_depth.append(depth)
# read data
array = tf.train.load_variable(tf_path, full_name)
names.append("/".join(name))
arrays.append(array)
logger.info(f"Read a total of {len(arrays):,} layers")
# Sanity check
if len(set(layer_depth)) != 1:
raise ValueError(f"Found layer names with different depths (layer depth {list(set(layer_depth))})")
layer_depth = list(set(layer_depth))[0]
if layer_depth != 1:
raise ValueError(
"The model contains more than just the embedding/encoder layers. This script does not handle MLM/NSP"
" heads."
)
# convert layers
logger.info("Converting weights...")
for full_name, array in zip(names, arrays):
name = full_name.split("/")
pointer = model
trace = []
for i, m_name in enumerate(name):
if m_name == ".ATTRIBUTES":
# variable names end with .ATTRIBUTES/VARIABLE_VALUE
break
if m_name.startswith("layer_with_weights"):
layer_num = int(m_name.split("-")[-1])
if layer_num <= 2:
# embedding layers
# layer_num 0: word_embeddings
# layer_num 1: position_embeddings
# layer_num 2: token_type_embeddings
continue
elif layer_num == 3:
# embedding LayerNorm
trace.extend(["embeddings", "LayerNorm"])
pointer = getattr(pointer, "embeddings")
pointer = getattr(pointer, "LayerNorm")
elif layer_num > 3 and layer_num < config.num_hidden_layers + 4:
# encoder layers
trace.extend(["encoder", "layer", str(layer_num - 4)])
pointer = getattr(pointer, "encoder")
pointer = getattr(pointer, "layer")
pointer = pointer[layer_num - 4]
elif layer_num == config.num_hidden_layers + 4:
# pooler layer
trace.extend(["pooler", "dense"])
pointer = getattr(pointer, "pooler")
pointer = getattr(pointer, "dense")
elif m_name == "embeddings":
trace.append("embeddings")
pointer = getattr(pointer, "embeddings")
if layer_num == 0:
trace.append("word_embeddings")
pointer = getattr(pointer, "word_embeddings")
elif layer_num == 1:
trace.append("position_embeddings")
pointer = getattr(pointer, "position_embeddings")
elif layer_num == 2:
trace.append("token_type_embeddings")
pointer = getattr(pointer, "token_type_embeddings")
else:
raise ValueError(f"Unknown embedding layer with name {full_name}")
trace.append("weight")
pointer = getattr(pointer, "weight")
elif m_name == "_attention_layer":
# self-attention layer
trace.extend(["attention", "self"])
pointer = getattr(pointer, "attention")
pointer = getattr(pointer, "self")
elif m_name == "_attention_layer_norm":
# output attention norm
trace.extend(["attention", "output", "LayerNorm"])
pointer = getattr(pointer, "attention")
pointer = getattr(pointer, "output")
pointer = getattr(pointer, "LayerNorm")
elif m_name == "_attention_output_dense":
# output attention dense
trace.extend(["attention", "output", "dense"])
pointer = getattr(pointer, "attention")
pointer = getattr(pointer, "output")
pointer = getattr(pointer, "dense")
elif m_name == "_output_dense":
# output dense
trace.extend(["output", "dense"])
pointer = getattr(pointer, "output")
pointer = getattr(pointer, "dense")
elif m_name == "_output_layer_norm":
# output dense
trace.extend(["output", "LayerNorm"])
pointer = getattr(pointer, "output")
pointer = getattr(pointer, "LayerNorm")
elif m_name == "_key_dense":
# attention key
trace.append("key")
pointer = getattr(pointer, "key")
elif m_name == "_query_dense":
# attention query
trace.append("query")
pointer = getattr(pointer, "query")
elif m_name == "_value_dense":
# attention value
trace.append("value")
pointer = getattr(pointer, "value")
elif m_name == "_intermediate_dense":
# attention intermediate dense
trace.extend(["intermediate", "dense"])
pointer = getattr(pointer, "intermediate")
pointer = getattr(pointer, "dense")
elif m_name == "_output_layer_norm":
# output layer norm
trace.append("output")
pointer = getattr(pointer, "output")
# weights & biases
elif m_name in ["bias", "beta"]:
trace.append("bias")
pointer = getattr(pointer, "bias")
elif m_name in ["kernel", "gamma"]:
trace.append("weight")
pointer = getattr(pointer, "weight")
else:
logger.warning(f"Ignored {m_name}")
# for certain layers reshape is necessary
trace = ".".join(trace)
if re.match(r"(\S+)\.attention\.self\.(key|value|query)\.(bias|weight)", trace) or re.match(
r"(\S+)\.attention\.output\.dense\.weight", trace
):
array = array.reshape(pointer.data.shape)
if "kernel" in full_name:
array = array.transpose()
if pointer.shape == array.shape:
pointer.data = torch.from_numpy(array)
else:
raise ValueError(
f"Shape mismatch in layer {full_name}: Model expects shape {pointer.shape} but layer contains shape:"
f" {array.shape}"
)
logger.info(f"Successfully set variable {full_name} to PyTorch layer {trace}")
return model
def convert_tf2_checkpoint_to_pytorch(tf_checkpoint_path, config_path, pytorch_dump_path):
# Instantiate model
logger.info(f"Loading model based on config from {config_path}...")
config = BertConfig.from_json_file(config_path)
model = BertModel(config)
# Load weights from checkpoint
logger.info(f"Loading weights from checkpoint {tf_checkpoint_path}...")
load_tf2_weights_in_bert(model, tf_checkpoint_path, config)
# Save pytorch-model
logger.info(f"Saving PyTorch model to {pytorch_dump_path}...")
torch.save(model.state_dict(), pytorch_dump_path) | null |
11,210 | import argparse
import tensorflow as tf
import torch
from transformers import BertConfig, BertForMaskedLM
from transformers.models.bert.modeling_bert import (
BertIntermediate,
BertLayer,
BertOutput,
BertPooler,
BertSelfAttention,
BertSelfOutput,
)
from transformers.utils import logging
def convert_checkpoint_to_pytorch(tf_checkpoint_path: str, config_path: str, pytorch_dump_path: str):
def get_masked_lm_array(name: str):
full_name = f"masked_lm/{name}/.ATTRIBUTES/VARIABLE_VALUE"
array = tf.train.load_variable(tf_checkpoint_path, full_name)
if "kernel" in name:
array = array.transpose()
return torch.from_numpy(array)
def get_encoder_array(name: str):
full_name = f"encoder/{name}/.ATTRIBUTES/VARIABLE_VALUE"
array = tf.train.load_variable(tf_checkpoint_path, full_name)
if "kernel" in name:
array = array.transpose()
return torch.from_numpy(array)
def get_encoder_layer_array(layer_index: int, name: str):
full_name = f"encoder/_transformer_layers/{layer_index}/{name}/.ATTRIBUTES/VARIABLE_VALUE"
array = tf.train.load_variable(tf_checkpoint_path, full_name)
if "kernel" in name:
array = array.transpose()
return torch.from_numpy(array)
def get_encoder_attention_layer_array(layer_index: int, name: str, orginal_shape):
full_name = f"encoder/_transformer_layers/{layer_index}/_attention_layer/{name}/.ATTRIBUTES/VARIABLE_VALUE"
array = tf.train.load_variable(tf_checkpoint_path, full_name)
array = array.reshape(orginal_shape)
if "kernel" in name:
array = array.transpose()
return torch.from_numpy(array)
print(f"Loading model based on config from {config_path}...")
config = BertConfig.from_json_file(config_path)
model = BertForMaskedLM(config)
# Layers
for layer_index in range(0, config.num_hidden_layers):
layer: BertLayer = model.bert.encoder.layer[layer_index]
# Self-attention
self_attn: BertSelfAttention = layer.attention.self
self_attn.query.weight.data = get_encoder_attention_layer_array(
layer_index, "_query_dense/kernel", self_attn.query.weight.data.shape
)
self_attn.query.bias.data = get_encoder_attention_layer_array(
layer_index, "_query_dense/bias", self_attn.query.bias.data.shape
)
self_attn.key.weight.data = get_encoder_attention_layer_array(
layer_index, "_key_dense/kernel", self_attn.key.weight.data.shape
)
self_attn.key.bias.data = get_encoder_attention_layer_array(
layer_index, "_key_dense/bias", self_attn.key.bias.data.shape
)
self_attn.value.weight.data = get_encoder_attention_layer_array(
layer_index, "_value_dense/kernel", self_attn.value.weight.data.shape
)
self_attn.value.bias.data = get_encoder_attention_layer_array(
layer_index, "_value_dense/bias", self_attn.value.bias.data.shape
)
# Self-attention Output
self_output: BertSelfOutput = layer.attention.output
self_output.dense.weight.data = get_encoder_attention_layer_array(
layer_index, "_output_dense/kernel", self_output.dense.weight.data.shape
)
self_output.dense.bias.data = get_encoder_attention_layer_array(
layer_index, "_output_dense/bias", self_output.dense.bias.data.shape
)
self_output.LayerNorm.weight.data = get_encoder_layer_array(layer_index, "_attention_layer_norm/gamma")
self_output.LayerNorm.bias.data = get_encoder_layer_array(layer_index, "_attention_layer_norm/beta")
# Intermediate
intermediate: BertIntermediate = layer.intermediate
intermediate.dense.weight.data = get_encoder_layer_array(layer_index, "_intermediate_dense/kernel")
intermediate.dense.bias.data = get_encoder_layer_array(layer_index, "_intermediate_dense/bias")
# Output
bert_output: BertOutput = layer.output
bert_output.dense.weight.data = get_encoder_layer_array(layer_index, "_output_dense/kernel")
bert_output.dense.bias.data = get_encoder_layer_array(layer_index, "_output_dense/bias")
bert_output.LayerNorm.weight.data = get_encoder_layer_array(layer_index, "_output_layer_norm/gamma")
bert_output.LayerNorm.bias.data = get_encoder_layer_array(layer_index, "_output_layer_norm/beta")
# Embeddings
model.bert.embeddings.position_embeddings.weight.data = get_encoder_array("_position_embedding_layer/embeddings")
model.bert.embeddings.token_type_embeddings.weight.data = get_encoder_array("_type_embedding_layer/embeddings")
model.bert.embeddings.LayerNorm.weight.data = get_encoder_array("_embedding_norm_layer/gamma")
model.bert.embeddings.LayerNorm.bias.data = get_encoder_array("_embedding_norm_layer/beta")
# LM Head
lm_head = model.cls.predictions.transform
lm_head.dense.weight.data = get_masked_lm_array("dense/kernel")
lm_head.dense.bias.data = get_masked_lm_array("dense/bias")
lm_head.LayerNorm.weight.data = get_masked_lm_array("layer_norm/gamma")
lm_head.LayerNorm.bias.data = get_masked_lm_array("layer_norm/beta")
model.bert.embeddings.word_embeddings.weight.data = get_masked_lm_array("embedding_table")
# Pooling
model.bert.pooler = BertPooler(config=config)
model.bert.pooler.dense.weight.data: BertPooler = get_encoder_array("_pooler_layer/kernel")
model.bert.pooler.dense.bias.data: BertPooler = get_encoder_array("_pooler_layer/bias")
# Export final model
model.save_pretrained(pytorch_dump_path)
# Integration test - should load without any errors ;)
new_model = BertForMaskedLM.from_pretrained(pytorch_dump_path)
print(new_model.eval())
print("Model conversion was done sucessfully!") | null |
11,212 | from typing import Optional
import torch
from torch import nn
from ...modeling_utils import PreTrainedModel
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from ..auto.configuration_auto import AutoConfig
from ..auto.modeling_auto import AutoModel
from ..clip.modeling_clip import CLIPOutput, CLIPVisionConfig, CLIPVisionModel
from .configuration_vision_text_dual_encoder import VisionTextDualEncoderConfig
def contrastive_loss(logits: torch.Tensor) -> torch.Tensor:
return nn.functional.cross_entropy(logits, torch.arange(len(logits), device=logits.device))
def clip_loss(similarity: torch.Tensor) -> torch.Tensor:
caption_loss = contrastive_loss(similarity)
image_loss = contrastive_loss(similarity.t())
return (caption_loss + image_loss) / 2.0 | null |
11,213 | import copy
import math
import os
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
ModelOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_canine import CanineConfig
logger = logging.get_logger(__name__)
The provided code snippet includes necessary dependencies for implementing the `load_tf_weights_in_canine` function. Write a Python function `def load_tf_weights_in_canine(model, config, tf_checkpoint_path)` to solve the following problem:
Load tf checkpoints in a pytorch model.
Here is the function:
def load_tf_weights_in_canine(model, config, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array)
for name, array in zip(names, arrays):
name = name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
# also discard the cls weights (which were used for the next sentence prediction pre-training task)
if any(
n
in [
"adam_v",
"adam_m",
"AdamWeightDecayOptimizer",
"AdamWeightDecayOptimizer_1",
"global_step",
"cls",
"autoregressive_decoder",
"char_output_weights",
]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
continue
# if first scope name starts with "bert", change it to "encoder"
if name[0] == "bert":
name[0] = "encoder"
# remove "embeddings" middle name of HashBucketCodepointEmbedders
elif name[1] == "embeddings":
name.remove(name[1])
# rename segment_embeddings to token_type_embeddings
elif name[1] == "segment_embeddings":
name[1] = "token_type_embeddings"
# rename initial convolutional projection layer
elif name[1] == "initial_char_encoder":
name = ["chars_to_molecules"] + name[-2:]
# rename final convolutional projection layer
elif name[0] == "final_char_encoder" and name[1] in ["LayerNorm", "conv"]:
name = ["projection"] + name[1:]
pointer = model
for m_name in name:
if (re.fullmatch(r"[A-Za-z]+_\d+", m_name)) and "Embedder" not in m_name:
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "kernel" or scope_names[0] == "gamma":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "output_weights":
pointer = getattr(pointer, "weight")
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if m_name[-11:] == "_embeddings":
pointer = getattr(pointer, "weight")
elif m_name[-10:] in [f"Embedder_{i}" for i in range(8)]:
pointer = getattr(pointer, "weight")
elif m_name == "kernel":
array = np.transpose(array)
if pointer.shape != array.shape:
raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched")
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model | Load tf checkpoints in a pytorch model. |
11,214 | import argparse
from transformers import CanineConfig, CanineModel, CanineTokenizer, load_tf_weights_in_canine
from transformers.utils import logging
def convert_tf_checkpoint_to_pytorch(tf_checkpoint_path, pytorch_dump_path):
# Initialize PyTorch model
config = CanineConfig()
model = CanineModel(config)
model.eval()
print(f"Building PyTorch model from configuration: {config}")
# Load weights from tf checkpoint
load_tf_weights_in_canine(model, config, tf_checkpoint_path)
# Save pytorch-model (weights and configuration)
print(f"Save PyTorch model to {pytorch_dump_path}")
model.save_pretrained(pytorch_dump_path)
# Save tokenizer files
tokenizer = CanineTokenizer()
print(f"Save tokenizer files to {pytorch_dump_path}")
tokenizer.save_pretrained(pytorch_dump_path) | null |
11,215 | import json
import os
import re
import unicodedata
from typing import List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `get_pairs` function. Write a Python function `def get_pairs(word)` to solve the following problem:
Return set of symbol pairs in a word. word is represented as tuple of symbols (symbols being variable-length strings)
Here is the function:
def get_pairs(word):
"""
Return set of symbol pairs in a word. word is represented as tuple of symbols (symbols being variable-length
strings)
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
return pairs | Return set of symbol pairs in a word. word is represented as tuple of symbols (symbols being variable-length strings) |
11,216 | import json
import os
import re
import unicodedata
from typing import List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `replace_unicode_punct` function. Write a Python function `def replace_unicode_punct(text)` to solve the following problem:
Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/replace-unicode-punctuation.perl
Here is the function:
def replace_unicode_punct(text):
"""
Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/replace-unicode-punctuation.perl
"""
text = text.replace("，", ",")
text = re.sub(r"。\s*", ". ", text)
text = text.replace("、", ",")
text = text.replace("”", '"')
text = text.replace("“", '"')
text = text.replace("∶", ":")
text = text.replace("：", ":")
text = text.replace("？", "?")
text = text.replace("《", '"')
text = text.replace("》", '"')
text = text.replace("）", ")")
text = text.replace("！", "!")
text = text.replace("（", "(")
text = text.replace("；", ";")
text = text.replace("１", "1")
text = text.replace("」", '"')
text = text.replace("「", '"')
text = text.replace("０", "0")
text = text.replace("３", "3")
text = text.replace("２", "2")
text = text.replace("５", "5")
text = text.replace("６", "6")
text = text.replace("９", "9")
text = text.replace("７", "7")
text = text.replace("８", "8")
text = text.replace("４", "4")
text = re.sub(r"．\s*", ". ", text)
text = text.replace("～", "~")
text = text.replace("’", "'")
text = text.replace("…", "...")
text = text.replace("━", "-")
text = text.replace("〈", "<")
text = text.replace("〉", ">")
text = text.replace("【", "[")
text = text.replace("】", "]")
text = text.replace("％", "%")
return text | Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/replace-unicode-punctuation.perl |
11,217 | import json
import os
import re
import unicodedata
from typing import List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `remove_non_printing_char` function. Write a Python function `def remove_non_printing_char(text)` to solve the following problem:
Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/remove-non-printing-char.perl
Here is the function:
def remove_non_printing_char(text):
"""
Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/remove-non-printing-char.perl
"""
output = []
for char in text:
cat = unicodedata.category(char)
if cat.startswith("C"):
continue
output.append(char)
return "".join(output) | Port of https://github.com/moses-smt/mosesdecoder/blob/master/scripts/tokenizer/remove-non-printing-char.perl |
11,218 | import json
import os
import re
import unicodedata
from typing import List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `whitespace_tokenize` function. Write a Python function `def whitespace_tokenize(text)` to solve the following problem:
Runs basic whitespace cleaning and splitting on a piece of text.
