Accession
stringlengths
8
11
Organism_Name
stringlengths
10
53
Submitters
stringlengths
4
2.42k
Organization
stringlengths
3
234
Org_location
stringlengths
3
24
Release_Date
stringlengths
10
10
Isolate
stringlengths
1
75
Species
stringlengths
10
53
Genus
stringlengths
7
22
Family
stringlengths
10
19
Molecule_type
stringclasses
14 values
Length
int64
5k
95.4k
Sequence_Type
stringclasses
2 values
Publications
float64
1
134
Geo_Location
stringlengths
3
88
Country
stringlengths
3
32
Host
stringlengths
3
64
Isolation_Source
stringlengths
3
31
Collection_Date
stringlengths
4
10
BioSample
stringlengths
12
14
BioProject
stringlengths
9
23
GenBank_Title
stringlengths
22
320
Sequence
stringlengths
5k
95.4k
__index_level_0__
int64
39
112k
KM882641.1
Canna yellow streak virus
Chauhan,R.P., Verchot,J.
Oklahoma State University, Entomology and Plant Pathology
USA
2014-11-18
BZ1
Canna yellow streak virus
Potyvirus
Potyviridae
ssRNA(+)
9,498
GenBank
null
USA
USA
Canna
plant leaf
2013-08-05
null
null
Canna yellow streak virus isolate BZ1, complete genome
AAAATAAACCAATCCCAACACAACCTAACGAATTCTAGCTCAATCGCTCGAAACTTTTGCTTTCAAACTCTCAGAAACAAGCTTTCAGTTCACTCAAACTCCACGTACAGCCAACCACTTGTGAGCTCTCGCATAGAGATAAGCAAGATAGCCATGGCAGGAGAATGGACTTTAGTTGTAGACAGGCGCGAACGAAGGCTCACTGATGAGCAGAAAATACTGCGCGCACAACGGAGGTTTTTCGCAAAGCATCGTGTGTACGATGCAAAGCGTGCTCGGGAACATAATGCACGTTTACTTAAGATGCCACTATCGGAACC...
88,678
KM882642.1
Canna yellow streak virus
Chauhan,R.P., Verchot,J.
Oklahoma State University, Entomology and Plant Pathology
USA
2014-11-18
BZ2
Canna yellow streak virus
Potyvirus
Potyviridae
ssRNA(+)
9,498
GenBank
null
USA
USA
Canna
plant leaf
2013-08-05
null
null
Canna yellow streak virus isolate BZ2, complete genome
AAAATAAACCAATCCCAACACAACCCAACGAATTCTAGCTCAATCGCTCGAAACTTTTGCTTTCAAACTCTCGGAAACAAACTTTCAGTTTACTCGAACTCCAGGCACAGCCGAACACTTGTGAGCTCTCGCATAGAGATAAGCAAGATAACCATGGCAGGAGAATGGACTTTTGTTGTTGACAGGCGCGAACGAAGGCTCACTGATGAGCAGAAGATATTACGCGCACAGCGTAAATTTTACGCAAAGCATCGTGTGTATGATGCAAAGCGTGCTCGGGAACATAATGCACGCTTACTTAAGATGTCATTACCTGAACT...
88,679
KM882643.1
Canna yellow streak virus
Chauhan,R.P., Verchot,J.
Oklahoma State University, Entomology and Plant Pathology
USA
2014-11-18
BZ3
Canna yellow streak virus
Potyvirus
Potyviridae
ssRNA(+)
9,498
GenBank
null
USA
USA
Canna
plant leaf
2013-08-05
null
null
Canna yellow streak virus isolate BZ3, complete genome
AAAATAAACCAATCCCAACACAACCTAACGAATTCTAGCTCAATCGCTCGAAACTTTTGCTTTCAAACTCTCGGAAACAAACTTTCGGTTTACTCGAACTCCAGGCACAGCCGAACACTTGTGAGCTCTCGCATAGAGATAAGCAAGATAACCATGGCAGGAGAATGGACTTTTGTTGTTGACAGGCGCGAACGAAGGCTCACTGATGAGCAGAAGATATTACGCGCACAGCGTAAATTTTACGCAAAGCATCGTGTGTATGATGCAAAGCGTGCTCGGGAGCATAATGCACGCTTACTTAAGATGTCATTACCTGAACT...
88,680
KM882644.1
Canna yellow streak virus
Chauhan,R.P., Verchot,J.
Oklahoma State University, Entomology and Plant Pathology
USA
2014-11-18
NC1
Canna yellow streak virus
Potyvirus
Potyviridae
ssRNA(+)
9,498
GenBank
null
USA
USA
Canna
plant leaf
2013-08-05
null
null
Canna yellow streak virus isolate NC1, complete genome
AAAATAAACCAATCCCAACACAACCTAACGAATTCTAGCTCAATCGCTCGAAACTTTTGCTTTCAAACTCTCGGAAACAAACTTTCGGTTTACTCGAACTCCAGGCACAGCCGAACACTTGTGAGCTCTCGCATAGAGATAAGCAAGATAACCATGGCAGGAGAATGGACTTTTGTTGTTGACAGGCGCGAACGAAGGCTCACTGATGAGCAGAAGATATTACGCGCACAGCGTAAATTTTACGCAAAGCATCGTGTGTATGATGCAAAGCGTGCTCGGGAACATAATGCACGCTTACTTAAGATGTCACTACCTGAACT...
88,681
KM882645.1
Canna yellow streak virus
Chauhan,R.P., Verchot,J.
Oklahoma State University, Entomology and Plant Pathology
USA
2014-11-18
NC2
Canna yellow streak virus
Potyvirus
Potyviridae
ssRNA(+)
9,498
GenBank
null
USA
USA
Canna
plant leaf
2013-08-05
null
null
Canna yellow streak virus isolate NC2, complete genome
AAAATAAACCAATCCCAACACAACCTAACGAATTCTAGCTCAATCGCTCGAAACTTTTGCTTTCAAACTCTCGGAAACAAACTTTCGGTTTACTCGAACTCCAGGCACAGCCGAACACTTGTGAGCTCTCGCATAGAGATAAGCAAGATAACCATGGCAGGAGAATGGACTTTTGTTGTTGACAGGCGCGAACGAAGGCTCACTGATGAGCAGAAGATATTACGCGCACAGCGTAAATTTTACGCAAAGCATCGTGTGTATGATGCAAAGCGTGCCCGGGAACATAATGCACGCTTACTTAAGATGTCATTACCTGAACT...
88,682
KM882646.1
Canna yellow streak virus
Chauhan,R.P., Verchot,J.
Oklahoma State University, Entomology and Plant Pathology
USA
2014-11-18
NC3
Canna yellow streak virus
Potyvirus
Potyviridae
ssRNA(+)
9,498
GenBank
null
USA
USA
Canna
plant leaf
2013-08-05
null
null
Canna yellow streak virus isolate NC3, complete genome
AAAATAAACCAATCCCAACACAACCCAACGAATTCTAGCTCAATCGCTCGAAACTTTTGCTTTCAAACTCTCGGAAACAAACTTTCGGTTTACTCGAACTCCAGGCACAGCCGAACACTTGTGAGCTCTCGCATAGAGATAAGCAAGATAACCATGGCAGGAGAATGGACTTTTGTTGTTGACAGGCGCGAACGAAGGCTCACTGATGAGCAGAAGATATTACGCGCACAGCGTAAATTTTACGCAAAGCATCGTGTGTATGATGCAAAGCGTGCTCGGGAACATAATGCACGCTTACTTAAGATGTCATTACCTGAACT...
88,683
KM882647.1
Canna yellow streak virus
Chauhan,R.P., Verchot,J.
Oklahoma State University, Entomology and Plant Pathology
USA
2014-11-18
NC4
Canna yellow streak virus
Potyvirus
Potyviridae
ssRNA(+)
9,498
GenBank
null
USA
USA
Canna
plant leaf
2013-08-05
null
null
Canna yellow streak virus isolate NC4, complete genome
AAAATAAACCAATCCCAACACAACCTAACGAATTCTAGCTCAATCGCTCGAAACTTTTGCTTTCAAACTCTCGGAAACAAACTTTCGGTTTACTCGAACTCCAGGCACAGCCAAACACTTGTGAGCTCTCGCATAGAGATAAGCAAGATAACCATGGCAGGAGAATGGACTTTTGTTGTTGACAGGCGCGAACGAAGGCTCACTGATGAGCAGAAGATATTACGCGCACAGCGTAAATTTTACGCAAAGCATCGTGTGTATGATGCAAAGCGTGCTCGGGAACATAATGCACGCTTACTTAAGATGTCATTACCTGAACT...
88,684
KM882648.1
Canna yellow streak virus
Chauhan,R.P., Verchot,J.
Oklahoma State University, Entomology and Plant Pathology
USA
2014-11-18
NC5
Canna yellow streak virus
Potyvirus
Potyviridae
ssRNA(+)
9,498
GenBank
null
USA
USA
Canna
plant leaf
2013-08-05
null
null
Canna yellow streak virus isolate NC5, complete genome
AAAATAAACCAATCCCAACACAACCTAACGAATTCTAGCTCAATCGCTCGAAACTTTTGCTTTCAAACTCTCGGAAACAAACTTTCGGTTTACTCGAACTCCAGGCACAGCCAAACACTTGTGAGCTCTCGCATAGAGATAAGCAAGATAACCATGGCAGGAGAATGGACTTTTGTTGTTGACAGGCGCGAACGAAGGCTCACTGATGAGCAGAAGATATTACGCGCACAGCGTAAATTTTACGCAAAGCATCGTGTGTATGATGCAAAGCGTGCTCGGGAACATAATGCACGCTTACTTAAGATGTCATTACCTGAACT...
88,685
GQ421689.2
Canna yellow streak virus
Monger,W.A., Glover,R.H., Adams,I.
Food and Environment Research Agency, Novel Diagnostics
null
2009-09-22
null
Canna yellow streak virus
Potyvirus
Potyviridae
ssRNA(+)
9,502
GenBank
null
United Kingdom
United Kingdom
Canna
plant leaf
2007
null
null
Canna Yellow Streak Virus from United Kingdom, complete genome
AAAATAAACCAATCCCAACACAACCTAACGAATTCTAGCTCAATCGCTCGAAACTTTTGCTTTCAAACTCTCGGAAACAAACTTTCGGTTTACTCGAACTCCAGGCACAGCCGAACACTTGTGAGCTCTCGCATAGAGATAAGCAAGATAACCATGGCAGGAGAATGGACTTTTGTTGTTGACAGGCGCGAACGAAGGCTCACTGATGAGCAGAAGATATTACGCGCACAGCGTAAATTTTACGCAAAGCATCGTGTGTATGATGCAAAGCGTGCTCGGGAACATAATGCACGCTTACTTAAGATGTCATTACCTGAACT...
102,274
NC_011051.1
Capreolus capreolus papillomavirus 1
Erdelyi,K., Balint,A., Dencso,L., Dan,A., Ursu,K.
National Center for Biotechnology Information, NIH
USA
2008-07-15
CcPV-1
Deltapapillomavirus 5
Deltapapillomavirus
Papillomaviridae
dsDNA
8,032
RefSeq
1
Hungary
Hungary
Capreolus capreolus
lesion_tumor
null
null
PRJNA485481
Capreolus capreolus papillomavirus 1, complete genome
GTTAACAATCACAAGACCTTAACCGTTTCTAGAAAGCGGGAAAGATGGTATCAGGTTTCTATAAAAGCTCACACCGCACAAGGTTAGGGATACCATCCCTGGAGAGATCTCTTCGCGTTTTCTGCCTCATGCCAGACAATGCATTCACTTCTCTAAGCTGTCTTTGGTGCAAAAACAAGCTTAAAAGGGTTGATGCTTTGAGATGTGAACTCAAAGATATACAACCTGTAACCCGTGATGGGTTTGTTTTTGCTGCTTGCACTGGTTGCCTGGAGCTGGCTCTATGGATGGAAAGAAATGTATTCCCAGGCATAGTAGTG...
7,812
MT774138.1
Capreolus capreolus papillomavirus 1
Kmetec,J., Kuhar,U., Fajfar,A.G., Vengust,D.Z., Vengust,G.
University of Ljubljana, Veterinary Faculty, Virology Unit
Slovenia
2020-09-16
null
Deltapapillomavirus 5
Deltapapillomavirus
Papillomaviridae
dsDNA
8,032
GenBank
null
Slovenia
Slovenia
Capreolus capreolus
null
2016
null
null
Capreolus capreolus papillomavirus 1 strain 31-16, complete genome
GTTAACAATCACAAGACCTTAACCGTTTCTAGAAAGCGGGAAAGATGGTATCAGGTTTCTATAAAAGCTCACACCGCACAAGGTTAGGGATACCATCCCTGGAGAGATCTCTTCGCGTTTTCTGCCTCATGCCAGACAATGCATTCACTTCTCTAAGCTGTCTTTGGTGCAAAAACAAGCTTAAAAGGGTTGATGCTTTGAGATGTGAACTCAAAGATATACAACCTGTAACCCGTGATGGGTTTGTTTTTGCTGCTTGCACTGGTTGCCTGGAGCTGGCTCTATGGATGGAAAGAAATGTATTCCCAGGCATAGTAGTG...
47,024
MT774139.1
Capreolus capreolus papillomavirus 1
Kmetec,J., Kuhar,U., Fajfar,A.G., Vengust,D.Z., Vengust,G.
University of Ljubljana, Veterinary Faculty, Virology Unit
Slovenia
2020-09-16
null
Deltapapillomavirus 5
Deltapapillomavirus
Papillomaviridae
dsDNA
8,032
GenBank
null
Slovenia
Slovenia
Capreolus capreolus
null
2016
null
null
Capreolus capreolus papillomavirus 1 strain 32-16, complete genome
GTTAACAATCACAAGACCTTAACCGTTTCTAGAAAGCGGGAAAGATGGTATCAGGTTTCTATAAAAGCTCACACCGCACAAGGTTAGGGATACCATCCCTGGAGAGATCTCTTCGCGTTTTCTGCCTCATGCCAGACAATGCATTCACTTCTCTAAGCTGTCTTTGGTGCAAAAACAAGCTTAAAAGGGTTGATGCTTTGAGATGTGAACTCAAAGATATACAACCTGTAACCCGTGATGGGTTTGTTTTTGCTGCTTGCACTGGTTGCCTGGAGCTGGCTCTATGGATGGAAAGAAATGTATTCCCAGGCATAGTAGTG...
