Datasets:
chrom string | pos int64 | ref string | alt string | label int64 | CADD float64 | phyloP-100v float64 | phyloP-241m float64 | phastCons-100v float64 | GPN-MSA float32 | NT float64 | NT-v2 float64 | HyenaDNA float32 | Evo2-1B-Base float64 | Evo2-7B-Base float64 | Evo2-7B float64 | GENERator-1B float64 | GENERator-3B float64 | GENERator-v2-1B float64 | GENERator-v2-3B float64 | type string | refseq_id string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | 69,511 | A | G | 0 | 0.112916 | -0.684 | 3.29 | 0 | -1.493164 | 1.114483 | 1.393293 | -0.000001 | 0.880025 | 0.950002 | 0.6856 | -2.103734 | -4.694194 | -2.464122 | -4.204434 | coding | NC_000001.11 |
1 | 953,279 | T | C | 0 | 0.266107 | 0.037 | 1.27 | 0.009 | -2.578125 | 0.166788 | 0.219609 | -0.000001 | -2.346362 | -3.023306 | -2.641877 | -3.418499 | -3.57321 | -2.806085 | -1.923287 | coding | NC_000001.11 |
1 | 973,858 | G | C | 0 | 0.787153 | -0.431 | 0.835 | 0 | -1.5625 | -1.379893 | -1.074971 | -0.000001 | -1.541645 | -1.217578 | -3.185022 | -1.987618 | -1.342503 | -2.81057 | -2.21972 | coding | NC_000001.11 |
1 | 973,929 | T | C | 0 | 0.818047 | 0.076 | -0.539 | 0.001 | 1.328125 | -0.677588 | -0.765484 | -0.000001 | -1.107392 | 0.307195 | 1.350848 | -0.881725 | 1.589459 | -0.955807 | 1.935213 | coding | NC_000001.11 |
1 | 978,953 | C | G | 0 | -0.096301 | -0.22 | -0.223 | 0 | -1.72168 | 0.446843 | 0.627828 | -0.000002 | 0.078472 | -0.196052 | -0.287682 | 0.062324 | -0.664016 | 0.241698 | -3.027441 | coding | NC_000001.11 |
1 | 999,842 | C | A | 0 | 0.472275 | -0.582 | -1.508 | 0 | 1.387695 | 1.354812 | 1.603472 | -0.000004 | 1.489673 | 1.673976 | 1.522335 | 1.476742 | 1.761477 | 1.460643 | 0.940305 | coding | NC_000001.11 |
1 | 1,014,228 | G | A | 0 | 0.027262 | -0.396 | -0.787 | 0 | 2.003906 | -0.472813 | -0.487897 | -0.000001 | 0.160815 | 2.561068 | 1.158812 | 0.759813 | 2.307257 | 0.998826 | 2.711137 | coding | NC_000001.11 |
1 | 1,050,449 | G | A | 1 | 3.882619 | 5.271 | 6.861 | 1 | 3.966797 | -0.733227 | -0.039148 | -0.000003 | -0.741349 | 2.562749 | 2.739391 | 3.369399 | 3.440092 | 3.182607 | 4.26941 | coding | NC_000001.11 |
1 | 1,050,575 | G | C | 1 | 4.095325 | 9.276 | 8.514 | 1 | 10.625 | 0.442092 | 1.119294 | -0.000002 | 8.492306 | 8.088392 | 8.257142 | 7.096515 | 8.412561 | 4.549466 | 8.495306 | coding | NC_000001.11 |
1 | 1,072,052 | G | A | 0 | -0.862209 | -1.398 | -4.07 | 0 | 0.551758 | -0.007159 | 0.200124 | -0 | 1.638349 | 1.314835 | 1.386294 | -0.009253 | 0.616521 | 0.53203 | 1.242721 | coding | NC_000001.11 |
1 | 1,179,288 | G | A | 0 | 0.167083 | -0.447 | 0.13 | 0 | -0.321289 | -0.599402 | -0.284872 | 0 | 0.16093 | -0.04256 | 0.020907 | 0.214205 | 0.211111 | 0.144926 | 0.124804 | coding | NC_000001.11 |
