repo stringlengths 2 99 | file stringlengths 14 239 | code stringlengths 20 3.99M | file_length int64 20 3.99M | avg_line_length float64 9.73 128 | max_line_length int64 11 86.4k | extension_type stringclasses 1
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BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/loading.py | from pathlib import Path
import mmcv
import numpy as np
from mmcv.fileio import FileClient
from mmedit.core.mask import (bbox2mask, brush_stroke_mask, get_irregular_mask,
random_bbox)
from ..registry import PIPELINES
@PIPELINES.register_module()
class LoadImageFromFile:
"""Load ima... | 19,292 | 34.206204 | 79 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/crop.py | import math
import random
import mmcv
import numpy as np
from torch.nn.modules.utils import _pair
from ..registry import PIPELINES
from .utils import random_choose_unknown
@PIPELINES.register_module()
class Crop:
"""Crop data to specific size for training.
Args:
keys (Sequence[str]): The images to ... | 28,291 | 36.722667 | 79 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/augmentation.py | import copy
import math
import numbers
import os
import os.path as osp
import random
import cv2
import mmcv
import numpy as np
import torchvision.transforms as transforms
from PIL import Image
from ..registry import PIPELINES
@PIPELINES.register_module()
class Resize:
"""Resize data to a specific size for train... | 46,436 | 35.081585 | 79 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/matting_aug.py | import os.path as osp
import random
import cv2
import mmcv
import numpy as np
from mmcv.fileio import FileClient
from ..registry import PIPELINES
from .utils import adjust_gamma, random_choose_unknown
def add_gaussian_noise(img, mu, sigma):
img = img.astype(np.float32)
gauss_noise = np.random.normal(mu, sig... | 24,538 | 37.766193 | 81 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/compose.py | from collections.abc import Sequence
from mmcv.utils import build_from_cfg
from ..registry import PIPELINES
@PIPELINES.register_module()
class Compose:
"""Compose a data pipeline with a sequence of transforms.
Args:
transforms (list[dict | callable]):
Either config dicts of transforms o... | 1,620 | 29.018519 | 73 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/random_degradations.py | import io
import logging
import random
import cv2
import numpy as np
from mmedit.datasets.pipelines import blur_kernels as blur_kernels
from ..registry import PIPELINES
try:
import av
has_av = True
except ImportError:
has_av = False
@PIPELINES.register_module()
class RandomBlur:
"""Apply random blu... | 18,941 | 33.007181 | 79 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/utils.py | import logging
import numpy as np
import torch
from mmcv.utils import print_log
_integer_types = (
np.byte,
np.ubyte, # 8 bits
np.short,
np.ushort, # 16 bits
np.intc,
np.uintc, # 16 or 32 or 64 bits
np.int_,
np.uint, # 32 or 64 bits
np.longlong,
np.ulonglong) # 64 bits
_i... | 4,623 | 28.832258 | 79 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/random_down_sampling.py | import math
import numpy as np
import torch
from mmcv import imresize
from ..registry import PIPELINES
@PIPELINES.register_module()
class RandomDownSampling:
"""Generate LQ image from GT (and crop), which will randomly pick a scale.
Args:
scale_min (float): The minimum of upsampling scale, inclusiv... | 4,735 | 36.587302 | 79 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/formating.py | from collections.abc import Sequence
import mmcv
import numpy as np
import torch
from mmcv.parallel import DataContainer as DC
from torch.nn import functional as F
from ..registry import PIPELINES
def to_tensor(data):
"""Convert objects of various python types to :obj:`torch.Tensor`.
Supported types are: :... | 8,262 | 30.299242 | 78 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/matlab_like_resize.py | # This code is referenced from matlab_imresize with modifications
import numpy as np
from ..registry import PIPELINES
def get_size_from_scale(input_size, scale_factor):
"""Get the output size given input size and scale factor.
