SciHorizon-GENE: Benchmarking LLM for Life Sciences Inference from Gene Knowledge to Functional Understanding
Paper • 2601.12805 • Published
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The dataset generation failed
Error code: DatasetGenerationError
Exception: TypeError
Message: Couldn't cast array of type struct<tissue_list: list<item: string>, category: string> to string
Traceback: Traceback (most recent call last):
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1837, in _prepare_split_single
writer.write_table(table)
~~~~~~~~~~~~~~~~~~^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 765, in write_table
self._write_table(pa_table, writer_batch_size=writer_batch_size)
~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 773, in _write_table
pa_table = table_cast(pa_table, self._schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2369, in table_cast
return cast_table_to_schema(table, schema)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2303, in cast_table_to_schema
cast_array_to_feature(
~~~~~~~~~~~~~~~~~~~~~^
table[name] if name in table_column_names else pa.array([None] * len(table), type=schema.field(name).type),
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
feature,
^^^^^^^^
)
^
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 1852, in wrapper
return pa.chunked_array([func(chunk, *args, **kwargs) for chunk in array.chunks])
~~~~^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2143, in cast_array_to_feature
return array_cast(
array,
...<2 lines>...
allow_decimal_to_str=allow_decimal_to_str,
)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 1854, in wrapper
return func(array, *args, **kwargs)
File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2007, in array_cast
raise TypeError(f"Couldn't cast array of type {_short_str(array.type)} to {_short_str(pa_type)}")
TypeError: Couldn't cast array of type struct<tissue_list: list<item: string>, category: string> to string
The above exception was the direct cause of the following exception:
Traceback (most recent call last):
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
~~~~~~~~~~~~~~~~~~~~~~~~~^
builder, max_dataset_size_bytes=max_dataset_size_bytes
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
)
^
File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1683, in _prepare_split
for job_id, done, content in self._prepare_split_single(
~~~~~~~~~~~~~~~~~~~~~~~~~~^
gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
):
^
File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1869, in _prepare_split_single
raise DatasetGenerationError("An error occurred while generating the dataset") from e
datasets.exceptions.DatasetGenerationError: An error occurred while generating the datasetNeed help to make the dataset viewer work? Make sure to review how to configure the dataset viewer, and open a discussion for direct support.
question_index string | question_type string | knowledge string | question string | options dict | answer string |
|---|---|---|---|---|---|
7e43ab932a2b76c6b421b7f428e066539c2d808236944066cffaa8b1176952c7 | single_choice | chromosome | Select the chromosome location of LOC7795 gene. | {
"A": "6;6q22.3-q23.1",
"B": "1;1p36.1-p35",
"C": "5;5q12.1",
"D": "15;15q13.3-q14"
} | B |
d860e35df4b9dced8788e2076f7d4bacaff1572f668b55ba199b4a48f6a5c66d | single_choice | chromosome | Select the chromosome location of LOC89844 gene. | {
"A": "19;19p13.12",
"B": "X;Xq12-q13.1",
"C": "X;Xq26.3-q27.1",
"D": "6;6p25.2"
} | A |
74a579beadd5958205c7a7cdf8d61137d615182d1b55635013b96cf41159cb63 | single_choice | chromosome | Select the chromosome location of LOC90246 gene. | {