Here is the function:
def whitespace_tokenize(text):
"""Runs basic whitespace cleaning and splitting on a piece of text."""
text = text.strip()
if not text:
return []
tokens = text.split()
return tokens | Runs basic whitespace cleaning and splitting on a piece of text. |
11,219 | from typing import Callable, Optional, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxMaskedLMOutput,
FlaxMultipleChoiceModelOutput,
FlaxQuestionAnsweringModelOutput,
FlaxSequenceClassifierOutput,
FlaxTokenClassifierOutput,
)
from ...modeling_flax_utils import ACT2FN, FlaxPreTrainedModel, append_call_sample_docstring, overwrite_call_docstring
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_roformer import RoFormerConfig
def create_sinusoidal_positions(n_pos, dim):
position_enc = np.array([[pos / np.power(10000, 2 * (j // 2) / dim) for j in range(dim)] for pos in range(n_pos)])
sentinel = dim // 2 + dim % 2
out = np.zeros_like(position_enc)
out[:, 0:sentinel] = np.sin(position_enc[:, 0::2])
out[:, sentinel:] = np.cos(position_enc[:, 1::2])
return jnp.array(out) | null |
11,220 | import argparse
import torch
from transformers import RoFormerConfig, RoFormerForMaskedLM, load_tf_weights_in_roformer
from transformers.utils import logging
def convert_tf_checkpoint_to_pytorch(tf_checkpoint_path, bert_config_file, pytorch_dump_path):
# Initialise PyTorch model
config = RoFormerConfig.from_json_file(bert_config_file)
print(f"Building PyTorch model from configuration: {config}")
model = RoFormerForMaskedLM(config)
# Load weights from tf checkpoint
load_tf_weights_in_roformer(model, config, tf_checkpoint_path)
# Save pytorch-model
print(f"Save PyTorch model to {pytorch_dump_path}")
torch.save(model.state_dict(), pytorch_dump_path, _use_new_zipfile_serialization=False) | null |
11,223 | import math
import os
from typing import Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import BCEWithLogitsLoss, CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, SequenceSummary
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_roformer import RoFormerConfig
logger = logging.get_logger(__name__)
The provided code snippet includes necessary dependencies for implementing the `load_tf_weights_in_roformer` function. Write a Python function `def load_tf_weights_in_roformer(model, config, tf_checkpoint_path)` to solve the following problem:
Load tf checkpoints in a pytorch model.
Here is the function:
def load_tf_weights_in_roformer(model, config, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name.replace("bert", "roformer"))
arrays.append(array)
for name, array in zip(names, arrays):
name = name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if any(
n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
continue
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "kernel" or scope_names[0] == "gamma":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "output_weights":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "squad":
pointer = getattr(pointer, "classifier")
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if m_name[-11:] == "_embeddings":
pointer = getattr(pointer, "weight")
elif m_name == "kernel":
array = np.transpose(array)
try:
if not pointer.shape == array.shape:
raise ValueError(f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched")
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model | Load tf checkpoints in a pytorch model. |
11,224 | import math
from typing import List, Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import nn
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput, DepthEstimatorOutput
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import (
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_glpn import GLPNConfig
The provided code snippet includes necessary dependencies for implementing the `drop_path` function. Write a Python function `def drop_path(input, drop_prob: float = 0.0, training: bool = False)` to solve the following problem:
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks, however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper... See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the argument.
Here is the function:
def drop_path(input, drop_prob: float = 0.0, training: bool = False):
"""
Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks).
Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks,
however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper...
See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the
layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the
argument.
"""
if drop_prob == 0.0 or not training:
return input
keep_prob = 1 - drop_prob
shape = (input.shape[0],) + (1,) * (input.ndim - 1) # work with diff dim tensors, not just 2D ConvNets
random_tensor = keep_prob + torch.rand(shape, dtype=input.dtype, device=input.device)
random_tensor.floor_() # binarize
output = input.div(keep_prob) * random_tensor
return output | Drop paths (Stochastic Depth) per sample (when applied in main path of residual blocks). Comment by Ross Wightman: This is the same as the DropConnect impl I created for EfficientNet, etc networks, however, the original name is misleading as 'Drop Connect' is a different form of dropout in a separate paper... See discussion: https://github.com/tensorflow/tpu/issues/494#issuecomment-532968956 ... I've opted for changing the layer and argument names to 'drop path' rather than mix DropConnect as a layer name and use 'survival rate' as the argument. |
11,225 | import argparse
from collections import OrderedDict
from pathlib import Path
import torch
from PIL import Image
import requests
from transformers import GLPNConfig, GLPNFeatureExtractor, GLPNForDepthEstimation
from transformers.utils import logging
logger = logging.get_logger(__name__)
def rename_keys(state_dict):
new_state_dict = OrderedDict()
for key, value in state_dict.items():
if key.startswith("module.encoder"):
key = key.replace("module.encoder", "glpn.encoder")
if key.startswith("module.decoder"):
key = key.replace("module.decoder", "decoder.stages")
if "patch_embed" in key:
# replace for example patch_embed1 by patch_embeddings.0
idx = key[key.find("patch_embed") + len("patch_embed")]
key = key.replace(f"patch_embed{idx}", f"patch_embeddings.{int(idx)-1}")
if "norm" in key:
key = key.replace("norm", "layer_norm")
if "glpn.encoder.layer_norm" in key:
# replace for example layer_norm1 by layer_norm.0
idx = key[key.find("glpn.encoder.layer_norm") + len("glpn.encoder.layer_norm")]
key = key.replace(f"layer_norm{idx}", f"layer_norm.{int(idx)-1}")
if "layer_norm1" in key:
key = key.replace("layer_norm1", "layer_norm_1")
if "layer_norm2" in key:
key = key.replace("layer_norm2", "layer_norm_2")
if "block" in key:
# replace for example block1 by block.0
idx = key[key.find("block") + len("block")]
key = key.replace(f"block{idx}", f"block.{int(idx)-1}")
if "attn.q" in key:
key = key.replace("attn.q", "attention.self.query")
if "attn.proj" in key:
key = key.replace("attn.proj", "attention.output.dense")
if "attn" in key:
key = key.replace("attn", "attention.self")
if "fc1" in key:
key = key.replace("fc1", "dense1")
if "fc2" in key:
key = key.replace("fc2", "dense2")
if "linear_pred" in key:
key = key.replace("linear_pred", "classifier")
if "linear_fuse" in key:
key = key.replace("linear_fuse.conv", "linear_fuse")
key = key.replace("linear_fuse.bn", "batch_norm")
if "linear_c" in key:
# replace for example linear_c4 by linear_c.3
idx = key[key.find("linear_c") + len("linear_c")]
key = key.replace(f"linear_c{idx}", f"linear_c.{int(idx)-1}")
if "bot_conv" in key:
key = key.replace("bot_conv", "0.convolution")
if "skip_conv1" in key:
key = key.replace("skip_conv1", "1.convolution")
if "skip_conv2" in key:
key = key.replace("skip_conv2", "2.convolution")
if "fusion1" in key:
key = key.replace("fusion1", "1.fusion")
if "fusion2" in key:
key = key.replace("fusion2", "2.fusion")
if "fusion3" in key:
key = key.replace("fusion3", "3.fusion")
if "fusion" in key and "conv" in key:
key = key.replace("conv", "convolutional_layer")
if key.startswith("module.last_layer_depth"):
key = key.replace("module.last_layer_depth", "head.head")
new_state_dict[key] = value
return new_state_dict
def read_in_k_v(state_dict, config):
# for each of the encoder blocks:
for i in range(config.num_encoder_blocks):
for j in range(config.depths[i]):
# read in weights + bias of keys and values (which is a single matrix in the original implementation)
kv_weight = state_dict.pop(f"glpn.encoder.block.{i}.{j}.attention.self.kv.weight")
kv_bias = state_dict.pop(f"glpn.encoder.block.{i}.{j}.attention.self.kv.bias")
# next, add keys and values (in that order) to the state dict
state_dict[f"glpn.encoder.block.{i}.{j}.attention.self.key.weight"] = kv_weight[
: config.hidden_sizes[i], :
]
state_dict[f"glpn.encoder.block.{i}.{j}.attention.self.key.bias"] = kv_bias[: config.hidden_sizes[i]]
state_dict[f"glpn.encoder.block.{i}.{j}.attention.self.value.weight"] = kv_weight[
config.hidden_sizes[i] :, :
]
state_dict[f"glpn.encoder.block.{i}.{j}.attention.self.value.bias"] = kv_bias[config.hidden_sizes[i] :]
def prepare_img():
url = "http://images.cocodataset.org/val2017/000000039769.jpg"
image = Image.open(requests.get(url, stream=True).raw)
return image
The provided code snippet includes necessary dependencies for implementing the `convert_glpn_checkpoint` function. Write a Python function `def convert_glpn_checkpoint(checkpoint_path, pytorch_dump_folder_path, push_to_hub=False, model_name=None)` to solve the following problem:
Copy/paste/tweak model's weights to our GLPN structure.
Here is the function:
def convert_glpn_checkpoint(checkpoint_path, pytorch_dump_folder_path, push_to_hub=False, model_name=None):
"""
Copy/paste/tweak model's weights to our GLPN structure.
"""
# load GLPN configuration (Segformer-B4 size)
config = GLPNConfig(hidden_sizes=[64, 128, 320, 512], decoder_hidden_size=64, depths=[3, 8, 27, 3])
# load feature extractor (only resize + rescale)
feature_extractor = GLPNFeatureExtractor()
# prepare image
image = prepare_img()
pixel_values = feature_extractor(images=image, return_tensors="pt").pixel_values
logger.info("Converting model...")
# load original state dict
state_dict = torch.load(checkpoint_path, map_location=torch.device("cpu"))
# rename keys
state_dict = rename_keys(state_dict)
# key and value matrices need special treatment
read_in_k_v(state_dict, config)
# create HuggingFace model and load state dict
model = GLPNForDepthEstimation(config)
model.load_state_dict(state_dict)
model.eval()
# forward pass
outputs = model(pixel_values)
predicted_depth = outputs.predicted_depth
# verify output
if model_name is not None:
if "nyu" in model_name:
expected_slice = torch.tensor(
[[4.4147, 4.0873, 4.0673], [3.7890, 3.2881, 3.1525], [3.7674, 3.5423, 3.4913]]
)
elif "kitti" in model_name:
expected_slice = torch.tensor(
[[3.4291, 2.7865, 2.5151], [3.2841, 2.7021, 2.3502], [3.1147, 2.4625, 2.2481]]
)
else:
raise ValueError(f"Unknown model name: {model_name}")
expected_shape = torch.Size([1, 480, 640])
assert predicted_depth.shape == expected_shape
assert torch.allclose(predicted_depth[0, :3, :3], expected_slice, atol=1e-4)
print("Looks ok!")
# finally, push to hub if required
if push_to_hub:
logger.info("Pushing model and feature extractor to the hub...")
model.push_to_hub(
repo_path_or_name=Path(pytorch_dump_folder_path, model_name),
organization="nielsr",
commit_message="Add model",
use_temp_dir=True,
)
feature_extractor.push_to_hub(
repo_path_or_name=Path(pytorch_dump_folder_path, model_name),
organization="nielsr",
commit_message="Add feature extractor",
use_temp_dir=True,
) | Copy/paste/tweak model's weights to our GLPN structure. |
11,226 | import math
import random
from typing import List, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_m2m_100 import M2M100Config
The provided code snippet includes necessary dependencies for implementing the `shift_tokens_right` function. Write a Python function `def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int, decoder_start_token_id: int)` to solve the following problem:
Shift input ids one token to the right.
Here is the function:
def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int, decoder_start_token_id: int):
"""
Shift input ids one token to the right.
"""
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[:, 1:] = input_ids[:, :-1].clone()
shifted_input_ids[:, 0] = decoder_start_token_id
if pad_token_id is None:
raise ValueError("self.model.config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids.masked_fill_(shifted_input_ids == -100, pad_token_id)
return shifted_input_ids | Shift input ids one token to the right. |
11,227 | import math
import random
from typing import List, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_m2m_100 import M2M100Config
The provided code snippet includes necessary dependencies for implementing the `_make_causal_mask` function. Write a Python function `def _make_causal_mask(input_ids_shape: torch.Size, dtype: torch.dtype, past_key_values_length: int = 0)` to solve the following problem:
Make causal mask used for bi-directional self-attention.
Here is the function:
def _make_causal_mask(input_ids_shape: torch.Size, dtype: torch.dtype, past_key_values_length: int = 0):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz, tgt_len = input_ids_shape
mask = torch.full((tgt_len, tgt_len), torch.tensor(torch.finfo(dtype).min))
mask_cond = torch.arange(mask.size(-1))
mask.masked_fill_(mask_cond < (mask_cond + 1).view(mask.size(-1), 1), 0)
mask = mask.to(dtype)
if past_key_values_length > 0:
mask = torch.cat([torch.zeros(tgt_len, past_key_values_length, dtype=dtype), mask], dim=-1)
return mask[None, None, :, :].expand(bsz, 1, tgt_len, tgt_len + past_key_values_length) | Make causal mask used for bi-directional self-attention. |
11,228 | import math
import random
from typing import List, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_m2m_100 import M2M100Config
The provided code snippet includes necessary dependencies for implementing the `_expand_mask` function. Write a Python function `def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None)` to solve the following problem:
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
Here is the function:
def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
bsz, src_len = mask.size()
tgt_len = tgt_len if tgt_len is not None else src_len
expanded_mask = mask[:, None, None, :].expand(bsz, 1, tgt_len, src_len).to(dtype)
inverted_mask = 1.0 - expanded_mask
return inverted_mask.masked_fill(inverted_mask.to(torch.bool), torch.finfo(dtype).min) | Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`. |
11,229 | import math
import random
from typing import List, Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...deepspeed import is_deepspeed_zero3_enabled
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_m2m_100 import M2M100Config
The provided code snippet includes necessary dependencies for implementing the `create_position_ids_from_input_ids` function. Write a Python function `def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0)` to solve the following problem:
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`.