Args:
input_size (tuple): The size of the input image.
scale_fact... | 9,022 | 31.692029 | 88 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/generate_assistant.py | import numpy as np
import torch
from ..registry import PIPELINES
from .utils import make_coord
@PIPELINES.register_module()
class GenerateHeatmap:
"""Generate heatmap from keypoint.
Args:
keypoint (str): Key of keypoint in dict.
ori_size (int | Tuple[int]): Original image size of keypoint.
... | 6,056 | 34.629412 | 78 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/datasets/pipelines/normalization.py | import mmcv
import numpy as np
from ..registry import PIPELINES
@PIPELINES.register_module()
class Normalize:
"""Normalize images with the given mean and std value.
Required keys are the keys in attribute "keys", added or modified keys are
the keys in attribute "keys" and these keys with postfix '_norm_... | 3,396 | 31.663462 | 78 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/utils/logger.py | import logging
from mmcv.utils import get_logger
def get_root_logger(log_file=None, log_level=logging.INFO):
"""Get the root logger.
The logger will be initialized if it has not been initialized. By default a
StreamHandler will be added. If `log_file` is specified, a FileHandler will
also be added. ... | 968 | 33.607143 | 79 | py |
BasicVSR_PlusPlus | BasicVSR_PlusPlus-master/mmedit/utils/cli.py | import re
import sys
import warnings
def modify_args():
for i, v in enumerate(sys.argv):
if i == 0:
assert v.endswith('.py')
elif re.match(r'--\w+_.*', v):
new_arg = v.replace('_', '-')
warnings.warn(
f'command line argument {v} is deprecated, '
... | 511 | 25.947368 | 60 | py |
SLOPpy | SLOPpy-main/SLOPpy_Run.py | import SLOPpy
import argparse
import os
import sys
import collections
if __name__ == '__main__':
SLOPpy.sloppy_run()
| 123 | 11.4 | 26 | py |
SLOPpy | SLOPpy-main/setup.py | from setuptools import setup
# Inspired from here:
# https://hynek.me/articles/sharing-your-labor-of-love-pypi-quick-and-dirty/
# read the contents of your README file
from pathlib import Path
this_directory = Path(__file__).parent
long_description = (this_directory / "README.md").read_text()
setup(
name="SLOPpy... | 1,994 | 31.177419 | 90 | py |
SLOPpy | SLOPpy-main/scripts/planetary_velocity_plot.py | """from classes.kepler_exo import *
# Mass of the star HD189733 (in Solar masses)
#Ms = 0.823
Ms = 1.148
# Mass of the planet (in Solar masses)
#Mp = 1.138 / 1.047348644e3
Mp = 0.69 / 1.047348644e3
K1 = kepler_K1(Mp,Ms,3.52474854657,86.59,0.0082)
print K1
## update
"""
import matplotlib.pyplot as plt
import numpy ... | 1,531 | 26.357143 | 131 | py |
SLOPpy | SLOPpy-main/scripts/absorption_depths.py | import numpy as np
import matplotlib.pyplot as plt
import cPickle as pickle
#w,f1,f2,f3,fall,sigma=np.loadtxt('/home/sicilia/Astro/Wyttenbach/HD189733_589289_1200_transmission_spectrum_TransSpec_atmcorr.rdb',unpack=True,skiprows=2)
#w,t1,sigma=np.loadtxt('/home/sicilia/Astro/Wyttenbach/transmission_spectrum_1.rdb',unp... | 8,507 | 45.747253 | 155 | py |
SLOPpy | SLOPpy-main/scripts/planetary_velocity.py | """from classes.kepler_exo import *
# Mass of the star HD189733 (in Solar masses)
#Ms = 0.823
Ms = 1.148
# Mass of the planet (in Solar masses)
#Mp = 1.138 / 1.047348644e3
Mp = 0.69 / 1.047348644e3
K1 = kepler_K1(Mp,Ms,3.52474854657,86.59,0.0082)
print K1
## update
"""
import matplotlib.pyplot as plt
import numpy ... | 2,556 | 35.014085 | 131 | py |
SLOPpy | SLOPpy-main/SLOPpy/transmission_spectrum_shortcuts.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.transmission_spectrum import *
from SLOPpy.transmission_spectrum_average import *
#__all__ = ['compute_transmission_spectrum_planetRF_iterative',
# 'plot_transmi... | 8,420 | 45.783333 | 136 | py |
SLOPpy | SLOPpy-main/SLOPpy/pca_preparation.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.plot_subroutin... | 5,114 | 37.458647 | 124 | py |
SLOPpy | SLOPpy-main/SLOPpy/transmission_spectrum.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.math_functions... | 44,684 | 51.447183 | 146 | py |
