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Hack90
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experiment_one_viral_genomes_val_set

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train · 71.3k rows

id stringlengths 11 11	sequence stringlengths 1 1.02k	name stringlengths 11 11	description stringlengths 30 433	features int64 0 0	seq_length int64 237 668k	sequence_quality float64 0 0	text stringlengths 1 1.02k	__index_level_0__ int64 1 18.7k	input_ids sequencelengths 1 1.02k	attention_mask sequencelengths 1 1.02k	2D_Sequence sequencelengths 1 1.02k	2D_Sequence_Scaled sequencelengths 1 1.02k	2D_Sequence_Interpolated sequencelengths 1 1k
NC_021629.1	GGCTTTTAATTGCTACCATGAGCATGGATCTTGATATAGACTTAGCCAACTGTGTTATTGATTCAAGTTCAATAATAGGAGGATCTAATACTGGATCTAGATTACCTTTTACGCAAGCAGCATCTTACACTACCACATCTCTTGCTGGTTTGGAGGAAGCGGAGAATGAACGAAGAAAGGCAATAGAGTATTCAAAATATATGCTAGAAAAACAAGATTTAGGTCCAAATGATTCCGCTTCGAACGACGGAATGAATGAATGGTCAGTATCATCAAGATCTTTTTCTACAAATGAGTCAAATATGGAATCTGTTAATAATTTTGAAATTAACCTACCGTCTGACCATTCTTGTGTTTCAGTTAAGTCATCTAATTCGATGAATTCACAAAATTCACAAAATTTCAAGTCCGCAGTGCAAAGCATTACTCAGCATCAATCACGAATTAGGGAGAATCCTAAACCACAAAAGCAGTATCAACAAAAGAAGAGGAAACATAAAGAAAAGGCTGTGATTGATGCCATTTCTGATGATGAATGGGGAAATAGAGTAGAGTCATTTGATGAATCATCGGATTCAGACACCTGTAATAATAGTTGTAAGTGTTGCAAGCGCTACAAGAAACTAAAGAAAAGTGTGAAGCATACAGTGGCTAAGCTTATATCCGATCTATAATCATGCGGTGATCCCCACACTGACCTGTGACC	NC_021629.1	NC_021629.1 Rotavirus F chicken/03V0568/DEU/2003 segment 10, complete sequence	0	706	0	ggcttttaattgctaccatgagcatggatcttgatatagacttagccaactgtgttattgattcaagttcaataataggaggatctaatactggatctagattaccttttacgcaagcagcatcttacactaccacatctcttgctggtttggaggaagcggagaatgaacgaagaaaggcaatagagtattcaaaatatatgctagaaaaacaagatttaggtccaaatgattccgcttcgaacgacggaatgaatgaatggtcagtatcatcaagatctttttctacaaatgagtcaaatatggaatctgttaataattttgaaattaacctaccgtctgaccattcttgtgtttcagttaagtcatctaattcgatgaattcacaaaattcacaaaatttcaagtccgcagtgcaaagcattactcagcatcaatcacgaattagggagaatcctaaaccacaaaagcagtatcaacaaaagaagaggaaacataaagaaaaggctgtgattgatgccatttctgatgatgaatggggaaatagagtagagtcatttgatgaatcatcggattcagacacctgtaataatagttgtaagtgttgcaagcgctacaagaaactaaagaaaagtgtgaagcatacagtggctaagcttatatccgatctataatcatgcggtgatccccacactgacctgtgacc	2,894	[ 5, 5, 4, 6, 6, 6, 6, 3, 3, 6, 6, 5, 4, 6, 3, 4, 4, 3, 6, 5, 3, 5, 4, 3, 6, 5, 5, 3, 6, 4, 6, 6, 5, 3, 6, 3, 6, 3, 5, 3, 4, 6, 6, 3, 5, 4, 4, 3, 3, 4, 6, 5, 6, 5, 6, 6, 3, 6, 6, 5, 3, 6, 6, 4...	[ 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1...	[ [ 0.8660254037844386, -0.5 ], [ 1.7320508075688772, -1 ], [ 2.598076211353316, -0.5 ], [ 3.098076211353316, 0.3660254037844386 ], [ 3.598076211353316, 1.2320508075688772 ], [ 4.098076211353316, 2.098076211353316 ], [ 4.598076211353316, ...	[ [ -1.733277341261336, 1.004534252272741 ], [ -1.7265488314809099, 0.9807463187070089 ], [ -1.7198203217004837, 1.004534252272741 ], [ -1.7159356147675096, 1.0457361618156615 ], [ -1.7120509078345356, 1.0869380713585826 ], [ -1.7081662009015615, 1.1...	[ [ -1.733277341261336, 1.004534252272741 ], [ -1.7265488314809099, 0.9807463187070089 ], [ -1.7198203217004837, 1.004534252272741 ], [ -1.7159356147675096, 1.0457361618156615 ], [ -1.7120509078345356, 1.0869380713585826 ], [ -1.7081662009015615, 1.1...