Here is the function:
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx | Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols are ignored. This is modified from fairseq's `utils.make_positions`. |
11,230 | import argparse
import torch
from torch import nn
from transformers import M2M100Config, M2M100ForConditionalGeneration
def remove_ignore_keys_(state_dict):
ignore_keys = [
"encoder.version",
"decoder.version",
"model.encoder.version",
"model.decoder.version",
"decoder.output_projection.weight",
"_float_tensor",
"encoder.embed_positions._float_tensor",
"decoder.embed_positions._float_tensor",
]
for k in ignore_keys:
state_dict.pop(k, None)
def make_linear_from_emb(emb):
vocab_size, emb_size = emb.weight.shape
lin_layer = nn.Linear(vocab_size, emb_size, bias=False)
lin_layer.weight.data = emb.weight.data
return lin_layer
def convert_fairseq_m2m100_checkpoint_from_disk(checkpoint_path):
m2m_100 = torch.load(checkpoint_path, map_location="cpu")
args = m2m_100["args"] or m2m_100["cfg"]["model"]
state_dict = m2m_100["model"]
remove_ignore_keys_(state_dict)
vocab_size = state_dict["encoder.embed_tokens.weight"].shape[0]
config = M2M100Config(
vocab_size=vocab_size,
max_position_embeddings=1024,
encoder_layers=args.encoder_layers,
decoder_layers=args.decoder_layers,
encoder_attention_heads=args.encoder_attention_heads,
decoder_attention_heads=args.decoder_attention_heads,
encoder_ffn_dim=args.encoder_ffn_embed_dim,
decoder_ffn_dim=args.decoder_ffn_embed_dim,
d_model=args.encoder_embed_dim,
encoder_layerdrop=args.encoder_layerdrop,
decoder_layerdrop=args.decoder_layerdrop,
dropout=args.dropout,
attention_dropout=args.attention_dropout,
activation_dropout=args.activation_dropout,
activation_function="relu",
)
state_dict["shared.weight"] = state_dict["decoder.embed_tokens.weight"]
model = M2M100ForConditionalGeneration(config)
model.model.load_state_dict(state_dict, strict=False)
model.lm_head = make_linear_from_emb(model.model.shared)
return model | null |
11,231 | import json
import os
from pathlib import Path
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple, Union
import sentencepiece
from ...tokenization_utils import BatchEncoding, PreTrainedTokenizer
from ...utils import logging
def load_spm(path: str, sp_model_kwargs: Dict[str, Any]) -> sentencepiece.SentencePieceProcessor:
spm = sentencepiece.SentencePieceProcessor(**sp_model_kwargs)
spm.Load(str(path))
return spm | null |
11,232 | import json
import os
from pathlib import Path
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple, Union
import sentencepiece
from ...tokenization_utils import BatchEncoding, PreTrainedTokenizer
from ...utils import logging
def load_json(path: str) -> Union[Dict, List]:
with open(path, "r") as f:
return json.load(f) | null |
11,233 | import json
import os
from pathlib import Path
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple, Union
import sentencepiece
from ...tokenization_utils import BatchEncoding, PreTrainedTokenizer
from ...utils import logging
def save_json(data, path: str) -> None:
with open(path, "w") as f:
json.dump(data, f, indent=2) | null |
11,234 | import copy
import math
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import Tensor, nn
from torch.nn import LayerNorm
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_xlm_prophetnet import XLMProphetNetConfig
def softmax(hidden_state, dim, onnx_trace=False):
if onnx_trace:
return nn.functional.softmax(hidden_state.float(), dim=dim)
else:
return nn.functional.softmax(hidden_state, dim=dim, dtype=torch.float32) | null |
11,235 | import copy
import math
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import Tensor, nn
from torch.nn import LayerNorm
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_xlm_prophetnet import XLMProphetNetConfig
The provided code snippet includes necessary dependencies for implementing the `ngram_attention_bias` function. Write a Python function `def ngram_attention_bias(sequence_length, ngram, device, dtype)` to solve the following problem:
This function computes the bias for the predict stream
Here is the function:
def ngram_attention_bias(sequence_length, ngram, device, dtype):
"""
This function computes the bias for the predict stream
"""
left_block = (
torch.ones((ngram, sequence_length, sequence_length), device=device, dtype=dtype) * torch.finfo(dtype).min
)
right_block = left_block.detach().clone()
# create bias
for stream_idx in range(ngram):
right_block[stream_idx].fill_diagonal_(0, wrap=False)
left_block[stream_idx].triu_(-stream_idx + 1)
left_block[:, :, 0] = 0
return torch.cat([left_block, right_block], dim=2) | This function computes the bias for the predict stream |
11,236 | import copy
import math
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
import torch.utils.checkpoint
from torch import Tensor, nn
from torch.nn import LayerNorm
from ...activations import ACT2FN
from ...modeling_outputs import BaseModelOutput
from ...modeling_utils import PreTrainedModel
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_xlm_prophetnet import XLMProphetNetConfig
def compute_relative_buckets(num_buckets, max_distance, relative_positions, is_bidirectional=False):
"""
This function computes individual parts of the relative position buckets. For more detail, see paper.
"""
inv_relative_positions = -relative_positions
rel_positions_bucket = 0
if is_bidirectional:
num_buckets = num_buckets // 2
rel_positions_bucket = (
rel_positions_bucket
+ torch.lt(inv_relative_positions, torch.zeros_like(inv_relative_positions)).int() * num_buckets
)
inv_relative_positions = torch.abs(inv_relative_positions)
else:
inv_relative_positions = torch.max(inv_relative_positions, torch.zeros_like(inv_relative_positions))
max_exact = num_buckets // 2
is_small = torch.lt(inv_relative_positions, max_exact)
val_if_large = max_exact + torch.log(inv_relative_positions.float() / max_exact) / math.log(
max_distance / max_exact
) * (num_buckets - max_exact)
val_if_large = torch.min(val_if_large, torch.ones_like(val_if_large) * (num_buckets - 1)).int()
rel_positions_bucket = rel_positions_bucket + torch.where(is_small, inv_relative_positions.int(), val_if_large)
return rel_positions_bucket
The provided code snippet includes necessary dependencies for implementing the `compute_all_stream_relative_buckets` function. Write a Python function `def compute_all_stream_relative_buckets(num_buckets, max_distance, position_ids)` to solve the following problem:
This function computes both main and predict relative position buckets. For more detail, see paper.
Here is the function:
def compute_all_stream_relative_buckets(num_buckets, max_distance, position_ids):
"""
This function computes both main and predict relative position buckets. For more detail, see paper.
"""
# main stream
main_stream_relative_positions = position_ids.unsqueeze(1).repeat(1, position_ids.size(-1), 1)
main_stream_relative_positions = main_stream_relative_positions - position_ids.unsqueeze(-1)
# predicting stream
predicting_stream_relative_positions = torch.cat((position_ids - 1, position_ids), dim=-1).unsqueeze(1)
predicting_stream_relative_positions = predicting_stream_relative_positions.repeat(1, position_ids.size(-1), 1)
predicting_stream_relative_positions = predicting_stream_relative_positions - position_ids.unsqueeze(-1)
# get both position buckets
main_relative_position_buckets = compute_relative_buckets(
num_buckets, max_distance, main_stream_relative_positions, is_bidirectional=False
)
predict_relative_position_buckets = compute_relative_buckets(
num_buckets, max_distance, predicting_stream_relative_positions, is_bidirectional=False
)
return main_relative_position_buckets, predict_relative_position_buckets | This function computes both main and predict relative position buckets. For more detail, see paper. |
11,237 | import collections
import os
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
The provided code snippet includes necessary dependencies for implementing the `load_vocab` function. Write a Python function `def load_vocab(vocab_file)` to solve the following problem:
Loads a vocabulary file into a dictionary.
Here is the function:
def load_vocab(vocab_file):
"""Loads a vocabulary file into a dictionary."""
vocab = collections.OrderedDict()
with open(vocab_file, "r", encoding="utf-8") as reader:
tokens = reader.readlines()
for index, token in enumerate(tokens):
token = token.rstrip("\n")
vocab[token] = index
return vocab | Loads a vocabulary file into a dictionary. |
11,238 | import math
import random
from functools import partial
from typing import Callable, Optional, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_marian import MarianConfig
def create_sinusoidal_positions(n_pos, dim):
position_enc = np.array([[pos / np.power(10000, 2 * (j // 2) / dim) for j in range(dim)] for pos in range(n_pos)])
sentinel = dim // 2 + dim % 2
out = np.zeros_like(position_enc)
out[:, 0:sentinel] = np.sin(position_enc[:, 0::2])
out[:, sentinel:] = np.cos(position_enc[:, 1::2])
return jnp.array(out) | null |
11,239 | import math
import random
from functools import partial
from typing import Callable, Optional, Tuple
import numpy as np
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from jax.random import PRNGKey
from ...modeling_flax_outputs import (
FlaxBaseModelOutput,
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxSeq2SeqLMOutput,
FlaxSeq2SeqModelOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_marian import MarianConfig
The provided code snippet includes necessary dependencies for implementing the `shift_tokens_right` function. Write a Python function `def shift_tokens_right(input_ids: jnp.ndarray, pad_token_id: int, decoder_start_token_id: int) -> jnp.ndarray` to solve the following problem:
Shift input ids one token to the right.
Here is the function:
def shift_tokens_right(input_ids: jnp.ndarray, pad_token_id: int, decoder_start_token_id: int) -> jnp.ndarray:
"""
Shift input ids one token to the right.
"""
shifted_input_ids = np.zeros_like(input_ids)
shifted_input_ids[:, 1:] = input_ids[:, :-1]
shifted_input_ids[:, 0] = decoder_start_token_id
shifted_input_ids = np.where(shifted_input_ids == -100, pad_token_id, shifted_input_ids)
return shifted_input_ids | Shift input ids one token to the right. |
11,240 | import argparse
import datetime
import json
import os
import re
from pathlib import Path
from typing import Tuple
from tqdm import tqdm
import yaml
from transformers.models.marian.convert_marian_to_pytorch import (
FRONT_MATTER_TEMPLATE,
convert,
convert_opus_name_to_hf_name,
download_and_unzip,
get_system_metadata,
)
def l2front_matter(langs):
return "".join(f"- {l}\n" for l in langs) | null |
11,241 | import argparse
import datetime
import json
import os
import re
from pathlib import Path
from typing import Tuple
from tqdm import tqdm
import yaml
from transformers.models.marian.convert_marian_to_pytorch import (
FRONT_MATTER_TEMPLATE,
convert,
convert_opus_name_to_hf_name,
download_and_unzip,
get_system_metadata,
)
The provided code snippet includes necessary dependencies for implementing the `dedup` function. Write a Python function `def dedup(lst)` to solve the following problem:
Preservers order
Here is the function:
def dedup(lst):
"""Preservers order"""
new_lst = []
for item in lst:
if not item or item in new_lst:
continue
else:
new_lst.append(item)
return new_lst | Preservers order |
11,242 | import random
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPastAndCrossAttentions,
TFSeq2SeqLMOutput,
TFSeq2SeqModelOutput,
)
from ...modeling_tf_utils import (
DUMMY_INPUTS,
TFCausalLanguageModelingLoss,
TFPreTrainedModel,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ContextManagers,
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_marian import MarianConfig
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
def shift_tokens_right(input_ids: tf.Tensor, pad_token_id: int, decoder_start_token_id: int):
pad_token_id = tf.cast(pad_token_id, input_ids.dtype)
decoder_start_token_id = tf.cast(decoder_start_token_id, input_ids.dtype)
start_tokens = tf.fill(
(shape_list(input_ids)[0], 1), tf.convert_to_tensor(decoder_start_token_id, input_ids.dtype)
)
shifted_input_ids = tf.concat([start_tokens, input_ids[:, :-1]], -1)
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids = tf.where(
shifted_input_ids == -100,
tf.fill(shape_list(shifted_input_ids), tf.convert_to_tensor(pad_token_id, input_ids.dtype)),
shifted_input_ids,
)
# "Verify that `labels` has only positive values and -100"
assert_gte0 = tf.debugging.assert_greater_equal(shifted_input_ids, tf.constant(0, dtype=input_ids.dtype))
# Make sure the assertion op is called by wrapping the result in an identity no-op
with tf.control_dependencies([assert_gte0]):
shifted_input_ids = tf.identity(shifted_input_ids)
return shifted_input_ids | null |
11,243 | import random
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPastAndCrossAttentions,
TFSeq2SeqLMOutput,
TFSeq2SeqModelOutput,
)
from ...modeling_tf_utils import (
DUMMY_INPUTS,
TFCausalLanguageModelingLoss,
TFPreTrainedModel,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ContextManagers,
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_marian import MarianConfig
LARGE_NEGATIVE = -1e8
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
The provided code snippet includes necessary dependencies for implementing the `_make_causal_mask` function. Write a Python function `def _make_causal_mask(input_ids_shape: tf.TensorShape, past_key_values_length: int = 0)` to solve the following problem:
Make causal mask used for bi-directional self-attention.
Here is the function:
def _make_causal_mask(input_ids_shape: tf.TensorShape, past_key_values_length: int = 0):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz = input_ids_shape[0]
tgt_len = input_ids_shape[1]
mask = tf.ones((tgt_len, tgt_len)) * LARGE_NEGATIVE
mask_cond = tf.range(shape_list(mask)[-1])
mask = tf.where(mask_cond < tf.reshape(mask_cond + 1, (shape_list(mask)[-1], 1)), 0.0, mask)
if past_key_values_length > 0:
mask = tf.concat([tf.zeros((tgt_len, past_key_values_length)), mask], axis=-1)
return tf.tile(mask[None, None, :, :], (bsz, 1, 1, 1)) | Make causal mask used for bi-directional self-attention. |
11,244 | import random
from typing import Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPastAndCrossAttentions,
TFSeq2SeqLMOutput,
TFSeq2SeqModelOutput,
)
from ...modeling_tf_utils import (
DUMMY_INPUTS,
TFCausalLanguageModelingLoss,
TFPreTrainedModel,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ContextManagers,
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_marian import MarianConfig
LARGE_NEGATIVE = -1e8
def shape_list(tensor: Union[tf.Tensor, np.ndarray]) -> List[int]:
"""
Deal with dynamic shape in tensorflow cleanly.
Args:
tensor (`tf.Tensor` or `np.ndarray`): The tensor we want the shape of.
Returns:
`List[int]`: The shape of the tensor as a list.
"""
if isinstance(tensor, np.ndarray):
return list(tensor.shape)
dynamic = tf.shape(tensor)
if tensor.shape == tf.TensorShape(None):
return dynamic
static = tensor.shape.as_list()
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
The provided code snippet includes necessary dependencies for implementing the `_expand_mask` function. Write a Python function `def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None)` to solve the following problem:
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
Here is the function:
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE | Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`. |
11,245 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def remove_suffix(text: str, suffix: str):
if text.endswith(suffix):
return text[: -len(suffix)]
return text # or whatever | null |
11,246 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def convert_encoder_layer(opus_dict, layer_prefix: str, converter: dict):
def load_layers_(layer_lst: nn.ModuleList, opus_state: dict, converter, is_decoder=False):
for i, layer in enumerate(layer_lst):
layer_tag = f"decoder_l{i + 1}_" if is_decoder else f"encoder_l{i + 1}_"
sd = convert_encoder_layer(opus_state, layer_tag, converter)
layer.load_state_dict(sd, strict=False) | null |
11,247 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def remove_prefix(text: str, prefix: str):
if text.startswith(prefix):
return text[len(prefix) :]
return text # or whatever
The provided code snippet includes necessary dependencies for implementing the `find_pretrained_model` function. Write a Python function `def find_pretrained_model(src_lang: str, tgt_lang: str) -> List[str]` to solve the following problem:
Find models that can accept src_lang as input and return tgt_lang as output.
Here is the function:
def find_pretrained_model(src_lang: str, tgt_lang: str) -> List[str]:
"""Find models that can accept src_lang as input and return tgt_lang as output."""
prefix = "Helsinki-NLP/opus-mt-"
model_list = list_models()
model_ids = [x.modelId for x in model_list if x.modelId.startswith("Helsinki-NLP")]
src_and_targ = [
remove_prefix(m, prefix).lower().split("-") for m in model_ids if "+" not in m
] # + cant be loaded.
matching = [f"{prefix}{a}-{b}" for (a, b) in src_and_targ if src_lang in a and tgt_lang in b]
return matching | Find models that can accept src_lang as input and return tgt_lang as output. |
11,248 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def add_emb_entries(wemb, final_bias, n_special_tokens=1):
vsize, d_model = wemb.shape
embs_to_add = np.zeros((n_special_tokens, d_model))
new_embs = np.concatenate([wemb, embs_to_add])
bias_to_add = np.zeros((n_special_tokens, 1))
new_bias = np.concatenate((final_bias, bias_to_add), axis=1)
return new_embs, new_bias | null |
11,249 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def cast_marian_config(raw_cfg: Dict[str, str]) -> Dict:
CONFIG_KEY = "special:model.yml"
def load_config_from_state_dict(opus_dict):
import yaml
cfg_str = "".join([chr(x) for x in opus_dict[CONFIG_KEY]])
yaml_cfg = yaml.load(cfg_str[:-1], Loader=yaml.BaseLoader)
return cast_marian_config(yaml_cfg) | null |
11,250 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def find_model_file(dest_dir): # this one better
model_files = list(Path(dest_dir).glob("*.npz"))
if len(model_files) != 1:
raise ValueError(f"Found more than one model file: {model_files}")
model_file = model_files[0]
return model_file | null |
11,251 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def remove_prefix(text: str, prefix: str):
if text.startswith(prefix):
return text[len(prefix) :]
return text # or whatever
ORG_NAME = "Helsinki-NLP/"
def convert_hf_name_to_opus_name(hf_model_name):
"""
Relies on the assumption that there are no language codes like pt_br in models that are not in GROUP_TO_OPUS_NAME.