47,025
MT774140.1
Capreolus capreolus papillomavirus 1
Kmetec,J., Kuhar,U., Fajfar,A.G., Vengust,D.Z., Vengust,G.
University of Ljubljana, Veterinary Faculty, Virology Unit
Slovenia
2020-09-16
null
Deltapapillomavirus 5
Deltapapillomavirus
Papillomaviridae
dsDNA
8,032
GenBank
null
Slovenia
Slovenia
Capreolus capreolus
null
2014
null
null
Capreolus capreolus papillomavirus 1 strain 37-14, complete genome
GTTAACAATCACAAGACCTTAACCGTTTCTAGAAAGCGGGAAAGATGGTATCAGGTTTCTATAAAAGCTCACACCGCACAAGGTTAGGGATACCATCCCTGGAGAGATCTCTTCGCGTTTTCTGCCTCATGCCAGACAATGCATTCACTTCTCTAAGCTGTCTTTGGTGCAAAAACAAGCTTAAAAGGGTTGATGCTTTGAGATGTGAACTCAAAGATATACAACCTGTAACCCGTGATGGGTTTGTTTTTGCTGCTTGCACTGGTTGCCTGGAGCTGGCTCTATGGATGGAAAGAAATGTATTCCCAGGCATAGTAGTG...
47,026
MT774141.1
Capreolus capreolus papillomavirus 1
Kmetec,J., Kuhar,U., Fajfar,A.G., Vengust,D.Z., Vengust,G.
University of Ljubljana, Veterinary Faculty, Virology Unit
Slovenia
2020-09-16
null
Deltapapillomavirus 5
Deltapapillomavirus
Papillomaviridae
dsDNA
8,032
GenBank
null
Slovenia
Slovenia
Capreolus capreolus
null
2015
null
null
Capreolus capreolus papillomavirus 1 strain 63-15, complete genome
GTTAACAATCACAAGACCTTAACCGTTTCTAGAAAGCGGGAAAGATGGTATCAGGTTTCTATAAAAGCTCACACCGCACAAGGTTAGGGATACCATCCCTGGAGAGATCTCTTCGCGTTTTCTGCCTCATGCCAGACAATGCATTCACTTCTCTAAGCTGTCTTTGGTGCAAAAACAAGCTTAAAAGGGTTGATGCTTTGAGATGTGAACTCAAAGATATACAACCTGTAACCCGTGATGGGTTTGTTTTTGCTGCTTGCACTGGTTGCCTGGAGCTGGCTCTATGGATGGAAAGAAATGTATTCCCAGGCATAGTAGTG...
47,027
MT774142.1
Capreolus capreolus papillomavirus 1
Kmetec,J., Kuhar,U., Fajfar,A.G., Vengust,D.Z., Vengust,G.
University of Ljubljana, Veterinary Faculty, Virology Unit
Slovenia
2020-09-16
null
Deltapapillomavirus 5
Deltapapillomavirus
Papillomaviridae
dsDNA
8,032
GenBank
null
Slovenia
Slovenia
Capreolus capreolus
null
2016
null
null
Capreolus capreolus papillomavirus 1 strain 103-16, complete genome
GTTAACAATCACAAGACCTTAACCGTTTCTAGAAAGCGGGAAAGATGGTATCAGGTTTCTATAAAAGCTCACACCGCACAAGGTTAGGGATACCATCCCTGGAGAGATCTCTTCGCGTTTTCTGCCTCATGCCAGACAATGCATTCACTTCTCTAAGCTGTCTTTGGTGCAAAAACAAGCTTAAAAGGGTTGATGCTTTGAGATGTGAACTCAAAGATATACAACCTGTAACCCGTGATGGGTTTGTTTTTGCTGCTTGCACTGGTTGCCTGGAGCTGGCTCTATGGATGGAAAGAAATGTATTCCCAGGCATAGTAGTG...
47,028
MT774143.1
Capreolus capreolus papillomavirus 1
Kmetec,J., Kuhar,U., Fajfar,A.G., Vengust,D.Z., Vengust,G.
University of Ljubljana, Veterinary Faculty, Virology Unit
Slovenia
2020-09-16
null
Deltapapillomavirus 5
Deltapapillomavirus
Papillomaviridae
dsDNA
8,032
GenBank
null
Slovenia
Slovenia
Capreolus capreolus
null
2014
null
null
Capreolus capreolus papillomavirus 1 strain 84-14, complete genome
GTTAACAATCACAAGACCTTAACCGTTTCTAGAAAGCGGGAAAGATGGTATCAGGTTTCTATAAAAGCTCACACCGCACAAGGTTAGGGATACCATCCCTGGAGAGATCTCTTCGCGTTTTCTGCCTCATGCCAGACAATGCATTCACTTCTCTAAGCTGTCTTTGGTGCAAAAACAAGCTTAAAAGGGTTGATGCTTTGAGATGTGAACTCAAAGATATACAACCTGTAACCCGTGATGGGTTTGTTTTTGCTGCTTGCACTGGTTGCCTGGAGCTGGCTCTATGGATGGAAAGAAATGTATTCCCAGGCATAGTAGTG...
47,029
EF680235.1
Capreolus capreolus papillomavirus 1
Erdelyi,K., Balint,A., Dencso,L., Dan,A., Ursu,K.
CAO, Veterinary Diagnostic Directorate, Mammal Pathology
Hungary
2008-07-01
CcPV-1
Deltapapillomavirus 5
Deltapapillomavirus
Papillomaviridae
dsDNA
8,032
GenBank
1
Hungary
Hungary
Capreolus capreolus
lesion_tumor
null
null
null
Western roedeer papillomavirus 1 isolate CcPV-1, complete genome
GTTAACAATCACAAGACCTTAACCGTTTCTAGAAAGCGGGAAAGATGGTATCAGGTTTCTATAAAAGCTCACACCGCACAAGGTTAGGGATACCATCCCTGGAGAGATCTCTTCGCGTTTTCTGCCTCATGCCAGACAATGCATTCACTTCTCTAAGCTGTCTTTGGTGCAAAAACAAGCTTAAAAGGGTTGATGCTTTGAGATGTGAACTCAAAGATATACAACCTGTAACCCGTGATGGGTTTGTTTTTGCTGCTTGCACTGGTTGCCTGGAGCTGGCTCTATGGATGGAAAGAAATGTATTCCCAGGCATAGTAGTG...
105,089
NC_001463.1
Caprine arthritis encephalitis virus
Saltarelli,M., Querat,G., Konings,D.A., Vigne,R., Clements,J.E.
National Center for Biotechnology Information, NIH
USA
1993-08-02
null
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,189
RefSeq
1
null
null
null
null
null
null
PRJNA485481
Caprine arthritis-encephalitis virus, complete genome
GAGTTCTAGGAGAGTCCCTCCTAGTCTCTCCTCTCCGAGGAGGTACCGAGACCTCAAAATAAAGGAGTGATTGCCTTACTGCCGAGTGGAGAGTGATTACTGAGCGGCCGGTGTATCGGGAGTCGTCCCTTAATCTGTGCAATACCAGAGCGGCTCTCGCAGCTGGCGCCCAACGTGGGGCCCGAGGAGAAGAAAAGAAAGCGGCCCTGAGAACTCGGCTTCTGAAAAAGAGGAAGAGGACAAGTTGCTATAGCAACAAGAGAGAAGAAGTAGAGCAAAGGTCCAGTGGCTCGGAAAAAGAGGAACTGAAACTTCGGGGA...
8,978
KT214469.1
Caprine arthritis encephalitis virus
Wu,J., Li,J., Wang,Z.
Institute of Veterinary Medicine, Xinjiang Academy of Animal Science
China
2016-11-27
Sichuan
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,138
GenBank
null
China
China
Capra hircus
null
1993-05-19
null
null
Caprine arthritis encephalitis virus isolate Sichuan, complete genome
ATTGCCTTACTGCCGAGTGGAGAGTGATTACTGAGCGGCCGGTGTATCGGGAGTCGTCCCTTAATCTGTGCAATACCAGAGCGGCTCTCGCAGCTGGCGCCCAACGTGGGGCCCGAAAAGAAGGAGAAAGGGCCCGAGAACTCTGCTTCTACAAAGAGGAAGAGGCTTCTGAAAAAGAGAAGAAGTAGAGCAAAGGTCCAGTGGCTCGGAAAAAGAGGAACTGAAACTTCGGGGACGCCTGAAGGAGTACGGTAAGTGACTCTGCTGTACGCGGGGCGAGGCAGAGGTTTCCTTCTAAATTGAAAGAGAAGGGTTGCTGC...
79,211
KT749878.1
Caprine arthritis encephalitis virus
Wu,J., Wang,Z., Wang,D., Yang,X.
Institite of Veterinary Medicine
China
2016-11-27
Shandong
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,172
GenBank
null
China
China
Capra hircus
null
1993-03-19
null
null
Caprine arthritis encephalitis virus isolate Shandong, complete genome
ATTGCCTTACTGCCGAGTGGAGAGTGATTACTGAGCGGCCGGTGTATCGGGAGTCGTCCCTTAATCTGTGCAATACCAGAGCGGCTCTCGCAGCTGGCGCCCAACGTGGGGCCCGAAAAGAAGGAGAAAGGGCCCGAGAACTCTACTTCTACAAAAGAGGAAGAAGTCTCTGGAAAAGAGGAAGAAGACAAGCTGCTATAGCAACGGAGAAAAAGAAGTAGAGCAAAGGTCCAGTGGCTCGGAAAAAGAGGAACTGAAACTTCGGGGACGCCTGAAGGAGTACGGTAAGTGACTCTGCTGTACGCGGGGCGAGGCAGAGG...
79,212
KT749879.1
Caprine arthritis encephalitis virus
Wu,J., Li,J., Wang,Z.
Institute of Veterinary Medicine; Xinjiang Academy of Animal Science
China
2016-11-27
Shaanxi
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,163
GenBank
null
China
China
Capra hircus
null
1993-05-13
null
null
Caprine arthritis encephalitis virus isolate Shaanxi, complete genome
ATTGCCTTACTGCCGAGTGGAGAGTGATTACTGAGCGGCCGGTGTATCGGGAGTCGTCCCTTAATCTGTGCAATACCAGAGCGGCTCTCGCAGCTGGCGCCCAACGTGGGGCCCGAAAAGAAGGAGAAAGGGCCCGAGAACTCTGCTTCTACAAAAGAGGAAGAAGTCTCTGGAAAAGAGGAAGAAGACAAGCTGCTATAGCAACGGAGAAAAAGAAGTAGAGCAAAGGTCCAGTGGCTCGGAAAAAGAGGAACTGAAACTTCGGGGACGCCTGAAGGAGTACGGTAAGTGACTCTGCTGTACGCGGGGCAAGGCAGAGG...
79,213
KT749880.1
Caprine arthritis encephalitis virus
Wu,J., Wang,Z., Li,J.
Xinjiang Academy of Animal Science, Institute of Veterinary Science
China
2016-11-27
guizhou
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,118
GenBank
null
China
China
Capra hircus
null
null
null
null
Caprine arthritis encephalitis virus isolate guizhou, complete genome
ATTGCCTTACTGCCGAGTGGAGAGTGATTACTGAGCGGCCGGTGTATCGGGAGTCGTCCCTTAATCTGTGCAATACCAGAGCGGCTCTCGCAGCTGGCGCCCAACGTGGGGCCCGAAAAGAAGGAGAAAGGGCCCGAGAACTCTGCTTCTACAAAAGAGGAAGAAGTCTCTGGAAAAGAGGAAGAAGACAAGCTGCTATAGCAACGGAGAAAAAGAAGTAGAGCAAAGGTCCAGTGGCTCGGAAAAAGAGGAACTGAAACTTCGGGGACGCCTGAAGGAGTACGGTAAGTGACTCTGCTGTACGCGGGGCGAGGCAGAGG...
79,214
KT749881.1
Caprine arthritis encephalitis virus
Wu,J., Wang,Z.
Xinjiang Academy of Animal Science, Institute of Veterinary Medicine
null
2016-11-27
gs-35V
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,171
GenBank
null
China
China
Capra hircus
null
null
null
null
Caprine arthritis encephalitis virus isolate gs-35V, complete genome
ATTGCCTTACTGCCGAGTGGAGAGTGATTACTGAGCGGCCGGTGTATCGGGAGTCGTCCCTTAATCTGTGCAATACCAGAGCGGCTCTCGCAGCTGGCGCCCAACGTGGGGCCCGAAAAGAAGGAGAAAGGGCCCGAGAACTCTGCTTCTACAAAAGAGGAAGAAGTCTCTGGAAAAGAGGAAGAAGACAAGCTGCTATAGCAACGGAGAAAAAGAAGTAGAGCAAAGGTCCAGTGGCTCGGAAAAAGAGGAACTGAAACTTCGGGGACGCCTGAAGGAGTACGGTAAGTGACTCTGCTGTACGCGGGGCGAGGCAGAGG...
79,215
JF502416.1
Caprine arthritis encephalitis virus
Bertolotti,L., Mazzei,M., Puggioni,G., Carrozza,M.L., Dei Giudici,S., Muz,D., Juganaru,M., Patta,C., Tolari,F., Rosati,S.
University of Torino, Animal Productions, Epidemiology and Ecology
Italy
2011-05-21
Fonni
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,148
GenBank
1
Italy: Sardinia
Italy
Ovis aries
null
2003
null
null
Caprine arthritis encephalitis virus isolate Fonni, complete genome
GAGCTCGAAGGAAAGAGTCTCCTAGCCTCTCCTCTCCGAGGAACCCTGTGTTCACAATAAAGGAGTTGAGAGAGATCTTTGGCTGAGCTGGTCGTTGGTATTATCGGCGTTGCTTACTAATCCTGTGCAAAACCAGGGGCAGCGTCGCAGGTGGCGCCCAACGTGGGGCTCGAGCTCAGGAACAGCCTGAGGAGAGACTTTGGAAAAGTCTAAAAAATTGAGGAGAACAGCGATCGCTACAGCTAAGGAAAATGAAAGTAATGGGTCCGCGGACTCTGTTGCTGTAAATAAGCGGAAGTTGCCATAACAACAAGAGAAGA...