"A": "3;3q21.3",
"B": "4;4q35.2",
"C": "X;Xq12-q13",
"D": "17;17q12|17q12"
} | A |
815afab57ae20e4eff650f36543e1c9ec09a2def21927f2e4669c9b3f9a33d6e | single_choice | chromosome | Select the chromosome location of LOC91450 gene. | {
"A": "13;13q14.12-q14.13",
"B": "14;14q22.3-q23.1",
"C": "9;9q12",
"D": "15;15q24.3"
} | D |
4895001ae8b21a01ad0b18e64dbb23c46d06faa08eacc32bf646bed7af417409 | single_choice | chromosome | Select the chromosome location of LOC93429 gene. | {
"A": "3;3q22.1-q24",
"B": "20;20q13.2-q13.31",
"C": "19;19q13.32",
"D": "3;3q13.1"
} | C |
1a12336d44419f28f96786de109deacff560f2151f4e9f2270c8d2b7eb1d2974 | single_choice | chromosome | Select the chromosome location of LOC93463 gene. | {
"A": "8;8q13",
"B": "19;19q13.33",
"C": "2;2q37.3",
"D": "20;20q13.2-q13.31"
} | C |
98c7118f9f016d05197f5f1382f1d2da2b8d5f88c1376452924844aed789a896 | single_choice | chromosome | Select the chromosome location of LOC114224 gene. | {
"A": "X;Xq25-q26",
"B": "9;9p13.3",
"C": "2;2q33.1",
"D": "5;5q31.3-q32"
} | B |
24b3679fdad51f95e002e66b72def79e9152f72cdbec9e181e5820f5dca15b48 | single_choice | chromosome | Select the chromosome location of LOC121296 gene. | {
"A": "4;4p12",
"B": "10;10q23.2",
"C": "2;2p16-p15",
"D": "12;12q24.32"
} | D |
c9777cb8a2b60aeda6f7dad558140db33de91fbe1b4045f922b270655065b072 | single_choice | chromosome | Select the chromosome location of LOC123862 gene. | {
"A": "16;16q24.1",
"B": "4;4q24",
"C": "16;16q24.3",
"D": "7;7q32.3"
} | A |
c76f7fe03d4ddde5605edf65489ad0efe9692f0075f28c52b3c80316d332d32e | single_choice | chromosome | Select the chromosome location of LOC124865 gene. | {
"A": "1;1p13.2",
"B": "6;6p24.2",
"C": "17;17q21.33",
"D": "4;4q32.3-q33"
} | C |
a7bb061647931bead3554084b1564efca02bc1726ddcf118220d9616624594d4 | single_choice | chromosome | Select the chromosome location of LOC126860 gene. | {
"A": "7;7p22.3",
"B": "5;5q11.2-q12.1",
"C": "1;1q25.2",
"D": "X;Xq24-qter"
} | C |
82ff69f328aea1ebd873e2d13267237fd7afd96a43ddd6ca880c65609ca53407 | single_choice | chromosome | Select the chromosome location of LOC126987 gene. | {
"A": "1;1p21.1",
"B": "3;3p26",
"C": "18;18q23",
"D": "8;8p23-p21"
} | A |
ee862fddea192888174a62ff37a948119cf5f7dbadcefb2aebc150912aa76870 | single_choice | chromosome | Select the chromosome location of LOC127011 gene. | {
"A": "1;1q31.3",
"B": "X;Xp22",
"C": "7;7q11.23",
"D": "1;1q42.3-q43"
} | A |
875a1d330b62bfc9b55aab8df78b873aac5709bf69ae3529836718c355d49ec9 | single_choice | chromosome | Select the chromosome location of LOC128136 gene. | {
"A": "2;2p16",
"B": "3;3q22-q24",
"C": "1;1q43",
"D": "11;11p"
} | C |
8cd4dad2d84129608ea498bad4a8bf1609ba461b0d5ee39420418efa6db0119c | single_choice | chromosome | Select the chromosome location of LOC129026 gene. | {
"A": "7;7p13-q32",
"B": "22;22q11.22",
"C": "9;9q31.3",
"D": "1;1q42.12"
} | B |
863e2b86efdc092bf26fabd6b8213c66d388f7fdbe13ee5d5d61982e4e2559ac | single_choice | chromosome | Select the chromosome location of LOC132386 gene. | {
"A": "17;17q21.1",
"B": "4;4q34.3",
"C": "2;2q14.1-q14.2",
"D": "12;12q21.32"
} | B |
2cc0ab04a7f1532a2ac5d082cf3e184554a518f62349d326a9b515231b960bc0 | single_choice | chromosome | Select the chromosome location of LOC133332 gene. | {
"A": "1;1p36.11-p35.3",
"B": "12;12q21.32-q21.33",
"C": "4;4q32.2",
"D": "19;19q13.31-q13.32"
} | C |
1f28d829944fdfae6f2897cc95375448b3c18698572b0413a512daa0d29a8adc | single_choice | chromosome | Select the chromosome location of LOC143666 gene. | {
"A": "6;6q13",
"B": "11;11p15.5",
"C": "16;16q12.1-q12.2",
"D": "8;8q11.2-q13.2"