"""
hf_model_name = remove_prefix(hf_model_name, ORG_NAME)
if hf_model_name in GROUP_TO_OPUS_NAME:
opus_w_prefix = GROUP_TO_OPUS_NAME[hf_model_name]
else:
opus_w_prefix = hf_model_name.replace("_", "+")
return remove_prefix(opus_w_prefix, "opus-mt-")
def get_system_metadata(repo_root):
import git
return dict(
helsinki_git_sha=git.Repo(path=repo_root, search_parent_directories=True).head.object.hexsha,
transformers_git_sha=git.Repo(path=".", search_parent_directories=True).head.object.hexsha,
port_machine=socket.gethostname(),
port_time=time.strftime("%Y-%m-%d-%H:%M"),
)
FRONT_MATTER_TEMPLATE = """---
language:
{}
tags:
- translation
license: apache-2.0
---
"""
DEFAULT_REPO = "Tatoeba-Challenge"
The provided code snippet includes necessary dependencies for implementing the `write_model_card` function. Write a Python function `def write_model_card( hf_model_name: str, repo_root=DEFAULT_REPO, save_dir=Path("marian_converted"), dry_run=False, extra_metadata={}, ) -> str` to solve the following problem:
Copy the most recent model's readme section from opus, and add metadata. upload command: aws s3 sync model_card_dir s3://models.huggingface.co/bert/Helsinki-NLP/ --dryrun
Here is the function:
def write_model_card(
hf_model_name: str,
repo_root=DEFAULT_REPO,
save_dir=Path("marian_converted"),
dry_run=False,
extra_metadata={},
) -> str:
"""
Copy the most recent model's readme section from opus, and add metadata. upload command: aws s3 sync model_card_dir
s3://models.huggingface.co/bert/Helsinki-NLP/ --dryrun
"""
import pandas as pd
hf_model_name = remove_prefix(hf_model_name, ORG_NAME)
opus_name: str = convert_hf_name_to_opus_name(hf_model_name)
if repo_root not in ("OPUS-MT-train", "Tatoeba-Challenge"):
raise ValueError(f"Repos root is {repo_root}. Expected either OPUS-MT-train or Tatoeba-Challenge")
opus_readme_path = Path(repo_root).joinpath("models", opus_name, "README.md")
if not (opus_readme_path.exists()):
raise ValueError(f"Readme file {opus_readme_path} not found")
opus_src, opus_tgt = [x.split("+") for x in opus_name.split("-")]
readme_url = f"https://github.com/Helsinki-NLP/{repo_root}/tree/master/models/{opus_name}/README.md"
s, t = ",".join(opus_src), ",".join(opus_tgt)
metadata = {
"hf_name": hf_model_name,
"source_languages": s,
"target_languages": t,
"opus_readme_url": readme_url,
"original_repo": repo_root,
"tags": ["translation"],
}
metadata.update(extra_metadata)
metadata.update(get_system_metadata(repo_root))
# combine with opus markdown
extra_markdown = (
f"### {hf_model_name}\n\n* source group: {metadata['src_name']} \n* target group: "
f"{metadata['tgt_name']} \n* OPUS readme: [{opus_name}]({readme_url})\n"
)
content = opus_readme_path.open().read()
content = content.split("\n# ")[-1] # Get the lowest level 1 header in the README -- the most recent model.
splat = content.split("*")[2:]
print(splat[3])
content = "*".join(splat)
content = (
FRONT_MATTER_TEMPLATE.format(metadata["src_alpha2"])
+ extra_markdown
+ "\n* "
+ content.replace("download", "download original weights")
)
items = "\n\n".join([f"- {k}: {v}" for k, v in metadata.items()])
sec3 = "\n### System Info: \n" + items
content += sec3
if dry_run:
return content, metadata
sub_dir = save_dir / f"opus-mt-{hf_model_name}"
sub_dir.mkdir(exist_ok=True)
dest = sub_dir / "README.md"
dest.open("w").write(content)
pd.Series(metadata).to_json(sub_dir / "metadata.json")
# if dry_run:
return content, metadata | Copy the most recent model's readme section from opus, and add metadata. upload command: aws s3 sync model_card_dir s3://models.huggingface.co/bert/Helsinki-NLP/ --dryrun |
11,252 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def convert_opus_name_to_hf_name(x):
"""For OPUS-MT-Train/ DEPRECATED"""
for substr, grp_name in GROUPS:
x = x.replace(substr, grp_name)
return x.replace("+", "_")
def make_registry(repo_path="Opus-MT-train/models"):
if not (Path(repo_path) / "fr-en" / "README.md").exists():
raise ValueError(
f"repo_path:{repo_path} does not exist: "
"You must run: git clone git@github.com:Helsinki-NLP/Opus-MT-train.git before calling."
)
results = {}
for p in Path(repo_path).iterdir():
n_dash = p.name.count("-")
if n_dash == 0:
continue
else:
lns = list(open(p / "README.md").readlines())
results[p.name] = _parse_readme(lns)
return [(k, v["pre-processing"], v["download"], v["download"][:-4] + ".test.txt") for k, v in results.items()]
def download_and_unzip(url, dest_dir):
try:
import wget
except ImportError:
raise ImportError("you must pip install wget")
filename = wget.download(url)
unzip(filename, dest_dir)
os.remove(filename)
def convert(source_dir: Path, dest_dir):
dest_dir = Path(dest_dir)
dest_dir.mkdir(exist_ok=True)
opus_state = OpusState(source_dir)
# save tokenizer
opus_state.tokenizer.save_pretrained(dest_dir)
# save_json(opus_state.cfg, dest_dir / "marian_original_config.json")
# ^^ Uncomment to save human readable marian config for debugging
model = opus_state.load_marian_model()
model = model.half()
model.save_pretrained(dest_dir)
model.from_pretrained(dest_dir) # sanity check
The provided code snippet includes necessary dependencies for implementing the `convert_all_sentencepiece_models` function. Write a Python function `def convert_all_sentencepiece_models(model_list=None, repo_path=None, dest_dir=Path("marian_converted"))` to solve the following problem:
Requires 300GB
Here is the function:
def convert_all_sentencepiece_models(model_list=None, repo_path=None, dest_dir=Path("marian_converted")):
"""Requires 300GB"""
save_dir = Path("marian_ckpt")
dest_dir = Path(dest_dir)
dest_dir.mkdir(exist_ok=True)
save_paths = []
if model_list is None:
model_list: list = make_registry(repo_path=repo_path)
for k, prepro, download, test_set_url in tqdm(model_list):
if "SentencePiece" not in prepro: # dont convert BPE models.
continue
if not os.path.exists(save_dir / k):
download_and_unzip(download, save_dir / k)
pair_name = convert_opus_name_to_hf_name(k)
convert(save_dir / k, dest_dir / f"opus-mt-{pair_name}")
save_paths.append(dest_dir / f"opus-mt-{pair_name}")
return save_paths | Requires 300GB |
11,253 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def lmap(f, x) -> List:
return list(map(f, x))
def fetch_test_set(test_set_url):
import wget
fname = wget.download(test_set_url, "opus_test.txt")
lns = Path(fname).open().readlines()
src = lmap(str.strip, lns[::4])
gold = lmap(str.strip, lns[1::4])
mar_model = lmap(str.strip, lns[2::4])
if not (len(gold) == len(mar_model) == len(src)):
raise ValueError(f"Gold, marian and source lengths {len(gold)}, {len(mar_model)}, {len(src)} mismatched")
os.remove(fname)
return src, mar_model, gold | null |
11,254 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def convert(source_dir: Path, dest_dir):
dest_dir = Path(dest_dir)
dest_dir.mkdir(exist_ok=True)
opus_state = OpusState(source_dir)
# save tokenizer
opus_state.tokenizer.save_pretrained(dest_dir)
# save_json(opus_state.cfg, dest_dir / "marian_original_config.json")
# ^^ Uncomment to save human readable marian config for debugging
model = opus_state.load_marian_model()
model = model.half()
model.save_pretrained(dest_dir)
model.from_pretrained(dest_dir) # sanity check
def convert_whole_dir(path=Path("marian_ckpt/")):
for subdir in tqdm(list(path.ls())):
dest_dir = f"marian_converted/{subdir.name}"
if (dest_dir / "pytorch_model.bin").exists():
continue
convert(source_dir, dest_dir) | null |
11,255 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def save_tokenizer_config(dest_dir: Path, separate_vocabs=False):
dname = dest_dir.name.split("-")
dct = dict(target_lang=dname[-1], source_lang="-".join(dname[:-1]), separate_vocabs=separate_vocabs)
save_json(dct, dest_dir / "tokenizer_config.json")
def add_to_vocab_(vocab: Dict[str, int], special_tokens: List[str]):
start = max(vocab.values()) + 1
added = 0
for tok in special_tokens:
if tok in vocab:
continue
vocab[tok] = start + added
added += 1
return added
def find_vocab_file(model_dir):
return list(model_dir.glob("*vocab.yml"))[0]
def find_src_vocab_file(model_dir):
return list(model_dir.glob("*src.vocab.yml"))[0]
def find_tgt_vocab_file(model_dir):
return list(model_dir.glob("*trg.vocab.yml"))[0]
def load_yaml(path):
import yaml
with open(path) as f:
return yaml.load(f, Loader=yaml.BaseLoader)
def save_json(content: Union[Dict, List], path: str) -> None:
with open(path, "w") as f:
json.dump(content, f)
def add_special_tokens_to_vocab(model_dir: Path, separate_vocab=False) -> None:
if separate_vocab:
vocab = load_yaml(find_src_vocab_file(model_dir))
vocab = {k: int(v) for k, v in vocab.items()}
num_added = add_to_vocab_(vocab, ["<pad>"])
save_json(vocab, model_dir / "vocab.json")
vocab = load_yaml(find_tgt_vocab_file(model_dir))
vocab = {k: int(v) for k, v in vocab.items()}
num_added = add_to_vocab_(vocab, ["<pad>"])
save_json(vocab, model_dir / "target_vocab.json")
save_tokenizer_config(model_dir, separate_vocabs=separate_vocab)
else:
vocab = load_yaml(find_vocab_file(model_dir))
vocab = {k: int(v) for k, v in vocab.items()}
num_added = add_to_vocab_(vocab, ["<pad>"])
print(f"added {num_added} tokens to vocab")
save_json(vocab, model_dir / "vocab.json")
save_tokenizer_config(model_dir) | null |
11,256 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def check_equal(marian_cfg, k1, k2):
v1, v2 = marian_cfg[k1], marian_cfg[k2]
if v1 != v2:
raise ValueError(f"hparams {k1},{k2} differ: {v1} != {v2}") | null |
11,257 | import argparse
import json
import os
import socket
import time
import warnings
from pathlib import Path
from typing import Dict, List, Union
from zipfile import ZipFile
import numpy as np
import torch
from torch import nn
from tqdm import tqdm
from huggingface_hub.hf_api import list_models
from transformers import MarianConfig, MarianMTModel, MarianTokenizer
def check_marian_cfg_assumptions(marian_cfg):
assumed_settings = {
"layer-normalization": False,
"right-left": False,
"transformer-ffn-depth": 2,
"transformer-aan-depth": 2,
"transformer-no-projection": False,
"transformer-postprocess-emb": "d",
"transformer-postprocess": "dan", # Dropout, add, normalize
"transformer-preprocess": "",
"type": "transformer",
"ulr-dim-emb": 0,
"dec-cell-base-depth": 2,
"dec-cell-high-depth": 1,
"transformer-aan-nogate": False,
}
for k, v in assumed_settings.items():
actual = marian_cfg[k]
if actual != v:
raise ValueError(f"Unexpected config value for {k} expected {v} got {actual}") | null |
11,258 | import json
import os
import re
import warnings
from pathlib import Path
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple, Union
import sentencepiece
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
def load_spm(path: str, sp_model_kwargs: Dict[str, Any]) -> sentencepiece.SentencePieceProcessor:
spm = sentencepiece.SentencePieceProcessor(**sp_model_kwargs)
spm.Load(path)
return spm | null |
11,259 | import json
import os
import re
import warnings
from pathlib import Path
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple, Union
import sentencepiece
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
def save_json(data, path: str) -> None:
with open(path, "w") as f:
json.dump(data, f, indent=2) | null |
11,260 | import json
import os
import re
import warnings
from pathlib import Path
from shutil import copyfile
from typing import Any, Dict, List, Optional, Tuple, Union
import sentencepiece
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
def load_json(path: str) -> Union[Dict, List]:
with open(path, "r") as f:
return json.load(f) | null |
11,261 | import copy
import math
import random
from typing import Dict, List, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_marian import MarianConfig
The provided code snippet includes necessary dependencies for implementing the `shift_tokens_right` function. Write a Python function `def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int, decoder_start_token_id: int)` to solve the following problem:
Shift input ids one token to the right.
Here is the function:
def shift_tokens_right(input_ids: torch.Tensor, pad_token_id: int, decoder_start_token_id: int):
"""
Shift input ids one token to the right.
"""
shifted_input_ids = input_ids.new_zeros(input_ids.shape)
shifted_input_ids[:, 1:] = input_ids[:, :-1].clone()
shifted_input_ids[:, 0] = decoder_start_token_id
if pad_token_id is None:
raise ValueError("self.model.config.pad_token_id has to be defined.")
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids.masked_fill_(shifted_input_ids == -100, pad_token_id)
return shifted_input_ids | Shift input ids one token to the right. |
11,262 | import copy
import math
import random
from typing import Dict, List, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_marian import MarianConfig
The provided code snippet includes necessary dependencies for implementing the `_make_causal_mask` function. Write a Python function `def _make_causal_mask(input_ids_shape: torch.Size, dtype: torch.dtype, past_key_values_length: int = 0)` to solve the following problem:
Make causal mask used for bi-directional self-attention.
Here is the function:
def _make_causal_mask(input_ids_shape: torch.Size, dtype: torch.dtype, past_key_values_length: int = 0):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz, tgt_len = input_ids_shape
mask = torch.full((tgt_len, tgt_len), torch.tensor(torch.finfo(dtype).min))
mask_cond = torch.arange(mask.size(-1))
mask.masked_fill_(mask_cond < (mask_cond + 1).view(mask.size(-1), 1), 0)
mask = mask.to(dtype)
if past_key_values_length > 0:
mask = torch.cat([torch.zeros(tgt_len, past_key_values_length, dtype=dtype), mask], dim=-1)
return mask[None, None, :, :].expand(bsz, 1, tgt_len, tgt_len + past_key_values_length) | Make causal mask used for bi-directional self-attention. |
11,263 | import copy
import math
import random
from typing import Dict, List, Optional, Tuple, Union
import numpy as np
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutput,
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
Seq2SeqLMOutput,
Seq2SeqModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...utils import (
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
logging,
replace_return_docstrings,
)
from .configuration_marian import MarianConfig
The provided code snippet includes necessary dependencies for implementing the `_expand_mask` function. Write a Python function `def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None)` to solve the following problem:
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
Here is the function:
def _expand_mask(mask: torch.Tensor, dtype: torch.dtype, tgt_len: Optional[int] = None):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
bsz, src_len = mask.size()
tgt_len = tgt_len if tgt_len is not None else src_len
expanded_mask = mask[:, None, None, :].expand(bsz, 1, tgt_len, src_len).to(dtype)
inverted_mask = 1.0 - expanded_mask
return inverted_mask.masked_fill(inverted_mask.to(torch.bool), torch.finfo(dtype).min) | Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`. |
11,264 | import collections
import os
import unicodedata
from typing import List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import BatchEncoding
from ...utils import PaddingStrategy, logging
The provided code snippet includes necessary dependencies for implementing the `load_vocab` function. Write a Python function `def load_vocab(vocab_file)` to solve the following problem:
Loads a vocabulary file into a dictionary.