1 | 1,180,851 | T | C | 0 | 0.21429 | 0.026 | 1.845 | 0 | -1.851563 | -0.915809 | -0.853654 | 0.000001 | -1.408767 | -0.865447 | -1.406634 | -1.125332 | -3.128235 | -1.335678 | -3.132108 | coding | NC_000001.11 |
1 | 1,197,558 | G | A | 0 | 1.409054 | 1.648 | 0.167 | 0.014 | 2.478516 | -0.064281 | -0.298453 | 0.000001 | 0.428551 | 3.288478 | 3.682407 | 0.474602 | 1.945681 | -0.099565 | 1.932765 | coding | NC_000001.11 |
1 | 1,211,863 | A | C | 0 | 0.136844 | -0.141 | 0.007 | 0.002 | 1.439453 | -0.460566 | -0.38898 | 0.000002 | -1.014731 | -1.067841 | -0.896195 | -0.971562 | -0.303629 | -0.809525 | 0.542157 | non-coding | NC_000001.11 |
1 | 1,211,917 | G | A | 0 | 0.013032 | -0.135 | -0.028 | 0 | 0.191895 | -1.116793 | -0.814173 | -0.000001 | -0.699881 | -0.604482 | -0.927085 | -0.826131 | -0.915854 | -0.9316 | -0.957773 | non-coding | NC_000001.11 |
1 | 1,212,042 | C | T | 0 | 0.52087 | 0.003 | 3.889 | 0.003 | 3.046875 | 1.02012 | 1.33845 | -0.000001 | 1.427116 | 0.730652 | 3.16166 | 2.909132 | 4.036382 | 3.244247 | 4.506484 | coding | NC_000001.11 |
1 | 1,212,898 | C | T | 0 | 0.438368 | -0.235 | -4.258 | 0 | 0.602051 | 0.936681 | 0.967339 | 0.000001 | 0.297712 | 0.877394 | 0.807856 | 0.86279 | 0.877727 | 0.798471 | 0.240011 | coding | NC_000001.11 |
1 | 1,213,738 | G | A | 1 | 1.622702 | -0.097 | 0.521 | 0 | 2.636719 | -3.576933 | -2.776128 | 0.000001 | 3.098466 | 3.235948 | 1.68614 | 3.865761 | 6.660776 | 2.943845 | 5.550689 | coding | NC_000001.11 |
1 | 1,232,279 | A | G | 1 | 2.298613 | 2.027 | 1.886 | 0.925 | 6.527344 | 2.614562 | 2.104847 | 0.000003 | -1.082471 | -1.225142 | -0.329958 | -0.953621 | -1.213547 | -1.04675 | -1.150101 | coding | NC_000001.11 |
1 | 1,232,280 | T | C | 1 | 2.745302 | 1.175 | 3.189 | 0.99 | 7.273438 | 2.78751 | 4.249384 | 0.000002 | 0.654265 | 0.137923 | 1.271364 | -0.233806 | -0.259463 | -0.287814 | -0.97533 | coding | NC_000001.11 |
1 | 1,232,281 | G | A | 1 | 2.91592 | 4.788 | 7.944 | 1 | 7.144531 | 6.083667 | 6.599987 | -0.000003 | 2.676023 | 2.510659 | 2.578125 | 2.195054 | 3.361338 | 2.216887 | 3.114417 | coding | NC_000001.11 |
1 | 1,232,471 | A | G | 1 | 2.945049 | 2.086 | -0.069 | 0.997 | 4.976563 | -1.568574 | -1.251037 | 0.000004 | 5.657095 | 3.871201 | 3.429072 | 3.775857 | 6.414816 | 3.356358 | 7.749705 | coding | NC_000001.11 |
1 | 1,232,478 | C | T | 1 | 3.931606 | 2.033 | 7.798 | 0.993 | 5.175781 | 0.254544 | 0.152965 | -0 | 5.316516 | 7.922772 | 8.249816 | 3.418605 | 7.465944 | 4.013833 | 7.62579 | coding | NC_000001.11 |
1 | 1,232,744 | G | A | 1 | 4.68026 | 7.4 | 5.604 | 1 | 9.640625 | 2.147749 | 4.378703 | -0.000002 | 9.014827 | 8.530225 | 8.309984 | 9.353022 | 10.385287 | 10.022073 | 9.440873 | coding | NC_000001.11 |