SLOPpy | SLOPpy-main/SLOPpy/transmission_binned_mcmc.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.constants import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts impo... | 77,242 | 45.475933 | 141 | py |
SLOPpy | SLOPpy-main/SLOPpy/interstellar_lines.bkp.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcuts import *
__all__ = ["compute_interstellar_l... | 8,408 | 38.478873 | 129 | py |
SLOPpy | SLOPpy-main/SLOPpy/transmission_spectrum_average.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
__all__ = [
'compute_trans... | 15,311 | 44.981982 | 174 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_molecfit.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 30,915 | 44.801481 | 122 | py |
SLOPpy | SLOPpy-main/SLOPpy/quick_transmission.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.plot_subroutin... | 5,497 | 40.651515 | 103 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_molecfit_v1.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 31,063 | 44.749632 | 122 | py |
SLOPpy | SLOPpy-main/SLOPpy/second_telluric_correction_on_transmission.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from scipy.stats import linregress
... | 7,683 | 40.76087 | 132 | py |
SLOPpy | SLOPpy-main/SLOPpy/clv_rm_modelling.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.constants import *
from SLOPpy.subroutines.kepler_exo import *
from SLOPpy.subroutines.plot_subroutines import ... | 20,737 | 48.971084 | 119 | py |
SLOPpy | SLOPpy-main/SLOPpy/clv_rm_models.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.constants import *
from SLOPpy.subroutines.kepler_exo import *
from SLOPpy.subroutines.plot_subroutines import ... | 30,251 | 46.566038 | 190 | py |
SLOPpy | SLOPpy-main/SLOPpy/transmission_lightcurve_average.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.rebin_subrouti... | 16,394 | 47.794643 | 145 | py |
SLOPpy | SLOPpy-main/SLOPpy/differential_refraction.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.plot_subroutin... | 32,600 | 48.395455 | 120 | py |
SLOPpy | SLOPpy-main/SLOPpy/transmission_lightcurve.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.rebin_subrouti... | 25,556 | 51.58642 | 151 | py |
SLOPpy | SLOPpy-main/SLOPpy/differential_refraction_preparation.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.plot_subroutin... | 10,775 | 47.981818 | 113 | py |
SLOPpy | SLOPpy-main/SLOPpy/sysrem_correction.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.plot_subroutin... | 8,372 | 34.935622 | 131 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_template_alternative.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 28,925 | 45.654839 | 131 | py |
SLOPpy | SLOPpy-main/SLOPpy/prepare_datasets.py | from __future__ import print_function, division
from SLOPpy.instruments.get_data import *
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcuts import *
... | 33,511 | 49.092676 | 144 | py |
SLOPpy | SLOPpy-main/SLOPpy/master_out.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.rebin_subrouti... | 16,971 | 43.197917 | 116 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_template.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 19,545 | 43.221719 | 121 | py |
SLOPpy | SLOPpy-main/SLOPpy/spectra_lightcurve_bkp.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.rebin_subrouti... | 21,465 | 44.478814 | 132 | py |
SLOPpy | SLOPpy-main/SLOPpy/interstellar_lines.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcuts import *
__all__ = ["compute_interstellar_l... | 14,029 | 44.700326 | 121 | py |
SLOPpy | SLOPpy-main/SLOPpy/compare_clv_rm_effects.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
__all__ = ['plot_compare_clv_rm_effec... | 4,395 | 45.273684 | 114 | py |
SLOPpy | SLOPpy-main/SLOPpy/spectra_lightcurve_average.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.rebin_subrouti... | 17,778 | 49.652422 | 166 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_airmass_stellarRF.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortc... | 16,023 | 43.885154 | 131 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_airmass_observerRF_chunks.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