} | B |
e90fd6d6a8336568378c0d3681b686e40d744ab271526a64fc22242558b1f8ba | single_choice | chromosome | Select the chromosome location of LOC145474 gene. | {
"A": "14;14q24.2",
"B": "13;13q21.2",
"C": "11;11q25-qter",
"D": "16;16p12.3-p12.2"
} | A |
9532028bdc8aa0a483d99409228246f9e6e85270ab24ce53b7b442a61f434073 | single_choice | chromosome | Select the chromosome location of LOC145845 gene. | {
"A": "14;14q31.3",
"B": "17;17q23.2",
"C": "X;Xp21.3",
"D": "15;15q14"
} | D |
51483cfcc313ef15de0e2e6c2107a029b98836b16cdd9fa855cea730648c3f57 | single_choice | chromosome | Select the chromosome location of LOC146253 gene. | {
"A": "6;6p25.2",
"B": "9;9p22-p21",
"C": "16;16q12.2",
"D": "4;4p16.2-p16.1"
} | C |
eca9dc0669f21b2472176318ac5b0a9be79b0e4a58130c71ffd295177f93f8ae | single_choice | chromosome | Select the chromosome location of LOC148430 gene. | {
"A": "3;3p11.2-p11.1",
"B": "1;1q23.3",
"C": "1;1p21.2",
"D": "9;9q31-q32"
} | B |
7291a8d8b288210b7b552c1837cf88983eec79984fb4f4295056549e666d9e9c | single_choice | chromosome | Select the chromosome location of LOC148696 gene. | {
"A": "2;2p25.3",
"B": "11;11p15.4|11p15",
"C": "1;1q32.2",
"D": "1;1q24.1"
} | C |
07a66dc7b06f562bf5819fa1d525850ebb37a1604c166ede5ae3bda4d2a1f374 | single_choice | chromosome | Select the chromosome location of LOC149684 gene. | {
"A": "15;15q15.2",
"B": "16;16p11",
"C": "18;18q22.1",
"D": "20;20q11.23"
} | D |
4560a202189f2bfc1b63ffb3be86fd523e080d6885daabfcc099c38dee16224f | single_choice | chromosome | Select the chromosome location of LOC150935 gene. | {
"A": "6;6p24",
"B": "6;6p25.3",
"C": "13;13q33.2|13q34",
"D": "2;2q37.3"
} | D |
dd8649e6aa39449087cc0e8b841ff99dab581d5525644129566d82b016a50a76 | single_choice | chromosome | Select the chromosome location of LOC151760 gene. | {
"A": "9;9q34.11",
"B": "3;3q13.13",
"C": "9;9q22.32",
"D": "6;6p12"
} | B |
45b7df2fd88310d5736dc0ef57d3ad7659703cdacd54c1c2b3e7076c5c0882c5 | single_choice | chromosome | Select the chromosome location of LOC152594 gene. | {
"A": "6;6p12.1-p11.2",
"B": "11;11q13.5-q14.1",
"C": "4;4q31.1",
"D": "3;3q13.33|3q21.1"
} | C |
29b2497c06f87c69a33b40fe4748231289940cb50155c8014fd7d4b826e93ff0 | single_choice | chromosome | Select the chromosome location of LOC152845 gene. | {
"A": "12;12q13.12",
"B": "6;6q22.3-q23.1",
"C": "4;4q21.23",
"D": "8;8q24.1"
} | C |
7e7fbb8ea43a83172d3197bb36995f30c4e5e3a21d7f2a9794390a13ea335cd6 | single_choice | chromosome | Select the chromosome location of LOC153893 gene. | {
"A": "2;2q12.3",
"B": "X;Xq25-q27.1",
"C": "6;6q16.3",
"D": "8;8q24.11-q24.12"
} | C |
59a363a7cec980d7d5b72bdbae72f19e23429527e6e41e9c4900c544c00490da | single_choice | chromosome | Select the chromosome location of LOC153910 gene. | {
"A": "12;12q22-q23.2",
"B": "22;22q12-q13",
"C": "6;6q24.2",
"D": "5;5q12.2"
} | C |
d5e3775c9ee8840461042be32da23b5bf2512614c1a3d44501321aa1b75de51d | single_choice | chromosome | Select the chromosome location of LOC154449 gene. | {
"A": "6;6q27",
"B": "11;11p15-p14",
"C": "5;5q21.1",
"D": "1;1q31"
} | A |
fe5d966b6ffb21b85c4225c5c71de5dcc38ea4b8036e2f8be9de84796be3d89a | single_choice | chromosome | Select the chromosome location of LOC154761 gene. | {
"A": "3;3p12.1",
"B": "7;7q21.3",
"C": "7;7q35",
"D": "X;Xq13.1"
} | C |
5808c6d09cab90872f2abf29989d2c6846a094bfc7339ef58527ec4a831575dd | single_choice | chromosome | Select the chromosome location of LOC154937 gene. | {
"A": "19;19q13|19q13-qter",
"B": "7;7p11.2",
"C": "5;5p14.3",
"D": "Y;Yq"
} | B |
6df19ba654460793bdc4e589c6e597a8a84fa73bf00004bb1053ee1c9939bc0d | single_choice | chromosome | Select the chromosome location of LOC155060 gene. | {