Here is the function:
def load_vocab(vocab_file):
"""Loads a vocabulary file into a dictionary."""
vocab = collections.OrderedDict()
with open(vocab_file, "r", encoding="utf-8") as reader:
tokens = reader.readlines()
for index, token in enumerate(tokens):
token = token.rstrip("\n")
vocab[token] = index
return vocab | Loads a vocabulary file into a dictionary. |
11,265 | import collections
import os
import unicodedata
from typing import List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import BatchEncoding
from ...utils import PaddingStrategy, logging
The provided code snippet includes necessary dependencies for implementing the `whitespace_tokenize` function. Write a Python function `def whitespace_tokenize(text)` to solve the following problem:
Runs basic whitespace cleaning and splitting on a piece of text.
Here is the function:
def whitespace_tokenize(text):
"""Runs basic whitespace cleaning and splitting on a piece of text."""
text = text.strip()
if not text:
return []
tokens = text.split()
return tokens | Runs basic whitespace cleaning and splitting on a piece of text. |
11,266 | import math
import os
from dataclasses import dataclass
from typing import Optional, Tuple, Union
import torch
from torch import nn
from torch.nn import CrossEntropyLoss
from ...activations import ACT2FN
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
ModelOutput,
)
from ...modeling_utils import PreTrainedModel
from ...pytorch_utils import apply_chunking_to_forward, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import add_start_docstrings, add_start_docstrings_to_model_forward, logging, replace_return_docstrings
from .configuration_realm import RealmConfig
logger = logging.get_logger(__name__)
class RealmEmbedder(RealmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.realm = RealmBertModel(self.config)
self.cls = RealmScorerProjection(self.config)
self.post_init()
def get_input_embeddings(self):
return self.realm.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.realm.embeddings.word_embeddings = value
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
Returns:
Example:
```python
>>> from transformers import RealmTokenizer, RealmEmbedder
>>> import torch
>>> tokenizer = RealmTokenizer.from_pretrained("google/realm-cc-news-pretrained-embedder")
>>> model = RealmEmbedder.from_pretrained("google/realm-cc-news-pretrained-embedder")
>>> inputs = tokenizer("Hello, my dog is cute", return_tensors="pt")
>>> outputs = model(**inputs)
>>> projected_score = outputs.projected_score
```
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
realm_outputs = self.realm(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# [batch_size, hidden_size]
pooler_output = realm_outputs[1]
# [batch_size, retriever_proj_size]
projected_score = self.cls(pooler_output)
if not return_dict:
return (projected_score,) + realm_outputs[2:4]
else:
return RealmEmbedderOutput(
projected_score=projected_score,
hidden_states=realm_outputs.hidden_states,
attentions=realm_outputs.attentions,
)
"The scorer of REALM outputting relevance scores representing the score of document candidates (before softmax).",
REALM_START_DOCSTRING,
class RealmKnowledgeAugEncoder(RealmPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.realm = RealmBertModel(self.config)
self.cls = RealmOnlyMLMHead(self.config)
self.post_init()
def get_input_embeddings(self):
return self.realm.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.realm.embeddings.word_embeddings = value
def get_output_embeddings(self):
return self.cls.predictions.decoder
def set_output_embeddings(self, new_embeddings):
self.cls.predictions.decoder = new_embeddings
REALM_INPUTS_DOCSTRING.format("batch_size, num_candidates, sequence_length")
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
relevance_score=None,
labels=None,
mlm_mask=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
relevance_score (`torch.FloatTensor` of shape `(batch_size, num_candidates)`, *optional*):
Relevance score derived from RealmScorer, must be specified if you want to compute the masked language
modeling loss.
labels (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Labels for computing the masked language modeling loss. Indices should be in `[-100, 0, ...,
config.vocab_size]` (see `input_ids` docstring) Tokens with indices set to `-100` are ignored (masked), the
loss is only computed for the tokens with labels in `[0, ..., config.vocab_size]`
mlm_mask (`torch.LongTensor` of shape `(batch_size, sequence_length)`, *optional*):
Mask to avoid calculating joint loss on certain positions. If not specified, the loss will not be masked.
Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
Returns:
Example:
```python
>>> import torch
>>> from transformers import RealmTokenizer, RealmKnowledgeAugEncoder
>>> tokenizer = RealmTokenizer.from_pretrained("google/realm-cc-news-pretrained-encoder")
>>> model = RealmKnowledgeAugEncoder.from_pretrained(
... "google/realm-cc-news-pretrained-encoder", num_candidates=2
... )
>>> # batch_size = 2, num_candidates = 2
>>> text = [["Hello world!", "Nice to meet you!"], ["The cute cat.", "The adorable dog."]]
>>> inputs = tokenizer.batch_encode_candidates(text, max_length=10, return_tensors="pt")
>>> outputs = model(**inputs)
>>> logits = outputs.logits
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
(flattened_input_ids, flattened_attention_mask, flattened_token_type_ids) = self._flatten_inputs(
input_ids, attention_mask, token_type_ids
)
joint_outputs = self.realm(
flattened_input_ids,
attention_mask=flattened_attention_mask,
token_type_ids=flattened_token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# [batch_size * num_candidates, joint_seq_len, hidden_size]
joint_output = joint_outputs[0]
# [batch_size * num_candidates, joint_seq_len, vocab_size]
prediction_scores = self.cls(joint_output)
# [batch_size, num_candidates]
candidate_score = relevance_score
masked_lm_loss = None
if labels is not None:
if candidate_score is None:
raise ValueError(
"You have to specify `relevance_score` when `labels` is specified in order to compute loss."
)
batch_size, seq_length = labels.size()
if mlm_mask is None:
mlm_mask = torch.ones_like(labels, dtype=torch.float32)
else:
mlm_mask = mlm_mask.type(torch.float32)
# Compute marginal log-likelihood
loss_fct = CrossEntropyLoss(reduction="none") # -100 index = padding token
# [batch_size * num_candidates * joint_seq_len, vocab_size]
mlm_logits = prediction_scores.view(-1, self.config.vocab_size)
# [batch_size * num_candidates * joint_seq_len]
mlm_targets = labels.tile(1, self.config.num_candidates).view(-1)
# [batch_size, num_candidates, joint_seq_len]
masked_lm_log_prob = -loss_fct(mlm_logits, mlm_targets).view(
batch_size, self.config.num_candidates, seq_length
)
# [batch_size, num_candidates, 1]
candidate_log_prob = candidate_score.log_softmax(-1).unsqueeze(-1)
# [batch_size, num_candidates, joint_seq_len]
joint_gold_log_prob = candidate_log_prob + masked_lm_log_prob
# [batch_size, joint_seq_len]
marginal_gold_log_probs = joint_gold_log_prob.logsumexp(1)
# []
masked_lm_loss = -torch.nansum(torch.sum(marginal_gold_log_probs * mlm_mask) / torch.sum(mlm_mask))
if not return_dict:
output = (prediction_scores,) + joint_outputs[2:4]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=joint_outputs.hidden_states,
attentions=joint_outputs.attentions,
)
class RealmReader(RealmPreTrainedModel):
_keys_to_ignore_on_load_unexpected = [r"pooler", "cls"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.realm = RealmBertModel(config)
self.cls = RealmOnlyMLMHead(config)
self.qa_outputs = RealmReaderProjection(config)
self.post_init()
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
relevance_score=None,
block_mask=None,
start_positions=None,
end_positions=None,
has_answers=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
relevance_score (`torch.FloatTensor` of shape `(searcher_beam_size,)`, *optional*):
Relevance score, which must be specified if you want to compute the logits and marginal log loss.
block_mask (`torch.BoolTensor` of shape `(searcher_beam_size, sequence_length)`, *optional*):
The mask of the evidence block, which must be specified if you want to compute the logits and marginal log
loss.
start_positions (`torch.LongTensor` of shape `(searcher_beam_size,)`, *optional*):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (`torch.LongTensor` of shape `(searcher_beam_size,)`, *optional*):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
has_answers (`torch.BoolTensor` of shape `(searcher_beam_size,)`, *optional*):
Whether or not the evidence block has answer(s).
Returns:
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if relevance_score is None:
raise ValueError("You have to specify `relevance_score` to calculate logits and loss.")
if block_mask is None:
raise ValueError("You have to specify `block_mask` to separate question block and evidence block.")
if token_type_ids.size(1) < self.config.max_span_width:
raise ValueError("The input sequence length must be greater than or equal to config.max_span_width.")
outputs = self.realm(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
# [reader_beam_size, joint_seq_len, hidden_size]
sequence_output = outputs[0]
# [reader_beam_size, num_candidates], [num_candidates], [num_candidates]
reader_logits, candidate_starts, candidate_ends = self.qa_outputs(
sequence_output, block_mask[0 : self.config.reader_beam_size]
)
# [searcher_beam_size, 1]
retriever_logits = torch.unsqueeze(relevance_score[0 : self.config.reader_beam_size], -1)
# [reader_beam_size, num_candidates]
reader_logits += retriever_logits
# []
predicted_block_index = torch.argmax(torch.max(reader_logits, dim=1).values)
# []
predicted_candidate = torch.argmax(torch.max(reader_logits, dim=0).values)
# [1]
predicted_start = torch.index_select(candidate_starts, dim=0, index=predicted_candidate)
# [1]
predicted_end = torch.index_select(candidate_ends, dim=0, index=predicted_candidate)
total_loss = None
retriever_loss = None
reader_loss = None
retriever_correct = None
reader_correct = None
if start_positions is not None and end_positions is not None and has_answers is not None:
def compute_correct_candidates(candidate_starts, candidate_ends, gold_starts, gold_ends):
"""Compute correct span."""
# [reader_beam_size, num_answers, num_candidates]
is_gold_start = torch.eq(
torch.unsqueeze(torch.unsqueeze(candidate_starts, 0), 0), torch.unsqueeze(gold_starts, -1)
)
is_gold_end = torch.eq(
torch.unsqueeze(torch.unsqueeze(candidate_ends, 0), 0), torch.unsqueeze(gold_ends, -1)
)
# [reader_beam_size, num_candidates]
return torch.any(torch.logical_and(is_gold_start, is_gold_end), 1)
def marginal_log_loss(logits, is_correct):
"""Loss based on the negative marginal log-likelihood."""
def mask_to_score(mask, dtype=torch.float32):
return (1.0 - mask.type(dtype)) * torch.finfo(dtype).min
# []
log_numerator = torch.logsumexp(logits + mask_to_score(is_correct, dtype=logits.dtype), dim=-1)
log_denominator = torch.logsumexp(logits, dim=-1)
return log_denominator - log_numerator
# sometimes the start/end positions are outside our model inputs, we ignore these terms
# `-1` is reserved for no answer.
ignored_index = sequence_output.size(1)
start_positions = start_positions.clamp(-1, ignored_index)
end_positions = end_positions.clamp(-1, ignored_index)
retriever_correct = has_answers
any_retriever_correct = torch.any(retriever_correct)
reader_correct = compute_correct_candidates(
candidate_starts=candidate_starts,
candidate_ends=candidate_ends,
gold_starts=start_positions[0 : self.config.reader_beam_size],
gold_ends=end_positions[0 : self.config.reader_beam_size],
)
any_reader_correct = torch.any(reader_correct)
retriever_loss = marginal_log_loss(relevance_score, retriever_correct)
reader_loss = marginal_log_loss(reader_logits.view(-1), reader_correct.view(-1))
retriever_loss *= any_retriever_correct.type(torch.float32)
reader_loss *= any_reader_correct.type(torch.float32)
total_loss = (retriever_loss + reader_loss).mean()
if not return_dict:
output = (predicted_block_index, predicted_candidate, predicted_start, predicted_end) + outputs[2:]
return (
((total_loss, retriever_loss, reader_loss, retriever_correct, reader_correct) + output)
if total_loss is not None
else output
)
return RealmReaderOutput(
loss=total_loss,
retriever_loss=retriever_loss,
reader_loss=reader_loss,
retriever_correct=retriever_correct,
reader_correct=reader_correct,
block_idx=predicted_block_index,
candidate=predicted_candidate,
start_pos=predicted_start,
end_pos=predicted_end,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class RealmForOpenQA(RealmPreTrainedModel):
def __init__(self, config, retriever=None):
super().__init__(config)
self.embedder = RealmEmbedder(config)
self.reader = RealmReader(config)
self.register_buffer(
"block_emb",
torch.zeros(()).new_empty(
size=(config.num_block_records, config.retriever_proj_size),
dtype=torch.float32,
device=torch.device("cpu"),
),
)
self.retriever = retriever
self.post_init()
def searcher_beam_size(self):
if self.training:
return self.config.searcher_beam_size
return self.config.reader_beam_size
def block_embedding_to(self, device):
"""Send `self.block_emb` to a specific device.
Args:
device (`str` or `torch.device`):
The device to which `self.block_emb` will be sent.
"""
self.block_emb = self.block_emb.to(device)
def forward(
self,
input_ids,
attention_mask=None,
token_type_ids=None,
answer_ids=None,
return_dict=None,
):
r"""
Returns:
Example:
```python
>>> import torch
>>> from transformers import RealmForOpenQA, RealmRetriever, RealmTokenizer
>>> retriever = RealmRetriever.from_pretrained("google/realm-orqa-nq-openqa")
>>> tokenizer = RealmTokenizer.from_pretrained("google/realm-orqa-nq-openqa")
>>> model = RealmForOpenQA.from_pretrained("google/realm-orqa-nq-openqa", retriever=retriever)
>>> question = "Who is the pioneer in modern computer science?"
>>> question_ids = tokenizer([question], return_tensors="pt")
>>> answer_ids = tokenizer(
... ["alan mathison turing"],
... add_special_tokens=False,
... return_token_type_ids=False,
... return_attention_mask=False,
... ).input_ids
>>> reader_output, predicted_answer_ids = model(**question_ids, answer_ids=answer_ids, return_dict=False)
>>> predicted_answer = tokenizer.decode(predicted_answer_ids)
>>> loss = reader_output.loss
```"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and input_ids.shape[0] != 1:
raise ValueError("The batch_size of the inputs must be 1.")
question_outputs = self.embedder(
input_ids=input_ids, token_type_ids=token_type_ids, attention_mask=attention_mask, return_dict=True
)
# [1, projection_size]
question_projection = question_outputs[0]
# CPU computation starts.
# [1, block_emb_size]
batch_scores = torch.einsum("BD,QD->QB", self.block_emb, question_projection.to(self.block_emb.device))
# [1, searcher_beam_size]
_, retrieved_block_ids = torch.topk(batch_scores, k=self.searcher_beam_size, dim=-1)
# [searcher_beam_size]
retrieved_block_ids = retrieved_block_ids.squeeze()
# [searcher_beam_size, projection_size]
retrieved_block_emb = torch.index_select(self.block_emb, dim=0, index=retrieved_block_ids)
# CPU computation ends.
# Retrieve possible answers
has_answers, start_pos, end_pos, concat_inputs = self.retriever(
retrieved_block_ids.cpu(), input_ids, answer_ids, max_length=self.config.reader_seq_len
)
concat_inputs = concat_inputs.to(self.reader.device)
block_mask = concat_inputs.special_tokens_mask.type(torch.bool).to(device=self.reader.device)
block_mask.logical_not_().logical_and_(concat_inputs.token_type_ids.type(torch.bool))
if has_answers is not None:
has_answers = torch.tensor(has_answers, dtype=torch.bool, device=self.reader.device)
start_pos = torch.tensor(start_pos, dtype=torch.long, device=self.reader.device)
end_pos = torch.tensor(end_pos, dtype=torch.long, device=self.reader.device)
# [searcher_beam_size]
retrieved_logits = torch.einsum(
"D,BD->B", question_projection.squeeze(), retrieved_block_emb.to(self.reader.device)
)
reader_output = self.reader(
input_ids=concat_inputs.input_ids[0 : self.config.reader_beam_size],
attention_mask=concat_inputs.attention_mask[0 : self.config.reader_beam_size],
token_type_ids=concat_inputs.token_type_ids[0 : self.config.reader_beam_size],
relevance_score=retrieved_logits,
block_mask=block_mask,
has_answers=has_answers,
start_positions=start_pos,
end_positions=end_pos,
return_dict=True,
)
predicted_block = concat_inputs.input_ids[reader_output.block_idx]
predicted_answer_ids = predicted_block[reader_output.start_pos : reader_output.end_pos + 1]
if not return_dict:
return reader_output, predicted_answer_ids
return RealmForOpenQAOutput(
reader_output=reader_output,
predicted_answer_ids=predicted_answer_ids,
)
The provided code snippet includes necessary dependencies for implementing the `load_tf_weights_in_realm` function. Write a Python function `def load_tf_weights_in_realm(model, config, tf_checkpoint_path)` to solve the following problem:
Load tf checkpoints in a pytorch model.