99,116
JF502417.1
Caprine arthritis encephalitis virus
Bertolotti,L., Mazzei,M., Puggioni,G., Carrozza,M.L., Dei Giudici,S., Muz,D., Juganaru,M., Patta,C., Tolari,F., Rosati,S.
University of Torino, Animal Productions, Epidemiology and Ecology
Italy
2011-05-21
Volterra
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,152
GenBank
1
Italy: Tuscany
Italy
Ovis aries
null
2004
null
null
Caprine arthritis encephalitis virus isolate Volterra, complete genome
GAGCTCRAAGGAAAGAGTCTCCTAGCCTCTCCTCTCCGRGGAGCCTCGGCTCATAATAAAGGAGTTGAGTGAGATCTTGGCTGAGCTGGTCGTTGGTATTATCGGCGGCGTCTACTAATCCTGTGCAACACCAGGGGCGTCGTCGCAGGTGGCGCCCAGCGTGGGGCACGAGTCTCAGGGGAGAACCTGAGGAGAGACTGAGAAAAGTCTACAGATTCAAGGAGAACAGCGATCGCTTCAGCCGAGAAAATGGAAGTAATGGGGCCGCGGACTCTGTTGCTGTAAATAAGAGGAAGTTGCCATAACAACGAGGAGAGAAG...
99,117
GU120138.1
Caprine arthritis encephalitis virus
Huang,J., Sun,Y., Liu,Y., Xiao,H., Zhuang,S., Sun,Y.H., Huang,J.H., Wang,Y.F., Wang,J.S., Zhuang,S.W.
College of Agriculture & Bioengineering, Tianjin University, Food Science
China
2009-11-17
null
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,065
GenBank
1
China
China
Capra hircus
null
2007-12
null
null
Caprine arthritis encephalitis virus strain Shanxi, complete genome
CCTTACTGCCGAGTGGAGAGTGATTACTGAGCGGCCGGTGTATCGGGAGTCGTCCCTTAATCTGTGCAATACCAGAGCGGCTCTCGCAGCTGGCGCCCAACGTGGGGCCCGAAAAGAAGGAGAAAGGGCCCGAGAACTCTGCTTCTACAAAAGAGGAAGAAGTCTCTGGAAAAGAGGAAGAAGACAAGCTGCTATAGCAACGGAGAAAAAGAAGTAGAGCAAAGGTCCAGTGGCTCGGAAAAAGAGGAACTGAAACTTCGGGGACGCCTGAAGGAGTACGGTAAGTGACTCTGCTGTACGCGGGGCGAGGCAGAGGTTTC...
101,650
GQ381130.1
Caprine arthritis encephalitis virus
Reina,R., Bertolotti,L., Dei Giudici,S., Puggioni,G., Ponti,N., Profiti,M., Patta,C., Rosati,S.
Facolta di Medicina Veterinaria, Produzioni Animali
Italy
2009-09-13
null
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
8,437
GenBank
1
Italy
Italy
Capra hircus
null
2003-09
null
null
Caprine arthritis encephalitis virus strain Seui, complete genome
TGGGAGTCAGACGCTTCAGAGCAGCTGCCTGAGAGCACTCGCTCGGAGGTCTCCTCCTGCGCCGGGAGAATAAAAGCCTGCTTGATTGAGACTACACTGGGCTAGTCTGGGTTATTCTCGGGGGCCGTAAGGTCTTACTACAAGACGCGGTTCTCGCAGGTGGCGCCCAACGTGGGGCTCGACTAGCGGCCGGGGGAAGGCGGCGGCCCGAGAGTAACGAGCAGCCAGCAAGCCGAGAAGGAGAGAGCCGCGGAGACAGGCGGCGGAGCAGCAGAAGGAGAAAGTGAAAGTGCGTCACAGGAAGAAGCTGCCAAGAGAAA...
102,300
AY900630.1
Caprine arthritis encephalitis virus
Qu,J., Guo,W., Xiang,W.
Harbin Veterinary Research Institute, Epidemic Disease Research Lab
null
2005-04-12
null
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
9,186
GenBank
null
null
null
null
null
null
null
null
Caprine arthritis-encephalitis virus strain gansu, complete genome
GAGTTTTTAGGAGAGTTCCCTCCTAGACTTCTCCTCTCCGAGGAGGTACCCGAGACCTCACAATAAAGGAGTGATTGCCTTACTGCCGAGTGGAGAGTGATTACTTGAGCGGCCGGTGTATCGGGAGTCGTCCCTTAATCTGTGCAATACCAGAGCGGCTCTCGCAGCTGGCGCCCAACGTGGGGCCCGAAAAGAAGGAGAAAGGGCCCGAGAACTCTGCTTCTACAAAAGAGGAAGAAGTCTCTGGAAAAGAGGAAGAAGACAAGCTGCTATAGCAACGGAGAAAAAGAAGTAGAGCAAAGGTCCAGTGGCTCGGAAAA...
109,072
AF322109.1
Caprine arthritis encephalitis virus
Gjerset,B., Storset,A.K., Rimstad,E., Gjerset,B.J.
The Norwegian School of Veterinary Science, Pharmacology, Microbiology and Food Hygiene
Norway
2001-01-11
1GA
Caprine arthritis encephalitis virus
Lentivirus
Retroviridae
ssRNA-RT
8,919
GenBank
1
null
null
null
null
null
null
null
Caprine arthritis-encephalitis virus 1GA, complete genome
GTGAGTGCTCTGAGGAGCTCGAAGGAAAGAGTCCTCAGCCTCTCCTCTCCGAGGAGCTTCGGCTCATAATAAAGGAGTGCTTGCTTCAACAGAACTGAGCTGGTCGTGGTTATTATCGGGGACCGAAGTCCCGTGCAACACCGGGGCGGTTCTCGCAGCTGGCGCCCAACGTGGGGCTCGAGTAGCTTGAGAAGCTCGACTGAGATCTGAATCCAAGAGCGACATCAGACAGCAAGAAATGAGAGTAATGAGACCGCGAGCTCTGCTGCTGTAAAAAAGAGGAAGTAGCGGGTTGCCGAGGCAACTGCTCAGAAGAACCA...
111,200
NC_023422.1
Caprine kobuvirus
Oem,J.K., Lee,M.H., Lee,K.K., An,D.J., Oem,J.-K., Kim,S.-H., Kim,Y.-H., Lee,M.-H., Lee,K.-K.
National Center for Biotechnology Information, NIH
USA
2014-02-04
12Q108
Aichivirus C
Kobuvirus
Picornaviridae
ssRNA(+)
8,305
RefSeq
1
South Korea
South Korea
Capra hircus
feces
2012
null
PRJNA485481
Caprine kobuvirus isolate 12Q108, complete genome
TTTGAAAAGGGGGTGGGGGGGGCCTCGGCCCCCTCACCCTCTTTTCCGGTGGCCACGCCCGGGCCACCGATACTTCCCTTCACTCCTTCGGGACTGTTGGGGAGGAACACAACAGGGCTCCCCTGTTTTCCCATTCCTTCCCCCTTTTCCCAACCCCAACCGCCGTATCTGGTGGCGGCAAGACACACGGGTCTTTCCCTCTAAAGCACAATTGTGTGTGTGTCCCAGGTCCTCCTGCGTACGGTGCGGGAGTGCTCCCACCCAACTGTTGTAAGCCTGTCCAACGCGTCGTCCTGGCAAGACTATGACGTCGCATGTTC...
6,703
OR682616.1
Caprine kobuvirus
YuTing,C.
Southwest Minzu University, Department of Animal Husbandry and Veterinary Medicine
China
2023-11-08
Caprine/SWUN/F1/2022
Aichivirus C
Kobuvirus
Picornaviridae
ssRNA(+)
8,152
GenBank
null
China
China
Capra hircus
feces
2022
null
null
Caprine kobuvirus isolate Caprine/SWUN/F1/2022, complete genome
CAGGTGGGGAGGAACACAGGGCCCCCTGTTTTTCCTCTTCCCACTCCCCCTTTTCCCTAACCCCAACCGCCGTATCTGGTGGCGGCAAGACACACGGGTCTTTCCCTCTAAAGCACAAATGTGTGTGTGTCCCAGGTCTCTTGCGCTCGGTGCGGGAGTGCTCCCACCCAACTGTTGTAAGCCTGCCCAACGTGTCGTCCTGGCAAGACTATGACGTCGCATGTTCCGCTGCGGATGCCGACCGGGTAACCGGTTCCCCAGTGTGTGTAGTGCGATCTTCCAGGTTCCCCTGGTTGGCGTTGTCCAGAAACTGCTTCAGG...
11,158
OR682617.1
Caprine kobuvirus
YuTing,C.
Southwest Minzu University, Department of Animal Husbandry and Veterinary Medicine
China
2023-11-08
Caprine/SWUN/F2/2022
Aichivirus C
Kobuvirus
Picornaviridae
ssRNA(+)
8,197
GenBank
null
China
China
Capra hircus
feces
2022
null
null
Caprine kobuvirus isolate Caprine/SWUN/F2/2022, complete genome
GCGGGGTTTGGGGGAGACCACAGGGCCCCCCTGTTTTTCCTCTTCCCACTCCCCCTTTTCCCTAACCCCAACCGCCGTATCTGGTGGCGGCAAGACACACGGGTCTTTCCCTCTAAAGCACAAATGTGTGTGTGTCCCAGGTCCTCCTGCGCTCGGTGCGGGAGTGCTCCCACCCAACTGTTGTAAGCCTGCCCAACGTGTCGTCCTGGCAAGACTATGACGTCGCATGTTCCGCTGCGGATGCCGACCGGGTAACCGGTTCCCCAGTGTGTGTAGTGCGATCTTCCAGGTTCCCCTGGTTGGCGTTGTCCAGAAACTGC...
11,159
OQ808805.1
Caprine kobuvirus
Huang,M., Gan,J., Xu,Z., Guo,Y., Chen,Z., Gao,G.F., Liang,H., Liu,W.J.
Institute for Viral Disease Control and Prevention, China CDC, Department of George Gao
China
2023-07-12
CKoV-China/GCCDC14/2019
Aichivirus C
Kobuvirus
Picornaviridae
ssRNA(+)
8,209
GenBank
null
China
China
Capra hircus
null
2019-08-31
null
null
Caprine kobuvirus isolate CKoV-China/GCCDC14/2019, complete genome
CTCTTTTCCGGTGGCCACGCCCGGGCCACCGATACTTCCCTTCACTCCTTCGGGACTGTTGGGGAGGAACATAACAGGGCTCCCCTGTTTTTCCTCTTCCCATTCCCCCTTTTTCCTAACCCCAACCGCCGTATCTGGTGGCGGTAAGACACACGGGTCTTTCCCTCTAAAGCACAAATGTGTGTGTGTCCCAGGTCCTCCTGCGCTCGGTGCGGGAGTGCTCCCACCCAACTGTTGTAAGCCTGTCCAACGTGTCGTCCTGGCAAGACTATGACGTCGCATGTTCCGCTGTGGATGCCGACCGGGTAACCGGTTCCCCA...
14,714
OP376931.1
Caprine kobuvirus
Yang,C., Abi,K.H., Tang,C., Yang,F.L.
Southwest Minzu University, College of Animal & Veterinary Sciences
China
2023-04-19
CKoV-China/SWUN/B12/2022
Aichivirus C
Kobuvirus
Picornaviridae
ssRNA(+)
8,461
GenBank
null
China
China
Capra hircus
null
2021-06-17
null
null
Caprine kobuvirus isolate CKoV-China/SWUN/B12/2022, complete genome
GGGTGGGGGGGGGGGGGGATACCCTCCCCCCTCACATCCCTTTTCGACGGCGCGCCTCGGCAAGGCCGCCGATACCGACTTGTGCTACCTCGGTACCACATTTCGGGAATAATAATATGCCCGGTGTATGTTTCGGTGTATGTTTGCTTGTTTCTCGCACCGTACCGATCTTCGGGAATCAGAAACCATCACCCCCCTTTCCCCCACCCTTATAATTTACAACGCTGTGCACAGCAGCGGCCGCCAAGGATTAGCCTGGCGGTTATAAAAGGAACCTGGGTCTTTCCCTCTCTAAGCCATAAGGTAGGTTCCCTGTGCCC...
16,607
MT584793.1
Caprine kobuvirus
Abi,K.
State Key Laboratory of Veterinary Etiological Biology, Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences
China
2020-11-07
CKoV-China/SWUN/F11/2019
Aichivirus C
Kobuvirus
Picornaviridae
ssRNA(+)
8,105
GenBank
null
China
China
Capra hircus
null
2019-01-01
null
null
Caprine kobuvirus isolate CKoV-China/SWUN/F11/2019, complete genome
CCCCCTTTTCCCTAACCCCAACCGCCGTATCTGGTGGCGGCAAGACACACGGGTCTTTCCCTCTAAAGCACAAATGTGTGTGTGTCCCAGGTCCTCCTGCGCTCGGTGCGGGAGTGCTCCCACCCAACTGTTGTAAGCCTGTCCAACGTGTCGTCCTGGCAAGACTATGACGTCGCATGTTCCGCTGCGGATGCCGACCGGGTAACCGGTTCCCCAGTGTGTGTAGTGCGATCTTCCAGGTTCCCCTGGTTGGCGTTGTCCAGAAACTGCTTCAGGTAAGTGGGGTGTGCCCAATCCCTGCAAAGGTTGATTCTCTCACC...
46,031
MN604700.1
Caprine kobuvirus
Sobhy,N.M., Armien,A., Wunschmann,A., Goyal,S.M., Mor,S.K.