"A": "16;16p12.3-p12.2",
"B": "18;18p11.3-p11.2",
"C": "7;7q36.1",
"D": "7;7q11.22-q11.23"
} | C |
4538fbe6829623addc17f3fea6494f6bd2ef5af3c9d0b57ba355e0693c50dd19 | single_choice | chromosome | Select the chromosome location of LOC157273 gene. | {
"A": "17;17q25.1",
"B": "8;8p23.1",
"C": "5;5q22.1-q22.2",
"D": "4;4q13.1-q13.2"
} | B |
2f31a233cc8a839a249a3b8120003522dcd8a9572eb22f5c43ce35714ad70f8a | single_choice | chromosome | Select the chromosome location of LOC158434 gene. | {
"A": "10;10q23.31",
"B": "9;9p13.3",
"C": "9;9q22.32",
"D": "5;5q11.2-q13.3"
} | C |
35eb917b9cd4d5c0486f854ccab1cc23c077215c715daaa7cd9e429b54d08724 | single_choice | chromosome | Select the chromosome location of LOC158435 gene. | {
"A": "6;6p23",
"B": "9;9q22.32",
"C": "10;10p11.1",
"D": "11;11p15.3-p15.2"
} | B |
3c3879db80d27a5d529df8a4d086fad1c05cd37406c5b55fabe8ebb79bf7ebe2 | single_choice | chromosome | Select the chromosome location of LOC162137 gene. | {
"A": "3;3p23-p21",
"B": "16;16p11.2",
"C": "20;20q13.2",
"D": "16;16p13.2"
} | B |
bf2e7cc15da360d1f544fb6a7058cf4fac793687d14a98ef97d000db2bfaf778 | single_choice | chromosome | Select the chromosome location of LOC171417 gene. | {
"A": "10;10q24",
"B": "2;2q31.1",
"C": "16;16q21",
"D": "4;4q21-q25"
} | B |
10983d40caf42ea0293837494c085ee9fcb114e25d1be996d72531647954c33d | single_choice | chromosome | Select the chromosome location of LOC196469 gene. | {
"A": "12;12q23.3",
"B": "6;6q26",
"C": "19;19p13.11",
"D": "16;16p12.2|16p12.2"
} | A |
30b487b9107e7ef22879c4a99839f6c23b386d2933c4d4eb97a4ac8c78717b2b | single_choice | chromosome | Select the chromosome location of LOC202319 gene. | {
"A": "5;5q11.1",
"B": "17;17q23.3-q24.1",
"C": "2;2q22.3",
"D": "Y;Yq11.21"
} | A |
0488d23af273898028946ecd7a323366eaa86dcce93c81ca8fdb2175f42e3542 | single_choice | chromosome | Select the chromosome location of LOC203930 gene. | {
"A": "13;13q33.2",
"B": "7;7q35",
"C": "11;11q22.3",
"D": "14;14q21"
} | C |
4b87758c4abe567b0ce21526ab65c9b3a4842d5896750bd4c38dccf7cf7b0513 | single_choice | chromosome | Select the chromosome location of LOC220077 gene. | {
"A": "11;11p11.2",
"B": "7;7q31.31",
"C": "2;2q12.2",
"D": "11;11q13.4"
} | D |
1508cc7bb4ba36f4baebaaa489af8da124773da31849d1df70823455ba9a48b8 | single_choice | chromosome | Select the chromosome location of LOC221946 gene. | {
"A": "2;2p22.1|2p22-p21",
"B": "6;6p22.2",
"C": "7;7p22.1",
"D": "X;Xp11.3"
} | C |
33116f5b5fbedc9ddfcbdf6ff0c81a21c2d664f92b6d8e3a5af3f84103c4d0aa | single_choice | chromosome | Select the chromosome location of LOC254896 gene. | {
"A": "16;16p13.12",
"B": "19;19p13",
"C": "11;11p15.4",
"D": "8;8p21.3"
} | D |
eb5568ed85ef36d33e34b95f06866b1c94feac78071264efa4371d2a7a0b4872 | single_choice | chromosome | Select the chromosome location of LOC260331 gene. | {
"A": "6;6p24.3-p24.2",
"B": "8;8q11.22",
"C": "2;2q37.1",
"D": "4;4q35-qter"
} | C |
af80fdb1eb115295ecfd86f65ec6fe0929caa2cd33fbc26895f5ea56dece3749 | single_choice | chromosome | Select the chromosome location of LOC260339 gene. | {
"A": "1;1p22.2",
"B": "11;11q23",
"C": "6;6q22.31",
"D": "8;8q23.2"
} | C |
d3f8a93db8276c1c07b88c01ca9f9d1750db2f749039848b8e3baa93dde6fde5 | single_choice | chromosome | Select the chromosome location of LOC268276 gene. | {
"A": "11;11p15.3",
"B": "2;2p22.1|2p22-p21",
"C": "11;11q13.4",
"D": "4;4p12-p11"
} | C |
65a890aa079cb901afe459240a45408a5d7f24b6741de0db507aac66ce52936d | single_choice | chromosome | Select the chromosome location of LOC282551 gene. | {
"A": "3;3q13.32-q13.33",
"B": "22;22q12.1-q12.2",
"C": "2;2p23.1-p22.3",