__all__ = ["compute_telluric_airmass_... | 10,263 | 48.346154 | 120 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_molecfit_coadd.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 23,722 | 45.976238 | 141 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_observerRF_skycalc.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 14,532 | 46.338762 | 138 | py |
SLOPpy | SLOPpy-main/SLOPpy/clv_rm_models_lines.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.constants import *
from SLOPpy.subroutines.kepler_exo import *
from SLOPpy.subroutines.plot_subroutines import ... | 39,165 | 44.808187 | 190 | py |
SLOPpy | SLOPpy-main/SLOPpy/write_output_transmission.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.math_functions... | 39,983 | 48.917603 | 146 | py |
SLOPpy | SLOPpy-main/SLOPpy/transmission_spectrum_preparation.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.plot_subroutin... | 13,646 | 42.32381 | 163 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_molecfit_v1_preparation.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 5,343 | 38.007299 | 119 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_molecfit_v1_coadd.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 22,214 | 44.244399 | 118 | py |
SLOPpy | SLOPpy-main/SLOPpy/spectra_lightcurve.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.rebin_subrouti... | 36,599 | 50.260504 | 144 | py |
SLOPpy | SLOPpy-main/SLOPpy/differential_refraction.bkp.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.shortcuts import *
__all__ = ["compute_differential_refr... | 25,301 | 47.378585 | 119 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_molecfit_preparation.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 5,335 | 37.948905 | 119 | py |
SLOPpy | SLOPpy-main/SLOPpy/telluric_airmass_observerRF.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 22,627 | 46.537815 | 125 | py |
SLOPpy | SLOPpy-main/SLOPpy/sloppy_run.py | import SLOPpy
import argparse
import os
import sys
import collections
def sloppy_run():
print()
print('SLOPpy v{0}'.format(SLOPpy.__version__))
print()
print('Python version in use:')
print(sys.version)
#if sys.version_info[0] == 3 and sys.version_info[1] > 7:
# print('WARNING MESSAGES ... | 24,000 | 51.749451 | 139 | py |
SLOPpy | SLOPpy-main/SLOPpy/transmission_mcmc.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.constants import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts impo... | 56,597 | 46.24374 | 159 | py |
SLOPpy | SLOPpy-main/SLOPpy/check_differential_refraction.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
from SLOPpy.subroutines.shortcu... | 23,686 | 45.083658 | 143 | py |
SLOPpy | SLOPpy-main/SLOPpy/sky_correction.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.plot_subroutines import *
__all__ = ["compute_sky_correc... | 7,124 | 43.53125 | 113 | py |
SLOPpy | SLOPpy-main/SLOPpy/write_output_spectra.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.spectral_subroutines import *
from SLOPpy.subroutines.io_subroutines import *
from SLOPpy.subroutines.fit_subroutines import *
from SLOPpy.subroutines.shortcuts import *
from SLOPpy.subroutines.rebin_subrouti... | 5,351 | 43.97479 | 123 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/rebin_subroutines.py | from __future__ import print_function, division
import numpy as np
from scipy.interpolate import interp1d
from SLOPpy.subroutines.constants import *
def shift_wavelength(wave, step, rv_shift):
wave_shift = rv_shift / speed_of_light_km + 1.00000
return wave * wave_shift, step * wave_shift
def shift_wavelengt... | 13,958 | 33.8975 | 120 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/plot_subroutines.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
def make_color_array(lists, input_data):
""" Creation of the color array, based on the BJD of the observations
"""
bjd = []
am = []
for obs in lists['observations']:
bjd.append(input_data[obs]['BJD'] - ... | 4,351 | 31 | 83 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/constants.py |
from __future__ import division # no more "zero" integer division bugs!:P
import numpy as np # array
# radiants, degrees conversions etc.
pi = 4.*np.arctan(1.)