College of Veterinary Medicine, University of Minnesota, Veterinary Diagnostic Laboratory and Department of Veterinary Population Medicine
USA
2020-06-09
MN1/2018
Aichivirus C
Kobuvirus
Picornaviridae
ssRNA(+)
8,139
GenBank
null
USA
USA
null
feces
2017-12
null
null
Caprine kobuvirus isolate MN1/2018, complete genome
GCCCGTCCCCCTCACCCTCTTTTCCGGTGGCCACGCCCGGGCCACCGATACTTCCCTTCACTCCCTCGGGACTGTTGGGGAGGAACACAACAGGGCTCCCCTGTATTTCCTCTTCCCATTCCCCCTTTCCTAACCCCAACCGCCGTATCTGGTGGCGGTAAGACACACGGGTCTTTCCCTCTAAAGCACAATTGTGTGTGTGTCCCAGGTCCTCCTGCGTTCGGTGCGGGAGTGCTCCCACCCAACTGTTGTAAGCCTGTCCAACGTGTCGTCCTGGCAAGACTATGACGTCGCATGTTCCGCTGTGGATGCCGACCGGG...
49,721
KF793927.1
Caprine kobuvirus
Oem,J.K., Lee,M.H., Lee,K.K., An,D.J., Oem,J.-K., Kim,S.-H., Kim,Y.-H., Lee,M.-H., Lee,K.-K.
Animal and Plant Quarantine Agency, Animal Disease Diagnostic Division
South Korea
2014-01-29
12Q108
Aichivirus C
Kobuvirus
Picornaviridae
ssRNA(+)
8,305
GenBank
1
South Korea
South Korea
Capra hircus
feces
2012
null
null
Caprine kobuvirus isolate 12Q108, complete genome
TTTGAAAAGGGGGTGGGGGGGGCCTCGGCCCCCTCACCCTCTTTTCCGGTGGCCACGCCCGGGCCACCGATACTTCCCTTCACTCCTTCGGGACTGTTGGGGAGGAACACAACAGGGCTCCCCTGTTTTCCCATTCCTTCCCCCTTTTCCCAACCCCAACCGCCGTATCTGGTGGCGGCAAGACACACGGGTCTTTCCCTCTAAAGCACAATTGTGTGTGTGTCCCAGGTCCTCCTGCGTACGGTGCGGGAGTGCTCCCACCCAACTGTTGTAAGCCTGTCCAACGCGTCGTCCTGGCAAGACTATGACGTCGCATGTTC...
91,828
NC_028362.1
Caprine parainfluenza virus 3
Yang,L., Jiang,J.
National Center for Biotechnology Information, NIH
USA
2015-11-12
null
Respirovirus caprae
Respirovirus
Paramyxoviridae
ssRNA(-)
15,618
RefSeq
null
China
China
Capra hircus
null
2013-12-01
null
PRJNA485481
Caprine parainfluenza virus 3 strain JS2013, complete genome
ACCAAACAAGAGAGAAAACCTGTTTGGAAATAAAAATTAACATAATAATTAACTTAGGATCAAAGAACTCTGCCACAAGGTGAGGGGGAAGAGATCCTGAAATTGAAAAAATGCTGAGTTCATTTGATACATTCAGTGCACGGAGACAGGAGAATATAACGAAATCAGCTGGAGGAGCGATAATCCCTGGGCAGAAGAGCACTGTATCTATATTTGTGCTTGGTCCATCAATAACAGATGATAATGACAAGATGGCAATAGCTTTGCTCTTTCTATCCCATTCATTGGATAATGAAAAGCAACATGCACAGCGTGCTGGA...
5,962
MK091103.1
Caprine parainfluenza virus 3
Mao,L., Yang,L., Li,W., Liang,P., Zhang,S., Li,J., Sun,M., Zhang,W., Wang,L., Zhong,C., Liu,M., Jiang,J., Cai,X., Luo,X.
Jiangsu Academy of Agricultural Sciences, Institute of Veterinary Medicine
China
2019-02-26
GS2017-2
Respirovirus caprae
Respirovirus
Paramyxoviridae
ssRNA(-)
15,421
GenBank
1
China
China
Ovis aries
null
2017-04-04
null
null
Caprine parainfluenza virus 3 isolate GS2017-2, complete genome
GAAATTGAAAAAATGCTGAGTTCATTTGATACATTCAGTGCACGGAGACAGGAGAATATAACGAAATCAGCTGGAGGGGCGATAATCCCTGGGCAGAAGAGCACTGTATCTATATTTGTGCTTGGTCCATCAATAACAGATGATAATGACAAGATGGCAATAGCTTTGCTCTTTCTATCCCATTCATTAGATAATGAAAAGCAACATGCACAGCGTGCTGGATTTTTGGTGTCATTACTATCAATGGCTTATGCCAATCCAGAACTATACTTAACAGCAAATGGCAGTAACGCAGATGTTAGATACGTGATATACATGAT...
64,995
MF683167.1
Caprine parainfluenza virus 3
Yang,L., Li,W., Mao,L., Hao,F.
Jiangsu Academy of Agricultural Sciences, Institute of Veterinary Medicine
China
2018-07-14
null
Respirovirus caprae
Respirovirus
Paramyxoviridae
ssRNA(-)
15,613
GenBank
null
China
China
Capra hircus
null
2014-12-05
null
null
Caprine parainfluenza virus 3 strain JSHA2014-1, complete genome
ACCAAACAAGAGAGAAAACCTGTTTGGAAATAAAAATTAACATAATAATTAACTTAGGATCAAAGAACTCCGCCACAAGGCAAGGGGAAAGAGATCCAGAAATTGAAAAAATGCTGAGTTCATTTGATACATTCAGTGCACGGAGACAGGAGAATATAACGAAATCAGCTGGAGGGGCGATAATCCCTGGGCAGAAGAGCACTGTATCTATATTTGTGCTTGGTCCATCAATAACAGATGATAATGACAAGATGGCAATAGCTTTGCTCTTTCTATCCCATTCATTAGATAATGAAAAGCAACATGCACAGCGTGCTGGA...
69,924
MF693177.1
Caprine parainfluenza virus 3
Yang,L., Li,W., Mao,L., Hao,F.
Jiangsu Academy of Agricultural Sciences, Institute of Veterinary Medicine
China
2018-07-14
null
Respirovirus caprae
Respirovirus
Paramyxoviridae
ssRNA(-)
15,604
GenBank
null
China
China
Capra hircus
null
2015-03-01
null
null
Caprine parainfluenza virus 3 strain AHQJ2015-1, complete genome
ACCAAACAAGAGAGAAAACCTGTTTGGAAATAAAAATTAACATAATAATTAACTTAGGATCAAAGAACTCTGCCACAAGGCAAGGGGAAAGAGATCCAGAAATTGAAAAAATGCTGAGTTCATTTGATACATTCAGTGCACGAAGACAGGAGAATATAACGAAATCAGCTGGAGGGGCGATAATCCCTGGGCAGAAGAGCACTGTATCTATATTTGTGCTTGGTCCATCAATAACAGATGATAATGACAAGATGGCAATAGCTTTGCTCTTTCTATCCCATTCATTGGATAATGAAAAGCAACATGCACAGCGTGCTGGA...
69,925
MF693178.1
Caprine parainfluenza virus 3
Yang,L., Li,W., Mao,L., Hao,F.
Jiangsu Academy of Agricultural Sciences, Institute of Veterinary Medicine
China
2018-07-14
null
Respirovirus caprae
Respirovirus
Paramyxoviridae
ssRNA(-)
15,584
GenBank
null
China
China
Capra hircus
null
2016-04-05
null
null
Caprine parainfluenza virus 3 strain JSHA2016, complete genome
AAGAGAGAAAACCTGTTTGGAAATAAAAATTAACATAATAATTAACTTAGGATCAAAGAACTCCGCCACAAGGCAAGGGGAAAGAGATCCAGAAATTGAAAAAATGCTGAGTTCATTTGATACATTCAGTGCACGGAGACAGGAGAATATAACGAAATCAGCTGGAGGGGCGATAATCCCTGGGCAGAAGAGCACTGTATCTATATTTGTGCTTGGTCCATCAATAACAGATGATAATGACAAGATGGCAATAGCTTTGCTCTTTCTATCCCATTCATTAGATAATGAAAAGCAACATGCACAGCGTGCTGGATTTTTGG...
69,926
KT215610.1
Caprine parainfluenza virus 3
Yang,L., Jiang,J.
Jiangsu Academy of Agricultural Sciences, Institute of Veterinary Medicine
China
2015-07-11
null
Respirovirus caprae
Respirovirus
Paramyxoviridae
ssRNA(-)
15,618
GenBank
null
China
China
Capra hircus
null
2013-12-01
null
null
Caprine parainfluenza virus 3 strain JS2013, complete genome
ACCAAACAAGAGAGAAAACCTGTTTGGAAATAAAAATTAACATAATAATTAACTTAGGATCAAAGAACTCTGCCACAAGGTGAGGGGGAAGAGATCCTGAAATTGAAAAAATGCTGAGTTCATTTGATACATTCAGTGCACGGAGACAGGAGAATATAACGAAATCAGCTGGAGGAGCGATAATCCCTGGGCAGAAGAGCACTGTATCTATATTTGTGCTTGGTCCATCAATAACAGATGATAATGACAAGATGGCAATAGCTTTGCTCTTTCTATCCCATTCATTGGATAATGAAAAGCAACATGCACAGCGTGCTGGA...
86,727
NC_008302.1
Capsicum chlorosis virus
Knierim,D., Blawid,R., Maiss,E.
National Center for Biotechnology Information, NIH
USA
2006-08-25
AIT
Orthotospovirus capsiciflavi
Orthotospovirus
Tospoviridae
ssRNA(+/-)
8,912
RefSeq
1
Thailand
Thailand
Solanum lycopersicum
null
null
null
PRJNA485481
Capsicum chlorosis virus segment L, complete sequence
AGAGCAATCGAGCAACAAATTAAAGTATTCTAAACTCAGTTTCAATATTAATAAGAAATACTATTTCTGACACTAATGTCTGGTTTAGAACTTGCAACTAGACTGCATCCTATTATGATGCAATCTGTTTTTAAACCTTTTCCAAGAATTATACAATTGGCAGCTTTGCGCTCTTTTCTTGTTTTAGAATCTGTACTAAATATTCTATTATCGGTTATTATACTATTGCCCATAAATTATTTACATTTTATTCTTGACCTAGAGAAGTAGAGTCTGATCCTAAAAACTTATTGAAAACCTCATGCAGTTCTAATCTTTTA...
8,073
OQ597167.1
Capsicum chlorosis virus
Sun,S.-R., Wang,Z.-Q., Liang,Q.-G., Qin,Y.-X., Chen,J.-L., Wang,G., Chang,H.-L., Wang,Q.-N., Gao,S.-J.
Guangdong Academy of Sciences, Institute of Nanfan & Seed Industry
China
2023-05-06
CaCV-AC
Orthotospovirus capsiciflavi
Orthotospovirus
Tospoviridae
ssRNA(+/-)
8,913
GenBank
null
China
China
Ageratum conyzoides
plant leaf
2022-04
null
null
Capsicum chlorosis virus isolate CaCV-AC segment L, complete sequence
AGAGCAATCGAGCAACAAATTAAAGTATTCTAAACTCAGTCTCATTATTATTAAGAAATACTATTTCTGACTCTATTGTCTGGTTTAGAATTCATAACTAGACAGCAACCTGATATAATGTGTACTATTTTTATCCTTTTTAAGAGAATAGTGCATTTGTTGATTTCATGCTCTTTTCTTGCTTTCGAACTTATATTATGTGTTCTATTGTTAATTCTTTTAGTCTCGCCCATAAATTGTCTACATTTTATTCTTGGGTTGGAGAATCAGAGCTTGATCCTAAAAACTTGTTAAAAACATCATGCAATTCCAGTCTTTTG...
16,152
KY994105.1
Capsicum chlorosis virus
Jia,Z., Gao,X., Wu,B., Tao,H., Liu,Y.
Yunnan Agricultural University, College of Agronomy and Biotechnology
China
2020-01-01
CaCV-HLS-Th
Orthotospovirus capsiciflavi
Orthotospovirus
Tospoviridae
ssRNA(+/-)
8,912
GenBank
null
Thailand
Thailand
Hymenocallis littoralis
null
2014-08-20
null
null
Capsicum chlorosis virus isolate CaCV-HLS-Th segment L, complete sequence
AGAGCAATCGAGCAACAAATTAAAGTATTCTAAACTCAGTCTCATTATTATTAAGAAATACTATTTCCGACTCTATTGTCTGGTTTAGAATTCATAACTAGACAGCAACCTGATATAATATAAACTATTTTTATCCTTTTTTAAAAAATAGTGCATTTGTTGATTTCATGCTCTTTCCTTGCTTTCGAACTTATATTATGTATTCTATTGTTAATCCTTTTAGTCTCGCCCATGAATTGTCTACATTTTATTCTTGGGTTGAAGAATCAGAGCTTGATCCTAAAAACTTATTAAAAACATCATGCAATTCCAATCTTTTG...
57,053
KX108865.1
Capsicum chlorosis virus
Warin,N., Kitpalit,M., Seepiban,C., Bhunchoth,A., Gajanandana,O., Charoenvilaisiri,S., Chatchawankanphanich,O.
National Science and Technology Development Agency, Kasetsart University, National Center for Genetic Engineering and Biotechnology
Thailand
2016-12-27
NRA
Orthotospovirus capsiciflavi
Orthotospovirus
Tospoviridae
ssRNA(+/-)
8,913
GenBank
null
Thailand: Nakhon Ratchasima
Thailand
Arachis hypogaea
null
2008-01-20
null
null
Capsicum chlorosis virus isolate NRA segment L, complete sequence
AGAGCAATCGAGCAACAAATTAAAGTATTCTAAACTCAGTCTCATTATTGTTAAGAAATACTATTTCTGACTCTATTGTCTGGTTTAGAATTCATAACTAGACAGCAACCTGATATACTATAAACTATTTTTATCCTTTTTAAGAGAATAGTGCATTTGTTGATTTCATGCTCTTTCCTTGCTTTCGAACTTATACTATGTATTCTATTGTTAATCCTTTTAGTCTCGCCCATGAATTGTCTACATTTTATTCTTGAGTTAAAGAATCAGAGCTTGATCCTAAAAACTTATTAAAAACATCATGCAATTCCAATCTTTTG...
78,874
KT876916.1
Capsicum chlorosis virus
Haokip,B., Alice,D., Nagendran,K., Malathi,V., Renuka,P., Manoranjitham,S., Karthikeyan,G.