"D": "14;14q21.2"
} | B |
ae9bbf69f0f2dfecc3a0ae8cf8aa033bf74cf468eb6102aedfc182fc39c1395c | single_choice | chromosome | Select the chromosome location of LOC283028 gene. | {
"A": "14;14p12",
"B": "2;2q36.2",
"C": "10;10q11.21",
"D": "12;12q13.13-q13.2"
} | C |
8474a5d6c88075e1800487ad61ecc655ac9c9fbaf79f0a714e602040a543ef6e | single_choice | chromosome | Select the chromosome location of LOC283038 gene. | {
"A": "1;1p21.3-p21.2",
"B": "6;6q11-q14",
"C": "X;Xq21.31",
"D": "10;10q26.13-q26.2"
} | D |
fbbecf3788f73103cdd052ce29cb11d79b4c068954c30815fc50f8653cdc2103 | single_choice | chromosome | Select the chromosome location of LOC283045 gene. | {
"A": "5;5q11.2-q13.3",
"B": "16;16q23.3-q24.1",
"C": "7;7q36.3",
"D": "10;10q21.2"
} | D |
206a5cd252e76cfd62058c6ca0af63347361a5c08e2a6495ce41280341e39a1d | single_choice | chromosome | Select the chromosome location of LOC283172 gene. | {
"A": "2;2q32.2",
"B": "1;1q23.1",
"C": "1;1q23",
"D": "11;11q25"
} | D |
ef2bba8ff7207da2ffab3a3cb0853bba7b5236f5cf51d6b42351eec78dbedd1d | single_choice | chromosome | Select the chromosome location of LOC283299 gene. | {
"A": "20;20p13-p12.3",
"B": "4;4q31.23-q31.3",
"C": "8;8q23.1",
"D": "11;11p15.4"
} | D |
35ecddf1ba4e48c3f312e605803000be371b4dae41567b1669bdf7b57edf53ae | single_choice | chromosome | Select the chromosome location of LOC283387 gene. | {
"A": "5;5q11.1",
"B": "12;12q14.1",
"C": "8;8q22.1",
"D": "19;19q13.13-q13.2"
} | B |
f6a1505623a4dc73179a05f3ecb2d4d95a1897111d1f674c5abb0a3996493ed8 | single_choice | chromosome | Select the chromosome location of LOC283683 gene. | {
"A": "15;15q11.2",
"B": "5;5q13.1-q13.2",
"C": "13;13q32.1",
"D": "10;10p11.22-p11.21"
} | A |
157f6e893ad2ba542bf7b3e5df69e4e98d80c679efb8ba092d18d545d9f3271e | single_choice | chromosome | Select the chromosome location of LOC283731 gene. | {
"A": "15;15q24.1",
"B": "17;17q23.1-q23.2",
"C": "8;8q12.1",
"D": "2;2q36.1-q36.3"
} | A |
dc080c5d2f3f2082305de0b6f09cc8a0eeb84517796f2a20a0d978565dc1215d | single_choice | chromosome | Select the chromosome location of LOC283804 gene. | {
"A": "20;20q13.13",
"B": "15;15q11.2",
"C": "6;6p11",
"D": "10;10p15.1"
} | B |
31daa7ee83cd15f9c7707f11d6c5d95feb2076e43db9ce5835201dfaf654f38c | single_choice | chromosome | Select the chromosome location of LOC284009 gene. | {
"A": "17;17p13.3",
"B": "5;5q23.1",
"C": "4;4q21.1|4p15.1-p14",
"D": "5;5q14.3-q15"
} | A |
fa0c38a8f19a427b3c05b25ebfc8666362b6486e3618b9fd94c4a5af9eb5b489 | single_choice | chromosome | Select the chromosome location of LOC284191 gene. | {
"A": "17;17p11.2",
"B": "19;19q13.11",
"C": "18;18q12.2-q12.3",
"D": "3;3p25.2"
} | A |
3c31912ba5cc2a32bf1256677e997755f25f889ea557d37e867a6fcb1a46d8e8 | single_choice | chromosome | Select the chromosome location of LOC284240 gene. | {
"A": "12;12p13.31-p13.2",
"B": "22;22q12.1-q12.2",
"C": "18;18q23",
"D": "13;13q14.12-q14.13"
} | C |
d4dd047dc664f9be2c6a00f999176269018d2014134e5eb2d1cc2b2bfd207597 | single_choice | chromosome | Select the chromosome location of LOC284269 gene. | {
"A": "8;8q12-q13",
"B": "18;18p11.21",
"C": "20;20q13.2",
"D": "14;14q32.31-q32.32"
} | B |
20affb50ea1279fba1c2ee858685c79ad498d29d670a2a6a00e83c0b2755d7e7 | single_choice | chromosome | Select the chromosome location of LOC284344 gene. | {
"A": "17;17q21.3",
"B": "14;14q24.1",
"C": "19;19q13.31",
"D": "10;10p11.1"
} | C |
4248da305333438742d45ba6be544212314469863f8d44747cd62f7a7255b0a4 | single_choice | chromosome | Select the chromosome location of LOC284379 gene. | {
"A": "7;7p14.2-p14.1",
"B": "19;19q13.42",
"C": "9;9p22.3-p22.2",
"D": "22;22q13.2-q13.31"