dpi = 2.*pi
deg2rad = pi/180.
rad2deg = 180./pi
# various
TOLERANCE = np.finfo(np.float64(1.0)).eps
d2s = 86400. # seconds in a day = 24h = 86400 s
d2m ... | 2,781 | 28.595745 | 73 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/fit_subroutines.py | from __future__ import print_function, division
import numpy as np
from scipy.linalg import lstsq
from scipy.optimize import curve_fit
from sklearn import linear_model, datasets
def berv_telluric_curvefit(xdata, p0, p1, p2):
return xdata[0] * p0 + xdata[1] * p1 + p2
def berv_linear_curve_fit(airmass, berv, logi... | 3,592 | 27.975806 | 94 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/smooth_subroutines.py | from __future__ import print_function, division
import numpy as np
def smooth(x, window_len=5, window='hanning'):
"""smooth the data using a window with requested size.
This method is based on the convolution of a scaled window with the signal.
The signal is prepared by introducing reflected copies of the... | 2,109 | 31.461538 | 121 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/bayesian_emcee.py | from SLOPpy.subroutines.common import *
import os
from SLOPpy.subroutines.mcmc_fit_functions import *
from SLOPpy.subroutines.math_functions import interpolate2d_grid_nocheck
#from SLOPpy.subroutines.interpol import interpolate1d_grid_nocheck
from multiprocessing import Pool
import emcee
import time
# define theta ... | 15,492 | 32.827511 | 118 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/clv_rm_subroutines.py | import numpy as np
from SLOPpy.subroutines.rebin_subroutines import *
def clv_rm_correction_factor_computation(clv_rm_modelling, wave, step, rv_shift, obs):
ancillary = {}
ancillary['norm_convolved_shifted'] = \
rebin_1d_to_1d(clv_rm_modelling['common']['wave'],
clv_rm_modelli... | 1,724 | 40.071429 | 114 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/mcmc_fit_functions.py | import numpy as np
from SLOPpy.subroutines.math_functions import interpolate2d_grid_nocheck
from SLOPpy.subroutines.constants import *
def compute_single_line(wave_meshgrid, planet_RVsinusoid, planet_K, line_array):
""" computing the spectral shift in RV """
rv_shift = planet_K * planet_RVsinusoid
line_m... | 48,048 | 33.345247 | 135 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/kepler_exo.py | import numpy as np