1 | 1,232,754 | C | A | 1 | 4.121125 | 4.766 | 4.804 | 1 | 9.523438 | -0.403674 | -0.090313 | -0.000001 | 9.986548 | 8.469316 | 8.699974 | 11.897447 | 11.05778 | 10.714781 | 10.995625 | coding | NC_000001.11 |
1 | 1,232,800 | G | C | 0 | 0.830179 | 0.466 | -1.097 | 0.998 | 1.115234 | -0.241392 | 0.299638 | -0 | 1.406295 | -2.435487 | -1.053691 | 0.93186 | -2.061333 | 1.628216 | -3.510462 | coding | NC_000001.11 |
1 | 1,232,834 | T | C | 1 | 4.516843 | 3.777 | 3.569 | 1 | 7.078125 | -0.674929 | 0.049767 | 0.000001 | 6.06256 | 5.402861 | 6.250159 | 8.332425 | 7.455811 | 6.487652 | 8.123814 | coding | NC_000001.11 |
1 | 1,232,896 | C | G | 1 | 3.667146 | -0.325 | -0.168 | 0.335 | 7.371094 | 1.320354 | 0.124077 | 0.000001 | 9.68806 | 8.844184 | 9.379564 | 10.067963 | 7.391196 | 9.33345 | 9.149853 | coding | NC_000001.11 |
1 | 1,232,897 | G | C | 1 | 4.542989 | 6.691 | 8.625 | 1 | 9.765625 | 0.316534 | 0.226401 | 0.000001 | 6.385961 | 6.710684 | 6.816744 | 11.117711 | 4.073869 | 11.577244 | 5.198335 | coding | NC_000001.11 |
1 | 1,232,927 | G | A | 1 | 4.493109 | 6.663 | 8.626 | 1 | 8.359375 | 1.302583 | 1.397952 | 0 | 9.257773 | 8.369882 | 8.32168 | 7.877469 | 11.644156 | 7.907762 | 10.817743 | coding | NC_000001.11 |
1 | 1,233,044 | C | T | 1 | 4.400743 | 2.068 | 8.797 | 1 | 8.429688 | 0.71 | 1.273353 | -0.000002 | 7.125057 | 8.12361 | 7.704662 | 9.994604 | 7.865199 | 9.516722 | 8.477415 | coding | NC_000001.11 |
1 | 1,233,177 | G | C | 1 | 4.25814 | 5.541 | 6.948 | 1 | 7.246094 | 0.185643 | 0.282621 | 0.000001 | 8.733045 | 8.942963 | 8.775347 | 10.721902 | 10.372193 | 10.407218 | 10.594989 | coding | NC_000001.11 |
1 | 1,233,203 | T | A | 1 | 3.938952 | 5.873 | 4.681 | 1 | 8.8125 | 0.100668 | 0.435977 | 0.000001 | 4.407123 | 4.80202 | 4.494529 | 7.855516 | 7.722699 | 7.185287 | 7.938614 | coding | NC_000001.11 |
1 | 1,243,102 | A | G | 0 | 1.275063 | 2.096 | 5.327 | 0.99 | -5.085938 | -0.512447 | -0.124545 | -0.000002 | -5.207581 | -5.412631 | -6.486283 | -4.064004 | -4.452543 | -3.456889 | -3.791168 | coding | NC_000001.11 |
1 | 1,243,545 | G | A | 0 | 2.557367 | 7.839 | 6.608 | 1 | 7.59375 | -0.030878 | 0.005286 | -0.000002 | 5.087102 | 3.835269 | 3.449607 | 5.045162 | 4.009425 | 4.313853 | 5.113281 | coding | NC_000001.11 |
1 | 1,264,812 | C | G | 0 | 1.274881 | -0.188 | -0.183 | 0.719 | -4.078125 | -5.620465 | -5.10713 | 0.000004 | -4.899762 | -4.480617 | -4.726867 | -5.073435 | -5.118485 | -5.172367 | -4.914754 | coding | NC_000001.11 |
1 | 1,285,621 | A | G | 0 | 1.028294 | -1.673 | -0.04 | 0 | 1.320313 | 1.147077 | 0.891267 | -0.000001 | 0.599462 | 0.5047 | 0.572735 | 0.759434 | 0.647841 | 0.734202 | 0.822034 | coding | NC_000001.11 |