} | B |
fe54d7f1815adf64cc2fa69315de47e52bd7e3b2f668e41027399fb28a7a2740 | single_choice | chromosome | Select the chromosome location of LOC284412 gene. | {
"A": "X;Xq21.33-q23",
"B": "19;19q13.12",
"C": "X;Xp21.2-q21.1",
"D": "12;12p12.1"
} | B |
2331c834723eb791da3bc213076ca8b3187382c0af490bd6b380b7cc491ac6ef | single_choice | chromosome | Select the chromosome location of LOC284600 gene. | {
"A": "11;11q22-qter",
"B": "2;2p23-p16",
"C": "3;3p21.3",
"D": "1;1p36.33"
} | D |
9048aca7aa7953b15dad54fde59393fbd92e8375405866628993e345d897c411 | single_choice | chromosome | Select the chromosome location of LOC284620 gene. | {
"A": "1;1q22",
"B": "4;4q28-q31",
"C": "10;10q23.2",
"D": "X;Xq23-q27"
} | A |
954b12690e3f40d5e30e86f6abd4ce33b0fb62e5bed9cfc35b4193371ec8150e | single_choice | chromosome | Select the chromosome location of LOC284788 gene. | {
"A": "9;9p24.3",
"B": "8;8q21.12",
"C": "20;20p11.21",
"D": "X;Xp21.3-p21.2"
} | C |
47e1e43bc2aee6548316d85c0fd3c2d3983fa5e08d025c9846dcef9ed205aa6f | single_choice | chromosome | Select the chromosome location of LOC284798 gene. | {
"A": "3;3q22",
"B": "1;1p31.3",
"C": "20;20p11.21",
"D": "4;4p14-p13"
} | C |
3ac0cc094e0c19d67fa881e447fdeceee4025a69c8b18fdc99090f1b07a3064f | single_choice | chromosome | Select the chromosome location of LOC284898 gene. | {
"A": "22;22q12.1",
"B": "2;2q23.2-q23.3",
"C": "X;Xp21.2-p21.1",
"D": "3;3q13.2"
} | A |
8bdaeafa9388c3c2fa4d1b3ad571b5996f6131029cd89c5f847f42b369df6935 | single_choice | chromosome | Select the chromosome location of LOC284912 gene. | {
"A": "18;18q21",
"B": "13;13q13.3-q14.11",
"C": "22;22q12.3",
"D": "1;1p36.21"
} | C |
1b694c12a89ecf43fdfe9400395e22d4eae5cd5d839da3f4d40fc58cb8ed42ce | single_choice | chromosome | Select the chromosome location of LOC284933 gene. | {
"A": "21;21q22.12-q22.13",
"B": "22;22q13.32",
"C": "8;8p21.2",
"D": "6;6p24.2"
} | B |
88e51060b848076f35ecc402ab26f2d8a8d6689286dfae075084cdcda5c70709 | single_choice | chromosome | Select the chromosome location of LOC284950 gene. | {
"A": "15;15q25.1-q26.1",
"B": "2;2p11.2",
"C": "1;1p31-p21",
"D": "1;1q21-q23"
} | B |
0c809b3bdd45c9b291e56ed6f24f22632936c49aa56a8e240d8ea989bc551cae | single_choice | chromosome | Select the chromosome location of LOC285097 gene. | {
"A": "19;19p12",
"B": "9;9p13.3-p13.2",
"C": "2;2q37.3",
"D": "11;11p15.1-p14.3"
} | C |
35de42c268571d79cd991e7edcdb4cc86062782c287b070032fc03b6c79585bb | single_choice | chromosome | Select the chromosome location of LOC285191 gene. | {
"A": "2;2q37.3",
"B": "7;7p14.2",
"C": "2;2p16.1-p15",
"D": "18;18q21.1-q21.2"
} | A |
b98e3e06397d7a71ed29c0ba38244b58c57da7557738638c6ca30618898a9ea9 | single_choice | chromosome | Select the chromosome location of LOC285232 gene. | {
"A": "13;13q12.12|13q12.1-q12.3",
"B": "15;15q22.31",
"C": "3;3p12.1",
"D": "11;11q22-qter"
} | C |
2f0f4449d57ad620b7b9bc6f037a31d2001b7681007cac2b27817359cbf497be | single_choice | chromosome | Select the chromosome location of LOC285422 gene. | {
"A": "6;6q25.3",
"B": "4;4q31.21",
"C": "1;1q25.1-q25.2",
"D": "2;2p14-p13.3"
} | B |
551959ee96df56fe56b2c2fb06e6a98d5b1e6986d9b7911ed3a38d37e1bfca06 | single_choice | chromosome | Select the chromosome location of LOC285442 gene. | {
"A": "4;4q35.2",
"B": "X|Y;Xp22.33 and Yp11",
"C": "8;8q24.23",
"D": "6;6p12.1-p11.2"
} | A |
a3da306c8da6f45c4e6fefa42425a8ef22640b7dc6ca0b119d1e7fb8b546881e | single_choice | chromosome | Select the chromosome location of LOC285453 gene. | {
"A": "4;4q12",
"B": "7;7q21.12",
"C": "12;12p13.3",
"D": "11;11q23.3"
} | A |