from scipy.optimize import fsolve
import SLOPpy.subroutines.constants as constants
# +
# NAME:
# exofast_keplereq
# PURPOSE:
# Solve Kepler's Equation
# DESCRIPTION:
# Solve Kepler's Equation. Method by S. Mikkola (1987) Celestial
# Mechanics, 40 , 329-334.
# result from Mikkola th... | 11,085 | 34.993506 | 139 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/common.py | import sys
import os
import matplotlib.pyplot as plt
from matplotlib.gridspec import GridSpec
from matplotlib.colors import Normalize
import numpy as np
import scipy.stats as sci_stats
import scipy.optimize as sci_optimize
import scipy.interpolate as sci_int
from astropy.io import fits
import json
import warnings
impor... | 3,093 | 42.577465 | 136 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/math_functions.py | import numpy as np
from scipy.optimize import curve_fit
def interpolate1d_grid_nocheck(val, arr_1, arr_2):
# using enumerate() + next() to find index of
# first element just greater than 0.6
res = next(x for x, v in enumerate(arr_1) if v > val)
interp_out = (val-arr_1[res-1])/(arr_1[res]-arr_1[res-1... | 1,020 | 35.464286 | 116 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/eso_skycalc_cli.py | from __future__ import print_function, division
from SLOPpy.subroutines.common import *
from SLOPpy.subroutines.io_subroutines import get_filename
def get_eso_sckycalc_harps(obs_ref, wave_range, ra, dec, night, output):
# https://www.eso.org/observing/etc/doc/skycalc/helpskycalccli.html
time_tag = obs_ref[6... | 2,761 | 33.098765 | 120 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/io_subroutines.py | from __future__ import print_function, division
import numpy as np
try:
import cPickle as pickle
except:
import pickle
import os
from os import path
import oyaml as yaml
from SLOPpy.subroutines.object_parameters import StarParameters, PlanetParameters
from SLOPpy.config_default import *
__all__ = ["save_to_cp... | 14,538 | 31.525727 | 116 | py |
SLOPpy | SLOPpy-main/SLOPpy/subroutines/spectral_subroutines.py | from __future__ import print_function, division
import numpy as np
from astropy.io import fits
from SLOPpy.subroutines.rebin_subroutines import *
from SLOPpy.subroutines.constants import *
""" Empty module left here for back-compatibility, as almost every module
is importing this one rather than the rebin_subrout... | 1,883 | 46.1 | 151 | py |
SLOPpy | SLOPpy-main/SLOPpy/instruments/PEPSI_reduced.py | import numpy as np
from astropy.io import fits
from SLOPpy.subroutines.rebin_subroutines import *
from SLOPpy.subroutines import constants
from SLOPpy.subroutines.common import *
from astropy.coordinates import SkyCoord
from astropy import units as u
def PEPSI_get_instrument_keywords():
properties = {
# ... | 7,474 | 39.188172 | 131 | py |
SLOPpy | SLOPpy-main/SLOPpy/instruments/HARPS_DRSv3.py | from __future__ import print_function, division
from SLOPpy.instruments.common_DRSv3 import *
def HARPSv3_get_instrument_keywords():
""" These definitions applt to DRS version 3.x """
keywords = {
'header_rvc': 'HIERARCH ESO DRS CCF RVC',
'header_berv': 'HIERARCH ESO DRS BERV',
'header... | 5,356 | 46.830357 | 162 | py |
SLOPpy | SLOPpy-main/SLOPpy/instruments/HARPN_DRSv3.py | from __future__ import print_function, division
from SLOPpy.instruments.common_DRSv3 import *
def HARPNv3_get_instrument_keywords():
""" These definitions applt to DRS version 3.x """
keywords = {
'header_rvc': 'HIERARCH TNG DRS CCF RVC',
'header_berv': 'HIERARCH TNG DRS BERV',
'header... | 5,057 | 46.716981 | 162 | py |
SLOPpy | SLOPpy-main/SLOPpy/instruments/common_DRSv3.py | import numpy as np
from astropy.io import fits
from SLOPpy.subroutines.rebin_subroutines import *
from SLOPpy.subroutines.constants import *
from SLOPpy.subroutines.common import *
def DRSv3_map_orders_AB(properties, order_selection):
n_orders_A = properties['n_orders_A']
map_orders_A_full = np.arange(0, n_or... | 12,657 | 40.366013 | 135 | py |
SLOPpy | SLOPpy-main/SLOPpy/instruments/get_data.py | from __future__ import print_function, division
import numpy as np
from astropy.io import fits
from SLOPpy.subroutines.rebin_subroutines import *
from SLOPpy.subroutines.constants import *
from SLOPpy.instruments.HARPN_DRSv3 import *
from SLOPpy.instruments.HARPS_DRSv3 import *
from SLOPpy.instruments.PEPSI_reduced imp... | 1,669 | 51.1875 | 150 | py |
BehaviorTree.CPP | BehaviorTree.CPP-master/convert_v3_to_v4.py | """Converts BehaviorTree.CPP V3 compatible tree xml files to V4 format.