1 | 1,288,005 | G | C | 0 | 0.149565 | -0.07 | 3.204 | 0 | -3.164063 | -0.018501 | -0.284359 | 0 | -0.138358 | -0.988611 | -0.805065 | -1.396239 | 0.349527 | -2.297181 | 0.366534 | coding | NC_000001.11 |
1 | 1,291,377 | G | A | 0 | 0.44613 | -0.087 | 1.21 | 0 | -0.023026 | -0.327314 | -0.069913 | 0.000001 | -0.994252 | 0.949577 | 0.399034 | 0.080654 | 0.441156 | 0.570996 | 1.053593 | coding | NC_000001.11 |
1 | 1,291,509 | G | A | 0 | -0.265035 | -2.719 | -4.19 | 0 | -0.664063 | -0.350508 | -0.493889 | 0.000002 | -0.24153 | -0.23742 | -0.376892 | 0.081842 | 0.195433 | 0.108177 | 0.27041 | coding | NC_000001.11 |
1 | 1,312,290 | C | T | 1 | 3.357409 | 4.362 | 6.917 | 1 | 5.15625 | 0.825046 | 1.394128 | -0.000003 | 6.586631 | 4.477839 | 4.063208 | 5.164829 | 7.501661 | 5.188582 | 7.713781 | coding | NC_000001.11 |
1 | 1,312,841 | G | A | 1 | 3.542766 | 8.924 | 6.83 | 1 | 7.707031 | -0.448924 | -0.461589 | -0.000001 | 6.908124 | 8.664447 | 8.279447 | 6.872846 | 8.371835 | 8.306841 | 8.752136 | coding | NC_000001.11 |
1 | 1,319,063 | G | A | 0 | -0.448394 | -2.002 | -0.861 | 0 | 0.026367 | -0.890529 | -1.033995 | -0 | -0.978653 | -1.342944 | -1.399993 | -1.271198 | -1.183078 | -1.294907 | -1.142682 | non-coding | NC_000001.11 |
1 | 1,319,313 | G | A | 1 | 3.038115 | 5.687 | 5.669 | 1 | 6.453125 | -1.08997 | -0.566105 | -0.000002 | 0.483856 | 8.279447 | 7.96031 | 9.053868 | 6.297344 | 9.460393 | 7.595786 | coding | NC_000001.11 |
1 | 1,320,493 | C | T | 1 | 2.847095 | 7.635 | 8.743 | 1 | 7.183594 | 0.449967 | 0.386436 | 0.000002 | 7.096752 | 5.866085 | 6.181166 | 6.468287 | 7.497093 | 6.325383 | 7.595631 | coding | NC_000001.11 |
1 | 1,321,072 | C | A | 1 | 4.400157 | 7.661 | 8.745 | 1 | 13.140625 | 0.901826 | 1.546521 | 0.000002 | 9.704061 | 9.426192 | 8.907117 | 12.482918 | 12.498029 | 11.469368 | 14.537199 | coding | NC_000001.11 |
1 | 1,332,271 | G | A | 0 | -0.611933 | -2.457 | -4.275 | 0 | 0.956543 | -0.347125 | 0.333813 | -0.000001 | 0.412845 | -0.956438 | -1.33309 | 0.288829 | 0.398478 | -0.575478 | 1.136124 | coding | NC_000001.11 |
1 | 1,334,108 | G | A | 0 | 0.004351 | 0.198 | -1.406 | 0 | 0.147461 | 0.245661 | 0.639152 | 0 | 0.94642 | 1.773067 | 1.853537 | 2.281472 | 2.323771 | 2.180348 | 2.989002 | coding | NC_000001.11 |
1 | 1,420,203 | C | A | 0 | 2.239272 | -1.246 | 0.527 | 0 | 1.3125 | 5.897786 | 6.493897 | 0 | 3.472208 | 5.874359 | 5.346049 | 5.772686 | 5.715295 | 5.844466 | 5.060192 | coding | NC_000001.11 |
1 | 1,426,261 | C | T | 0 | 0.466194 | -0.724 | 0.952 | 0 | -1.09375 | 0.458846 | 0.131728 | -0.000002 | -0.273889 | 0.338024 | 0.341303 | -0.071215 | 0.116793 | -0.205806 | -0.01767 | coding | NC_000001.11 |