Here is the function:
def load_tf_weights_in_realm(model, config, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import re
import numpy as np
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info(f"Converting TensorFlow checkpoint from {tf_path}")
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info(f"Loading TF weight {name} with shape {shape}")
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array)
for name, array in zip(names, arrays):
if isinstance(model, RealmReader) and "reader" not in name:
logger.info(f"Skipping {name} as it is not {model.__class__.__name__}'s parameter")
continue
# For pretrained openqa reader
if (name.startswith("bert") or name.startswith("cls")) and isinstance(model, RealmForOpenQA):
name = name.replace("bert/", "reader/realm/")
name = name.replace("cls/", "reader/cls/")
# For pretrained encoder
if (name.startswith("bert") or name.startswith("cls")) and isinstance(model, RealmKnowledgeAugEncoder):
name = name.replace("bert/", "realm/")
# For finetuned reader
if name.startswith("reader"):
reader_prefix = "" if isinstance(model, RealmReader) else "reader/"
name = name.replace("reader/module/bert/", f"{reader_prefix}realm/")
name = name.replace("reader/module/cls/", f"{reader_prefix}cls/")
name = name.replace("reader/dense/", f"{reader_prefix}qa_outputs/dense_intermediate/")
name = name.replace("reader/dense_1/", f"{reader_prefix}qa_outputs/dense_output/")
name = name.replace("reader/layer_normalization", f"{reader_prefix}qa_outputs/layer_normalization")
# For embedder and scorer
if name.startswith("module/module/module/"): # finetuned
embedder_prefix = "" if isinstance(model, RealmEmbedder) else "embedder/"
name = name.replace("module/module/module/module/bert/", f"{embedder_prefix}realm/")
name = name.replace("module/module/module/LayerNorm/", f"{embedder_prefix}cls/LayerNorm/")
name = name.replace("module/module/module/dense/", f"{embedder_prefix}cls/dense/")
name = name.replace("module/module/module/module/cls/predictions/", f"{embedder_prefix}cls/predictions/")
name = name.replace("module/module/module/bert/", f"{embedder_prefix}realm/")
name = name.replace("module/module/module/cls/predictions/", f"{embedder_prefix}cls/predictions/")
elif name.startswith("module/module/"): # pretrained
embedder_prefix = "" if isinstance(model, RealmEmbedder) else "embedder/"
name = name.replace("module/module/LayerNorm/", f"{embedder_prefix}cls/LayerNorm/")
name = name.replace("module/module/dense/", f"{embedder_prefix}cls/dense/")
name = name.split("/")
# adam_v and adam_m are variables used in AdamWeightDecayOptimizer to calculated m and v
# which are not required for using pretrained model
if any(
n in ["adam_v", "adam_m", "AdamWeightDecayOptimizer", "AdamWeightDecayOptimizer_1", "global_step"]
for n in name
):
logger.info(f"Skipping {'/'.join(name)}")
continue
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+_\d+", m_name):
scope_names = re.split(r"_(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "kernel" or scope_names[0] == "gamma":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "output_bias" or scope_names[0] == "beta":
pointer = getattr(pointer, "bias")
else:
try:
pointer = getattr(pointer, scope_names[0])
except AttributeError:
logger.info(f"Skipping {'/'.join(name)}")
continue
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
if m_name[-11:] == "_embeddings":
pointer = getattr(pointer, "weight")
elif m_name == "kernel":
array = np.transpose(array)
try:
assert (
pointer.shape == array.shape
), f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched"
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info(f"Initialize PyTorch weight {name}")
pointer.data = torch.from_numpy(array)
return model | Load tf checkpoints in a pytorch model. |
11,267 | import os
from typing import Optional, Union
import numpy as np
from huggingface_hub import hf_hub_download
from transformers import AutoTokenizer
from ...utils import logging
def convert_tfrecord_to_np(block_records_path: str, num_block_records: int) -> np.ndarray:
import tensorflow.compat.v1 as tf
blocks_dataset = tf.data.TFRecordDataset(block_records_path, buffer_size=512 * 1024 * 1024)
blocks_dataset = blocks_dataset.batch(num_block_records, drop_remainder=True)
np_record = next(blocks_dataset.take(1).as_numpy_iterator())
return np_record | null |
11,268 | import enum
import math
from dataclasses import dataclass
from typing import Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPooling,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_tensorflow_probability_available,
logging,
replace_return_docstrings,
requires_backends,
)
from .configuration_tapas import TapasConfig
def _segment_reduce(values, index, segment_reduce_fn, name):
"""
Applies a segment reduction segment-wise.
Args:
values (`tf.Tensor`):
Tensor with segment values.
index (`IndexMap`):
IndexMap.
segment_reduce_fn (`str`):
Name for the reduce operation. One of "sum", "mean", "max" or "min".
name (`str`):
Name for the operation. Currently not used
Returns:
(`IndexMap`): IndexMap of shape batch_shape with elements equal to range(num_segments).
"""
# Flatten the batch dimensions, as segments ops do not support batching.
# However if `values` has extra dimensions to the right keep them
# unflattened. Segmented ops support vector-valued operations.
flat_index = flatten(index)
vector_shape = tf.shape(values)[index.indices.shape.rank :]
flattened_shape = tf.concat([[-1], vector_shape], axis=0)
flat_values = tf.reshape(values, flattened_shape)
segment_means = segment_reduce_fn(
data=flat_values, segment_ids=flat_index.indices, num_segments=flat_index.num_segments
)
# Unflatten the values.
new_shape = tf.concat([index.batch_shape(), [index.num_segments], vector_shape], axis=0)
output_values = tf.reshape(segment_means, new_shape)
output_index = range_index_map(index.batch_shape(), index.num_segments)
return output_values, output_index
The provided code snippet includes necessary dependencies for implementing the `reduce_min` function. Write a Python function `def reduce_min(values, index, name="segmented_reduce_min")` to solve the following problem:
Computes the minimum over segments.
Here is the function:
def reduce_min(values, index, name="segmented_reduce_min"):
"""Computes the minimum over segments."""
return _segment_reduce(values, index, tf.math.unsorted_segment_min, name) | Computes the minimum over segments. |
11,269 | import enum
import math
from dataclasses import dataclass
from typing import Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPooling,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_tensorflow_probability_available,
logging,
replace_return_docstrings,
requires_backends,
)
from .configuration_tapas import TapasConfig
EPSILON_ZERO_DIVISION = 1e-10
CLOSE_ENOUGH_TO_LOG_ZERO = -10000.0
def gather(values, index, name="segmented_gather"):
"""
Gathers from `values` using the index map. For each element in the domain of the index map this operation looks up
a value for that index in `values`. Two elements from the same segment always get assigned the same value.
Args:
values: [B1, ..., Bn, num_segments, V1, ...] Tensor with segment values.
index: [B1, ..., Bn, I1, ..., Ik] IndexMap.
name: Name for the TensorFlow operation.
Returns:
[B1, ..., Bn, I1, ..., Ik, V1, ...] Tensor with the gathered values.
"""
return tf.gather(values, index.indices, batch_dims=index.batch_dims, name=name)
def reduce_mean(values, index, name="segmented_reduce_mean"):
"""
Averages a tensor over its segments. Outputs 0 for empty segments. This operations computes the mean over segments,
with support for:
- Batching using the first dimensions [B1, B2, ..., Bn]. Each element in a batch can have different indices.
- Vectorization using the last dimension [V1, V2, ...]. If they are present the output will be a mean of vectors
rather than scalars.
Only the middle dimensions [I1, ..., Ik] are reduced by the operation.
Args:
values: [B1, B2, ..., Bn, I1, .., Ik, V1, V2, ..] tensor of values to be
averaged.
index: IndexMap [B1, B2, ..., Bn, I1, .., Ik] index defining the segments.
name: Name for the TensorFlow ops.
Returns:
A pair (output_values, output_index) where `output_values` is a tensor of shape [B1, B2, ..., Bn, num_segments,
V1, V2, ..] and `index` is an IndexMap with shape [B1, B2, ..., Bn, num_segments].
"""
return _segment_reduce(values, index, tf.math.unsorted_segment_mean, name)
def reduce_sum(values, index, name="segmented_reduce_sum"):
"""
Sums a tensor over its segments. Outputs 0 for empty segments. This operations computes the sum over segments, with
support for:
- Batching using the first dimensions [B1, B2, ..., Bn]. Each element in a batch can have different indices.
- Vectorization using the last dimension [V1, V2, ...]. If they are present the output will be a sum of vectors
rather than scalars.
Only the middle dimensions [I1, ..., Ik] are reduced by the operation.
Args:
values: [B1, B2, ..., Bn, I1, .., Ik, V1, V2, ..] tensor of values to be
averaged.
index: IndexMap [B1, B2, ..., Bn, I1, .., Ik] index defining the segments.
name: Name for the TensorFlow ops.
Returns:
A pair (output_values, output_index) where `output_values` is a tensor of shape [B1, B2, ..., Bn, num_segments,
V1, V2, ..] and `index` is an IndexMap with shape [B1, B2, ..., Bn, num_segments].
"""
return _segment_reduce(values, index, tf.math.unsorted_segment_sum, name)
def reduce_max(values, index, name="segmented_reduce_max"):
"""
Computes the maximum over segments. This operations computes the maximum over segments, with support for:
- Batching using the first dimensions [B1, B2, ..., Bn]. Each element in a batch can have different indices.
- Vectorization using the last dimension [V1, V2, ...]. If they are present the output will be an element-wise
maximum of vectors rather than scalars.
Only the middle dimensions [I1, ..., Ik] are reduced by the operation.
Args:
values: [B1, B2, ..., Bn, I1, .., Ik, V1, V2, ..] tensor of values to be
averaged.
index: IndexMap [B1, B2, ..., Bn, I1, .., Ik] index defining the segments.
name: Name for the TensorFlow ops.
Returns:
A pair (output_values, output_index) where `output_values` is a tensor of shape [B1, B2, ..., Bn, num_segments,
V1, V2, ..] and `index` is an IndexMap with shape [B1, B2, ..., Bn, num_segments].
"""
return _segment_reduce(values, index, tf.math.unsorted_segment_max, name)
The provided code snippet includes necessary dependencies for implementing the `_single_column_cell_selection_loss` function. Write a Python function `def _single_column_cell_selection_loss(token_logits, column_logits, labels, cell_index, col_index, cell_mask)` to solve the following problem:
Computes the loss for cell selection constrained to a single column. The loss is a hierarchical log-likelihood. The model first predicts a column and then selects cells within that column (conditioned on the column). Cells outside the selected column are never selected. Args: token_logits (`tf.Tensor` of shape `(batch_size, sequence_length)`): Tensor containing the logits per token. column_logits (`tf.Tensor` of shape `(batch_size, max_num_cols)`): Tensor containing the logits per column. labels (`tf.Tensor` of shape `(batch_size, sequence_length)`): Labels per token. cell_index (`ProductIndexMap`): Index that groups tokens into cells. col_index (`IndexMap`): Index that groups tokens into columns. cell_mask (`tf.Tensor` of shape `(batch_size, max_num_rows * max_num_cols)`): Mask for cells that exist in the table (i.e. that are not padding). Returns: selection_loss_per_example (`tf.Tensor` of shape `(batch_size,)`): Loss for each example. logits (`tf.Tensor` of shape `(batch_size, sequence_length)`): New logits which are only allowed to select cells in a single column. Logits outside of the most likely column according to *column_logits* will be set to a very low value (such that the probabilities are 0).
Here is the function:
def _single_column_cell_selection_loss(token_logits, column_logits, labels, cell_index, col_index, cell_mask):
"""
Computes the loss for cell selection constrained to a single column. The loss is a hierarchical log-likelihood. The
model first predicts a column and then selects cells within that column (conditioned on the column). Cells outside
the selected column are never selected.
Args:
token_logits (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Tensor containing the logits per token.
column_logits (`tf.Tensor` of shape `(batch_size, max_num_cols)`):
Tensor containing the logits per column.
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Labels per token.
cell_index (`ProductIndexMap`):
Index that groups tokens into cells.
col_index (`IndexMap`):
Index that groups tokens into columns.
cell_mask (`tf.Tensor` of shape `(batch_size, max_num_rows * max_num_cols)`):
Mask for cells that exist in the table (i.e. that are not padding).
Returns:
selection_loss_per_example (`tf.Tensor` of shape `(batch_size,)`): Loss for each example. logits (`tf.Tensor`
of shape `(batch_size, sequence_length)`): New logits which are only allowed to select cells in a single
column. Logits outside of the most likely column according to *column_logits* will be set to a very low value
(such that the probabilities are 0).
"""
# First find the column we should select. We use the column with maximum
# number of selected cells.
labels_per_column, _ = reduce_sum(tf.cast(labels, tf.float32), col_index)
column_label = tf.argmax(labels_per_column, axis=-1, output_type=tf.int32)
# Check if there are no selected cells in the column. In that case the model
# should predict the special column id 0, which means "select nothing".
no_cell_selected = tf.equal(tf.reduce_max(labels_per_column, axis=-1), 0)
column_label = tf.where(no_cell_selected, tf.zeros_like(column_label), column_label)
column_dist = tfp.distributions.Categorical(logits=column_logits)
column_loss_per_example = -column_dist.log_prob(column_label)
# Reduce the labels and logits to per-cell from per-token.
logits_per_cell, _ = reduce_mean(token_logits, cell_index)
labels_per_cell, labels_index = reduce_max(tf.cast(labels, tf.int32), cell_index)
# Mask for the selected column.
column_id_for_cells = cell_index.project_inner(labels_index).indices
column_mask = tf.cast(tf.equal(column_id_for_cells, tf.expand_dims(column_label, axis=1)), tf.float32)
# Compute the log-likelihood for cells, but only for the selected column.
cell_dist = tfp.distributions.Bernoulli(logits=logits_per_cell)
cell_log_prob = cell_dist.log_prob(labels_per_cell)
cell_loss = -tf.reduce_sum(cell_log_prob * column_mask * cell_mask, axis=1)
# We need to normalize the loss by the number of cells in the column.
cell_loss /= tf.reduce_sum(column_mask * cell_mask, axis=1) + EPSILON_ZERO_DIVISION
selection_loss_per_example = column_loss_per_example
selection_loss_per_example += tf.where(no_cell_selected, tf.zeros_like(selection_loss_per_example), cell_loss)
# Set the probs outside the selected column (selected by the *model*)
# to 0. This ensures backwards compatibility with models that select
# cells from multiple columns.
selected_column_id = tf.argmax(column_logits, axis=-1, output_type=tf.int32)
selected_column_mask = tf.cast(
tf.equal(column_id_for_cells, tf.expand_dims(selected_column_id, axis=-1)), tf.float32
)
# Never select cells with the special column id 0.
selected_column_mask = tf.where(
tf.equal(column_id_for_cells, 0), tf.zeros_like(selected_column_mask), selected_column_mask
)
logits_per_cell += CLOSE_ENOUGH_TO_LOG_ZERO * (1.0 - cell_mask * selected_column_mask)
logits = gather(logits_per_cell, cell_index)
return selection_loss_per_example, logits | Computes the loss for cell selection constrained to a single column. The loss is a hierarchical log-likelihood. The model first predicts a column and then selects cells within that column (conditioned on the column). Cells outside the selected column are never selected. Args: token_logits (`tf.Tensor` of shape `(batch_size, sequence_length)`): Tensor containing the logits per token. column_logits (`tf.Tensor` of shape `(batch_size, max_num_cols)`): Tensor containing the logits per column. labels (`tf.Tensor` of shape `(batch_size, sequence_length)`): Labels per token. cell_index (`ProductIndexMap`): Index that groups tokens into cells. col_index (`IndexMap`): Index that groups tokens into columns. cell_mask (`tf.Tensor` of shape `(batch_size, max_num_rows * max_num_cols)`): Mask for cells that exist in the table (i.e. that are not padding). Returns: selection_loss_per_example (`tf.Tensor` of shape `(batch_size,)`): Loss for each example. logits (`tf.Tensor` of shape `(batch_size, sequence_length)`): New logits which are only allowed to select cells in a single column. Logits outside of the most likely column according to *column_logits* will be set to a very low value (such that the probabilities are 0). |
11,270 | import enum
import math
from dataclasses import dataclass
from typing import Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPooling,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_tensorflow_probability_available,
logging,
replace_return_docstrings,
requires_backends,
)
from .configuration_tapas import TapasConfig
def reduce_sum(values, index, name="segmented_reduce_sum"):
"""
Sums a tensor over its segments. Outputs 0 for empty segments. This operations computes the sum over segments, with
support for:
- Batching using the first dimensions [B1, B2, ..., Bn]. Each element in a batch can have different indices.