"""
import argparse
import copy
import logging
import sys
import typing
import xml.etree.ElementTree as ET
logger = logging.getLogger(__name__)
def strtobool(val: typing.Union[str, int, bool]) -> bool:
"""``distutils.util.strtobool`` equiva... | 5,144 | 28.739884 | 86 | py |
EPSANet | EPSANet-master/main.py | import argparse
import os
import random
import shutil
import time
import warnings
import torch
import torch.nn as nn
import torch.nn.parallel
import torch.backends.cudnn as cudnn
import torch.distributed as dist
import torch.optim
import torch.utils.data
import torch.utils.data.distributed
import torchvision.transform... | 15,032 | 34.707838 | 114 | py |
EPSANet | EPSANet-master/loss.py | import torch
import numpy as np
from torch import nn
from torch.autograd import Variable
import torch.nn.functional as F
class CrossEntropyLabelSmooth(nn.Module):
"""Cross entropy loss with label smoothing regularizer.
Reference:
Szegedy et al. Rethinking the Inception Architecture for Computer Vision. CVP... | 1,320 | 36.742857 | 91 | py |
EPSANet | EPSANet-master/models/SE_weight_module.py |
import torch.nn as nn
class SEWeightModule(nn.Module):
def __init__(self, channels, reduction=16):
super(SEWeightModule, self).__init__()
self.avg_pool = nn.AdaptiveAvgPool2d(1)
self.fc1 = nn.Conv2d(channels, channels//reduction, kernel_size=1, padding=0)
self.relu = nn.ReLU(inpla... | 651 | 30.047619 | 85 | py |
EPSANet | EPSANet-master/models/epsanet.py | import torch
import torch.nn as nn
import math
from .SE_weight_module import SEWeightModule
def conv(in_planes, out_planes, kernel_size=3, stride=1, padding=1, dilation=1, groups=1):
"""standard convolution with padding"""
return nn.Conv2d(in_planes, out_planes, kernel_size=kernel_size, stride=stride,
... | 6,122 | 35.664671 | 113 | py |
trieste-develop | trieste-develop/setup.py | from pathlib import Path
from setuptools import find_packages, setup
with open("README.md", "r") as file:
long_description = file.read()
setup(
name="trieste",
version=Path("trieste/VERSION").read_text().strip(),
author="The Trieste contributors",
author_email="labs@secondmind.ai",
descriptio... | 1,939 | 33.642857 | 89 | py |
trieste-develop | trieste-develop/trieste/bayesian_optimizer.py |
"""
This module contains the :class:`BayesianOptimizer` class, used to perform Bayesian optimization.
"""
from __future__ import annotations
import copy
import traceback
import warnings
from collections import Counter
from dataclasses import dataclass
from pathlib import Path
from typing import (
Any,
Callab... | 46,324 | 40.39857 | 100 | py |
trieste-develop | trieste-develop/trieste/ask_tell_optimization.py |
"""
This module contains the Ask/Tell API for users of Trieste who would like to
perform Bayesian Optimization with external control of the optimization loop.