Tamil Nadu Agricultural University, Department of Plant Pathology
India
2016-06-27
CaCV-TN-CBE
Orthotospovirus capsiciflavi
Orthotospovirus
Tospoviridae
ssRNA(+/-)
8,913
GenBank
null
India: Tamil Nadu
India
Capsicum
null
2014-12-20
null
null
Capsicum chlorosis virus isolate CaCV-TN-CBE segment L, complete sequence
AGAGCAATCGAGCAACAAATTAAAGTATTCTAAACTCAGTCTCATTATTGCTAAGAAATACTATTTCTGACTCTATTGTCTGGTTTAGAATTTATAACTAGACAGCAACCTGATATAATGTGCACTATTTTTATCCTTTTCAAGAGGATAGTGCATTTGTTGATTTCATGCTCTTTTCTTGCTTCCGAACTTATACTATGTATTCTATTGTTAATCCCTTTAGTCTCGCCCATGAATTGTCTACATTTTATTCTTGGGTTAGAGAATCAGAGCTTGATCCTAAAAACTTATTAAAAACATCATGCAATTCCAATCTTTTG...
81,526
KM589493.1
Capsicum chlorosis virus
Widana Gamage,S., Persley,D.M., Higgins,C.M., Dietzgen,R.G.
The University of Queensland, Queensland Alliance for Agriculture and Food Innovation
Australia
2015-01-13
Qld-3432
Orthotospovirus capsiciflavi
Orthotospovirus
Tospoviridae
ssRNA(+/-)
8,913
GenBank
1
Australia
Australia
Capsicum annuum
null
2013-10
null
null
Capsicum chlorosis virus isolate Qld-3432 segment L, complete sequence
AGAGCAATCGAGCAACAAATTAAAGTATTCTAAACTCAGTCTCATTATTATTAAGAAATACTATTTCTGACTCTATTGTCTGGTTTAGAATTCATAACTAGACAGCAACCTGATATAATATGAACTATTTTTATCCTTTTTAAGAGAATAGTGCATTTGTTGATTTCATGCTCTTTCTCTGCTTTCGAACTTATATTATCTATTCTATTGTTAATCCCTTTAGTCTCGCCCATGAATTGTCTACATTTTATTCTTGGGTTGAAGAATCAGAACTCGATCCTAAAAACTTATTAAAAACATCATGCAATTCCAATCTTTTG...
88,283
KC953853.1
Capsicum chlorosis virus
Zheng,Y.X., Chen,C.C., Jan,F.J., Zheng,Y.-X., Chen,C.-C., Jan,F.-J.
National Chung Hsing University, Department of Plant Pathology
null
2013-08-12
Ph
Orthotospovirus capsiciflavi
Orthotospovirus
Tospoviridae
ssRNA(+/-)
8,916
GenBank
1
Taiwan
Taiwan
Phalaenopsis sp.
null
2002-11
null
null
Capsicum chlorosis virus isolate Ph segment L, complete sequence
AGAGCAATCGAGCAACAAATTAAAGTATTCTAAACTCAGTCTCATTATTGTTAAGAAATACTATTTCTGACTCTATTGTCTGGTTTAGAACTCATAACTAGACAGCAACCTGATATAATATGGACTATTTTTATCCTTTTTAGGAGAATAGTGCATTTGTTGATTTCATGCTCTTTCTTTGCTTTCGAACTTATATTATGTATGCTATTGTTAATCCTTTTAGTCTCGCCCATGAATTGTCTACATTTTATTCTTGGGTTAGAGAATCAGAGCTTGATCCTAAAAACTTATTAAAAACATCATGCAATTCCAATCTTTTG...
93,514
GU199334.1
Capsicum chlorosis virus
Kunkalikar,S.R., Sudarsana,P., Rajagopalan,P., Zehr,U.B., Ravi,K.S., Rajagopalan,P.A., Usha,B.Z.
Maharashtra Hybrid Seeds Co Ltd., Molecular Virology
India
2010-07-11
CaCV-Ch-Har
Orthotospovirus capsiciflavi
Orthotospovirus
Tospoviridae
ssRNA(+/-)
8,912
GenBank
1
India
India
Capsicum annuum
null
null
null
null
Capsicum chlorosis virus isolate CaCV-Ch-Har segment L, complete sequence
AGAGCAATCGAGCAACAAATTAAAGTATTCTAAACTCAGTCTCATTATTAGTTAGAAATACTATTTCTGACTCTATTGTCTGGTTTAGAATTCATAACTAGACAGCAACCTGATATAATATGAACTATTTTTATCCTTTTTAAAAGAATAGTGCATTTGTTGATTTCATGCTCTTTCCCTGCTTTCGAACTTATATTATGTATTCTATTGTTTATCCTTTTAGTCTCGCCCATGAATTGTCTACATTTTATTCTCGGGTTAGAGAATCAGAGCTTGATCCTAAAAACTTATTGAAAACATCATGCAATTTTAATCTTTTG...
100,801
DQ256124.1
Capsicum chlorosis virus
Knierim,D., Blawid,R., Maiss,E.
Plant Pathology and Plant Diseases, University Hannover
Germany
2006-08-14
AIT
Orthotospovirus capsiciflavi
Orthotospovirus
Tospoviridae
ssRNA(+/-)
8,912
GenBank
1
Thailand
Thailand
Solanum lycopersicum
null
null
null
null
Capsicum chlorosis virus segment L, complete sequence
AGAGCAATCGAGCAACAAATTAAAGTATTCTAAACTCAGTTTCAATATTAATAAGAAATACTATTTCTGACACTAATGTCTGGTTTAGAACTTGCAACTAGACTGCATCCTATTATGATGCAATCTGTTTTTAAACCTTTTCCAAGAATTATACAATTGGCAGCTTTGCGCTCTTTTCTTGTTTTAGAATCTGTACTAAATATTCTATTATCGGTTATTATACTATTGCCCATAAATTATTTACATTTTATTCTTGACCTAGAGAAGTAGAGTCTGATCCTAAAAACTTATTGAAAACCTCATGCAGTTCTAATCTTTTA...
108,035
MT013200.1
Capsicum frutescens endornavirus 1
Escalante,C., Alcala-Briseno,R.I., Okada,R., Valverde,R.A.
1991, Plant Pathology and Crop Physiology
USA
2020-12-19
LA-A
Capsicum frutescens endornavirus 1
null
Endornaviridae
dsRNA
14,880
GenBank
null
USA
USA
Capsicum frutescens
plant leaf
2015-11-25
null
null
Capsicum frutescens endornavirus 1 isolate LA-A, complete genome
TCAAATAAAATAAAAAGGTATGACTACTAAACTAAGTAGACCTTTTTCTTTAAGTTTACTGGGCGGCTCTCGCCTCCCAAAAACTCAAACTCTTCACGGGTTCACTGGCAACAGTGTACCCGTGAAGAAAATTACAAAGAAAAATGATTGCTCTGCCAGAAAGGCGTTTCGGCAGTGCAAATTCAAATTTAAGATAAACAAAACAAAAACCATTTGCCCTGCAGTGATGTCACACAGGTTGGATGAAGAACTAGAATTTGTTCAATTTGGGCCAGAAGAATGTGTGCCTGATTTGAACAAAGTAGATATAAGGACAATTA...
45,093
MT013201.1
Capsicum frutescens endornavirus 1
Escalante,C., Alcala-Briseno,R.I., Okada,R., Valverde,R.A.
1991, Plant Pathology and Crop Physiology
USA
2020-12-19
LA-B
Capsicum frutescens endornavirus 1
null
Endornaviridae
dsRNA
14,861
GenBank
null
USA
USA
Capsicum chinense
plant leaf
2016-12-17
null
null
Capsicum frutescens endornavirus 1 isolate LA-B, complete genome
TAAAAAGGTATGACTACTAAACTAAGTAGACCTTTTTCTTTAAGTTTACTGGGCGGCTCTCGCCTCCCAAAAACTCAAACTCTTCACGGGTTCACTGGCAACAGTGTACCCGTGAAGAAAATTACAAAGAAAAATGATTGCTCTGCCAGAAAGGCGTTTCGGCAGTGCAAATTCAAATTTAAGATAAACAAAACAAAAACCATCTGCCCTGCAGTGATGTCACACAGGTTGGATGAAGAACTAGAATTTGTTCAATTTGGGCCAGAAGAATGTGTGCCTGATTTGAACAAAGTAGATATAAGGACAATTAGAAATATGAT...
45,094
MT013202.1
Capsicum frutescens endornavirus 1
Escalante,C., Alcala-Briseno,R.I., Okada,R., Valverde,R.A.
1991, Plant Pathology and Crop Physiology
USA
2020-12-19
LA-C
Capsicum frutescens endornavirus 1
null
Endornaviridae
dsRNA
14,876
GenBank
null
USA
USA
Capsicum chinense
plant leaf
2015-11-25
null
null
Capsicum frutescens endornavirus 1 isolate LA-C, complete genome
GTAAATAAAATAAAAAGGTATGACTACTAAACTAAGTAGACCTTTTTCTTTAAGTTTACTGGGCGGCTCTCGCCTCCCAAAAACTCAAACTCTTCGCGGGTTCACTGGAAACAGTGTACCCGTGAAGAAAATTACAAAGAAAAATGATTGCTCTGCCAGAAAGGCGTTCCGGCAGTGCAAATTCAAATTTAAAATAAATAAAACAAAAACCATCTGTCCTGCGGTGATGTCACACAGGTTGGATGAAGAACTAGAATTTGTTCAATTTGGGCCAGAAGAATGTGTGCCTGATTTGAACAAAGTGGATATAAGGACAATTA...
45,095
MT013203.1
Capsicum frutescens endornavirus 1
Escalante,C., Alcala-Briseno,R.I., Okada,R., Valverde,R.A.
1991, Plant Pathology and Crop Physiology
USA
2020-12-19
LA-D
Capsicum frutescens endornavirus 1
null
Endornaviridae
dsRNA
14,872
GenBank
null
USA
USA
Capsicum baccatum
plant leaf
2017-05-02
null
null
UNVERIFIED: Capsicum frutescens endornavirus 1 isolate LA-D, complete genome
GTAAATAAAATAAGAAGGTATGACTACTAAGTTAAGTAGGCCTTTTTCTTTAAGTTTACTGGGTGGCTCGCGCCTCCCAAAAACTCAAACTCTTCACGGGTACACTGGAAACAGTGTGCCCGTGAAGAAAATTACAAAGAAAAATGATTGCTCTGCCAGAAAGGCTTTTCGACAGAGCAAATTTAAATTTAAAATAAATAAAAGCAAAACAATATGCCCTGCAGTGATGTCACACAGGTTGGATGAAGAACTAGAATTTGTTCAATTTGGGCCAGAAGAGTGTGTACCTGATTTGAACAAAGTGGACATAAGAACAATTA...
45,096
MN175322.1
Capsicum frutescens endornavirus 1
Velez-Olmedo,J., Melo,F.L., Velez-Zambrano,S., Resende,R.O.
Universidade de Brasilia, Biologia Celular
Brazil
2020-03-02
MC7
Capsicum frutescens endornavirus 1
null
Endornaviridae
dsRNA
14,846
GenBank
null
Ecuador
Ecuador
Capsicum annuum
plant leaf
2017-12
null
null
Capsicum frutescens endornavirus 1 isolate MC7, complete genome
ATGACTACTAAACTAAGTAGACCTTTTTCTTTAAGTTTACTGGGTGGCTCTCGCCTCCCAAAAACTCAAACTCTTCACGGGTCCACTGGAAACAGTGTACCCGTGAAGAAAATTACAAAGAAAAATGATTGCTCTGCCAGAAAGGCGTTTCGGCAGTGCAAATTCAAATTTAAAATAAACAAAACTAAAACCATCTGTCCTGCAGTGATGTCACACAGGTTGGATGAAGAACTAGAATTTGTTCAATTTGGGCCAGAAGAATGTGTGCCGGATCTAAACAAAGTGGATATAAGAACAATTAGAAATATGATGTTGCTATT...
53,716
MK722363.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
31,920
GenBank
null
Switzerland
Switzerland
Morelia spilota
lung
2015
null
null
Carpet python nidovirus 1 strain F17-0003, complete genome
AGCTGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCACATCTGCCGATCAAGTCAACTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCG...
50,491
MK722364.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,604
GenBank
null
Switzerland
Switzerland
Morelia viridis
liver, abdominal cavity
2016
null
null
Carpet python nidovirus 1 strain F16-11, complete genome
CTTGCTCAAGACTCGTAAAACAGTCTCTACCCAGATATTCTGCGAAAGTAGAAATCACTCAATCTTTCTCCCATAGCTACACCGAGAACAGGATAACCCCGAAAGGGGCATCCTGCGGGTAGCTCTCTGAGCGTGCCAGTAGATATCTTCACCGACTCTGCTGGGCGTATCGGAACCAGTCCGTCCCAAAGTCCGCAACCATCCAAGTAGCTCGAACGAGCGAAAGGATAGGGAGTACCTCCTTAGTAGGCCTCAGCCGAAAAGGGTGGGAAACAGCGGCGAGGCCCTTGTGGCCTGACCGTAGAAACGACCTGGTAGTC...
50,492
MK722365.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
32,393
GenBank
null
Switzerland
Switzerland
Morelia viridis
null
2016
null
null
Carpet python nidovirus 1 strain F16-37, complete genome
AGCTGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCACATCTGCCGATCAAGTCAACTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCGGCCACCGCTTCTGCATCAACACCTGCCCAAAAACAAGGCAGCTATGCAGCG...
50,493
MK722366.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
34,320
GenBank
null
Switzerland
Switzerland
Morelia viridis
null
2017
null
null
Carpet python nidovirus 1 strain F17-605-7, complete genome
TATACAGTGATCCTGTATTGAAAAACTCTCTCTTTTTCAACCAACTTAACCAGTTGTTTGACCGCCTGCACAGTGGGCACTTGAGTATATTTTTCATATCCCCAAACAGTTTAGATCCGTCCAATTATTAAACAAACAAAACAATTGAAATATTTTATTTTTATTGGCAGAGTAGTTAACTGCTTGTTTGTCAATTGTGTACCAGCACACCAACCCCTTGCCAACCTCCACTCAGAGCCCAGGATATCCCCGAAAGGGGCTTCCTGCTGGTGTGAGCTCTTGGCCCCACCCCTCTCAAGACTCGTAAAACAGTCTCTACC...
