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UniProt search (6/17/2025):
(cc_scl_term_exp:SL-0086) OR (cc_scl_term_exp:SL-0191) OR (cc_scl_term_exp:SL-0243) OR (cc_scl_term_exp:SL-0162) OR (cc_scl_term_exp:SL-0173) OR (cc_scl_term_exp:SL-0209) OR (cc_scl_term_exp:SL-0095) OR (cc_scl_term_exp:SL-0272) OR (cc_scl_term_exp:SL-0158) OR (cc_scl_term_exp:SL-0132) OR (cc_scl_term_exp:SL-0204) OR (cc_scl_term_exp:SL-0049) OR (cc_scl_term_exp:SL-0041)
Filtered for specific subcellular location terms:
(1) Cytoplasm
(2) Nucleus
(3) Secreted
(4) Membrane
(5) Mitochondria
(6) Plastid
(7) Endoplasmic Reticulum
(8) Vacuole
(9) Lysosome
(10) Golgi Apparatus
(11) Peroxisome
(12) Chloroplast
(13) Cell Wall
Curation steps:
- Filtered for sequence length >=20 and <=2048
- CD-HIT using Docker at 80% similarity threshold and n=5
- Keep representative sequences
- Parse subcellular locations into a clean list of labels (remove notes & ECO numbers)
- Keep only examples with label in the location map (above)
- Remove duplicates
- Unique label list (assign 0 or 1 to a bitstring), convert to vector
- Shuffle and split randomly into train, valid (1k), and test (1k)
---
dataset_info:
features:
- name: labels
dtype: string
- name: seqs
dtype: string
splits:
- name: train
num_bytes: 15913904
num_examples: 32638
- name: valid
num_bytes: 472742
num_examples: 1000
- name: test
num_bytes: 484576
num_examples: 1000
download_size: 15433449
dataset_size: 16871222
configs:
- config_name: default
data_files:
- split: train
path: data/train-*
- split: valid
path: data/valid-*
- split: test
path: data/test-*
---
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