1 | 1,452,384 | G | A | 0 | 4.322648 | 8.17 | 8.528 | 1 | 4.957031 | 0.778354 | 1.76455 | -0.000001 | 1.575361 | 0.831984 | 0.887541 | 1.371539 | 1.073312 | 1.215709 | 0.664846 | coding | NC_000001.11 |
1 | 1,495,605 | C | T | 0 | 0.735766 | -0.688 | -0.039 | 0 | 1.003906 | 1.712257 | 1.394565 | 0.000004 | 1.548207 | -1.411871 | -2.78961 | 3.410594 | 3.454452 | 3.274155 | 3.480411 | coding | NC_000001.11 |
1 | 1,512,312 | G | A | 0 | 2.55411 | 3.349 | 8.396 | 0.999 | 5.585938 | 0.11172 | 1.031308 | -0.000001 | 2.35595 | 5.142383 | 4.767037 | 5.40859 | 4.993903 | 5.457211 | 5.280863 | coding | NC_000001.11 |
1 | 1,516,036 | T | G | 1 | 3.368562 | 6.341 | 6.275 | 0.992 | 8.304688 | 0.381042 | -0.157784 | -0.000003 | 1.677646 | 7.140017 | 8.033998 | 7.826275 | 8.899448 | 6.730504 | 8.666338 | coding | NC_000001.11 |
1 | 1,517,186 | G | A | 0 | 0.71163 | 1.385 | 2.202 | 0.011 | 1.466797 | 1.941974 | 1.774432 | -0.000002 | 1.571561 | 1.588663 | 1.518752 | -2.733496 | -2.925762 | -2.848479 | -2.858245 | coding | NC_000001.11 |
1 | 1,525,242 | T | G | 1 | 3.512934 | 6.29 | 6.135 | 1 | 10.109375 | -1.569041 | -0.19958 | -0.000003 | 0.940007 | 3.733331 | 5.013601 | 6.771811 | 6.223802 | 6.593787 | 6.826197 | coding | NC_000001.11 |
1 | 1,535,616 | G | A | 1 | 4.118985 | 2.772 | 6.783 | 1 | 8.273438 | 0.493152 | 0.674624 | 0.000001 | 1.61548 | 6.885662 | 6.522093 | 3.698006 | 8.68541 | 3.695288 | 8.149363 | coding | NC_000001.11 |
1 | 1,535,723 | G | A | 1 | 3.741044 | 5.617 | 8.586 | 1 | 6.683594 | -0.525569 | -1.075023 | -0 | 3.972297 | 6.742636 | 6.173786 | 9.131591 | 8.757953 | 8.595263 | 11.299488 | coding | NC_000001.11 |
1 | 1,616,547 | T | C | 0 | 0.54761 | -0.394 | -0.175 | 0 | -1.503906 | -2.388866 | -1.560078 | 0.000002 | -1.050493 | -0.868663 | -0.829598 | -1.482336 | -1.00229 | -1.579914 | -0.895532 | coding | NC_000001.11 |
1 | 1,640,423 | C | T | 0 | 2.384015 | 5.637 | 3.468 | 0.995 | 4.613281 | 0.965639 | 0.690363 | -0 | 5.405758 | 5.725149 | 5.986575 | 6.238232 | 5.686343 | 7.311368 | 5.608354 | coding | NC_000001.11 |
1 | 1,641,819 | C | T | 0 | 0.617502 | 0.039 | -0.278 | 0.987 | -0.884766 | -1.752486 | -1.860513 | 0.000004 | -1.299283 | -1.048271 | -1.348756 | 0.675008 | 3.246334 | 0.566108 | 3.473423 | coding | NC_000001.11 |
1 | 1,668,373 | C | T | 0 | 1.409952 | 3.753 | 2.372 | 0.998 | 3.203125 | -0.303669 | -0.171759 | 0.000001 | 5.301667 | 3.29024 | 3.720499 | 5.273205 | 3.54248 | 4.348873 | 2.975427 | coding | NC_000001.11 |
1 | 1,668,449 | A | G | 0 | -0.356083 | -0.521 | -3.961 | 0.048 | -0.150391 | -0.13061 | -0.076163 | -0.000001 | -0.582891 | -0.61123 | -0.934309 | 0.125852 | 0.594709 | 0.231431 | 0.178945 | coding | NC_000001.11 |
1 | 1,707,486 | C | T | 0 | 1.558467 | 3.757 | 6.882 | 0.998 | 2.923828 | 1.594161 | 1.675307 | -0 | 1.278774 | 5.469384 | 3.308107 | 4.51382 | 5.157186 | 4.283215 | 5.128084 | coding | NC_000001.11 |
