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avantikalal
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- README.md +50 -3
- variants.csv +0 -0
README.md
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---
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# 1. Metadata Block
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license: mit
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task_categories:
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- tabular-regression
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tags:
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- biology
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- genomics
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pretty_name: "Alzheimer's GWAS variants (hg19)"
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size_categories:
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- 1K<n<10K
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# 2. Config & Split Management
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configs:
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- config_name: default
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data_files:
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- split: test
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path: "variants.csv"
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---
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# alzheimer's-variant-tutorial-data
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## Dataset Summary
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This dataset contains summary statistics for 1,000 genomic variants. Each row represents a single-nucleotide polymorphism (SNP) mapped to the hg19 reference genome.
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## Dataset Structure
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### Data Fields
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Based on the header of `variants.csv`:
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| Column | Type | Description |
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| :--- | :--- | :--- |
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| `snpid` | string | Unique identifier in `chr:pos_ref_alt` format |
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| `chrom` | string | Chromosome (e.g., `chr6`) |
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| `pos` | int | Genomic position (hg19) |
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| `alt` | string | Alternate allele (effect allele) |
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| `ref` | string | Reference allele (non-effect allele) |
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| `rsid` | string | Reference SNP cluster ID |
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| `pval` | float | P-value of the association |
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| `beta` | float | Regression coefficient (effect size) |
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| `se` | float | Standard error of the beta |
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## Usage
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```python
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from datasets import load_dataset
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dataset = load_dataset("Genentech/alzheimer's-variant-tutorial-data", split="test")
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df = dataset.to_pandas()
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print(df.head())
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```
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variants.csv
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