mauryzio commited on
Commit
df756ca
·
verified ·
1 Parent(s): b16c084

Regenerate with frame-mismatch exclusion and exact 8192 bp sequences

Browse files
Files changed (2) hide show
  1. README.md +21 -3
  2. syn_mouse/test-00000-of-00001.parquet +2 -2
README.md CHANGED
@@ -251,6 +251,8 @@ dataset_info:
251
  features:
252
  - name: benchmark_id
253
  dtype: string
 
 
254
  - name: annotation_source
255
  dtype: string
256
  - name: genome_assembly
@@ -269,12 +271,24 @@ dataset_info:
269
  dtype: string
270
  - name: chr
271
  dtype: string
 
 
272
  - name: strand
273
  dtype: string
274
  - name: cds_genome_start
275
  dtype: int64
276
  - name: cds_genome_end
277
  dtype: int64
 
 
 
 
 
 
 
 
 
 
278
  - name: transcript_id
279
  dtype: string
280
  - name: gene_id
@@ -285,6 +299,10 @@ dataset_info:
285
  dtype: int64
286
  - name: is_first_exon
287
  dtype: int64
 
 
 
 
288
  - name: cds_start_in_seq
289
  dtype: int64
290
  - name: cds_end_in_seq
@@ -311,10 +329,10 @@ dataset_info:
311
  dtype: string
312
  splits:
313
  - name: test
314
- num_bytes: 334604972
315
  num_examples: 20000
316
- download_size: 152298422
317
- dataset_size: 334604972
318
  ---
319
 
320
  # Carbon Perturbation Bench
 
251
  features:
252
  - name: benchmark_id
253
  dtype: string
254
+ - name: script_version
255
+ dtype: string
256
  - name: annotation_source
257
  dtype: string
258
  - name: genome_assembly
 
271
  dtype: string
272
  - name: chr
273
  dtype: string
274
+ - name: chrom_length
275
+ dtype: int64
276
  - name: strand
277
  dtype: string
278
  - name: cds_genome_start
279
  dtype: int64
280
  - name: cds_genome_end
281
  dtype: int64
282
+ - name: window_genome_start
283
+ dtype: int64
284
+ - name: window_genome_end
285
+ dtype: int64
286
+ - name: upstream_actual
287
+ dtype: int64
288
+ - name: downstream_actual
289
+ dtype: int64
290
+ - name: is_clamped
291
+ dtype: int64
292
  - name: transcript_id
293
  dtype: string
294
  - name: gene_id
 
299
  dtype: int64
300
  - name: is_first_exon
301
  dtype: int64
302
+ - name: frame
303
+ dtype: int64
304
+ - name: phase_gtf
305
+ dtype: int64
306
  - name: cds_start_in_seq
307
  dtype: int64
308
  - name: cds_end_in_seq
 
329
  dtype: string
330
  splits:
331
  - name: test
332
+ num_bytes: 336064778
333
  num_examples: 20000
334
+ download_size: 152659316
335
+ dataset_size: 336064778
336
  ---
337
 
338
  # Carbon Perturbation Bench
syn_mouse/test-00000-of-00001.parquet CHANGED
@@ -1,3 +1,3 @@
1
  version https://git-lfs.github.com/spec/v1
2
- oid sha256:d7c7c1c1e3d708ad744ece05f21ca7dd9f7df4680f309804ac895f9ff68c77a8
3
- size 152298422
 
1
  version https://git-lfs.github.com/spec/v1
2
+ oid sha256:f457b3167b6629a054cbfef59db094282c97136682537c95da3f49556674a711
3
+ size 152659316