- Vectorization using the last dimension [V1, V2, ...]. If they are present the output will be a sum of vectors
rather than scalars.
Only the middle dimensions [I1, ..., Ik] are reduced by the operation.
Args:
values: [B1, B2, ..., Bn, I1, .., Ik, V1, V2, ..] tensor of values to be
averaged.
index: IndexMap [B1, B2, ..., Bn, I1, .., Ik] index defining the segments.
name: Name for the TensorFlow ops.
Returns:
A pair (output_values, output_index) where `output_values` is a tensor of shape [B1, B2, ..., Bn, num_segments,
V1, V2, ..] and `index` is an IndexMap with shape [B1, B2, ..., Bn, num_segments].
"""
return _segment_reduce(values, index, tf.math.unsorted_segment_sum, name)
The provided code snippet includes necessary dependencies for implementing the `_calculate_aggregate_mask` function. Write a Python function `def _calculate_aggregate_mask(answer, pooled_output, cell_selection_preference, labels, aggregation_classifier)` to solve the following problem:
Finds examples where the model should select cells with no aggregation. Returns a mask that determines for which examples should the model select answers directly from the table, without any aggregation function. If the answer is a piece of text the case is unambiguous as aggregation functions only apply to numbers. If the answer is a number but does not appear in the table then we must use some aggregation case. The ambiguous case is when the answer is a number that also appears in the table. In this case we use the aggregation function probabilities predicted by the model to decide whether to select or aggregate. The threshold for this is a hyperparameter *cell_selection_preference* Args: answer (`tf.Tensor` of shape `(batch_size, )`): Answer for every example in the batch. Nan if there is no scalar answer. pooled_output (`tf.Tensor` of shape `(batch_size, hidden_size)`): Output of the pooler (BertPooler) on top of the encoder layer. cell_selection_preference (`float`): Preference for cell selection in ambiguous cases. labels (`tf.Tensor` of shape `(batch_size, sequence_length)`): Labels per token. aggregation_classifier (`torch.nn.Linear`): Aggregation head Returns: aggregate_mask (`tf.Tensor` of shape `(batch_size,)`): A mask set to 1 for examples that should use aggregation functions.
Here is the function:
def _calculate_aggregate_mask(answer, pooled_output, cell_selection_preference, labels, aggregation_classifier):
"""
Finds examples where the model should select cells with no aggregation.
Returns a mask that determines for which examples should the model select answers directly from the table, without
any aggregation function. If the answer is a piece of text the case is unambiguous as aggregation functions only
apply to numbers. If the answer is a number but does not appear in the table then we must use some aggregation
case. The ambiguous case is when the answer is a number that also appears in the table. In this case we use the
aggregation function probabilities predicted by the model to decide whether to select or aggregate. The threshold
for this is a hyperparameter *cell_selection_preference*
Args:
answer (`tf.Tensor` of shape `(batch_size, )`):
Answer for every example in the batch. Nan if there is no scalar answer.
pooled_output (`tf.Tensor` of shape `(batch_size, hidden_size)`):
Output of the pooler (BertPooler) on top of the encoder layer.
cell_selection_preference (`float`):
Preference for cell selection in ambiguous cases.
labels (`tf.Tensor` of shape `(batch_size, sequence_length)`):
Labels per token. aggregation_classifier (`torch.nn.Linear`): Aggregation head
Returns:
aggregate_mask (`tf.Tensor` of shape `(batch_size,)`): A mask set to 1 for examples that should use aggregation
functions.
"""
# tf.Tensor(batch_size,)
aggregate_mask_init = tf.cast(tf.logical_not(tf.math.is_nan(answer)), tf.float32)
logits_aggregation = aggregation_classifier(pooled_output)
dist_aggregation = tfp.distributions.Categorical(logits=logits_aggregation)
# Index 0 corresponds to "no aggregation".
aggregation_ops_total_mass = tf.reduce_sum(dist_aggregation.probs_parameter()[:, 1:], axis=1)
# Cell selection examples according to current model.
is_pred_cell_selection = aggregation_ops_total_mass <= cell_selection_preference
# Examples with non-empty cell selection supervision.
is_cell_supervision_available = tf.reduce_sum(labels, axis=1) > 0
aggregate_mask = tf.where(
tf.logical_and(is_pred_cell_selection, is_cell_supervision_available),
tf.zeros_like(aggregate_mask_init, dtype=tf.float32),
aggregate_mask_init,
)
aggregate_mask = tf.stop_gradient(aggregate_mask)
return aggregate_mask | Finds examples where the model should select cells with no aggregation. Returns a mask that determines for which examples should the model select answers directly from the table, without any aggregation function. If the answer is a piece of text the case is unambiguous as aggregation functions only apply to numbers. If the answer is a number but does not appear in the table then we must use some aggregation case. The ambiguous case is when the answer is a number that also appears in the table. In this case we use the aggregation function probabilities predicted by the model to decide whether to select or aggregate. The threshold for this is a hyperparameter *cell_selection_preference* Args: answer (`tf.Tensor` of shape `(batch_size, )`): Answer for every example in the batch. Nan if there is no scalar answer. pooled_output (`tf.Tensor` of shape `(batch_size, hidden_size)`): Output of the pooler (BertPooler) on top of the encoder layer. cell_selection_preference (`float`): Preference for cell selection in ambiguous cases. labels (`tf.Tensor` of shape `(batch_size, sequence_length)`): Labels per token. aggregation_classifier (`torch.nn.Linear`): Aggregation head Returns: aggregate_mask (`tf.Tensor` of shape `(batch_size,)`): A mask set to 1 for examples that should use aggregation functions. |
11,271 | import enum
import math
from dataclasses import dataclass
from typing import Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPooling,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_tensorflow_probability_available,
logging,
replace_return_docstrings,
requires_backends,
)
from .configuration_tapas import TapasConfig
def _calculate_aggregation_loss_known(
logits_aggregation, aggregate_mask, aggregation_labels, use_answer_as_supervision, num_aggregation_labels
):
"""
Calculates aggregation loss when its type is known during training.
In the weakly supervised setting, the only known information is that for cell selection examples, "no aggregation"
should be predicted. For other examples (those that require aggregation), no loss is accumulated. In the setting
where aggregation type is always known, standard cross entropy loss is accumulated for all examples
Args:
logits_aggregation (`tf.Tensor` of shape `(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
aggregate_mask (`tf.Tensor` of shape `(batch_size, )`):
A mask set to 1 for examples that should use aggregation functions.
aggregation_labels (`tf.Tensor` of shape `(batch_size, )`):
Aggregation function id for every example in the batch.
use_answer_as_supervision (`bool`, *optional*):
Whether to use the answer as the only supervision for aggregation examples.
num_aggregation_labels (`int`, *optional*, defaults to 0):
The number of aggregation operators to predict.
Returns:
aggregation_loss_known (`tf.Tensor` of shape `(batch_size,)`): Aggregation loss (when its type is known during
training) per example.
"""
if use_answer_as_supervision:
# Prepare "no aggregation" targets for cell selection examples.
target_aggregation = tf.zeros_like(aggregate_mask, dtype=tf.int32)
else:
# Use aggregation supervision as the target.
target_aggregation = aggregation_labels
one_hot_labels = tf.one_hot(target_aggregation, depth=num_aggregation_labels, dtype=tf.float32)
log_probs = tf.nn.log_softmax(logits_aggregation, axis=-1)
# <float32>[batch_size]
per_example_aggregation_intermediate = -tf.reduce_sum(one_hot_labels * log_probs, axis=-1)
if use_answer_as_supervision:
# Accumulate loss only for examples requiring cell selection
# (no aggregation).
return per_example_aggregation_intermediate * (1 - aggregate_mask)
else:
return per_example_aggregation_intermediate
def _calculate_aggregation_loss_unknown(logits_aggregation, aggregate_mask):
"""
Calculates aggregation loss in the case of answer supervision.
Args:
logits_aggregation (`tf.Tensor` of shape `(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
aggregate_mask (`tf.Tensor` of shape `(batch_size, )`):
A mask set to 1 for examples that should use aggregation functions
Returns:
aggregation_loss_unknown (`tf.Tensor` of shape `(batch_size,)`): Aggregation loss (in case of answer
supervision) per example.
"""
dist_aggregation = tfp.distributions.Categorical(logits=logits_aggregation)
# Index 0 corresponds to "no aggregation".
aggregation_ops_total_mass = tf.reduce_sum(dist_aggregation.probs_parameter()[:, 1:], axis=1)
# Predict some aggregation in case of an answer that needs aggregation.
# This increases the probability of all aggregation functions, in a way
# similar to MML, but without considering whether the function gives the
# correct answer.
return -tf.math.log(aggregation_ops_total_mass) * aggregate_mask
The provided code snippet includes necessary dependencies for implementing the `_calculate_aggregation_loss` function. Write a Python function `def _calculate_aggregation_loss( logits_aggregation, aggregate_mask, aggregation_labels, use_answer_as_supervision, num_aggregation_labels, aggregation_loss_weight, )` to solve the following problem:
Calculates the aggregation loss per example. Args: logits_aggregation (`tf.Tensor` of shape `(batch_size, num_aggregation_labels)`): Logits per aggregation operation. aggregate_mask (`tf.Tensor` of shape `(batch_size, )`): A mask set to 1 for examples that should use aggregation functions. aggregation_labels (`tf.Tensor` of shape `(batch_size, )`): Aggregation function id for every example in the batch. use_answer_as_supervision (`bool`, *optional*): Whether to use the answer as the only supervision for aggregation examples. num_aggregation_labels (`int`, *optional*, defaults to 0): The number of aggregation operators to predict. aggregation_loss_weight (`float`, *optional*, defaults to 1.0): Importance weight for the aggregation loss. Returns: aggregation_loss (`tf.Tensor` of shape `(batch_size,)`): Aggregation loss per example.
Here is the function:
def _calculate_aggregation_loss(
logits_aggregation,
aggregate_mask,
aggregation_labels,
use_answer_as_supervision,
num_aggregation_labels,
aggregation_loss_weight,
):
"""
Calculates the aggregation loss per example.
Args:
logits_aggregation (`tf.Tensor` of shape `(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
aggregate_mask (`tf.Tensor` of shape `(batch_size, )`):
A mask set to 1 for examples that should use aggregation functions.
aggregation_labels (`tf.Tensor` of shape `(batch_size, )`):
Aggregation function id for every example in the batch.
use_answer_as_supervision (`bool`, *optional*):
Whether to use the answer as the only supervision for aggregation examples.
num_aggregation_labels (`int`, *optional*, defaults to 0):
The number of aggregation operators to predict.
aggregation_loss_weight (`float`, *optional*, defaults to 1.0):
Importance weight for the aggregation loss.
Returns:
aggregation_loss (`tf.Tensor` of shape `(batch_size,)`): Aggregation loss per example.
"""
per_example_aggregation_loss = _calculate_aggregation_loss_known(
logits_aggregation, aggregate_mask, aggregation_labels, use_answer_as_supervision, num_aggregation_labels
)
if use_answer_as_supervision:
# Add aggregation loss for numeric answers that need aggregation.
per_example_aggregation_loss += _calculate_aggregation_loss_unknown(logits_aggregation, aggregate_mask)
return aggregation_loss_weight * per_example_aggregation_loss | Calculates the aggregation loss per example. Args: logits_aggregation (`tf.Tensor` of shape `(batch_size, num_aggregation_labels)`): Logits per aggregation operation. aggregate_mask (`tf.Tensor` of shape `(batch_size, )`): A mask set to 1 for examples that should use aggregation functions. aggregation_labels (`tf.Tensor` of shape `(batch_size, )`): Aggregation function id for every example in the batch. use_answer_as_supervision (`bool`, *optional*): Whether to use the answer as the only supervision for aggregation examples. num_aggregation_labels (`int`, *optional*, defaults to 0): The number of aggregation operators to predict. aggregation_loss_weight (`float`, *optional*, defaults to 1.0): Importance weight for the aggregation loss. Returns: aggregation_loss (`tf.Tensor` of shape `(batch_size,)`): Aggregation loss per example. |
11,272 | import enum
import math
from dataclasses import dataclass
from typing import Dict, Optional, Tuple, Union
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...modeling_tf_outputs import (
TFBaseModelOutputWithPastAndCrossAttentions,
TFBaseModelOutputWithPooling,
TFMaskedLMOutput,
TFSequenceClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFModelInputType,
TFPreTrainedModel,
TFSequenceClassificationLoss,
get_initializer,
keras_serializable,
unpack_inputs,
)
from ...tf_utils import shape_list, stable_softmax
from ...utils import (
ModelOutput,
add_start_docstrings,
add_start_docstrings_to_model_forward,
is_tensorflow_probability_available,
logging,
replace_return_docstrings,
requires_backends,
)
from .configuration_tapas import TapasConfig
EPSILON_ZERO_DIVISION = 1e-10
def _calculate_expected_result(
dist_per_cell, numeric_values, numeric_values_scale, input_mask_float, logits_aggregation, config
):
"""
Calculates the expected result given cell and aggregation probabilities.
Args:
dist_per_cell (`tfp.distributions.Bernoulli`):
Cell selection distribution for each cell.
numeric_values (`tf.Tensor` of shape `(batch_size, seq_length)`):
Numeric values of every token. Nan for tokens which are not numeric values.
numeric_values_scale (`tf.Tensor` of shape `(batch_size, seq_length)`):
Scale of the numeric values of every token.
input_mask_float (`tf.Tensor` of shape `(batch_size, seq_length)`):
Mask for the table, without question tokens and table headers.
logits_aggregation (`tf.Tensor` of shape `(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
config ([`TapasConfig`]):
Model configuration class with all the hyperparameters of the model
Returns:
expected_result (`tf.Tensor` of shape `(batch_size,)`): The expected result per example.