1 | 1,707,555 | C | T | 0 | 2.087687 | 4.923 | 3.468 | 0.984 | 3.8125 | 1.061883 | 0.652915 | -0 | 5.023389 | 5.071245 | 5.326769 | 5.180477 | 6.228792 | 5.243701 | 5.142193 | coding | NC_000001.11 |
1 | 1,719,406 | G | A | 0 | 4.246027 | 6.251 | 5.87 | 1 | 1.825195 | -0.534589 | -0.3699 | 0.000003 | 0.071974 | -0.482655 | 5.252722 | 3.128936 | 1.731082 | 3.046178 | 2.803921 | coding | NC_000001.11 |
1 | 1,754,601 | G | T | 0 | -0.4479 | -1.13 | -6.418 | 0.005 | 6.25 | 2.020501 | 1.110811 | -0.000002 | 0.983163 | 4.010463 | 5.051446 | 5.777875 | 4.983862 | 4.855288 | 6.485612 | coding | NC_000001.11 |
1 | 1,804,496 | T | C | 1 | 4.523403 | 7.839 | 6.134 | 1 | 11.46875 | 1.821613 | 4.341127 | 0.000002 | 5.362856 | 7.370704 | 6.813689 | 13.227619 | 10.90129 | 14.739583 | 11.461182 | coding | NC_000001.11 |
1 | 1,804,497 | C | A | 1 | 4.21045 | 7.729 | 8.579 | 1 | 12.976563 | 2.483841 | 5.962761 | -0 | 7.133025 | 8.987746 | 8.345491 | 16.853919 | 12.994359 | 18.659209 | 13.430751 | coding | NC_000001.11 |
1 | 1,804,502 | C | A | 1 | 3.918063 | 7.729 | 8.579 | 1 | 12.234375 | -0.686745 | 2.546938 | 0.000001 | 8.203038 | 8.515836 | 7.499916 | 14.425808 | 12.087279 | 16.10641 | 13.870892 | coding | NC_000001.11 |
1 | 1,804,508 | C | T | 1 | 3.913554 | 7.729 | 8.579 | 1 | 12.179688 | 1.870025 | 3.712016 | -0.000001 | 5.516893 | 8.750956 | 8.221037 | 11.417975 | 9.893018 | 10.747685 | 11.168369 | coding | NC_000001.11 |
1 | 1,804,562 | C | A | 1 | 3.636235 | 7.729 | 8.579 | 1 | 12.109375 | 1.033292 | 1.649601 | 0.000004 | 9.921362 | 9.487187 | 9.13999 | 14.24494 | 11.585497 | 13.124015 | 11.907767 | coding | NC_000001.11 |
1 | 1,806,503 | A | T | 1 | 4.256918 | 9.083 | 5.836 | 1 | 13.328125 | 0.426885 | 0.263809 | 0.000001 | 9.7982 | 9.519138 | 9.171596 | 12.522183 | 13.47315 | 13.037601 | 13.844513 | coding | NC_000001.11 |
1 | 1,806,512 | C | A | 1 | 3.826645 | 7.706 | 8.186 | 1 | 13.140625 | 2.726112 | 2.310472 | 0.000001 | 9.600264 | 8.987746 | 8.549738 | 16.320407 | 12.596434 | 15.134084 | 13.583246 | coding | NC_000001.11 |
1 | 1,806,513 | C | A | 1 | 4.119774 | 7.706 | 8.186 | 1 | 12.445313 | 2.286345 | -0.663415 | -0.000003 | 8.530225 | 8.845664 | 8.424864 | 13.063226 | 10.637304 | 12.680113 | 10.869285 | coding | NC_000001.11 |
1 | 1,806,514 | A | T | 1 | 3.207073 | 2.553 | -1.389 | 1 | 9.609375 | 2.066875 | 2.518185 | -0 | 9.046723 | 8.532066 | 8.124447 | 13.651877 | 11.124712 | 12.070015 | 10.546722 | coding | NC_000001.11 |
1 | 1,806,515 | T | C | 1 | 4.491082 | 7.815 | 5.859 | 1 | 11.578125 | 3.729162 | 4.305667 | 0.000001 | 8.921301 | 8.063851 | 8.132844 | 12.797464 | 11.192427 | 12.523984 | 12.027575 | coding | NC_000001.11 |