50,494
MK722367.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,604
GenBank
null
Switzerland
Switzerland
Morelia viridis
null
2017
null
null
Carpet python nidovirus 1 strain F17-605-8, complete genome
CCCGCTCAAGACTCGTAAAACAGTCTCTACCCAGATATTCTGCGAAAGTAGAAATCACTCAATCTTTCTCCCATAGCTACACCGAGAACAGGATAACCCCGAAAGGGGCATCCTGCGGGTAGCTCTCTGAGCGTGCCAGTAGATATCTTCACCGACTCTGCTGGGCGTATCGGAACCAGTCCGTCCCAAAGTCCGCAACCATCCAAGTAGCTCGAACGAGCGAAAGGATAGGGAGTACCTCCTTAGTAGGCCTCAGCCGAAAAGGGTGGGAAACAGCGGCGAGGCCCTTGTGGCCTGACCGTAGAAACGACCTGGTAGTC...
50,495
MK722368.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,620
GenBank
null
Switzerland
Switzerland
Morelia spilota
null
2017
null
null
Carpet python nidovirus 1 strain F17-605-9, complete genome
CGGACTCAAGACTCGTAAAACAGTCTCTACCCAGATATTCTGCGAAAGTAGAAATCACTCAATCTTTCTCCCATAGCTACACCGAGAACAGGATAACCCCGAAAGGGGCATCCTGCGGGTAGCTCTCTGAGCGTGCCAGTAGATATCTTCACCGACTCTGCTGGGCGTATCGGAACCAGTCCGTCCCAAAGTCCGCAACCATCCAAGTAGCTCGAACGAGCGAAAGGATAGGGAGTACCTCCTTAGTAGGCCTCAGCCGAAAAGGACGGGAAACAGCGGCGAGGCCCTTGTGGCCTGACCGTAGAAACGACCTGGTAGTC...
50,496
MK722369.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,620
GenBank
null
Switzerland
Switzerland
Morelia viridis
null
2017
null
null
Carpet python nidovirus 1 strain F17-605-10, complete genome
CCGTCTCAAGACTCGTAAAACAGTCTCTACCCAGATATTCTGCGAAAGTAGAAATCACTCAATCTTTCTCCCATAGCTACACCGAGAACAGGATAACCCCGAAAGGGGCATCCTGCGGGTAGCTCTCTGAGCGTGCCAGTAGATATCTTCACCGACTCTGCTGGGCGTATCGGAACCAGTCCGTCCCAAAGTCCGCAACCATCCAAGTAGCTCGAACGAGCGAAAGGATAGGGAGTACCTCCTTAGTAGGCCTCAGCCGAAAAGGACGGGAAACAGCGGCGAGGCCCTTGTGGCCTGACCGTAGAAACGACCTGGTAGTC...
50,497
MK722370.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,732
GenBank
null
Switzerland
Switzerland
Python anchietae
null
2017
null
null
Carpet python nidovirus 1 strain F17-605-12, complete genome
GGGGATTGTATATATATAATATACCTCCAGACAGTGATCCTGTATTGAAAAACTCTCTTTTTCAACCAACTTAACCAGTTGTTTGACCGCCTGCACAGTGGGCACTTGAGTATATTTTTCATATCCCCAAACAGTTTAGATCCGTCCAATTGTTAAACAAACAAAACAATTGAAATATTTTATTTTTATTGGCAGAGTAGTTAACTGCTTGTTTGTCAATTGTGTACCAGCACACCAACCCCTTGCCAACCTCCACTCAGAGCCCAGGACATCCCCGAAAGGGGCTTCCTGCTGGTGTGAGCTCTTGGCCCCACCCCTCT...
50,498
MK722371.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
32,319
GenBank
null
Switzerland
Switzerland
Python regius
null
2017
null
null
Carpet python nidovirus 1 strain F17-605-16, complete genome
CCTGTATTGAAAAACTCTCTTTTTCAACCAACTTAACCAGTTGTTTGACCGCCTGCACAGTGGGCACTTGAGTATATTTTTCATATCCCCAAACAGTTTAGATCCGTCCAATTGTTAAACAAACAAAACAATTGAAATATTTTATTTTTATTGGCAGAGTAGTTAACTGCTTGTTTGTCAATTGTGTACCAGCACACCAACCCCCGTAAAACAGTCTCTACCCAGATATTCTGCGAAAGTAGAAATCACTCAATCTTTCTCCCATAGCTACACCGAGAACAGGATAACCCCGAAAGGGGCATCCTGCGGGTAGCTCTCTG...
50,499
MK722373.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
32,498
GenBank
null
Switzerland
Switzerland
Morelia viridis
null
2017
null
null
Carpet python nidovirus 1 strain F17-700-14, complete genome
CGTATATATATAATATACCTCCAGACAGTGATCCTGTATTGAAAATCTCTCTTTTTCAACCAACTTAACCAGTTGTTTGACCGCCTGCACAGTGGGCACTTGAGTATATTTTTCATATCCCCAAACAGTTTAGATCCGTCCAATTGTTAAACAAACAAAACAATTGAAATATTTTATTTTTATTGGCAGAGTAGTTAACTGCTTGTTTGTCAATTGTGTACCAGCACACCAACCCCTTGCCAACCTCCACTCAGAGCCCAGGACATCCCCGAAAGGGGCTTCCTGCTGGTGTGAGCTCTTGGCCCCACCCCTCTCAAGAC...
50,501
MK722374.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,200
GenBank
null
Switzerland
Switzerland
Python regius
null
2017
null
null
Carpet python nidovirus 1 strain F17-700-16, complete genome
CCTCAAGACTCGTAAAACAGTCTCTACCCAGATATTCTGCGAAAGTAGAAATCACTCAATCTTTCTCCCATAGCTACACCGAGAACAGGATAACCCCGAAAGGGGCATCCTGCGGGTAGCTCTCTGAGCGTGCCAGTAGATATCTTCACCGACTCTGCTGGGCGTATCGGAACCAGTCCGTCCCAAAGTCTGCAACCATCCAAGTAGCTCGAACGAGCGAAAGGATAGGGAGTACCTCCTTAGTAGGCCTCAGCCGAAAAGGATGGGAAACAGCAGCGAGGCCCTTGTGGCCTGACCGTAGAAACGACCTGGTAGTCGCT...
50,502
MK722375.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,531
GenBank
null
Switzerland
Switzerland
Python regius
null
2017
null
null
Carpet python nidovirus 1 strain F17-750-56, complete genome
GCGGAGAGGTATATTGTATATATATAATATACCTCCAGACAGTGATCCTGTATTGAAAAACTCTCTTTTTCAACCAACTTAACCAGTTGTTTGACCGCCTGCACAGTGGGCACTTGAGTATATTTTTCATATCCCCAAACAGTTTAGATCCGTCCAATTATTAAACAAACAAAACAATTGAAATATTTTATTTTTATTGGCAGAGTAGTTAACTGCTTGTTTGTCAATTGTGTACCAGCACACCAACCCCTTGCCAACCTCCACTCAGAGCCCAGGACATCCCCGAAAGGGGCTTCCTGCTGGTGTGAGCTCTTGGCCCC...
50,503
MK722376.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,275
GenBank
null
Switzerland
Switzerland
Morelia viridis
liver, abdominal cavity
2018
null
null
Carpet python nidovirus 1 strain F18-15-liv, complete genome
GAATATTGTATATATATAATATACCTCCAGACAGTGATCCTGTATTGAAAAACTCTCTTTTTCAACCAACTTAACCAGTTGTTTGACTGCCTGCACAGTGGGCACTTGAGTATATTTTTCATATCCCCAAACAGTTTAGATCCGTCCAATTGTTAAACAAACAAAACAATTGAAATATTTTATTTTTATTGGCAGAGTAGTTAACTGCTTGTTTGTCAATTGTGTACCAGCACACCAACCCCTTGCCAACCTCCACTCAGAGCCCAGGACATCCCCGAAAGGGGCTTCCTGCTGGTGTGAGCTTTTGGCCCCACCCCTCT...
50,504
MK722377.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,550
GenBank
null
Switzerland
Switzerland
Morelia viridis
null
2018
null
null
Carpet python nidovirus 1 strain F18-15-snt, complete genome
AGGTCCGGGGTCATAGAGGTATATTGTATATATATAATATACCTCCAGACAGTGATCCTGTATTGAAAAACTCTCTTTTTCAACCAACTTAACCAGTTGTTTGACTGCCTGCACAGTGGGCACTTGAGTATATTTTTCATATCCCCAAACAGTTTAGATCCGTCCAATTGTTAAACAAACAAAACAATTGAAATATTTTATTTTTATTGGCAGAGTAGTTAACTGCTTGTTTGTCAATTGTGTACCAGCACACCAACCCCTTGCCAACCTCCACTCAGAGCCCAGGACATCCCCGAAAGGGGCTTCCTGCTGGTGTGAGC...
50,505
MK722378.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
31,149
GenBank
null
Switzerland
Switzerland
Morelia viridis
null
2018
null
null
Carpet python nidovirus 1 strain F18-152-21, complete genome
GACGAACTCGAAGACCTCGCACTCACCACACCATTCAATCCAGTCCTAGGAGAGACAACACCAATTTACTCACAACTCGTAGGGAAAAACCGTTACTTCAACGGCGAGTTCACCACAAGCGGAATCGGGAGACAGGTCACCATCATTCTCACCGACGAAACCACCGACGAGGGTTTACAACAGCAAAATCTTTTAAAAATGTTACCTAATAACCGAGGAGTCATAAAAACTCAAAGAAAAAGAGAAGACGGAGTAACTGCAGGCACCAACATCTGGATGCCACTTAAAGTCAGCGAAACAGTCAACATCGGAAAGATCTG...
50,506
MK722379.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
34,320
GenBank
null
Switzerland
Switzerland
Morelia viridis
liver, abdominal cavity
2015
null
null
Carpet python nidovirus 1 strain S15-1547, complete genome
TATATAGTGATCCTGTATTGAAAAACTCTCTCTTTTTCAACCAACTTAACCAGTTGTTTGACCGCCTGCACAGTGGGCACTTGAGTATATTTTTCATATCCCCAAACAGTTTAGATCCGTCCAATTATTAAACAAACAAAACAATTGAAATATTTTATTTTTATTGGCAGAGTAGTTAACTGCTTGTTTGTCAATTGTGTACCAGCACACCAACCCCTTGCCAACCTCCACTCAGAGCCCAGGATATCCCCGAAAGGGGCTTCCTGCTGGTGTGAGCTCTTGGCCCCACCCCTCTCAAGACTCGTAAAACAGTCTCTACC...
50,507
MK722380.1
Carpet python nidovirus 1
Dervas,E., Hepojoki,J., Smura,T., Praehauser,B., Windbichler,K., Bluemich,S., Ramis,A., Hetzel,U., Kipar,A.
University of Helsinki, Medicum, Department of Virology
Finland
2020-05-13
null
Carpet python nidovirus 1
null
null
ssRNA(+)
33,063
GenBank
null
Switzerland
Switzerland
Aspidites ramsayi
lung
2015
null
null
Carpet python nidovirus 1 strain F16-0171, complete genome
ATATAATATACCTCCAGACAGTGATCCTGTATTGAAAAACTCTCTTTTTCAACCAACTTAACCAGTTGTTTGACCGCCTGCACAGTGGGCACTCGAGTATATTTTTCATATCCCCAAACAGTTTAGATCCGTCCAATTGTTAAACAAACAAAACAATTGAAATATTTTATTTTTATTGGCAGAGTAGTTAACTGCTTGTTTGTCAATTGTGTACCAGCACACCAACCCCTTGCCAACCTCCACTCAGAGCCCAGGACATCCCCGAAAGGGGCTTCCTGCTGGTGTGAGCTCTTGGCCCCACCCCTCTCAAGACTCGTAAA...
50,508
NC_038320.1
Carrot necrotic dieback virus
Menzel,W., Vetten,H.J.
National Center for Biotechnology Information, NIH
USA
2018-08-24
null
Sequivirus carotae
Sequivirus
Secoviridae
ssRNA(+)
9,905
RefSeq
1
Germany
Germany
Daucus carota
null
2006
null
PRJNA485481
Carrot necrotic dieback virus strain Anthriscus, complete genome
GTTAAAAGCGATTTCGTTCTGTTTTGAATTCATTCTCAATTCTCTCAATTCTCAACTCAACTTCCCGAAATTTCCTACATATCACCGCCGTGCAAGTCGGCCCCTCTTTCGAGGCGATAAAGGAATTTCTTTCTTCTTCTTATCTATCTCTATTTTCAAGATTTGATAACTCAACACACTGCAACACAATGTCTGCTCCAAGCAAAAGCACTGTACGATTAGTAGATGGAATTAATATTAATGATCCCACTGCCACAGCATTGGCTGCTGCCAATGGACTGTGGGGCGATGTTGAAAACGCTTCCACGTGCATGTACAAT...
4,026
OR607773.1
Carrot necrotic dieback virus
Knierim,D., Margaria,P., Menzel,W., Winter,S.
Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures, Plant Virus Department
Germany
2023-10-31
DSMZ PV-1192
Sequivirus carotae
Sequivirus
Secoviridae
ssRNA(+)
10,048
GenBank
null
Germany
Germany
Helleborus
null
null
null
null
Carrot necrotic dieback virus isolate DSMZ PV-1192, complete genome
GTTAAAAGCGATTTCGTTCTGTTTAAAATTCATTCTCAACTCACTCAATTTTCAACTCAACTTCCCGAAATTTCCTACATATCACCGCCGTGCAAGTCGGCCCCTCTTCTGAGGCGATAAAGGAATTTCTTCTCTTTTTCTCTCTCTTTCAAACAAGTTTAAGTGTTAAAATTTATTCTCAAGCAACCCACAATGTCGACTTCAAGCATGAACTCTTCAAGAATGGTAGATGGAATCGACCTCAATGATCCCACTGCCACTGCCCTAGCTGCTGCTAACGGCCTATGGGCTGATGTAGACAAGGCTTCAACTTGCATGTA...
11,427
OQ847406.1
Carrot necrotic dieback virus
Knierim,D., Margaria,P., Menzel,W., Winter,S.
