biomedkg-database / README.md
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BioMedKG Database Dump

Database export from zeus_prod (MySQL 9.5), exported 2026-02-18.

Contents

File Table Records Description
schema.sql.gz All tables - CREATE TABLE statements only
triplet.sql.gz triplet_v20251201_3ed2ee 2,060,480 All triplets (MDKG + ADKG)
entity.sql.gz entity_v20251201_90af60 191,340 Entity definitions
context_information.sql.gz context_information_v20251201_64b4b9 1,147,853 Article metadata
meta_tables.sql.gz relation, source, table_status ~20 Reference tables

Restore

# Create database
mysql -u root -e "CREATE DATABASE zeus_prod CHARACTER SET utf8mb4 COLLATE utf8mb4_unicode_ci;"

# Restore schema first
gunzip -c schema.sql.gz | mysql -u root zeus_prod

# Restore data (order matters for foreign keys)
gunzip -c entity.sql.gz | mysql -u root zeus_prod
gunzip -c meta_tables.sql.gz | mysql -u root zeus_prod
gunzip -c triplet.sql.gz | mysql -u root zeus_prod
gunzip -c context_information.sql.gz | mysql -u root zeus_prod

Database Identifiers

  • db_identifier = 0: MDKG (988K triplets)
  • db_identifier = 1: ADKG (1.07M triplets)