README.md

metadata

language:
  - es
tags:
  - biomedical
  - clinical
  - spanish
multilinguality:
  - monolingual
task_categories:
  - token-classification
task_ids:
  - named-entity-recognition
license:
  - cc-by-4.0
pretty_name: LivingNER
dataset_info:
  features:
    - name: text
      dtype: string
    - name: tokens
      sequence: string
    - name: ner_tags
      sequence:
        class_label:
          names:
            '0': B-HUMAN
            '1': I-HUMAN
            '2': O
            '3': B-SPECIES
            '4': I-SPECIES
  splits:
    - name: train
      num_bytes: 12731536
      num_examples: 850
    - name: validation
      num_bytes: 2045835
      num_examples: 150
    - name: test
      num_bytes: 6790917
      num_examples: 500
  download_size: 5617310
  dataset_size: 21568288
configs:
  - config_name: default
    data_files:
      - split: train
        path: data/train-*
      - split: validation
        path: data/validation-*
      - split: test
        path: data/test-*
train-eval-index:
  - task: token-classification
    task_id: token_classification
    splits:
      train_split: train
      eval_split: test
    metrics:
      - type: f1
        name: f1

LivingNER

This is a third party reupload of the LivingNER task 1 dataset.

It only contains the task 1 for the Spanish language. It does not include the multilingual data nor the background data.

This dataset is part of a benchmark in the paper A comparative analysis of Spanish Clinical encoder-based models on NER and classification tasks.

Citation Information

@article{10.1093/jamia/ocae054,
    author = {García Subies, Guillem and Barbero Jiménez, Álvaro and Martínez Fernández, Paloma},
    title = {A comparative analysis of Spanish Clinical encoder-based models on NER and classification tasks},
    journal = {Journal of the American Medical Informatics Association},
    volume = {31},
    number = {9},
    pages = {2137-2146},
    year = {2024},
    month = {03},
    issn = {1527-974X},
    doi = {10.1093/jamia/ocae054},
    url = {https://doi.org/10.1093/jamia/ocae054},
}

Citation Information of the original dataset

@article{amiranda2022nlp,
title={Mention detection, normalization \& classification of species, pathogens, humans and food in clinical documents: Overview of LivingNER shared task and resources},
author={Miranda-Escalada, Antonio and Farr{'e}-Maduell, Eul{`a}lia and Lima-L{'o}pez, Salvador and Estrada, Darryl and Gasc{'o}, Luis and Krallinger, Martin},
journal = {Procesamiento del Lenguaje Natural},
year={2022}
}