README.md

---
language:
- es
tags:
- biomedical
- clinical
- spanish
multilinguality:
- monolingual
task_categories:
- text-classification
task_ids:
- multi-label-classification
license:
- cc-by-4.0
pretty_name: LivingNER3
configs:
- config_name: default
  data_files:
  - split: train
    path: data/train-*
  - split: validation
    path: data/validation-*
  - split: test
    path: data/test-*
dataset_info:
  features:
  - name: text
    dtype: string
  - name: label
    list:
      class_label:
        names:
          '0': 'No'
          '1': 'Yes'
  splits:
  - name: train
    num_bytes: 1560010
    num_examples: 425
  - name: validation
    num_bytes: 320464
    num_examples: 75
  - name: test
    num_bytes: 897775
    num_examples: 250
  download_size: 1591274
  dataset_size: 2778249
train-eval-index:
- task: text-classification
  task_id: multi_label_classification
  splits:
    train_split: train
    eval_split: test
  metrics:
  - type: f1
    name: f1
---

# LivingNER

This is a third party reupload of the [LivingNER](https://temu.bsc.es/livingner/) task 3 dataset.

It only contains the task 3 for the Spanish language. It does not include the multilingual data nor the background data.

This dataset is part of a benchmark in the paper [A comparative analysis of Spanish Clinical encoder-based models on NER and classification tasks](https://doi.org/10.1093/jamia/ocae054).

### Citation Information
```bibtext
@article{10.1093/jamia/ocae054,
    author = {García Subies, Guillem and Barbero Jiménez, Álvaro and Martínez Fernández, Paloma},
    title = {A comparative analysis of Spanish Clinical encoder-based models on NER and classification tasks},
    journal = {Journal of the American Medical Informatics Association},
    volume = {31},
    number = {9},
    pages = {2137-2146},
    year = {2024},
    month = {03},
    issn = {1527-974X},
    doi = {10.1093/jamia/ocae054},
    url = {https://doi.org/10.1093/jamia/ocae054},
}
```

### Citation Information of the original dataset 
```bibtex
@article{amiranda2022nlp,
title={Mention detection, normalization \& classification of species, pathogens, humans and food in clinical documents: Overview of LivingNER shared task and resources},
author={Miranda-Escalada, Antonio and Farr{'e}-Maduell, Eul{`a}lia and Lima-L{'o}pez, Salvador and Estrada, Darryl and Gasc{'o}, Luis and Krallinger, Martin},
journal = {Procesamiento del Lenguaje Natural},
year={2022}
}
```