NC_011067.1	"CCCAGTTTTACGGCTATTCACCGCAAAAGATCGAGTGATATCAGTAGTCAAGGGTTTTGACCCTAACGTACATCCATCAGACGAAGAACTCTTTCTCCT(...TRUNCATED)	NC_011067.1	NC_011067.1 Epirus cherry virus	0	960	0	"cccagttttacggctattcaccgcaaaagatcgagtgatatcagtagtcaagggttttgaccctaacgtacatccatcagacgaagaactctttctcct(...TRUNCATED)	5,547	[4,4,4,3,5,6,6,6,6,3,4,5,5,4,6,3,6,6,4,3,4,4,5,4,3,3,3,3,5,3,6,4,5,3,5,6,5,3,6,3,6,4,3,5,6,3,5,6,4,3(...TRUNCATED)	[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)	[[0.8660254037844386,0.5],[1.7320508075688772,1.0],[2.598076211353316,1.5],[3.098076211353316,0.6339(...TRUNCATED)	[[-1.7132858056784264,-1.1957862481415327],[-1.7087847190552046,-1.1204606665446555],[-1.70428363243(...TRUNCATED)	[[-1.7132858056784264,-1.1957862481415327],[-1.7087847190552046,-1.1204606665446555],[-1.70428363243(...TRUNCATED)
NC_043496.1	"CGCGGAATTTGGTTACACGTCTAGCTGCTGACGTTAAATGCAGCCGGGTGGTAATGCGTATTAATATTTCAACAACATGAATAAGCGCATTAATAATAA(...TRUNCATED)	NC_043496.1	NC_043496.1 Macrobrachium rosenbergii XSV virus isolate M299 capsid protein gene, complete cds	0	808	0	"cgcggaatttggttacacgtctagctgctgacgttaaatgcagccgggtggtaatgcgtattaatatttcaacaacatgaataagcgcattaataataa(...TRUNCATED)	7,966	[4,5,4,5,5,3,3,6,6,6,5,5,6,6,3,4,3,4,5,6,4,6,3,5,4,6,5,4,6,5,3,4,5,6,6,3,3,3,6,5,4,3,5,4,4,5,5,5,6,5(...TRUNCATED)	[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)	[[0.8660254037844386,0.5],[1.7320508075688772,0.0],[2.598076211353316,0.5],[3.4641016151377544,0.0],(...TRUNCATED)	[[-1.7317502635050375,1.7221615450873775],[-1.7261083039384482,1.5820996438634523],[-1.7204663443718(...TRUNCATED)	[[-1.7317502635050375,1.7221615450873775],[-1.7261083039384482,1.5820996438634523],[-1.7204663443718(...TRUNCATED)
NC_006458.1	"AAGGGAGACTCCCCAGTGTGTAATTTTTTGGACGGAGAGATGTTGGCCGTGGGCAGCAACCCGTGGATAGCTGATAAGATCGTCTAGAGGGTGGGGACC(...TRUNCATED)	NC_006458.1	NC_006458.1 Tobacco bushy top virus satellite-like RNA, complete genome	0	781	0	"aagggagactccccagtgtgtaattttttggacggagagatgttggccgtgggcagcaacccgtggatagctgataagatcgtctagagggtggggacc(...TRUNCATED)	3,897	[3,3,5,5,5,3,5,3,4,6,4,4,4,4,3,5,6,5,6,5,6,3,3,6,6,6,6,6,6,5,5,3,4,5,5,3,5,3,5,3,6,5,6,6,5,5,4,4,5,6(...TRUNCATED)	[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)	[[0.5,-0.8660254037844386],[1.0,-1.7320508075688772],[1.8660254037844386,-2.232050807568877],[2.7320(...TRUNCATED)	[[-1.7207289837507032,0.8732462117090081],[-1.7176302779442352,0.7857535331273559],[-1.7122631620497(...TRUNCATED)	[[-1.7207289837507032,0.8732462117090081],[-1.7176302779442352,0.7857535331273559],[-1.7122631620497(...TRUNCATED)