1 | 1,815,796 | G | C | 1 | 1.810245 | -0.022 | 0.045 | 0.933 | 8.492188 | 0.129889 | 0.150908 | -0.000002 | 4.575043 | 8.139518 | 8.517523 | 12.744521 | 8.933823 | 10.626151 | 10.952718 | coding | NC_000001.11 |
1 | 1,916,540 | T | C | 0 | 1.204282 | -0.175 | -1.396 | 0 | -2.607422 | -1.156277 | -1.685189 | 0 | -5.322034 | -5.989702 | -6.674003 | -5.261201 | -7.359232 | -5.373526 | -6.650831 | coding | NC_000001.11 |
1 | 1,918,090 | A | G | 0 | 0.828084 | 1.22 | 0.809 | 0.013 | 3.164063 | 0.653571 | 0.434833 | -0.000001 | 1.469493 | 3.368572 | 2.629488 | 2.147663 | 4.615465 | 3.810565 | 4.863924 | coding | NC_000001.11 |
1 | 1,918,091 | T | C | 0 | 0.067017 | -0.082 | -0.16 | 0.001 | 2.382813 | -0.823844 | -0.971521 | -0.000001 | 0.170221 | 2.232852 | 0.769133 | 3.770611 | 4.006744 | 3.056837 | 4.361003 | coding | NC_000001.11 |
1 | 1,918,484 | C | A | 0 | 0.529345 | -0.094 | -0.465 | 0.014 | 2.439453 | 0.745362 | 0.920779 | -0.000001 | 1.5949 | 1.318548 | 1.38182 | 1.276761 | 5.03856 | 1.617617 | 4.373536 | non-coding | NC_000001.11 |
1 | 1,923,107 | C | T | 0 | 2.031239 | 0.55 | 5.883 | 0.438 | 3.990234 | 0.194937 | 0.242315 | -0.000003 | 2.3892 | 5.47671 | 4.859998 | 3.979481 | 6.004083 | 3.529667 | 5.201937 | coding | NC_000001.11 |
1 | 1,923,833 | C | G | 1 | 3.512015 | 2.846 | 8.659 | 1 | 7.753906 | -0.196059 | 0.020362 | 0 | 5.735404 | 5.990971 | 5.439817 | 6.877297 | 6.706469 | 5.194876 | 6.077383 | coding | NC_000001.11 |
1 | 1,927,024 | C | T | 1 | 0.783969 | 0.382 | 0.03 | 0 | 1.996094 | 0.378825 | 0.270885 | 0.000002 | 1.096279 | 2.139229 | 3.031639 | 3.595587 | 2.430351 | 3.766405 | 1.018811 | coding | NC_000001.11 |
1 | 1,927,692 | C | T | 0 | -1.649318 | -3.588 | -5.924 | 0 | -0.583008 | -0.025471 | 0.046523 | -0 | 0.641412 | -0.504747 | -0.44243 | 0.198315 | 1.137317 | -0.105217 | 0.758907 | coding | NC_000001.11 |
1 | 1,927,737 | T | C | 0 | 0.435867 | -0.144 | 3.951 | 0 | -1.25293 | -0.551825 | -0.595555 | 0 | -0.61533 | -0.898816 | -2.037865 | -1.002217 | -0.132375 | -0.776046 | -2.621941 | coding | NC_000001.11 |
1 | 1,930,143 | C | T | 0 | 3.552757 | 3.98 | 6.968 | 1 | 6.273438 | 0.25559 | 0.545018 | -0.000002 | 5.057544 | 6.089229 | 7.656368 | 3.504193 | 6.471041 | 6.050732 | 5.810993 | coding | NC_000001.11 |
1 | 1,942,086 | T | C | 0 | 1.532497 | 2.516 | 1.494 | 0.999 | -3.904297 | -0.125047 | -0.336852 | 0 | -2.138956 | 1.322391 | -4.523526 | -5.997955 | -2.457267 | -5.342058 | -1.975613 | coding | NC_000001.11 |
1 | 1,944,419 | C | G | 0 | 2.364683 | 1.874 | 4.094 | 0.939 | 7.394531 | -0.410565 | -0.383748 | -0.000004 | 4.469774 | 4.34293 | 6.2186 | 6.236044 | 6.269704 | 5.755176 | 6.10647 | coding | NC_000001.11 |
