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Cannot extract the features (columns) for the split 'train' of the config 'default' of the dataset.
Error code:   FeaturesError
Exception:    ArrowInvalid
Message:      JSON parse error: Column() changed from object to string in row 0
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 183, in _generate_tables
                  df = pandas_read_json(f)
                       ^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 38, in pandas_read_json
                  return pd.read_json(path_or_buf, **kwargs)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/pandas/io/json/_json.py", line 815, in read_json
                  return json_reader.read()
                         ^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/pandas/io/json/_json.py", line 1014, in read
                  obj = self._get_object_parser(self.data)
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/pandas/io/json/_json.py", line 1040, in _get_object_parser
                  obj = FrameParser(json, **kwargs).parse()
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/pandas/io/json/_json.py", line 1176, in parse
                  self._parse()
                File "/usr/local/lib/python3.12/site-packages/pandas/io/json/_json.py", line 1391, in _parse
                  self.obj = DataFrame(
                             ^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/pandas/core/frame.py", line 778, in __init__
                  mgr = dict_to_mgr(data, index, columns, dtype=dtype, copy=copy, typ=manager)
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/pandas/core/internals/construction.py", line 503, in dict_to_mgr
                  return arrays_to_mgr(arrays, columns, index, dtype=dtype, typ=typ, consolidate=copy)
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/pandas/core/internals/construction.py", line 114, in arrays_to_mgr
                  index = _extract_index(arrays)
                          ^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/pandas/core/internals/construction.py", line 677, in _extract_index
                  raise ValueError("All arrays must be of the same length")
              ValueError: All arrays must be of the same length
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/split/first_rows.py", line 243, in compute_first_rows_from_streaming_response
                  iterable_dataset = iterable_dataset._resolve_features()
                                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 3608, in _resolve_features
                  features = _infer_features_from_batch(self.with_format(None)._head())
                                                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2368, in _head
                  return next(iter(self.iter(batch_size=n)))
                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2573, in iter
                  for key, example in iterator:
                                      ^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2060, in __iter__
                  for key, pa_table in self._iter_arrow():
                                       ^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 2082, in _iter_arrow
                  yield from self.ex_iterable._iter_arrow()
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 544, in _iter_arrow
                  for key, pa_table in iterator:
                                       ^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/iterable_dataset.py", line 383, in _iter_arrow
                  for key, pa_table in self.generate_tables_fn(**gen_kwags):
                                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 186, in _generate_tables
                  raise e
                File "/usr/local/lib/python3.12/site-packages/datasets/packaged_modules/json/json.py", line 160, in _generate_tables
                  pa_table = paj.read_json(
                             ^^^^^^^^^^^^^^
                File "pyarrow/_json.pyx", line 342, in pyarrow._json.read_json
                File "pyarrow/error.pxi", line 155, in pyarrow.lib.pyarrow_internal_check_status
                File "pyarrow/error.pxi", line 92, in pyarrow.lib.check_status
              pyarrow.lib.ArrowInvalid: JSON parse error: Column() changed from object to string in row 0

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RxnPatent Dataset

The RxnPatent dataset is specifically constructed for the task of chemical reaction flow diagram parsing. It comprises data extracted from World Intellectual Property Organization (WO) and United States (US) patents in chemistry, pharmaceuticals, and related fields.

Key Features

  • Language Composition: The textual data primarily consists of Chinese and English, with a smaller number of samples in Japanese and Korean.
  • Data Format: Follows the annotation format consistent with the RxnScribe project. Please refer to its documentation for details.
  • Data Characteristics:
    • Includes both single-step and multi-step reaction flow diagram images.
    • The diagram_type of images is not annotated.
    • Contains negative samples (images with chemical structures that do not depict a reaction) to improve model discrimination.
  • Annotation Quality: All data annotations were performed manually by professionals holding a Master’s degree in Chemistry, ensuring high accuracy and reliability.

Statistics

Split Total Images Images with Reactions Total Annotated Reactions
Train 2,281 1,084 3,918
Test 162 84 272

File Structure

RxnPatent/

├── images/ # Directory containing all patent images

├── train.json # Annotation file for the training set

└── test.json # Annotation file for the test set

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