71b08e93e9885e000318a64e888904f4b54e6802098b3e4c31fe803ef1e4aeb7 | single_choice | chromosome | Select the chromosome location of LOC285591 gene. | {
"A": "7;7q34-q36",
"B": "15;15q13",
"C": "5;5q35.1",
"D": "2;2q37.1"
} | C |
7b5156965fde987c1ad4548bc31906785706a1a65f766b4163be9bb3778380cf | single_choice | chromosome | Select the chromosome location of LOC285638 gene. | {
"A": "5;5q21.3",
"B": "20;20p12.3-p12.2",
"C": "X;Xq12-q13.1",
"D": "X;Xq21-q25"
} | A |
5b6bb75e5dc2a9825d0e75b50ddb425d75981241f2a59a68f4833ccd34b007ff | single_choice | chromosome | Select the chromosome location of LOC285762 gene. | {
"A": "1;1p12",
"B": "6;6q22.31",
"C": "10;10q",
"D": "16;16q21-q22.1"
} | B |
efcdf3cd9727e148c85327d27926df73e29a47be959bfd7d11060fe243c3d737 | single_choice | chromosome | Select the chromosome location of LOC285804 gene. | {
"A": "10;10q23-q24",
"B": "14;14q12",
"C": "6;6q27",
"D": "1;1q12-q24"
} | C |
2b9152193e621a40daffde2cb4d0a471e8378325f1e7fc60f833eca807d2398f | single_choice | chromosome | Select the chromosome location of LOC285819 gene. | {
"A": "6;6p22.2",
"B": "6;6p21.1-p12.2",
"C": "13;13q32-q33",
"D": "1;1q42"
} | A |
c62110b6e2c61772bbbb733a83ce03d5c0391a27f22beac9a826cef25164aaf0 | single_choice | chromosome | Select the chromosome location of LOC285847 gene. | {
"A": "6;6p21.31",
"B": "6;6p21.1",
"C": "18;18q21.31",
"D": "9;9q31-q32"
} | A |
8390d3ef4fde7b59ce9d537bb6f2086e9e6d9dd09e89bbb7447744e980367047 | single_choice | chromosome | Select the chromosome location of LOC285889 gene. | {
"A": "13;13q13.3-q21",
"B": "2;2p23.3",
"C": "7;7q36.3",
"D": "13;13q12.13"
} | C |
0d029a6a9bed1688d6efc0eca416ffe7d3e85e199abe47940dfe884938a3fb0d | single_choice | chromosome | Select the chromosome location of LOC286083 gene. | {
"A": "9;9p12",
"B": "8;8p23.3",
"C": "16;16p13.12-p13.11",
"D": "9;9q22.1"
} | B |
92dd2e4b228f80c932f9cfb08d3c06ba2d88452f5d93ec652b5ffd4c1d97cba8 | single_choice | chromosome | Select the chromosome location of LOC286177 gene. | {
"A": "5;5q21",
"B": "8;8q12.1",
"C": "9;9q33-q34",
"D": "18;18q12.1"
} | B |
09cd5e6b5cf51c23819a6e5d92fef4bb8aa2d8e9eaeb5c1beb43281ecfa6b196 | single_choice | chromosome | Select the chromosome location of LOC286297 gene. | {
"A": "12;12q24.1",
"B": "6;6q25.2-q25.3",
"C": "4;4q21-q23",
"D": "9;9q13"
} | D |
692c9256d8b6aebffcb18d811bfec53873eeee932bc7c2ea97b3cfdb10648419 | single_choice | chromosome | Select the chromosome location of LOC286359 gene. | {
"A": "6;6p24.3-p24.2",
"B": "9;9q22.33",
"C": "X;Xq21.2",
"D": "6;6p21"
} | B |
60aadb8a91f57559b2fbebd9d4d53ade0c2921bd028076b49b1bf6279b2e11ca | single_choice | chromosome | Select the chromosome location of LOC286437 gene. | {
"A": "21;21q22.12-q22.13",
"B": "7;7p15-p13",
"C": "13;13q32.3",
"D": "X;Xq22.2"
} | D |
066a7fbedd8c11b768a3bce691b8e8fac17ff5ae6ba760a96cf3cad8c7f75b7d | single_choice | chromosome | Select the chromosome location of LOC317727 gene. | {
"A": "4;4q13.2-q13.3",
"B": "7;7q21-q22",
"C": "7;7p21.1",
"D": "18;18p11.21"
} | C |
0827abe3939c416eebd435a42cebe12bdf5b79add6a008b5d4a74d9c4791525f | single_choice | chromosome | Select the chromosome location of LOC338694 gene. | {
"A": "X;Xp21.3-p21.2",
"B": "X;Xq27.3-q28",
"C": "11;11q13.3",
"D": "3;3p21.1-p14.3"
} | C |
ea027ffb85d7f5a66259795167c1fb3ecefe22afbc6c698a4d58ee476ec55465 | single_choice | chromosome | Select the chromosome location of LOC338963 gene. | {
"A": "X|Y;Xp22.33 and Yp11",
"B": "Y;Yq11.23-q12",
"C": "8;8q21",
"D": "15;15q25.2"
} | D |
7174ec168fb293f5a6c3ff5c4fc9d5ac31b40f51725028f106e8d9061253b87f | single_choice | chromosome | Select the chromosome location of LOC339166 gene. | {
"A": "16;16p12.2|16p12.2",