1 | 1,968,793 | T | C | 0 | -0.478732 | 0.054 | 0.904 | 0.001 | -2.328125 | 0.331844 | 0.760876 | -0 | 0.693147 | 0.276094 | 1.707076 | -1.694331 | -0.408094 | -1.776515 | -0.537003 | coding | NC_000001.11 |
1 | 1,970,722 | C | T | 1 | 3.017338 | 3.879 | 8.484 | 0.98 | 6.839844 | -0.757549 | -0.503136 | -0 | -0.591364 | -3.304095 | 0.905117 | 4.59937 | 3.922136 | 4.443548 | 2.947781 | coding | NC_000001.11 |
1 | 1,974,047 | G | A | 1 | 0.650387 | -1.589 | -0.894 | 0 | 0.416016 | 1.782265 | 0.490918 | -0 | 0.047402 | 2.128431 | 2.106691 | 4.841298 | 2.747596 | 4.379221 | 1.032501 | coding | NC_000001.11 |
1 | 2,025,598 | T | C | 0 | 1.082832 | -1.217 | 0.193 | 0 | -3.611328 | -3.545675 | -3.586224 | 0.000001 | -3.741761 | -3.490737 | -3.639118 | -4.20991 | -4.325091 | -3.763447 | -3.886728 | coding | NC_000001.11 |
1 | 2,029,197 | C | G | 1 | 3.146233 | 2.655 | 5.777 | 1 | 9.546875 | -0.056515 | 4.209748 | -0.000006 | 7.777823 | 8.238629 | 9.248872 | 9.081068 | 7.677629 | 8.121512 | 7.423055 | coding | NC_000001.11 |
1 | 2,029,235 | C | T | 0 | 0.219853 | -0.476 | -1.463 | 0.112 | 0.580078 | 0.574805 | 3.325427 | -0.000001 | 2.872455 | 3.960751 | 3.114792 | 1.841202 | 2.293186 | 3.682693 | 0.81415 | coding | NC_000001.11 |
1 | 2,193,733 | G | A | 0 | 0.285874 | -0.118 | 0.297 | 0 | 1.341797 | 1.296382 | 1.07931 | -0.000001 | 0.92587 | 2.161359 | 1.997203 | 0.987351 | 2.121108 | 0.953787 | 1.873307 | coding | NC_000001.11 |
1 | 2,228,825 | C | T | 1 | 3.865474 | 6.406 | 5.785 | 1 | 7.746094 | -0.857549 | -0.779931 | -0.000002 | 4.938682 | 4.904568 | 2.061974 | 5.901509 | 6.513581 | 6.689042 | 7.955806 | coding | NC_000001.11 |
1 | 2,228,828 | T | G | 1 | 3.488515 | 4.895 | 3.829 | 1 | 10.546875 | 1.431248 | 1.491518 | 0.000001 | 8.872511 | 7.401475 | 8.747042 | 11.123493 | 9.920112 | 10.833296 | 8.392279 | coding | NC_000001.11 |
1 | 2,228,848 | T | A | 1 | 2.8778 | 1.305 | 3.824 | 1 | 7.722656 | -0.34151 | -0.390475 | 0 | 5.647832 | 3.35451 | 7.292656 | 11.133122 | 7.351341 | 10.475573 | 7.54264 | coding | NC_000001.11 |
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Updates
[2025-09-09] We have added ClinVar variant effect prediction results to the repository. The evaluation dataset was sourced from SongLab. The benchmark includes comparisons of GENERator against Evo2, NT, NT-v2, HyenaDNA, GPN-MSA, CADD, phyloP, and phastCons.
Abouts
The human reference genome data is sourced from the NCBI website.
We have applied minor formatting adjustments to the dataset to facilitate streamlined data analysis.
How to use
from datasets import load_dataset
datasets = load_dataset("GenerTeam/variant-effect-prediction")
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