NC_078215.1	"ACCCCCGTGCCGGGATCAGAGACATTTGACCAAGTTTGACTAAATAGTGATAAATGAAACGCTGCGTTTTAATAAGCTTATTGTGTAAGCTGCTAAGAC(...TRUNCATED)	NC_078215.1	"NC_078215.1 Subterranean clover stunt virus isolate Myall Vale 2534B segment DNA-U2, complete seque(...TRUNCATED)	0	995	0	"acccccgtgccgggatcagagacatttgaccaagtttgactaaatagtgataaatgaaacgctgcgttttaataagcttattgtgtaagctgctaagac(...TRUNCATED)	17,742	[3,4,4,4,4,4,5,6,5,4,4,5,5,5,3,6,4,3,5,3,5,3,4,3,6,6,6,5,3,4,4,3,3,5,6,6,6,5,3,4,6,3,3,3,6,3,5,6,5,3(...TRUNCATED)	[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)	[[0.5,-0.8660254037844386],[1.3660254037844386,-0.3660254037844386],[2.232050807568877,0.13397459621(...TRUNCATED)	[[-1.7424726746594992,1.4602395132596013],[-1.7376670093802566,1.4876937482453925],[-1.7328613441010(...TRUNCATED)	[[-1.7424726746594992,1.4602395132596013],[-1.7376670093802566,1.4876937482453925],[-1.7328613441010(...TRUNCATED)
NC_055609.1	"ACCCACGGGACGGGGCGCTGGCTACATTTGACTTGGTCAATAACACGGGAGAGGAAAAAAACAATTGGGCTAGGCCCAATAAGCATATAAGCCCATTTA(...TRUNCATED)	NC_055609.1	NC_055609.1 Parsley severe stunt associated virus isolate Pa21 segment DNA-C, complete sequence	0	965	0	"acccacgggacggggcgctggctacatttgacttggtcaataacacgggagaggaaaaaaacaattgggctaggcccaataagcatataagcccattta(...TRUNCATED)	9,944	[3,4,4,4,3,4,5,5,5,3,4,5,5,5,5,4,5,4,6,5,5,4,6,3,4,3,6,6,6,5,3,4,6,6,5,5,6,4,3,3,6,3,3,4,3,4,5,5,5,3(...TRUNCATED)	[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)	[[0.5,-0.8660254037844386],[1.3660254037844386,-0.3660254037844386],[2.232050807568877,0.13397459621(...TRUNCATED)	[[-1.7823227822877796,2.2654505008329426],[-1.7772828618849845,2.2948022191441826],[-1.7722429414821(...TRUNCATED)	[[-1.7823227822877796,2.2654505008329426],[-1.7772828618849845,2.2948022191441826],[-1.7722429414821(...TRUNCATED)
NC_027432.1	"TGTGGTTCCTATGGTTGCACCCCTGACCTGCTACCTGCAAAAGAAAAAAGATGGGCAGGCGAGCACAACGCTTCAGGGATCCCCGGGGAAACCTGGAGC(...TRUNCATED)	NC_027432.1	NC_027432.1 Portulaca latent viroid isolate Vd21, complete genome	0	351	0	"tgtggttcctatggttgcacccctgacctgctacctgcaaaagaaaaaagatgggcaggcgagcacaacgcttcagggatccccggggaaacctggagc(...TRUNCATED)	254	[6,5,6,5,5,6,6,4,4,6,3,6,5,5,6,6,5,4,3,4,4,4,4,6,5,3,4,4,6,5,4,6,3,4,4,6,5,4,3,3,3,3,5,3,3,3,3,3,3,5(...TRUNCATED)	[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)	[[0.5,0.8660254037844386],[1.3660254037844386,0.3660254037844386],[1.8660254037844386,1.232050807568(...TRUNCATED)	[[-1.7138964754191528,0.7827066777099678],[-1.7020346596380762,0.735966087109408],[-1.69518623710379(...TRUNCATED)	[[-1.7138964754191528,0.7827066777099678],[-1.7020346596380762,0.735966087109408],[-1.69518623710379(...TRUNCATED)