"""
from __future__ import annotations
from copy import deepcopy
from typing import Dict, Generic, Mapping, TypeVar, cast, overload
try:
import pandas a... | 17,459 | 37.886414 | 100 | py |
trieste-develop | trieste-develop/trieste/logging.py | """ This module contains logging utilities. """
from __future__ import annotations
import io
from contextlib import contextmanager
from typing import TYPE_CHECKING, Any, Callable, Iterator, Optional, TypeVar, Union
import absl
import tensorflow as tf
from tensorflow.python.eager import context
from trieste.types imp... | 7,102 | 30.153509 | 98 | py |
trieste-develop | trieste-develop/trieste/space.py | """ This module contains implementations of various types of search space. """
from __future__ import annotations
import operator
from abc import ABC, abstractmethod
from functools import reduce
from typing import Callable, Optional, Sequence, Tuple, TypeVar, Union, overload
import numpy as np
import scipy.optimize a... | 45,403 | 41.040741 | 100 | py |
trieste-develop | trieste-develop/trieste/data.py | """ This module contains utilities for :class:`~trieste.observer.Observer` data. """
from __future__ import annotations
from dataclasses import dataclass
from typing import Optional, Sequence
import tensorflow as tf
from trieste.types import TensorType
@dataclass(frozen=True)
class Dataset:
"""
Container f... | 8,597 | 41.147059 | 99 | py |
trieste-develop | trieste-develop/trieste/types.py | """This module contains type aliases."""
from typing import Callable, Hashable, Tuple, TypeVar, Union
import tensorflow as tf
TensorType = Union[tf.Tensor, tf.Variable]
"""Type alias for tensor-like types."""
S = TypeVar("S")
"""Unbound type variable."""
T = TypeVar("T")
"""Unbound type variable."""
State = Callab... | 1,272 | 33.405405 | 97 | py |
trieste-develop | trieste-develop/trieste/version.py | """This module exposes the trieste version number."""
from pathlib import Path
BASE_PATH = Path(__file__).parents[0]
VERSION = BASE_PATH / "VERSION"
__version__ = Path(VERSION).read_text().strip()
| 787 | 36.52381 | 74 | py |
trieste-develop | trieste-develop/trieste/observer.py | """ Definitions and utilities for observers of objective functions. """
from __future__ import annotations
from typing import Callable, Mapping, Union
import tensorflow as tf
from typing_extensions import Final
from .data import Dataset
from .types import Tag, TensorType
SingleObserver = Callable[[TensorType], Data... | 3,024 | 37.291139 | 100 | py |
trieste-develop | trieste-develop/trieste/objectives/single_objectives.py |
"""
This module contains toy objective functions, useful for experimentation. A number of them have been
taken from `this Virtual Library of Simulation Experiments
<https://web.archive.org/web/20211015101644/https://www.sfu.ca/~ssurjano/> (:cite:`ssurjano2021`)`_.
"""
from __future__ import annotations
import math
f... | 23,895 | 35.819723 | 100 | py |
trieste-develop | trieste-develop/trieste/objectives/multifidelity_objectives.py | """
This module contains synthetic multi-fidelity objective functions, useful for experimentation.
"""
from dataclasses import dataclass
import numpy as np
import tensorflow as tf
from ..space import Box, DiscreteSearchSpace, SearchSpace, TaggedProductSearchSpace
from ..types import TensorType
from .single_objectives... | 3,507 | 31.785047 | 100 | py |
trieste-develop | trieste-develop/trieste/objectives/utils.py |
"""
This module contains functions convenient for creating :class:`Observer` objects that return data
from objective functions, appropriately formatted for usage with the toolbox.
"""
from __future__ import annotations
from collections.abc import Callable
from typing import Optional, overload
from ..data import Dat... | 2,051 | 33.2 | 97 | py |
trieste-develop | trieste-develop/trieste/objectives/multi_objectives.py | """
This module contains synthetic multi-objective functions, useful for experimentation.
"""
from __future__ import annotations
import math
from dataclasses import dataclass
from functools import partial
import tensorflow as tf
from typing_extensions import Protocol
from ..space import Box
from ..types import Tenso... | 8,968 | 36.527197 | 99 | py |
trieste-develop | trieste-develop/trieste/models/utils.py |
"""
This module contains auxiliary objects and functions that are used by multiple model types.
"""
from __future__ import annotations
import gpflow
import tensorflow as tf
from gpflow.utilities.traversal import _merge_leaf_components, leaf_components
from .. import logging
from ..data import Dataset
from .interfac... | 4,316 | 40.114286 | 98 | py |
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