"""
if config.use_gumbel_for_cells:
gumbel_dist = tfp.distributions.RelaxedBernoulli(
# The token logits where already divided by the temperature and used for
# computing cell selection errors so we need to multiply it again here
config.temperature,
logits=dist_per_cell.logits_parameter() * config.temperature,
)
scaled_probability_per_cell = gumbel_dist.sample()
else:
scaled_probability_per_cell = dist_per_cell.probs_parameter()
# <float32>[batch_size, seq_length]
scaled_probability_per_cell = (scaled_probability_per_cell / numeric_values_scale) * input_mask_float
count_result = tf.reduce_sum(scaled_probability_per_cell, axis=1)
numeric_values_masked = tf.where(
tf.math.is_nan(numeric_values), tf.zeros_like(numeric_values), numeric_values
) # Mask non-numeric table values to zero.
sum_result = tf.reduce_sum(scaled_probability_per_cell * numeric_values_masked, axis=1)
avg_approximation = config.average_approximation_function
if avg_approximation == AverageApproximationFunction.RATIO:
average_result = sum_result / (count_result + EPSILON_ZERO_DIVISION)
elif avg_approximation == AverageApproximationFunction.FIRST_ORDER:
# The sum of all probabilities exept that correspond to other cells
ex = tf.reduce_sum(scaled_probability_per_cell, axis=1, keepdims=True) - scaled_probability_per_cell + 1
average_result = tf.reduce_sum(numeric_values_masked * scaled_probability_per_cell / ex, axis=1)
elif avg_approximation == AverageApproximationFunction.SECOND_ORDER:
# The sum of all probabilities exept that correspond to other cells
ex = tf.reduce_sum(scaled_probability_per_cell, axis=1, keepdims=True) - scaled_probability_per_cell + 1
pointwise_var = scaled_probability_per_cell * (1 - scaled_probability_per_cell)
var = tf.reduce_sum(pointwise_var, axis=1, keepdims=True) - pointwise_var
multiplier = (var / tf.math.square(ex) + 1) / ex
average_result = tf.reduce_sum(numeric_values_masked * scaled_probability_per_cell * multiplier, axis=1)
else:
raise ValueError("Invalid average_approximation_function: %s", config.average_approximation_function)
if config.use_gumbel_for_aggregation:
gumbel_dist = tfp.distributions.RelaxedOneHotCategorical(
config.aggregation_temperature, logits=logits_aggregation[:, 1:]
)
# <float32>[batch_size, num_aggregation_labels - 1]
aggregation_op_only_probs = gumbel_dist.sample()
else:
# <float32>[batch_size, num_aggregation_labels - 1]
aggregation_op_only_probs = stable_softmax(logits_aggregation[:, 1:] / config.aggregation_temperature, axis=-1)
all_results = tf.concat(
[
tf.expand_dims(sum_result, axis=1),
tf.expand_dims(average_result, axis=1),
tf.expand_dims(count_result, axis=1),
],
axis=1,
)
expected_result = tf.reduce_sum(all_results * aggregation_op_only_probs, axis=1)
return expected_result
The provided code snippet includes necessary dependencies for implementing the `_calculate_regression_loss` function. Write a Python function `def _calculate_regression_loss( answer, aggregate_mask, dist_per_cell, numeric_values, numeric_values_scale, input_mask_float, logits_aggregation, config, )` to solve the following problem:
Calculates the regression loss per example. Args: answer (`tf.Tensor` of shape `(batch_size,)`): Answer for every example in the batch. Nan if there is no scalar answer. aggregate_mask (`tf.Tensor` of shape `(batch_size,)`): A mask set to 1 for examples that should use aggregation functions. dist_per_cell (`torch.distributions.Bernoulli`): Cell selection distribution for each cell. numeric_values (`tf.Tensor` of shape `(batch_size, seq_length)`): Numeric values of every token. Nan for tokens which are not numeric values. numeric_values_scale (`tf.Tensor` of shape `(batch_size, seq_length)`): Scale of the numeric values of every token. input_mask_float (`tf.Tensor` of shape `(batch_size, seq_length)`): Mask for the table, without question tokens and table headers. logits_aggregation (`tf.Tensor` of shape `(batch_size, num_aggregation_labels)`): Logits per aggregation operation. config ([`TapasConfig`]): Model configuration class with all the parameters of the model Returns: per_example_answer_loss_scaled (`tf.Tensor` of shape `(batch_size,)`): Scales answer loss for each example in the batch. large_answer_loss_mask (`tf.Tensor` of shape `(batch_size,)`): A mask which is 1 for examples for which their answer loss is larger than the answer_loss_cutoff.
Here is the function:
def _calculate_regression_loss(
answer,
aggregate_mask,
dist_per_cell,
numeric_values,
numeric_values_scale,
input_mask_float,
logits_aggregation,
config,
):
"""
Calculates the regression loss per example.
Args:
answer (`tf.Tensor` of shape `(batch_size,)`):
Answer for every example in the batch. Nan if there is no scalar answer.
aggregate_mask (`tf.Tensor` of shape `(batch_size,)`):
A mask set to 1 for examples that should use aggregation functions.
dist_per_cell (`torch.distributions.Bernoulli`):
Cell selection distribution for each cell.
numeric_values (`tf.Tensor` of shape `(batch_size, seq_length)`):
Numeric values of every token. Nan for tokens which are not numeric values.
numeric_values_scale (`tf.Tensor` of shape `(batch_size, seq_length)`):
Scale of the numeric values of every token.
input_mask_float (`tf.Tensor` of shape `(batch_size, seq_length)`):
Mask for the table, without question tokens and table headers.
logits_aggregation (`tf.Tensor` of shape `(batch_size, num_aggregation_labels)`):
Logits per aggregation operation.
config ([`TapasConfig`]):
Model configuration class with all the parameters of the model
Returns:
per_example_answer_loss_scaled (`tf.Tensor` of shape `(batch_size,)`): Scales answer loss for each example in
the batch. large_answer_loss_mask (`tf.Tensor` of shape `(batch_size,)`): A mask which is 1 for examples for
which their answer loss is larger than the answer_loss_cutoff.
"""
# float32 (batch_size,)
expected_result = _calculate_expected_result(
dist_per_cell, numeric_values, numeric_values_scale, input_mask_float, logits_aggregation, config
)
# <float32>[batch_size]
answer_masked = tf.where(tf.math.is_nan(answer), tf.zeros_like(answer), answer)
if config.use_normalized_answer_loss:
normalizer = tf.stop_gradient(
tf.math.maximum(tf.math.abs(expected_result), tf.math.abs(answer_masked)) + EPSILON_ZERO_DIVISION
)
normalized_answer_masked = answer_masked / normalizer
normalized_expected_result = expected_result / normalizer
per_example_answer_loss = tf.compat.v1.losses.huber_loss(
normalized_answer_masked * aggregate_mask,
normalized_expected_result * aggregate_mask,
delta=tf.cast(1.0, tf.float32),
reduction=tf.losses.Reduction.NONE,
)
else:
per_example_answer_loss = tf.compat.v1.losses.huber_loss(
answer_masked * aggregate_mask,
expected_result * aggregate_mask,
delta=tf.cast(config.huber_loss_delta, tf.float32),
reduction=tf.losses.Reduction.NONE,
)
if config.answer_loss_cutoff is None:
large_answer_loss_mask = tf.ones_like(per_example_answer_loss, dtype=tf.float32)
else:
large_answer_loss_mask = tf.where(
per_example_answer_loss > config.answer_loss_cutoff,
tf.zeros_like(per_example_answer_loss, dtype=tf.float32),
tf.ones_like(per_example_answer_loss, dtype=tf.float32),
)
per_example_answer_loss_scaled = config.answer_loss_importance * (per_example_answer_loss * aggregate_mask)
return per_example_answer_loss_scaled, large_answer_loss_mask | Calculates the regression loss per example. Args: answer (`tf.Tensor` of shape `(batch_size,)`): Answer for every example in the batch. Nan if there is no scalar answer. aggregate_mask (`tf.Tensor` of shape `(batch_size,)`): A mask set to 1 for examples that should use aggregation functions. dist_per_cell (`torch.distributions.Bernoulli`): Cell selection distribution for each cell. numeric_values (`tf.Tensor` of shape `(batch_size, seq_length)`): Numeric values of every token. Nan for tokens which are not numeric values. numeric_values_scale (`tf.Tensor` of shape `(batch_size, seq_length)`): Scale of the numeric values of every token. input_mask_float (`tf.Tensor` of shape `(batch_size, seq_length)`): Mask for the table, without question tokens and table headers. logits_aggregation (`tf.Tensor` of shape `(batch_size, num_aggregation_labels)`): Logits per aggregation operation. config ([`TapasConfig`]): Model configuration class with all the parameters of the model Returns: per_example_answer_loss_scaled (`tf.Tensor` of shape `(batch_size,)`): Scales answer loss for each example in the batch. large_answer_loss_mask (`tf.Tensor` of shape `(batch_size,)`): A mask which is 1 for examples for which their answer loss is larger than the answer_loss_cutoff. |
11,273 | import collections
import datetime
import enum
import itertools
import math
import os
import re
import unicodedata
from dataclasses import dataclass
from typing import Callable, Dict, Generator, List, Optional, Text, Tuple, Union
import numpy as np
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
)
from ...utils import ExplicitEnum, PaddingStrategy, TensorType, add_end_docstrings, is_pandas_available, logging
def _is_inner_wordpiece(token: Text):
return token.startswith("##") | null |
11,274 | import collections
import datetime
import enum
import itertools
import math
import os
import re
import unicodedata
from dataclasses import dataclass
from typing import Callable, Dict, Generator, List, Optional, Text, Tuple, Union
import numpy as np
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
)
from ...utils import ExplicitEnum, PaddingStrategy, TensorType, add_end_docstrings, is_pandas_available, logging
The provided code snippet includes necessary dependencies for implementing the `load_vocab` function. Write a Python function `def load_vocab(vocab_file)` to solve the following problem:
Loads a vocabulary file into a dictionary.
Here is the function:
def load_vocab(vocab_file):
"""Loads a vocabulary file into a dictionary."""
vocab = collections.OrderedDict()
with open(vocab_file, "r", encoding="utf-8") as reader:
tokens = reader.readlines()
for index, token in enumerate(tokens):
token = token.rstrip("\n")
vocab[token] = index
return vocab | Loads a vocabulary file into a dictionary. |
11,275 | import collections
import datetime
import enum
import itertools
import math
import os
import re
import unicodedata
from dataclasses import dataclass
from typing import Callable, Dict, Generator, List, Optional, Text, Tuple, Union
import numpy as np
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
)
from ...utils import ExplicitEnum, PaddingStrategy, TensorType, add_end_docstrings, is_pandas_available, logging
The provided code snippet includes necessary dependencies for implementing the `whitespace_tokenize` function. Write a Python function `def whitespace_tokenize(text)` to solve the following problem:
Runs basic whitespace cleaning and splitting on a piece of text.
Here is the function:
def whitespace_tokenize(text):
"""Runs basic whitespace cleaning and splitting on a piece of text."""
text = text.strip()
if not text:
return []
tokens = text.split()
return tokens | Runs basic whitespace cleaning and splitting on a piece of text. |
11,276 | import collections
import datetime
import enum
import itertools
import math
import os
import re
import unicodedata
from dataclasses import dataclass
from typing import Callable, Dict, Generator, List, Optional, Text, Tuple, Union
import numpy as np
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
)
from ...utils import ExplicitEnum, PaddingStrategy, TensorType, add_end_docstrings, is_pandas_available, logging
_DATE_PATTERNS = (
("%B", _MONTH),
("%Y", _YEAR),
("%Ys", _YEAR),
("%b %Y", _YEAR_MONTH),
("%B %Y", _YEAR_MONTH),
("%B %d", _MONTH_DAY),
("%b %d", _MONTH_DAY),
("%d %b", _MONTH_DAY),
("%d %B", _MONTH_DAY),
("%B %d, %Y", _YEAR_MONTH_DAY),
("%d %B %Y", _YEAR_MONTH_DAY),
("%m-%d-%Y", _YEAR_MONTH_DAY),
("%Y-%m-%d", _YEAR_MONTH_DAY),
("%Y-%m", _YEAR_MONTH),
("%B %Y", _YEAR_MONTH),
("%d %b %Y", _YEAR_MONTH_DAY),
("%Y-%m-%d", _YEAR_MONTH_DAY),
("%b %d, %Y", _YEAR_MONTH_DAY),
("%d.%m.%Y", _YEAR_MONTH_DAY),
("%A, %b %d", _MONTH_DAY),
("%A, %B %d", _MONTH_DAY),
)
def _process_date_pattern(dp):
def _process_date_patterns():
return tuple(_process_date_pattern(dp) for dp in _DATE_PATTERNS) | null |
11,277 | import collections
import datetime
import enum
import itertools
import math
import os
import re
import unicodedata
from dataclasses import dataclass
from typing import Callable, Dict, Generator, List, Optional, Text, Tuple, Union
import numpy as np
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
)
from ...utils import ExplicitEnum, PaddingStrategy, TensorType, add_end_docstrings, is_pandas_available, logging
EMPTY_TEXT = "EMPTY"
The provided code snippet includes necessary dependencies for implementing the `format_text` function. Write a Python function `def format_text(text)` to solve the following problem:
Lowercases and strips punctuation.
Here is the function:
def format_text(text):
"""Lowercases and strips punctuation."""
text = text.lower().strip()
if text == "n/a" or text == "?" or text == "nan":
text = EMPTY_TEXT
text = re.sub(r"[^\w\d]+", " ", text).replace("_", " ")
text = " ".join(text.split())
text = text.strip()
if text:
return text
return EMPTY_TEXT | Lowercases and strips punctuation. |
11,278 | import collections
import datetime
import enum
import itertools
import math
import os
import re
import unicodedata
from dataclasses import dataclass
from typing import Callable, Dict, Generator, List, Optional, Text, Tuple, Union
import numpy as np
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
)
from ...utils import ExplicitEnum, PaddingStrategy, TensorType, add_end_docstrings, is_pandas_available, logging
_DATE_TUPLE_SIZE = 3
NUMBER_TYPE = "number"
def _get_value_as_primitive_value(numeric_value):
"""Maps a NumericValue proto to a float or tuple of float."""
if numeric_value.float_value is not None:
return numeric_value.float_value
if numeric_value.date is not None:
date = numeric_value.date
value_tuple = [None, None, None]
# All dates fields are cased to float to produce a simple primitive value.
if date.year is not None:
value_tuple[0] = float(date.year)
if date.month is not None:
value_tuple[1] = float(date.month)
if date.day is not None:
value_tuple[2] = float(date.day)
return tuple(value_tuple)
raise ValueError(f"Unknown type: {numeric_value}")
def _get_all_types(numeric_values):
return {_get_value_type(value) for value in numeric_values}
The provided code snippet includes necessary dependencies for implementing the `get_numeric_sort_key_fn` function. Write a Python function `def get_numeric_sort_key_fn(numeric_values)` to solve the following problem:
Creates a function that can be used as a sort key or to compare the values. Maps to primitive types and finds the biggest common subset. Consider the values "05/05/2010" and "August 2007". With the corresponding primitive values (2010.,5.,5.) and (2007.,8., None). These values can be compared by year and date so we map to the sequence (2010., 5.), (2007., 8.). If we added a third value "2006" with primitive value (2006., None, None), we could only compare by the year so we would map to (2010.,), (2007.,) and (2006.,). Args: numeric_values: Values to compare Returns: A function that can be used as a sort key function (mapping numeric values to a comparable tuple) Raises: ValueError if values don't have a common type or are not comparable.
Here is the function:
def get_numeric_sort_key_fn(numeric_values):
"""
Creates a function that can be used as a sort key or to compare the values. Maps to primitive types and finds the
biggest common subset. Consider the values "05/05/2010" and "August 2007". With the corresponding primitive values
(2010.,5.,5.) and (2007.,8., None). These values can be compared by year and date so we map to the sequence (2010.,
5.), (2007., 8.). If we added a third value "2006" with primitive value (2006., None, None), we could only compare
by the year so we would map to (2010.,), (2007.,) and (2006.,).
Args:
numeric_values: Values to compare
Returns:
A function that can be used as a sort key function (mapping numeric values to a comparable tuple)
Raises:
ValueError if values don't have a common type or are not comparable.
"""
value_types = _get_all_types(numeric_values)
if len(value_types) != 1:
raise ValueError(f"No common value type in {numeric_values}")
value_type = next(iter(value_types))
if value_type == NUMBER_TYPE:
# Primitive values are simple floats, nothing to do here.
return _get_value_as_primitive_value
# The type can only be Date at this point which means the primitive type
# is a float triple.
valid_indexes = set(range(_DATE_TUPLE_SIZE))
for numeric_value in numeric_values:
value = _get_value_as_primitive_value(numeric_value)
assert isinstance(value, tuple)
for tuple_index, inner_value in enumerate(value):
if inner_value is None:
valid_indexes.discard(tuple_index)
if not valid_indexes:
raise ValueError(f"No common value in {numeric_values}")
def _sort_key_fn(numeric_value):
value = _get_value_as_primitive_value(numeric_value)
return tuple(value[index] for index in valid_indexes)
return _sort_key_fn | Creates a function that can be used as a sort key or to compare the values. Maps to primitive types and finds the biggest common subset. Consider the values "05/05/2010" and "August 2007". With the corresponding primitive values (2010.,5.,5.) and (2007.,8., None). These values can be compared by year and date so we map to the sequence (2010., 5.), (2007., 8.). If we added a third value "2006" with primitive value (2006., None, None), we could only compare by the year so we would map to (2010.,), (2007.,) and (2006.,). Args: numeric_values: Values to compare Returns: A function that can be used as a sort key function (mapping numeric values to a comparable tuple) Raises: ValueError if values don't have a common type or are not comparable. |
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