Leibniz Institute Dsmz-German Collection of Microorganisms and Cell Cultures, Plant Virus Department
Germany
2023-06-21
DSMZ PV-0977
Sequivirus carotae
Sequivirus
Secoviridae
ssRNA(+)
10,047
GenBank
null
Germany
Germany
Daucus carota
null
null
null
null
Carrot necrotic dieback virus isolate DSMZ PV-0977, complete genome
GTTAAAAGCGATTTCGTTCTGTTGAAAATTCATTCTCAATACACTCAATTCTCACTCGACTTCCCGAAATTTCCTACATATCACCGCCGTGCAAGTCGGCCCCTCTTCTGAGGCGATAAAGGAATTTCTTCTTCTTTCTCTCTCTTTTAATCACTCTCAAGTAATAATTTTACTAAGAAACCTACTTACAATGTCTACTTCAAGCATGAATTCTTCAAGACTAGTTGATGGGATTGACCTCAATGATCCCACTGCTACTGCTTTAGCTGCTGCTAACGGATTGTGGGCTGATGTTGACAGAGCCTCCACGTGCATGTACA...
15,069
MW848523.1
Carrot necrotic dieback virus
Gaafar,Y.Z.A., Westenberg,M., Botermans,M., Laszlo,K., De Jonghe,K., Foucart,Y., Ferretti,L., Kutnjak,D., Pecman,A., Mehle,N., Kreuze,J., Muller,G., Vakirlis,N., Beris,D., Varveri,C., Ziebell,H.
Julius Kuehn Institute, Institute for Epidemiology and Pathogen Diagnostics
Germany
2021-10-10
NGSTPS18
Sequivirus carotae
Sequivirus
Secoviridae
ssRNA(+)
9,915
GenBank
1
Germany
Germany
Nicotiana benthamiana
null
2018
null
null
Carrot necrotic dieback virus isolate NGSTPS18, complete genome
GTTAAAAGCGATTTCGTTCTGTTGAAAATTCATTCTCAATACACTCAATTCTCACTCGACTTCCCGAAATTTCCTACATATCACCGCCGTGCAAGTCGGCCCCTCTTCTGAGGCGATAAAGGAATTTCTTCTTCTTTCTCTCTCTTTTAATCACTCTCAAGTAATAATTTTACTAAGAAACCTACTTACAATGTCTACTTCAAGCATGAATTCTTCAAGACTAGTTGATGGGATTGACCTCAATGATCCCACTGCTACTGCTTTAGCTGCTGCTAACGGGTTGTGGGCTGATGTTGACAGAGCCTCCACGTGCATGTACA...
37,338
EU980442.1
Carrot necrotic dieback virus
Menzel,W., Vetten,H.J.
Leibniz Universitaet Hannover, Institut fuer Pflanzenkrankheiten und Pflanzenschutz
Germany
2008-11-02
null
Sequivirus carotae
Sequivirus
Secoviridae
ssRNA(+)
9,905
GenBank
1
Germany
Germany
Daucus carota
null
2006
null
null
Carrot necrotic dieback virus strain Anthriscus, complete genome
GTTAAAAGCGATTTCGTTCTGTTTTGAATTCATTCTCAATTCTCTCAATTCTCAACTCAACTTCCCGAAATTTCCTACATATCACCGCCGTGCAAGTCGGCCCCTCTTTCGAGGCGATAAAGGAATTTCTTTCTTCTTCTTATCTATCTCTATTTTCAAGATTTGATAACTCAACACACTGCAACACAATGTCTGCTCCAAGCAAAAGCACTGTACGATTAGTAGATGGAATTAATATTAATGATCCCACTGCCACAGCATTGGCTGCTGCCAATGGACTGTGGGGCGATGTTGAAAACGCTTCCACGTGCATGTACAAT...
104,353
NC_006265.1
Carrot red leaf virus
Huang,L.F., Naylor,M., Pallett,D.W., Reeves,J., Cooper,J.I., Wang,H., Huang,L., Pallet,D.W.
National Center for Biotechnology Information, NIH
USA
2004-09-10
null
Carrot red leaf virus
Polerovirus
Solemoviridae
ssRNA(+)
5,723
RefSeq
1
null
null
null
null
null
null
PRJNA485481
Carrot red leaf virus, complete genome
ACAAAACAAACCGAGGGAGATAATCTTGATGCTCTTGATCACTCTTAAAGGAACAGTATCTTACTACGTCCCGACAGACTCATCAGCTCGATTATTTGCTTACAAATACTTTATACACCACGTGCTTGCTTTGTCATTTGCAACTTTACAATTGTACAATGTCGAGCCGTGTTTTTATGGCAATCTTCCTCGTGCTCTGCTATATATCCTGCCCTGCATTCTCAACAATGACTACAAAATGGGCGGGTCTGCCATCTGGTGCAAGCCAGATTATATTCGCGAACTTGTCCTATGGGGACTTGTTTGTGGATTCTACCCCC...
8,364
LC434061.1
Carrot red leaf virus
Yoshida,N., Tamada,T.
Agricultural Technology Section; Higashi 9 Minami 2, Naganuma, Hokkaido 069-1317
Japan
2018-11-23
SN
Carrot red leaf virus
Polerovirus
Solemoviridae
ssRNA(+)
5,723
GenBank
null
Japan:Hokkaido, Tokachi
Japan
Daucus carota
null
2014-08-21
null
null
Carrot red leaf virus SN genomic RNA, complete genome
ACAAAACAAACCGAGGGAGATAATCTTGATGCTCTTGATCACTCTTAAAGGAACAGTATCTTACTACGTCCCGACAGATTCATCAGCTCGATTATTTGCTTACAAATACTTCATACACCACGTGCTTGCTTTGTCATTTGCAACTTTACAATTGTACAATGTCGAGCCGTGTTTTTATGGCAATCTTCCTCGTGCTCTGCTATATATCCTGCCCTGCATTCTCAACAATGACTACAGAATGGGCGGGTCTGCCATCTGGTGCGAGCCAGATCACATTCGCGAACTTGTCCTATGGGGACTTGTTTGTGGATTCTACCCCC...
67,032
LC434062.1
Carrot red leaf virus
Yoshida,N., Tamada,T.
Agricultural Technology Section; Higashi 9 Minami 2, Naganuma, Hokkaido 069-1317
Japan
2018-11-23
HK
Carrot red leaf virus
Polerovirus
Solemoviridae
ssRNA(+)
5,726
GenBank
null
Japan:Hokkaido, Oshima
Japan
Daucus carota
null
2015-08-11
null
null
Carrot red leaf virus HK genomic RNA, complete genome
ACAAAACAAACCGAGGGAGATAATCTTGATGCTCTTGATCACTCTTAAAGGAACAGTATCTTACTACGTCCCGACAGATTCATCAGCTCGATTATTTGCTTACAAATACTTCATACACCACGTGCTTGCTTTGTCATTTACAACTTTACAATTGTACAATGTCGAGCCGTGTTTTTATGATAATCTTCCTCGTGCTCTGCTATATATCCTGCCCTGTATTCTCAACAATGACTACAGAATGGGCGGGTCTGCCATCTGGTGCGAACCAGATCACATTCGCGAACTTGTCCTATGGGGACTTGCTTGTGGATTCTACCCCC...
67,033
LC434063.1
Carrot red leaf virus
Yoshida,N., Tamada,T.
Agricultural Technology Section; Higashi 9 Minami 2, Naganuma, Hokkaido 069-1317
Japan
2018-11-23
SH
Carrot red leaf virus
Polerovirus
Solemoviridae
ssRNA(+)
5,723
GenBank
null
Japan:Hokkaido, Okhotsk
Japan
Daucus carota
null
2014-10-21
null
null
Carrot red leaf virus SH genomic RNA, complete genome
ACAAAACAAACCGAGGGAGATAATCTTGATGCTCTTGATCACTCTTAAAGGAACAGTATCTTACTACGTCCCGACAGATTCATCAGCTCGATTATTTGCTTACAAATACTTCATACACCACGTGCTTGCTTTGTCATTTGCAACTCTACAATTGTACAATGTCGAGCCGTGTTTTTATGGCAATCTTCCTCGTGCTCTGCTATATATCCTGCCCTGCATTCTCAACAATGACTACAGAATGGGCGGGTCTGCCATCTGGTGCGAACCAGATCACATTCGCGAACTTGTCCTATGGGGACTTGTTTGTGGATTCTACCCCC...
67,034
LC434064.1
Carrot red leaf virus
Yoshida,N., Tamada,T.
Agricultural Technology Section; Higashi 9 Minami 2, Naganuma, Hokkaido 069-1317
Japan
2018-11-23
KT2
Carrot red leaf virus
Polerovirus
Solemoviridae
ssRNA(+)
5,723
GenBank
null
Japan:Hokkaido, Ishikari
Japan
Daucus carota
null
2016-06-26
null
null
Carrot red leaf virus KT2 genomic RNA, complete genome
ACAAAACAAACCGAGGGAGATAATCTTGATGCTCTTGATCACTCTTAAAGGAACAGTATCTTACTACGTCCCGACAGATTCATCAGCTCGATTATTTGCTTACAAATACTTCATACACCACGTGCTTGCTTTGTCATTTGCAACTTTACAATTGTACAATGTCGAGCCGTGTTTTTATGGCAATCTTCCTCGTGCTCTGCTATATATCCTGCCCTGCATTCTCAACAATGACTACAGAATGGGCGGGTCTGCCATCTGGTGCAAGCCAGATCACATTCGCGAACTTGTCCTATGGGGACTTGTTTGTGGATTCTACCCCC...
67,035
AY695933.1
Carrot red leaf virus
Huang,L.F., Naylor,M., Pallett,D.W., Reeves,J., Cooper,J.I., Wang,H., Huang,L., Pallet,D.W.
Centre for Ecology and Hydrology, Plant Virology
null
2004-08-28
null
Carrot red leaf virus
Polerovirus
Solemoviridae
ssRNA(+)
5,723
GenBank
1
null
null
null
null
null
null
null
Carrot red leaf virus strain UK-1, complete genome
ACAAAACAAACCGAGGGAGATAATCTTGATGCTCTTGATCACTCTTAAAGGAACAGTATCTTACTACGTCCCGACAGACTCATCAGCTCGATTATTTGCTTACAAATACTTTATACACCACGTGCTTGCTTTGTCATTTGCAACTTTACAATTGTACAATGTCGAGCCGTGTTTTTATGGCAATCTTCCTCGTGCTCTGCTATATATCCTGCCCTGCATTCTCAACAATGACTACAAAATGGGCGGGTCTGCCATCTGGTGCAAGCCAGATTATATTCGCGAACTTGTCCTATGGGGACTTGTTTGTGGATTCTACCCCC...
109,558
NC_025254.1
Carrot thin leaf virus
Xu,D., Liu,H.-Y., Li,F., Tian,T., Li,R.
National Center for Biotechnology Information, NIH
USA
2014-10-15
CTLV-Cs
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,491
RefSeq
null
USA
USA
Coriandrum sativum
null
2007-02-15
null
PRJNA485481
Carrot thin leaf virus isolate CTLV-Cs, complete genome
AAAAATATAACAAATCAATACAACTCAACACAACACAACTCAAGCAATCAAAATCTTAAGCAATCAAGCATTTGGAACGATACAATCTTCCGAAGTCAGTCTAATTGTGATTTTATTCAGTTTGTTTTTAATTATACACGTTATTTACAATGGCAAGCATTCAGTTCGGAACACTACCAGCGGTCTCACTAGCAATCACCCAAGATGGTGCAAGGATTAACGCACCTAAGGAACTTAAACCCACACGGACCACTTACGTGAGTGTCGGGCGCACACTAATTGCCAAGAATGAGGCAATGGTGTCGAAGGCATTTGAGCAA...
6,404
OQ731904.1
Carrot thin leaf virus
Knierim,D., Margaria,P., Menzel,W., Winter,S.
Leibniz Institute Dsmz-German Collection of Microorganisms and Cell Cultures, Plant Virus Department
Germany
2023-06-21
DSMZ PV-1014
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,491
GenBank
null
Colombia: Bogota
Colombia
Ammi majus
null
null
null
null
Carrot thin leaf virus isolate DSMZ PV-1014, complete genome
AAAAATATAAAAACTCAACACAACTCAACACAACACAACTCAAGCAATCAAAATCTTAAGCAATCAAGCATTTGAAACGATACAATCTTTCGAAGTCAGTCTAATTGTGATTTTATTCAGTGTGCTTTTAATTATACACGTTATTTACAATGGCAAGCATTCAGTTCGGAACGCTACCAGCGGTCTCACTAGCAATCACCCAAGATGGTGCAAGGATGAACGCACCTAAGGGAATTAAACCCACACGAACCACTCACGTGAGTGTTGGGCGCACACTAATTGCCAAGAATGAGGCAATGGTGTCGAAGGCATTTGAGCAA...
15,062
OL472133.1
Carrot thin leaf virus
Rivarez,M.P.S., Pecman,A., Bacnik,K., Maksimovic Carvalho Ferreira,O., Vucurovic,A., Seljak,G., Mehle,N., Gutierrez-Aguirre,I., Ravnikar,M., Kutnjak,D., Kogej,Z., Lengar,Z.
National Institute of Biology, Department of Biotechnology and Systems Biology
Slovenia
2022-07-23
POR19SW
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,524
GenBank
null
Slovenia
Slovenia
null
null
2019-08
SAMN22357975
PRJNA772045
MAG: Carrot thin leaf virus isolate POR19SW, complete genome
ACTCAACTCAACTCAACACAACACAACTCAAGCAATCAAAATCTCAAGCAATCAAGCATTTTAAACGATACAATCTTTAAAAGTCAGTCTAATTGTGATTTTATTCAGTGTGTCTTTTATTTTACAAGTTATTTTCAATGGCAAGCATTCAATTCGGATCACTACCAGCAATTTCACTTAAAGCCTATTATGATGGTGCAAAGATCAACGCACCCATAGAGGTTAAACCTAAATGTATTAGTTATGCAAGTGTGGGAGAAGCATTAATTGCCAAATATGAGGCAACGAAGTACAAAGTATTCGAGAAATTGGATGCCACA...