"B": "8;8q12.2-q12.3",
"C": "3;3q25.33-q26.1",
"D": "17;17p13.2"
} | D |
da1580f88ca08265e3c57c2acdc5585f9b63ca856866a9c49a5eb26344d1d68b | single_choice | chromosome | Select the chromosome location of LOC339260 gene. | {
"A": "4;4q27",
"B": "17;17p11.2",
"C": "7;7q36.3",
"D": "19;19q13.11-q13.12"
} | B |
a6d1ddcf8db8ead6a7fe796c103667b8794593507ce7707ffcb157a23ad8cc0c | single_choice | chromosome | Select the chromosome location of LOC339298 gene. | {
"A": "18;18q23",
"B": "4;4q33",
"C": "11;11q14.1",
"D": "6;6q11-q14"
} | A |
e12a1fa7c52b35e876880c3485d1d3a3fb9a4d5dbace27543d6c52a6be2ce529 | single_choice | chromosome | Select the chromosome location of LOC339352 gene. | {
"A": "6;6q16.3-q22.31",
"B": "19;19q13.41",
"C": "11;11p14.3",
"D": "19;19q13.4"
} | B |
cfa1e49bad5c6eb676299eb51170cda2e4076167e8e0fe90d3a5f76a025dd26f | single_choice | chromosome | Select the chromosome location of LOC339539 gene. | {
"A": "1;1p36.23",
"B": "9;9p21.2-p21.1",
"C": "14;14q22.1-q24.2",
"D": "1;1p34.2"
} | D |
da534c43abcaefd99223be00210fa20d1ee6c9254a735afabba7244b96b07755 | single_choice | chromosome | Select the chromosome location of LOC339593 gene. | {
"A": "21;21q21.2",
"B": "20;20p12.2",
"C": "1;1p21-p13.3",
"D": "21;21q21.2-q21.3"
} | B |
End of preview.
🧬 SciHorizon-GENE
SciHorizon-GENE is a large-scale benchmark for evaluating the capability of large language models (LLMs) to perform understanding-to-reasoning in human gene knowledge.
It focuses on assessing whether LLMs can reliably infer biological function and interpretation from gene-level knowledge - a core requirement for knowledge-driven biological analysis.
🔗 Project Page: https://horizon.scidb.cn/verticalCategory/SciHorizonGene
🔗 Github Repository: https://github.com/XiaohanHwang/SciHorizonGene
📖 Overview
SciHorizon-GENE is a large-scale gene-centric benchmark constructed from authoritative biological databases to systematically evaluate LLM performance in gene-level biological understanding and reasoning.
The benchmark is designed to analyze model behavior in realistic scientific scenarios and to identify limitations that affect the reliability of LLMs in biological research settings.
🧬 Dataset & Benchmark Scale
SciHorizon-GENE integrates curated knowledge for:
- 190K+ human genes
- 540K+ gene-centric questions
All questions are constructed from authoritative biological databases and curated knowledge sources, ensuring high biological relevance and scientific grounding.
📊 Intended Use
This benchmark is NOT intended for:
- Clinical diagnosis
- Medical treatment decisions
- Any real-world healthcare deployment
SciHorizon-GENE is for research and evaluation purposes only.
🌐 SciHorizon Project
For more information about the SciHorizon project:
👉 https://horizon.scidb.cn
📑Paper:
Qin C, Chen X, Wang C, et al. Scihorizon: Benchmarking ai-for-science readiness from scientific data to large language models[C]//Proceedings of the 31st ACM SIGKDD Conference on Knowledge Discovery and Data Mining V. 2. 2025: 5754-5765.
📄 Citation
If you use this benchmark, please cite:
SciHorizon-GENE: Benchmarking LLM for Life Sciences Inference from Gene Knowledge to Functional Understanding
arXiv: https://arxiv.org/abs/2601.12805
@article{huang2026scihorizon,
title={SciHorizon-GENE: Benchmarking LLM for Life Sciences Inference from Gene Knowledge to Functional Understanding},
author={Huang, Xiaohan and Xiao, Meng and Qin, Chuan and Long, Qingqing and Chen, Jinmiao and Zhou, Yuanchun and Zhu, Hengshu},
journal={arXiv preprint arXiv:2601.12805},
year={2026}
}
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