NC_078473.1	"TTAAACATCCCATGGATATGCTATTTTAATATCTGTCAGAGGTTTTGTTTCCAAAGCCTTGGCAATTTCCTTCAATCCAGCATCTGTCACATTTGTTTT(...TRUNCATED)	NC_078473.1	"NC_078473.1 Fitzroy Crossing tenui-like virus 1 isolate FCTeLV1/pool-6 nucleoprotein (QK709_gp1) ge(...TRUNCATED)	0	942	0	"ttaaacatcccatggatatgctattttaatatctgtcagaggttttgtttccaaagccttggcaatttccttcaatccagcatctgtcacatttgtttt(...TRUNCATED)	18,513	[6,6,3,3,3,4,3,6,4,4,4,3,6,5,5,3,6,3,6,5,4,6,3,6,6,6,6,3,3,6,3,6,4,6,5,6,4,3,5,3,5,5,6,6,6,6,5,6,6,6(...TRUNCATED)	[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)	[[0.5,0.8660254037844386],[1.0,1.7320508075688772],[1.5,0.8660254037844386],[2.0,0.0],[2.5,-0.866025(...TRUNCATED)	[[-1.7280072796422539,-2.4344185700428422],[-1.7250913658189164,-2.3847614712179688],[-1.72217545199(...TRUNCATED)	[[-1.7280072796422539,-2.4344185700428422],[-1.7250913658189164,-2.3847614712179688],[-1.72217545199(...TRUNCATED)
NC_079005.1	"GTAGTGTACTCCACGCATAAAACTTTTTATCGTTGAGACATTACTACTAGAGGATTTGAGTCTTTGACTTATTCTTTCTTTTTCAATGTTGGAGCTAGA(...TRUNCATED)	NC_079005.1	NC_079005.1 Ebinur lake virus isolate Cu20-XJ segment S, complete sequence	0	973	0	"gtagtgtactccacgcataaaactttttatcgttgagacattactactagaggatttgagtctttgacttattctttctttttcaatgttggagctaga(...TRUNCATED)	17,884	[5,6,3,5,6,5,6,3,4,6,4,4,3,4,5,4,3,6,3,3,3,3,4,6,6,6,6,6,3,6,4,5,6,6,5,3,5,3,4,3,6,6,3,4,6,3,4,6,3,5(...TRUNCATED)	[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)	[[0.8660254037844386,-0.5],[1.3660254037844386,0.3660254037844386],[1.8660254037844386,-0.5],[2.7320(...TRUNCATED)	[[-1.7129153297716464,0.49970578767272245],[-1.7102180705438714,0.5413470403480813],[-1.707520811316(...TRUNCATED)	[[-1.7129153297716464,0.49970578767272245],[-1.7102180705438714,0.5413470403480813],[-1.707520811316(...TRUNCATED)
NC_003560.1	"CTGGGGCGGGGCTTAGTATTACCCCCGCCCCAGGTTCAGCGGAGTCATCACGTGGATTACACGTGATATTAGTCTATATATAGCTCAAGTTGTAATATT(...TRUNCATED)	NC_003560.1	NC_003560.1 Faba bean necrotic yellows virus DNA-R, complete sequence	0	1,003	0	"ctggggcggggcttagtattacccccgccccaggttcagcggagtcatcacgtggattacacgtgatattagtctatatatagctcaagttgtaatatt(...TRUNCATED)	6,346	[4,6,5,5,5,5,4,5,5,5,5,4,6,6,3,5,6,3,6,6,3,4,4,4,4,4,5,4,4,4,4,3,5,5,6,6,4,3,5,4,5,5,3,5,6,4,3,6,4,3(...TRUNCATED)	[1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1,1(...TRUNCATED)	[[0.8660254037844386,0.5],[1.3660254037844386,1.3660254037844386],[2.232050807568877,0.8660254037844(...TRUNCATED)	[[-1.7293935636644133,0.8009211450194036],[-1.7267251757650681,0.8320991186464448],[-1.7221033923491(...TRUNCATED)	[[-1.7293935636644133,0.8009211450194036],[-1.7267112965355906,0.8320450627561554],[-1.7220756338901(...TRUNCATED)

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Collection including Hack90/experiment_one_viral_genomes_val_set

Experiment Datasets

3 items • Updated Apr 7, 2024