27,777
OL472134.1
Carrot thin leaf virus
Rivarez,M.P.S., Pecman,A., Bacnik,K., Maksimovic Carvalho Ferreira,O., Vucurovic,A., Seljak,G., Mehle,N., Gutierrez-Aguirre,I., Ravnikar,M., Kutnjak,D., Kogej,Z., Lengar,Z.
National Institute of Biology, Department of Biotechnology and Systems Biology
Slovenia
2022-07-23
KOR19SW
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,529
GenBank
null
Slovenia
Slovenia
null
null
2019-08
SAMN22357975
PRJNA772045
MAG: Carrot thin leaf virus isolate KOR19SW, complete genome
ACTCAACTCAACACAACACAACTCAAGCAATCAAAATCTCAAGCAATCAAGCATTTGAAACGATACAATCTTTCAGAGTCAGTCTAATTGTGATTTTATTCATTGTGTCTTTTATTTTACAAGTTAATTTCAATGGCAAGCATTCAGTTCGGATCTTTACCAGCAGTGTCACTAAAAACCTACTACGATGGTGCAAAGATAAACGCACCCATGGAGGCTAAGCCCACATACACCACTTATGCAAATGTGGGGCAAACACTAGTTGCCAGAAATGAGGCAATGGTGTCTAGAGCATTCGAGAAATTGAATGACAAACTTAA...
27,778
OL472135.1
Carrot thin leaf virus
Rivarez,M.P.S., Pecman,A., Bacnik,K., Maksimovic Carvalho Ferreira,O., Vucurovic,A., Seljak,G., Mehle,N., Gutierrez-Aguirre,I., Ravnikar,M., Kutnjak,D., Kogej,Z., Lengar,Z.
National Institute of Biology, Department of Biotechnology and Systems Biology
Slovenia
2022-07-23
KOR20SW
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,479
GenBank
null
Slovenia
Slovenia
null
null
2020-08
SAMN22357975
PRJNA772045
MAG: Carrot thin leaf virus isolate KOR20SW, complete genome
ACTCAACTCAACTCAACACAACACAACTCAAGCAATCAAAATCTCAAGCAATCAAGCATTTGAAACGATACAATCTTTCAGAGTCAGTCTAATTGTGATTTTATTCATTGTGTCTTTTATTTTACAAGTTATTTTCAATGGCAAGCATTCAGTTCGGATCATTACCAGCAGTATCACTAAAAACCTATTACGATGGTGCAAAGATAAACGCACCCATGGAGGCTAAGCCCACATGCATCACTTATGCAAATGTGGGGCAAACACTAGTTGCCAGAAATGAGGCAATGGTGTCTAGAGCATTCGAGAAATTGAATGACAAA...
27,779
OK181777.1
Carrot thin leaf virus
Knierim,D., Margaria,P., Menzel,W., Winter,S.
Leibniz Institute DSMZ - German Collection of Microorganisms and Cell Cultures, Plant Virus Department
Germany
2021-11-22
DSMZ PV-1005
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,491
GenBank
null
Germany: Braunschweig
Germany
Daucus carota
null
null
null
null
Carrot thin leaf virus isolate DSMZ PV-1005, complete genome
AAAAATATAACAACTCAACTCAACTCAACACAACACAACTCAAGCAATCAAAATCTTAAGCAATCAAGCATTTGTGACGATACAATCTTACAAAGTCAGTCTAATTGTGATTTTATTCAGTGTGTCTTTTATTTTACAAGTTATTTTCGATGGCAAGCATTCAGTTCGGATCACTACCAGCAATTTCACTTAAAGTCTATTACGATGGTGCAAAGATCAACGCACCCATGGAGGCTAAATCTATACGCGTTGATCATGCAAGTGTGGGAGAGGCACTAACTGCCAAATACGAGGCAATGAAGTGCAAAGCATTCGAGAAA...
35,795
LT615233.1
Carrot thin leaf virus
Lotos,L.
AUTH, Faculty of Agriculture, Aristotle University of Thessaloniki, Plant Pathology Laboratory, P.O. Box 269, Thessaloniki, 54 124
Greece
2020-03-11
RL5-Pot
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,492
GenBank
null
Greece
Greece
Torilis arvensis subsp. arvensis
null
2008
SAMEA4040781
PRJEB14424
Carrot thin leaf virus isolate RL5-Pot genome assembly, complete genome: monopartite
ATAAAAATATAACAAATCAACTCAACTCAACACAACACAACTCAAGCAATCAAAATCTTAAGCAATCAAGCATTTGAAACGATACAATCTTTCAGAATCAGTCTAATTGTGATTTTATTCAGTGTGTCTTTATTTTACAAGGTATTTACAATGGCAAGCATTCAGTTTGGATCACTACCAGCAGTATCACTTAACGCCTATTATGGCGGTGCAAAAGTCAGCGCACCCATAGAGGCTAAACCCACAAGTATCACTTATGCTAGTGTGGGGTCAGCACTAGTTGCCAGAAATGAGGCAATAGTGTCTAAAGCATTTGAGAA...
53,569
MH170889.1
Carrot thin leaf virus
Mehle,N., Kutnjak,D., Tusek Znidaric,M., Ravnikar,M.
National Institute of Biology, Department of Biotechnology and Systems Biology
Slovenia
2019-01-18
NIB_D566-16
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,490
GenBank
null
Slovenia
Slovenia
Petroselinum crispum
null
2016-09-06
null
null
Carrot thin leaf virus isolate NIB_D566-16, complete genome
AAAATATAACAACTCAACTCAACTCAACACAACACAACTCAAGCAATCAAAATCTTAAGCAATCAAGCATTTGAAGCGATACAATCTTTCAAAGTCAGTCTAATTGTGATTTTATTCAGTGTGTCTTTTATTTTACAAGTTATTTTCAATGGCAAGCATTCAATTTGGATCACTACCAGCAGTTTCACTAAAAGCCTATTACGATGGTGCAAAGATCAACGCACCCATAGAGGCTAAACCCGTATGCGTTAATTACGCAAGTGTGGGAGAAGCAATGATTGCCAAATACGAGGCAACGAAGTATAAAGCATTCGAGAAAT...
65,712
JX156434.1
Carrot thin leaf virus
Xu,D., Liu,H.-Y., Li,F., Tian,T., Li,R.
USDA-ARS, National Germplasm Resources Laboratory
USA
2013-07-12
CTLV-Cs
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,491
GenBank
null
USA
USA
Coriandrum sativum
null
2007-02-15
null
null
Carrot thin leaf virus isolate CTLV-Cs, complete genome
AAAAATATAACAAATCAATACAACTCAACACAACACAACTCAAGCAATCAAAATCTTAAGCAATCAAGCATTTGGAACGATACAATCTTCCGAAGTCAGTCTAATTGTGATTTTATTCAGTTTGTTTTTAATTATACACGTTATTTACAATGGCAAGCATTCAGTTCGGAACACTACCAGCGGTCTCACTAGCAATCACCCAAGATGGTGCAAGGATTAACGCACCTAAGGAACTTAAACCCACACGGACCACTTACGTGAGTGTCGGGCGCACACTAATTGCCAAGAATGAGGCAATGGTGTCGAAGGCATTTGAGCAA...
93,749
JX156435.1
Carrot thin leaf virus
Xu,D., Liu,H.-Y., Li,F., Tian,T., Li,R.
USDA-ARS, National Germplasm Resources Laboratory
USA
2013-07-12
CTLV-Dc
Carrot thin leaf virus
Potyvirus
Potyviridae
ssRNA(+)
9,490
GenBank
null
USA
USA
Daucus carota
null
1989-03-15
null
null
Carrot thin leaf virus isolate CTLV-Dc, complete genome
AAAATATAAAAACCCAACACAACTCAACACAACACAACTCAAGCAATCAAAATCTTAAGCAATCAAGCATTTGAAACGATACAATCTTTCGAAGTCAGTCTAATTGTGATTTTATTCAGTTTGTTTTTAATTATACACGTTATTTACAATGGCAAGCATTCAGTTCGGAACACTACCAGCGGTCCCACTAGCAATCACCCAAGATGGTGCAAGGACTAACGCACCTAAGGAAATTAAACCCACACGGACCACTTACGTGAGTGTTGGGCGCACACTAATTGCTAAGAATGAGGCAATGGTGTCGAAGGCATTTGAGCAAT...
93,750
NC_012698.2
Cassava brown streak virus
Mbanzibwa,D.R., Tian,Y.P., Tugume,A.K., Mukasa,S.B., Tairo,F., Kyamanywa,S., Kullaya,A., Valkonen,J.P., Tian,Y., Valkonen,J.P.T.
National Center for Biotechnology Information, NIH
USA
2009-05-18
KOR6
Cassava brown streak virus
Ipomovirus
Potyviridae
ssRNA(+)
8,995
RefSeq
1
Tanzania
Tanzania
Manihot esculenta
null
2008
null
PRJNA485481
Cassava brown streak virus, complete genome
AAAAATAAACATGATATAGGAAAACATTAAAATACATCAATTGCAATCGCATTAAATTTTGAAGCATTCAAAAAATAACAATTTCACAACAAGCAGCCACTTGTATTTTTGTGTTGTTGACTACGATGGCAACTATCCAAGTTTTCAAAACTATCCAGTTTGGTTCGTTTGAACCAGTCACTATCAAGTGTGACAATGAACCAATCCCACAAAATCCAAAATTCAACGAAGAACTGACGGTTGTAAGCGAAGTCGAGGAGAAAAAAGTTTGTGAAAAATCTCAGTCTTCAACGGTTAAACCGATTGATTTGTTCTCAATT...
7,686
OQ335847.1
Cassava brown streak virus
Knierim,D., Margaria,P., Menzel,W., Winter,S.
Leibniz Institute Dsmz - German Collection of Microorganisms and Cell Cultures, Plant Virus Department
Germany
2023-06-21
DSMZ PV-0948
Cassava brown streak virus
Ipomovirus
Potyviridae
ssRNA(+)
9,008
GenBank
null
Mozambique
Mozambique
Manihot esculenta
null
null
null
null
Cassava brown streak virus isolate DSMZ PV-0948, complete genome
AAAAATAAACATGACATAAAAAAACATAAGAATACATTGATTGCAATTACAAAACATCTTGCGATAAAGCATAACTTGTTGTGAACAAGGAAACAATCAATCAACTCTTTCAATATATCTGCACCAATGACAACGATTCAGCTATTCAAGACTGTTCAGTTTGGTTCATTTGAACCGGTTACAATTGAGTGCACTACTGGTGAGATTCTGAAGATACCCGCATATATTGCAAATGCTGAGGGTAGTAGAAATGCTCTTGGAAATGCTCCAGAGTTGGTCTCAGGAAACAATAATCAACAGGTCAAATTCAAGCCAATTGA...
15,049
MZ362877.1
Cassava brown streak virus
Wosula,E., Amour,M., Shirima,R.R., Mohammed,N.A., Hamza,A.A., Mouigni,H., Nouhou,S., Mchinda,N.M., Ceasar,G., Legg,J.P., Njukwe,E.
IITA-Tanzania, Virus Vector Ecology
Tanzania
2022-09-27
Comoros:Ngazidja1.1
Cassava brown streak virus
Ipomovirus
Potyviridae
ssRNA(+)
9,002
GenBank
null
Comoros
Comoros
Manihot esculenta
null
2019-07-02
null
null
Cassava brown streak virus strain AQHM1C, complete genome
AAAAATAAACATGACATAAGAAAACATAAGAATACATTGATTGCAATTACAAAACATCTTGCGAAAAAGCATAACTTGTTGTGAACAAGGAAACAATCAATCAGTTCTTTCAATACATCTGTATCAATGACAACAATTCAGCTATTCAAGACCGTTCAGTTTGGTTCATTTGAACCGGTTACAATTGAGTGCACCACTGATAAGATTCTGAAGATACCCACAAACATTACTGAGGATAGTAAAAATGTTCTAGAAAATGTTCCAGAGTTAGTCACAGAAAAGAACAATCAAAAGGTCAAATTCAAGCCAATTGATTTGTA...
24,014
MK955888.1
Cassava brown streak virus
Winter,S.
Leibniz Institute - DSMZ, Plant Virus Department
null
2019-12-21
Ug65
Cassava brown streak virus
Ipomovirus
Potyviridae
ssRNA(+)
9,026
GenBank
null
Uganda
Uganda
Manihot esculenta
plant leaf
2012-06
null
null
Cassava brown streak virus isolate Ug65, complete genome
AAAAATAAATATGACATAAGAAAACATAAGAATACATTGATTGCAATTACAAAACATCTTGCAAGAAAGCATAACTTGTTGTGAACAAGGAAACAATCAATCAATTCTCTCAATATATCTGCATCAATGACAACGATTCAGCTATTCAAGACTGTTCAGTTTGGTTCATTTGAACCGATTACAATTGAGTGCACTACTGATGAGGTTCCGAAGATACCCGCATACATTGCAAATGCTGAGGGTAGTAGAAATGCTCTGGAAAATGCTCCAGAGTTAGTTTCAGGAAACGATAATCAAAAGGTCAAATTCAAGCCGATTGA...
57,390
MF975780.1
Cassava brown streak virus
Duff-Farrier,C.R., Foster,G.D., Bailey,A.M., Seal,S., Alicai,T., Mbanzibwa,D.R., Nanyiti,S., Bunawan,H., Tomlinson,K.R.
University of Bristol, School of Biological Sciences
United Kingdom
2019-06-01
null
Cassava brown streak virus
Ipomovirus
Potyviridae
ssRNA(+)
9,036
GenBank
null
Tanzania: Mikocheni
Tanzania
Manihot esculenta
null
2013
null
null
Cassava brown streak virus strain Tanza, complete genome
AAATTTAAACTATGACATAAGAAAACATAAGAATACATTAATTGCAATTACAAAACATCTTGCGAGAAAGCAAAACTTGTTGTGAACAAGGAAACAATCAATTGACTCTTTCAATATATCTGCATCAATGACAACGATTCAGCTATTCAAGACTGTTCAGTTTGGTTCATTTGAACCGGTGACAATTGAGTGCACTACTGATGAAATTCCGAAAATACCCGCATACATTGTAAATGATGAGGGTAGTAGAAATGCTCTGGAAAATGCTCCAGAGTTAGTTTCAGGAAGCGACAATCAAAAAGTCAAGTTCAAGCCAATTG...
62,359